When using add TADCoverage test.bed for the first time in the CLI, coolbox works fine and it creates a compressed bed file test.bed.bgz and its index test.bed.bgz.tbi. However, if I want to run coolbox again, it throws the error below:
[W::hts_idx_load3] The index file is older than the data file: test.bed.bgz.tbi
The only way to replot is by deleting all the bed file (the orginal, the compressed, and the indexed file) and start over by recreating the bed file. Is there a way to perhaps avoid this?