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enhancementNew feature or requestNew feature or requestgood first issueGood for newcomersGood for newcomers
Description
We should switch to using the SnpEff applet in the UKB for annotating SNPs now that VEP is gone from the pipeline.
- Use
export_vcfon the finalmtafter dropping all sample info. - Write a script to run launch and run SnpEff on this VCF
- Post-process the output VCF to create
.annotationsfile and.setlist
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enhancementNew feature or requestNew feature or requestgood first issueGood for newcomersGood for newcomers