Call for the TRUTH_VCF file

[thangnx1012]

I am grateful for the tool.
I run the ONT data with Tumor only with pepper-DeepVariant, so I don't have the Normal-matched tumor to call the truth-vcf file. Can I download truth_VCF sources (the source has not been found yet) to run the hap.py or skip that?

[neerajdangii]

https://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/release/NA12878_HG001/latest/GRCh38/ you can access truth file from these URL

[thangnx1012]

Thanks for the reply. Do you also have the truth_VCF file for the CHM13v2 reference?

[neerajdangii]

https://github.com/marbl/CHM13#chm13-genome-resources
https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_009914755.1/

here you can find Truth vcf file