diff --git a/Formula/adapterremoval.rb b/Formula/adapterremoval.rb deleted file mode 100644 index 233b150b..00000000 --- a/Formula/adapterremoval.rb +++ /dev/null @@ -1,30 +0,0 @@ -class Adapterremoval < Formula - desc "Adapter trimming, consensus, and read merging" - homepage "https://github.com/MikkelSchubert/adapterremoval" - url "https://github.com/MikkelSchubert/adapterremoval/archive/v2.2.2.tar.gz" - sha256 "99832546428a1e9463a565fa726844a0559828bda9428b2b51ef6b3558079b67" - # doi "10.1186/s13104-016-1900-2" - # tag "bioinformatics" - - bottle do - root_url "https://archive.org/download/brewsci/bottles-science" - sha256 cellar: :any, sierra: "b1aae1b89e128b507e119d4ab94844a64e2e817c9b8dc62a50a6b89466d9fd33" - sha256 cellar: :any, el_capitan: "8f26751f1ac7176b73270270bfcf6ca917591c64e6bfd722017ed89664165b08" - sha256 cellar: :any, yosemite: "939e933e8d3cfd8b733eef9b0baf515813c6065d7b994613270895503a66a385" - sha256 cellar: :any, x86_64_linux: "098194dfec4b0dd2436186b2405e08d43c55c8ca56bdee22a53341e359eb9fa7" - end - - depends_on "bzip2" => :recommended - depends_on "zlib" => :recommended - - def install - system "make", "install", "PREFIX=#{prefix}" - end - - test do - system "#{bin}/AdapterRemoval", "--bzip2", \ - "--file1", "#{pkgshare}/examples/reads_1.fq", \ - "--file2", "#{pkgshare}/examples/reads_2.fq", \ - "--basename", "#{testpath}/output" - end -end diff --git a/tap_migrations.json b/tap_migrations.json index 1c2b8938..f4c267bb 100644 --- a/tap_migrations.json +++ b/tap_migrations.json @@ -3,6 +3,7 @@ "abyss": "homebrew/core", "abyss-explorer": "brewsci/bio", "adam": "brewsci/bio", + "adapterremoval": "homebrew/core", "alembic": "homebrew/core", "alpscore": "homebrew/core", "ampl-mp": "homebrew/core",