Test and Coverage

Remove deprecated features from CLI #506

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Run time

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Job	Run time
test (3.11, ubuntu-latest)	4m 11s
test (3.11, macos-latest)	2m 7s
test (3.11, macos-14)	2m 33s
test (3.12, ubuntu-latest)	4m 34s
test (3.12, macos-latest)	2m 33s
test (3.12, macos-14)	2m 40s
test (3.13, ubuntu-latest)	4m 9s
test (3.13, macos-latest)	2m 10s
	24m 57s