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Use SnpEff for annotations #36

@jsture

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@jsture

We should switch to using the SnpEff applet in the UKB for annotating SNPs now that VEP is gone from the pipeline.

  • Use export_vcf on the final mt after dropping all sample info.
  • Write a script to run launch and run SnpEff on this VCF
  • Post-process the output VCF to create .annotations file and .setlist

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