Bioconda install #58
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| name: Bioconda install | |
| on: | |
| schedule: | |
| - cron: '0 3 * * 1' | |
| jobs: | |
| install-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Install dependencies | |
| run: | | |
| conda install -c conda-forge -c bioconda biophi | |
| - name: Run tests | |
| run: | | |
| biophi sapiens -h | |
| biophi oasis -h | |
| pip install pytest | |
| make pytest |