I can't get it to work after installing #112
Description
liujunhua 17:25:25 ~
$ conda activate gtotrees
(gtotrees) liujunhua 17:25:39 ~
$ gtt-test.sh
Downloading GToTree test data into the subdirectory GToTree-test-data/
Data being pulled from here:
https://figshare.com/articles/dataset/GToTree_test_data/19372334
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
tar: This does not look like a tar archive
gzip: stdin: unexpected end of file
tar: Child returned status 1
tar: Error is not recoverable: exiting now
$ gtt-get-accessions-from-GTDB -t Nitrososphaerales --get-taxon-counts
Downloading and parsing archaeal and bacterial metadata tables from
GTDB (only needs to be done once)...
Traceback (most recent call last):
File "/home/liujunhua/miniconda3/envs/gtotree/bin/gtt-get-accessions-from-GTDB", line 606, in
main()
File "/home/liujunhua/miniconda3/envs/gtotree/bin/gtt-get-accessions-from-GTDB", line 94, in main
gtdb_tab = get_gtdb_tab(args.do_not_check_GTDB_version, args.store_GTDB_metadata_in_current_working_dir)
File "/home/liujunhua/miniconda3/envs/gtotree/bin/gtt-get-accessions-from-GTDB", line 552, in get_gtdb_tab
gtdb_tab = gen_gtdb_tab(GTDB_dir)
File "/home/liujunhua/miniconda3/envs/gtotree/bin/gtt-get-accessions-from-GTDB", line 409, in gen_gtdb_tab
arc_tar_gz = urllib.request.urlopen("https://data.gtdb.ecogenomic.org/releases/latest/ar53_metadata.tar.gz")
File "/home/liujunhua/miniconda3/envs/gtotree/lib/python3.9/urllib/request.py", line 214, in urlopen
return opener.open(url, data, timeout)
File "/home/liujunhua/miniconda3/envs/gtotree/lib/python3.9/urllib/request.py", line 523, in open
response = meth(req, response)
File "/home/liujunhua/miniconda3/envs/gtotree/lib/python3.9/urllib/request.py", line 632, in http_response
response = self.parent.error(
File "/home/liujunhua/miniconda3/envs/gtotree/lib/python3.9/urllib/request.py", line 561, in error
return self._call_chain(*args)
File "/home/liujunhua/miniconda3/envs/gtotree/lib/python3.9/urllib/request.py", line 494, in _call_chain
result = func(*args)
File "/home/liujunhua/miniconda3/envs/gtotree/lib/python3.9/urllib/request.py", line 641, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
I followed the installation tutorial exactly, but these errors occurred and I couldn't resolve them.