Create an API endpoint to download data from NCBI - through Download tool of Candis. #53
Description
This will be used to download data from NCBI into Candis.
Checklist: to implement
- Add API endpoint to call Entrez module.
- Add GEO module
- Implement Esearch
- Implement Esummary
- Implement the logic as described in https://www.ncbi.nlm.nih.gov/geo/info/geo_paccess.html#ExampleIII
- Use socket.io for download progress.
- Add test cases
- Remove time.sleep()
- Setup logging instead of print statements. - refer Add a common logger module for logging in different modules. #137
- Start redis server from
Procfile(now using honho Manager class) - use different port if initialized. - refer Start Redis Server using honcho Manager class. #99 - ftplib is used for downloading- show progress bar (It shows up with 'wget')
- Integrate with front-end. - refer issue Integrate frontend entrez form with backend #110 TODO: Improvements needed as mentioned in the related PRs to Integrate frontend entrez form with backend #110
- Add JS test cases for the same.
- Instead of using requests.Timeout error, use custom error class.