Better Taxonomy Lookup #7
Description
ete has NCBITaxa which uses an sqlite database that gives occasional concurrent access errors.
Supposedly it's possible to fetch the taxonomy using blastn on its own if you run it in the correct directory or something.@mousepixels
See:
https://github.com/lskatz/taxdb
https://github.com/jrjhealey/PYlogeny
https://github.com/onecodex/taxonomy
https://github.com/pvanheus/ncbitaxonomy
https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/taxonomy-guide/
https://bioinf.shenwei.me/taxonkit/