Broken links detected - 12/05/2025

[github-actions]

The broken links check has detected potential broken links in metadata.json.

Please review the following report and fix the links as soon as possible:

Image	URL Type	Broken URL	HTTP response status code
fasttree	test_data_url	http://evolution6.i3s.up.pt/static/pegi3s/dockerfiles/input_test_data/small_aligned.fasta	404
haddock-tools	manual_url	https://github.com/haddocking/haddock-tools/blob/master/README.md	429
fasttree	manual_url	http://www.microbesonline.org/fasttree/#How	403
getpdb	test_results_url	http://evolution6.i3s.up.pt/static/pegi3s/dockerfiles/output_test_data/getpdb_ouput.zip	404
kakscalculator	manual_url	https://github.com/pegi3s/dockerfiles/blob/master/kakscalculator/2.0/doc/KaKs_Calculator2.0_Manual.pdf	429
metaeuk	manual_url	https://github.com/soedinglab/metaeuk/blob/master/README.md	429
mrbayes	manual_url	https://github.com/NBISweden/MrBayes/blob/develop/doc/manual/Manual_MrBayes_v3.2.pdf	429
metaeuk	test_results_url	http://evolution6.i3s.up.pt/static/pegi3s/dockerfiles/output_test_data/metaeuk_output.zip	404
omegamap	manual_url	https://github.com/danny-wilson/omegaMap/blob/master/Documentation/documentation.pdf	429
ncbi-datasets	test_results_url	http://evolution6.i3s.up.pt/static/pegi3s/dockerfiles/output_test_data/ncbi-datasets.zip	404
pdb-tools	manual_url	https://github.com/haddocking/pdb-tools/blob/master/README.md	429
plasflow	manual_url	https://github.com/smaegol/PlasFlow/blob/master/README.md	429
pycision	manual_url	https://github.com/Ahhgust/Pycision/blob/master/README.md	429
r_data-analysis	manual_url	https://github.com/pegi3s/dockerfiles/blob/master/r_data-analysis	429
r_network	manual_url	https://github.com/pegi3s/dockerfiles/blob/master/r_network/README.md	429
r_venn-diagram	test_results_url	http://evolution6.i3s.up.pt/static/pegi3s/dockerfiles/output_test_data/r_venn-diagram_output.zip	404
soapdenovo2	manual_url	https://github.com/aquaskyline/SOAPdenovo2/blob/master/README.md	429
takeabreak	manual_url	https://github.com/GATB/TakeABreak/blob/master/README.md	429
velvet	manual_url	https://github.com/dzerbino/velvet/blob/master/Manual.pdf	429
wgsim	manual_url	https://github.com/lh3/wgsim/blob/master/README	429
i-tasser_server	manual_url	https://seq2fun.dcmb.med.umich.edu//I-TASSER/about.html	404
dib	manual_url	https://github.com/pegi3s/drosophila-inversion-breakpoints/blob/master/DIB_manual.pdf	429
tm-align_server	manual_url	https://seq2fun.dcmb.med.umich.edu//TM-align/	404
ngs_pipeliner	manual_url	https://github.com/pegi3s/dockerfiles/blob/master/ngs_pipeliner/manual.md	429
biopython_utilities	manual_url	https://github.com/pegi3s/dockerfiles/blob/master/biopython_utilities/README.md	429
blast_utilities	manual_url	https://github.com/pegi3s/dockerfiles/blob/master/blast_utilities/README.md	429
docker	manual_url	https://github.com/pegi3s/dockerfiles/blob/master/tutorials/docker-in-docker.md	429
cds2gff3-maker	manual_url	https://github.com/pegi3s/dockerfiles/blob/master/cds2gff3-maker/README.md	429
utilities	manual_url	https://github.com/pegi3s/dockerfiles/blob/master/utilities/MANUAL.md	429
values2tree	manual_url	https://github.com/pegi3s/dockerfiles/blob/master/values2tree/README.md	429