Add bulkR package draft

Author: Vito Zanotelli

R/bulkR/.Rbuildignore

@@ -0,0 +1 @@
+^LICENSE\.md$

R/bulkR/.gitignore

@@ -0,0 +1,6 @@
+.Rproj.user
+.Rhistory
+.Rdata
+.httr-oauth
+.DS_Store
+.quarto

R/bulkR/DESCRIPTION

@@ -0,0 +1,14 @@
+Package: bulkR
+Title: What the Package Does (One Line, Title Case)
+Version: 0.0.0.9000
+Authors@R: 
+    person("First", "Last", , "first.last@example.com", role = c("aut", "cre"),
+           comment = c(ORCID = "YOUR-ORCID-ID"))
+Description: What the package does (one paragraph).
+License: MIT + file LICENSE
+Encoding: UTF-8
+Roxygen: list(markdown = TRUE)
+RoxygenNote: 7.3.1
+Suggests: 
+    testthat (>= 3.0.0)
+Config/testthat/edition: 3

R/bulkR/LICENSE

@@ -0,0 +1,2 @@
+YEAR: 2024
+COPYRIGHT HOLDER: Vito Zanotelli, University Children's Hospital Zurich

R/bulkR/LICENSE.md

@@ -0,0 +1,21 @@
+# MIT License
+
+Copyright (c) 2024 Vito Zanotelli, University Children's Hospital Zurich
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

R/bulkR/NAMESPACE

@@ -0,0 +1,2 @@
+# Generated by roxygen2: do not edit by hand
+

R/bulkR/NEWS.md

@@ -0,0 +1,3 @@
+# bulkR (development version)
+
+* Initial CRAN submission to be done

R/bulkR/R/utils.R

@@ -0,0 +1,28 @@
+
+# bulkR
+
+<!-- badges: start -->
+<!-- badges: end -->
+
+The goal of bulkR is to provide helper functions for bulk
+omics analyses
+
+## Installation
+
+You can install the development version of bulkR like so:
+
+``` ri
+library(devtools)
+install_github("FroeseLab/bulkR")
+
+```
+
+## Example
+
+This is a basic example which shows you how to solve a common problem:
+
+``` r
+library(bulkR)
+## basic example code
+```
+

R/bulkR/README.md

@@ -0,0 +1,12 @@
+# This file is part of the standard setup for testthat.
+# It is recommended that you do not modify it.
+#
+# Where should you do additional test configuration?
+# Learn more about the roles of various files in:
+# * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
+# * https://testthat.r-lib.org/articles/special-files.html
+
+library(testthat)
+library(bulkR)
+
+test_check("bulkR")