From 21161eb0dc63cb0fe99fc0252e63178c1deb0baf Mon Sep 17 00:00:00 2001
From: anasrferreira <anaferreira@berkeley.edu>
Date: Tue, 3 Mar 2015 18:02:51 -0800
Subject: [PATCH] newparse strips the path from inputfilename if
 outputdirectory is given

---
 src/main/C/newparse/newparse.cpp | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/src/main/C/newparse/newparse.cpp b/src/main/C/newparse/newparse.cpp
index b0a0c3da..7898f53f 100755
--- a/src/main/C/newparse/newparse.cpp
+++ b/src/main/C/newparse/newparse.cpp
@@ -94,7 +94,9 @@ int main(int argc, char ** argv) {
     string rname = here;
     if (strstr(here, ".gz") - here == strlen(here) - 3) {
       rname = rname.substr(0, strlen(here) - 3);
-    } 
+    }
+    // if outputdir given, this strips path from inputfile
+    if (odname.size() != 0) rname = rname.substr(rname.find_last_of("\\/")+1);
     writeIntVec(tokens, odname+rname+".imat"+suffix, membuf);
     tokens.clear();
     numlines = 0;