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Description
Users may prefer to use Alevin as the quantification backend as it offers an alternative deduplication model. Multiple tasks are necessary to establish this:
- add a new configuration key, e.g.,
backendthat accepts either: "kallisto-bustools" or "alevin" - create UTRome indices (mouse, human) for alevin, possibly with genomic decoy
- implement downloading rules (probably should do this as part of snakemake all the things #51)
- implement quantification rules
- implement output rules
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enhancementNew feature or requestNew feature or request