drugbank_xml_to_sql.py 'NoneType' has no attribute 'rstrip'

[svanschalkwyk]

$ python drugbank_xml_to_sql.py

Traceback (most recent call last):
File "drugbank_xml_to_sql.py", line 263, in
temp_mesh_ids = m.text.rstrip().split(", ")
AttributeError: 'NoneType' object has no attribute 'rstrip'

[svanschalkwyk]

Fixing it: {http://www.drugbank.ca}category == Blood and Blood Forming Organs

[svanschalkwyk]

Fix: starting @ line 260
if(m.tag == '{http://www.drugbank.ca}category'):
CATEGORY_NAME = m.text.rstrip().replace('\n', '\n').replace('\r', '\r').replace('|', '|')
if(m.tag == '{http://www.drugbank.ca}mesh-id'):
if(m.text != None):
temp_mesh_ids = m.text.rstrip().split(", ")
for index in range(len(temp_mesh_ids)):
mesh_ids.append((temp_mesh_ids[index]).replace('[', '').replace(']', ''))