From 70be41fb688349e35497cc4b7980895dba50c098 Mon Sep 17 00:00:00 2001 From: EnfxcFCb6 Date: Mon, 2 Jun 2025 13:54:22 -0400 Subject: [PATCH] Standardized README to Markdown format --- README.md | 60 ++++++++++++++++++ index.html | 182 ----------------------------------------------------- 2 files changed, 60 insertions(+), 182 deletions(-) create mode 100644 README.md delete mode 100644 index.html diff --git a/README.md b/README.md new file mode 100644 index 0000000..2532d40 --- /dev/null +++ b/README.md @@ -0,0 +1,60 @@ +#### Note from the ModelDB Administrator: + +the below is a copy of the web page [http://timecourse.nm.ru](http://timecourse.nm.ru) on February 12th, 2009. The paper also mentions that the +"Simulations were performed with custom-written codes +using Free Pascal Compiler ([www.freepascal.org](http://www.freepascal.org))." + +--- + +## Some supplementary data for paper + +### MODELING OF QUANTAL NEUROTRANSMITTER RELEASE KINETICS IN THE PRESENCE OF FIXED AND MOBILE CALCIUM BUFFERS +Iskander R. Gilmanov1, Dmitry V. Samigullin1, Frantisek Vyskocil2, Eugeny E. Nikolsky1,3 Ellya A. Bukharaeva1,3 + +Source: [tcr10.pas](http://timecourse.nm.ru/tcr10.pas) +Compiled executable: [tcr10.exe](http://cellcycle.front.ru/tcr10.exe) +Example of file with settnigs: [tcr10.ini](http://timecourse.nm.ru/tcr10.ini) + +#### Settings for figure 3: + +[tcr10.ini](http://timecourse.nm.ru/Ca03%20without%20buffers/tcr10.ini) for case with Ca flux 0.3 pA without buffers +resulting [tcr10.tcr](http://timecourse.nm.ru/Ca03%20without%20buffers/tcr10.tcr) of case with Ca flux 0.9 pA without buffers + +[tcr10.ini](http://timecourse.nm.ru/Ca09%20without%20buffers/tcr10.ini) for case with Ca flux 0.9 pA without buffers +resulting [tcr10.tcr](http://timecourse.nm.ru/Ca09%20without%20buffers/tcr10.tcr) of case with Ca flux 0.9 pA without buffers + +#### Settings for figure 4: + +[tcr10.ini](http://timecourse.nm.ru/Ca03%20without%20buffers/tcr10.ini) for case with Ca flux 0.3 pA without buffers +resulting [tcr10.tcr](http://timecourse.nm.ru/Ca03%20without%20buffers/tcr10.tcr) of case with Ca flux 0.9 pA without buffers + +[tcr10.ini](http://timecourse.nm.ru/Ca03%20only%20mobile%20buffer/tcr10.ini) for case with Ca flux 0.3 pA with mobile buffer only +resulting [tcr10.tcr](http://timecourse.nm.ru/Ca03%20only%20mobile%20buffer/tcr10.tcr) of case with Ca flux 0.3 pA with mobile buffer only + +#### Settings for figure 5: + +[tcr10.ini](http://timecourse.nm.ru/Ca03%20only%20mobile%20buffer/tcr10.ini) for case with Ca flux 0.3 pA with mobile buffer only +resulting [tcr10.tcr](http://timecourse.nm.ru/Ca03%20only%20mobile%20buffer/tcr10.tcr) of case with Ca flux 0.3 pA with mobile buffer only + +[tcr10.ini](http://timecourse.nm.ru/Ca09%20only%20mobile%20buffer/tcr10.ini) for case with Ca flux 0.9 pA with mobile buffer only +resulting [tcr10.tcr](http://timecourse.nm.ru/Ca09%20only%20mobile%20buffer/tcr10.tcr) of case with Ca flux 0.9 pA with mobile buffer only + +#### Settings for figure 6: + +[tcr10.ini](http://timecourse.nm.ru/Ca03%20only%20fixed%20buffer/tcr10.ini) for case with Ca flux 0.3 pA with fixed buffer only +resulting [tcr10.tcr](http://timecourse.nm.ru/Ca03%20only%20fixed%20buffer/tcr10.tcr) of case with Ca flux 0.3 pA with fixed buffer only + +[tcr10.ini](http://timecourse.nm.ru/Ca09%20only%20fixed%20buffer/tcr10.ini) for case with Ca flux 0.9 pA with fixed buffer only +resulting [tcr10.tcr](http://timecourse.nm.ru/Ca09%20only%20fixed%20buffer/tcr10.tcr) of case with Ca flux 0.9 pA with fixed buffer only + +#### Settings for figure 7: + +[tcr10.ini](http://timecourse.nm.ru/Ca03%20only%20fixed%20buffer/tcr10.ini) for case with Ca flux 0.3 pA with fixed buffer only +resulting [tcr10.tcr](http://timecourse.nm.ru/Ca03%20only%20fixed%20buffer/tcr10.tcr) of case with Ca flux 0.3 pA with fixed buffer only + +[tcr10.ini](http://timecourse.nm.ru/Ca03%20fixed%20and%20mobile%20buffers/tcr10.ini) for case with Ca flux 0.3 pA with fixed and mobile buffers +resulting [tcr10.tcr](http://timecourse.nm.ru/Ca03%20fixed%20and%20mobile%20buffers/tcr10.tcr) of case with Ca flux 0.3 pA with fixed and mobile buffers + +--- + +2025-06-02: Converted README to Markdown. \ No newline at end of file diff --git a/index.html b/index.html deleted file mode 100644 index 4b1c73b..0000000 --- a/index.html +++ /dev/null @@ -1,182 +0,0 @@ - - -

Note from the ModelDB Administrator:

the below is a copy of the web page -http://timecourse.nm.ru on February 12th, 2009. The paper also mentions that the -"Simulations were performed with custom-written codes -using Free Pascal Compiler (www.freepascal.org)." -
-

Some supplementary data for paper

-

MODELING OF QUANTAL NEUROTRANSMITTER RELEASE KINETICS IN THE PRESENCE OF FIXED AND MOBILE CALCIUM BUFFERS
-Iskander R. Gilmanov1, Dmitry V. Samigullin1, Frantisek Vyskocil2, Eugeny E. Nikolsky1,3 Ellya A. Bukharaeva1,3

-

- -Source: tcr10.pas
-Compiled executable: tcr10.exe
-Example of file with settnigs: tcr10.ini
-

-

Settings for figure 3:

-tcr10.ini for case with Ca flux 0.3 pA without buffers
-resulting tcr10.tcr of case with Ca flux 0.9 pA without buffers
-

-tcr10.ini for case with Ca flux 0.9 pA without buffers
-resulting tcr10.tcr of case with Ca flux 0.9 pA without buffers
-

-

Settings for figure 4:

-tcr10.ini for case with Ca flux 0.3 pA without buffers
-resulting tcr10.tcr of case with Ca flux 0.9 pA without buffers
-

-tcr10.ini for case with Ca flux 0.3 pA with mobile buffer only
-resulting tcr10.tcr of case with Ca flux 0.3 pA with mobile buffer only
-

-

Settings for figure 5:

-tcr10.ini for case with Ca flux 0.3 pA with mobile buffer only
-resulting tcr10.tcr of case with Ca flux 0.3 pA with mobile buffer only
-

-tcr10.ini for case with Ca flux 0.9 pA with mobile buffer only
-resulting tcr10.tcr of case with Ca flux 0.9 pA with mobile buffer only
-

-

Settings for figure 6:

-tcr10.ini for case with Ca flux 0.3 pA with fixed buffer only
-resulting tcr10.tcr of case with Ca flux 0.3 pA with fixed buffer only
-

-tcr10.ini for case with Ca flux 0.9 pA with fixed buffer only
-resulting tcr10.tcr of case with Ca flux 0.9 pA with fixed buffer only
-

-

Settings for figure 7:

-tcr10.ini for case with Ca flux 0.3 pA with fixed buffer only
-resulting tcr10.tcr of case with Ca flux 0.3 pA with fixed buffer only
-

-tcr10.ini for case with Ca flux 0.3 pA with fixed and mobile buffers
-resulting tcr10.tcr of case with Ca flux 0.3 pA with fixed and mobile buffers
-

- - - - - - -   - - - - - - - - - - - - - - - - - - - - -

- - - - - - - -

- -