diff --git a/README.md b/README.md index 24a60ae..7e4bd8c 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,7 @@ # scLVM +## This is a version of scLVM with fixed imports for python 3.10, however it still needs some attention and love. +You need a conda environment with python 3.10, pip, numpy and limix-legacy. Install scLVM from github by first forking, and then running "pip install ." inside the repo. However, some parameter changes are not fixed yet. Do not install scLVM via pip, that version is not working. ## What is scLVM? diff --git a/scLVM/core.py b/scLVM/core.py index 107e91c..6b4be42 100644 --- a/scLVM/core.py +++ b/scLVM/core.py @@ -17,9 +17,9 @@ import sys #import limix #make sure we use the right limix version -from utils.misc import dumpDictHdf5 -from utils.misc import PCA -from utils.misc import warning_on_one_line +from .utils.misc import dumpDictHdf5 +from .utils.misc import PCA +from .utils.misc import warning_on_one_line import limix_legacy import limix_legacy.deprecated.modules.panama as PANAMA