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Expand Up @@ -136,7 +136,7 @@ You may find some errors and warnings. Check these out in some kind of genome
browser and remove those that are real errors. Next, break up the sequences into
fragments with one gene per sequence with the following command:

fathom -genome.ann genome.dna -categorize 1000
fathom genome.ann genome.dna -categorize 1000

There will be up to 1000 bp on either side of the genes. You will find
several new files.
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