From 2f64d112d01eafe460c78453074d06467313ed22 Mon Sep 17 00:00:00 2001 From: Timothee Cezard Date: Thu, 23 Jan 2025 10:28:11 +0000 Subject: [PATCH 1/2] increase time allocated to split_fasta --- variant_to_realignment.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/variant_to_realignment.nf b/variant_to_realignment.nf index 4d45acb..cafb9db 100755 --- a/variant_to_realignment.nf +++ b/variant_to_realignment.nf @@ -126,7 +126,7 @@ process extractVariantInfoToFastaHeader { * Split fasta entries into multiple chunks */ process split_fasta { - label 'short_time', 'small_mem' + label 'default_time', 'small_mem' input: path interleaved_fasta From ac09f88dfbbfe780d77e8c1681e2b9bc3cd83143 Mon Sep 17 00:00:00 2001 From: Timothee Cezard Date: Mon, 27 Jan 2025 09:18:40 +0000 Subject: [PATCH 2/2] Change the python version tested to 3.9 --- .github/workflows/variant_remapping.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/variant_remapping.yml b/.github/workflows/variant_remapping.yml index 59af196..f165308 100644 --- a/.github/workflows/variant_remapping.yml +++ b/.github/workflows/variant_remapping.yml @@ -11,7 +11,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: [3.8] + python-version: [3.9] steps: - uses: actions/checkout@v2