When Tleap or Amber fails for a structure, we still serve the result to the user.

[gitoliver]

Build:
DGalpNAca1-2DNeup5Aca

You get a 3D structure, but if you download the folder you see that tleap failed:
tail unminimized-gas.leaplog
Exiting LEaP: Errors = 6;

Somewhere we need a check for this, and I don't think this is a gmml issue. We need to decide how we will handle checking for this and telling the website something is up.

[gitoliver]

Dan here is a sequence you can use that on test will fail at the AMBER minimization step. The page keeps reporting minimizing for ever:

There is an error that gems could look for.