diff --git a/bed_file.py b/bed_file.py new file mode 100644 index 0000000..e6352ee --- /dev/null +++ b/bed_file.py @@ -0,0 +1,19 @@ +import sys + +def bed_parser(bfile): + output_data = [] + with open(bfile) as bed_data: + for line in bed_data.input(): + try: + line = bed_data.stdin.readline() + if not line: + break + return + for line in bed_data.input(): + if len(bed_data) < 3: + break + else: + continue + for element in range(len(bed_data)): + output_data.append(turple(element[0:5])) + return output_data