diff --git a/pyproject.toml b/pyproject.toml index 39255a3..7b69390 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -33,7 +33,7 @@ dependencies = [ [project.optional-dependencies] # Optional dev = [ - "black~=25.1", + "black~=26.1", "pytest~=9.0", "pytest-cov~=7.0", ] diff --git a/sample_registry/db.py b/sample_registry/db.py index 9b9a911..6322348 100644 --- a/sample_registry/db.py +++ b/sample_registry/db.py @@ -13,7 +13,6 @@ StandardHostSpecies, ) - STANDARD_TAGS = { "SampleType": "sample_type", "SubjectID": "subject_id", diff --git a/sample_registry/register.py b/sample_registry/register.py index 7f0d8a1..1530470 100644 --- a/sample_registry/register.py +++ b/sample_registry/register.py @@ -9,7 +9,6 @@ from sample_registry.registrar import SampleRegistry from seqBackupLib.illumina import IlluminaFastq - SAMPLES_DESC = """\ Add new samples to the registry, with annotations. """ diff --git a/tests/test_mapping.py b/tests/test_mapping.py index c5fc035..33c3c8f 100644 --- a/tests/test_mapping.py +++ b/tests/test_mapping.py @@ -1,7 +1,6 @@ import io from sample_registry.mapping import SampleTable - NORMAL_TSV = """\ SampleID BarcodeSequence HostSpecies SubjectID S1 GCCT Human Hu23 diff --git a/tests/test_register.py b/tests/test_register.py index 7d4d574..12ccfbf 100644 --- a/tests/test_register.py +++ b/tests/test_register.py @@ -25,7 +25,6 @@ register_host_species, ) - samples = [ { "SampleID": "abc123",