From e91dcfd7f01db0dbb746f9795ba95275daa8b8dd Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 19 Jan 2026 20:38:08 +0000 Subject: [PATCH 1/2] Update black requirement from ~=25.1 to ~=26.1 Updates the requirements on [black](https://github.com/psf/black) to permit the latest version. - [Release notes](https://github.com/psf/black/releases) - [Changelog](https://github.com/psf/black/blob/main/CHANGES.md) - [Commits](https://github.com/psf/black/compare/25.1.0...26.1.0) --- updated-dependencies: - dependency-name: black dependency-version: 26.1.0 dependency-type: direct:development ... Signed-off-by: dependabot[bot] --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 39255a3..7b69390 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -33,7 +33,7 @@ dependencies = [ [project.optional-dependencies] # Optional dev = [ - "black~=25.1", + "black~=26.1", "pytest~=9.0", "pytest-cov~=7.0", ] From 63e3dc5353478e7b83259a8ff4c6c337d94ddda2 Mon Sep 17 00:00:00 2001 From: Ulthran Date: Mon, 26 Jan 2026 11:38:42 -0500 Subject: [PATCH 2/2] Reformat (black==26.1) --- sample_registry/db.py | 1 - sample_registry/register.py | 1 - tests/test_mapping.py | 1 - tests/test_register.py | 1 - 4 files changed, 4 deletions(-) diff --git a/sample_registry/db.py b/sample_registry/db.py index 9b9a911..6322348 100644 --- a/sample_registry/db.py +++ b/sample_registry/db.py @@ -13,7 +13,6 @@ StandardHostSpecies, ) - STANDARD_TAGS = { "SampleType": "sample_type", "SubjectID": "subject_id", diff --git a/sample_registry/register.py b/sample_registry/register.py index 7f0d8a1..1530470 100644 --- a/sample_registry/register.py +++ b/sample_registry/register.py @@ -9,7 +9,6 @@ from sample_registry.registrar import SampleRegistry from seqBackupLib.illumina import IlluminaFastq - SAMPLES_DESC = """\ Add new samples to the registry, with annotations. """ diff --git a/tests/test_mapping.py b/tests/test_mapping.py index c5fc035..33c3c8f 100644 --- a/tests/test_mapping.py +++ b/tests/test_mapping.py @@ -1,7 +1,6 @@ import io from sample_registry.mapping import SampleTable - NORMAL_TSV = """\ SampleID BarcodeSequence HostSpecies SubjectID S1 GCCT Human Hu23 diff --git a/tests/test_register.py b/tests/test_register.py index 7d4d574..12ccfbf 100644 --- a/tests/test_register.py +++ b/tests/test_register.py @@ -25,7 +25,6 @@ register_host_species, ) - samples = [ { "SampleID": "abc123",