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WIP decouple data containers from input management #2

@jbeisman

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@jbeisman

The basic structs used to organize raw views should be decoupled from other functionality as much as possible.

Needs work: aerosol_data, atm_data, phenology_data, pft_data, snicar_data
soil_data, model and timestep initialization functions

subgoal of #1

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