From 85a523154108b812d40d85073088eaee0b29c110 Mon Sep 17 00:00:00 2001
From: martindemko <325073@mail.muni.cz>
Date: Thu, 9 Oct 2025 22:35:40 +0200
Subject: [PATCH] Changes /storage to /auto

---
 group_vars/pulsarservers.yml | 4 ++--
 pulsar.yml                   | 6 +++---
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/group_vars/pulsarservers.yml b/group_vars/pulsarservers.yml
index 7c0f928..5220589 100644
--- a/group_vars/pulsarservers.yml
+++ b/group_vars/pulsarservers.yml
@@ -7,7 +7,7 @@ rabbitmq_port: 5671 # DEMON: must be port where to contact RabbitMQ server
 
 pulsar_root: /opt/pulsar
 pulsar_package_version: "0.15.6"
-pulsar_data_dir: "/storage/{{ galaxy_user.nfs_home }}/home/{{ galaxy_user.name }}/{{ pulsar_prefix }}"
+pulsar_data_dir: "/auto/{{ galaxy_user.nfs_home }}/home/{{ galaxy_user.name }}/{{ pulsar_prefix }}"
 pulsar_staging_dir: "{{ pulsar_data_dir }}/files/staging"
 pulsar_persistence_dir: "{{ pulsar_root }}/files/persistent"
 pulsar_dependencies_dir: "{{ pulsar_data_dir }}/deps"
@@ -69,7 +69,6 @@ pulsar_yaml_config:
   tool_dependency_dir: "{{ pulsar_dependencies_dir }}"
   # The following are the settings for the pulsar server to contact the message queue with related timeouts etc.
   message_queue_url: "pyamqp://{{ rabbitmq_user }}:{{ rabbitmq_password }}@{{ rabbitmq_hostname }}:{{ rabbitmq_port }}/{{ rabbitmq_vhost }}?ssl=1"
-  min_polling_interval: 60.0
   amqp_publish_retry: True
   amqp_publish_retry_max_retries: 5
   amqp_publish_retry_interval_start: 10
@@ -97,6 +96,7 @@ pulsar_yaml_config:
       postprocess_action_interval_start: 2
       postprocess_action_interval_step: 2
       postprocess_action_interval_max: 30
+      min_polling_interval: 60.0
 
 # Pulsar should use the same job metrics plugins as Galaxy. This will automatically set `job_metrics_config_file` in
 # `pulsar_yaml_config` and create `{{ pulsar_config_dir }}/job_metrics_conf.yml`.
diff --git a/pulsar.yml b/pulsar.yml
index 80f98fc..7413efe 100644
--- a/pulsar.yml
+++ b/pulsar.yml
@@ -20,7 +20,7 @@
     pulsar_prefix: pulsar-re
 
     # Miniconda settings
-    miniconda_prefix: "/storage/{{ galaxy_user.nfs_home }}/home/{{ galaxy_user.name }}/anaconda3"
+    miniconda_prefix: "/auto/{{ galaxy_user.nfs_home }}/home/{{ galaxy_user.name }}/anaconda3"
     miniconda_version: 23.1.0
     miniconda_base_env_packages: ['mamba']
     miniconda_channels:
@@ -61,7 +61,7 @@
     - name: Mount NFS volume to share job data with worker nodes
       ansible.posix.mount:
         src: "storage-{{ galaxy_user.nfs_home }}.metacentrum.cz:/"
-        path: "/storage/{{ galaxy_user.nfs_home }}"
+        path: "/auto/{{ galaxy_user.nfs_home }}"
         opts: "sec=krb5i,proto=tcp,port=2049,intr"
         state: mounted
         fstype: nfs4
@@ -140,7 +140,7 @@
       become_user: "{{ galaxy_user.name }}"
     - name: Create .drmaa folder in NFS home
       ansible.builtin.file:
-        path: "/storage/{{ galaxy_user.nfs_home }}/home/{{ galaxy_user.name }}/.drmaa"
+        path: "/auto/{{ galaxy_user.nfs_home }}/home/{{ galaxy_user.name }}/.drmaa"
         state: directory
       become: yes
       become_user: "{{ galaxy_user.name }}"