From 19a14095189c9c435b96f963eeddd257410b003b Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 2 Feb 2026 20:59:36 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit-autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.14.10 → v0.14.14](https://github.com/astral-sh/ruff-pre-commit/compare/v0.14.10...v0.14.14)
- [github.com/psf/black-pre-commit-mirror: 25.12.0 → 26.1.0](https://github.com/psf/black-pre-commit-mirror/compare/25.12.0...26.1.0)
- [github.com/kynan/nbstripout: 0.8.2 → 0.9.0](https://github.com/kynan/nbstripout/compare/0.8.2...0.9.0)
---
 .pre-commit-config.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index dc2f1ef..880f4e3 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -33,13 +33,13 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.14.10
+    rev: v0.14.14
     hooks:
       - id: ruff
         args: [ --fix, --exit-non-zero-on-fix ]
 
   - repo: https://github.com/psf/black-pre-commit-mirror
-    rev: 25.12.0
+    rev: 26.1.0
     hooks:
       - id: black
         types: [python]
@@ -48,7 +48,7 @@ repos:
       - id: black-jupyter
 
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.8.2
+    rev: 0.9.0
     hooks:
       - id: nbstripout
 

From 00b6d2d90c905c2e1f55195be41e16ecac46e717 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 2 Feb 2026 21:00:00 +0000
Subject: [PATCH 2/2] [pre-commit.ci] Fixing issues with pre-commit

---
 AFMReader/gwy.py | 6 ++----
 AFMReader/jpk.py | 4 ++--
 2 files changed, 4 insertions(+), 6 deletions(-)

diff --git a/AFMReader/gwy.py b/AFMReader/gwy.py
index 087af4b..834cd25 100644
--- a/AFMReader/gwy.py
+++ b/AFMReader/gwy.py
@@ -75,11 +75,9 @@ def load_gwy(file_path: Path | str, channel: str) -> tuple[np.ndarray[Any, np.fl
             image = image * 1e9
             px_to_nm = px_to_nm * 1e9
         else:
-            raise ValueError(
-                f"Units '{units}' have not been added for .gwy files. Please add \
+            raise ValueError(f"Units '{units}' have not been added for .gwy files. Please add \
                 an SI to nanometre conversion factor for these units in _gwy_read_component in \
-                io.py."
-            )
+                io.py.")
 
     except FileNotFoundError:
         logger.info(f"[{filename}] File not found : {file_path}")
diff --git a/AFMReader/jpk.py b/AFMReader/jpk.py
index 7da1605..4a13a61 100644
--- a/AFMReader/jpk.py
+++ b/AFMReader/jpk.py
@@ -269,7 +269,7 @@ def _load_jpk_tags(config_path: str | Path | None = None) -> dict[str, int]:
         Dictionary of JPK configuration options.
     """
     if config_path is None:
-        config_path = resources.files(__package__) / "default_config.yaml"  # type:ignore[assignment]
-    config = read_yaml(Path(config_path))  # type:ignore[arg-type]
+        config_path = resources.files(__package__) / "default_config.yaml"  # type: ignore[assignment]
+    config = read_yaml(Path(config_path))  # type: ignore[arg-type]
     logger.info(f"Configuration loaded from : {config_path}")
     return config["jpk"]