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birmbirm
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Add Ferret for a Open source (non-mongo) deployment option (#229)
* docker-compose to docker compose * initial partially-working ferret version * whatever I had on this branch * working barebones ferret camicroscope * revert special dev tag * key: add keycloak second
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‎.github/workflows/main.yml‎

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steps:
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- uses: actions/checkout@v2
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- name: Build the develop stack
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run: docker-compose -f develop.yml build
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run: docker compose -f develop.yml build

‎config/keycloak_login.html‎

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<html>
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<title>caMicroscope Keycloak Login</title>
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<head>
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<meta name="client_secret" content="MS3NXMPABktO2Dom7qoT0BStlYk1Z1jc">
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<meta name="client_secret" content="uHbasU3TFAJJrEcQdxApm4ZhrKQL6La7">
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<meta name="client_id" content="camicroscope-test">
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<link rel="stylesheet" href="./apps/landing/main.css" />
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<meta name="viewport" content="width=device-width, initial-scale=1" />

‎config/postgres_db_user_setup.sql‎

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CREATE USER keycloak WITH PASSWORD 'password';
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CREATE DATABASE keycloak;
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GRANT ALL PRIVILEGES ON DATABASE keycloak TO keycloak;
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GRANT ALL PRIVILEGES ON SCHEMA public TO keycloak;
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ALTER USER keycloak WITH SUPERUSER;

‎develop.yml‎

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- ./jwt_keys/:/src/keys/
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- ./config/routes.json:/src/routes.json
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- ./config/contentSecurityPolicy.json:/src/contentSecurityPolicy.json
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- ../camicroscope/:/src/camicroscope/
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environment:
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JWK_URL: "https://www.googleapis.com/oauth2/v3/certs"
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IIP_PATH: "http://ca-iip:8080/fcgi-bin/iipsrv.fcgi"

‎kc_caMicroscope.yml‎

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environment:
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DICOM_PORT: "11112"
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DICOM_UI_PORT: "8042"
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CARACAL_BACK_HOST_PORT: "ca-back:4010"
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CARACAL_BACK_HOST_PORT: "ca-back:4010"
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‎osi_camicroscope.yml‎

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version: '3'
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volumes:
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postgres_data:
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name: postgres_data
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ferret_data:
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name: ferret_data
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networks:
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default:
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name: ferretdb
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services:
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postgres:
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image: ghcr.io/ferretdb/postgres-documentdb:17-0.104.0-ferretdb-2.3.1
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container_name: ca-key-db
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volumes:
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- postgres_data:/var/lib/postgresql/data
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- ./config/postgres_db_user_setup.sql:/docker-entrypoint-initdb.d/init.sql
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environment:
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POSTGRES_DB: postgres
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POSTGRES_USER: ferret
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POSTGRES_PASSWORD: ferretpassword
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restart: always
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logging:
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options:
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max-file: "5"
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max-size: "10m"
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keycloak:
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container_name: ca-key
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image: quay.io/keycloak/keycloak:latest
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command: start-dev
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environment:
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KC_DB: postgres
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KC_DB_URL: jdbc:postgresql://ca-key-db:5432/keycloak
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KC_DB_USERNAME: keycloak
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KC_DB_PASSWORD: password
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KEYCLOAK_ADMIN: admin
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KEYCLOAK_ADMIN_PASSWORD: password
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ports:
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- 8080:8080
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restart: always
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logging:
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options:
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max-file: "5"
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max-size: "10m"
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depends_on:
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- postgres
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ferretdb:
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image: ghcr.io/ferretdb/ferretdb:2.3.1
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container_name: ca-ferretdb
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restart: always
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logging:
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options:
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max-file: "5"
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max-size: "10m"
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environment:
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- FERRETDB_POSTGRESQL_URL=postgresql://ferret:ferretpassword@ca-key-db:5432/postgres
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- FERRETDB_AUTH=0
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volumes:
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- ferret_data:/data/db
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depends_on:
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- postgres
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back:
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build:
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context: "https://github.com/camicroscope/caracal.git#v3.12.0"
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args:
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viewer: "v3.12.1"
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depends_on:
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- "ferretdb"
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ports:
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- "4010:4010"
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container_name: ca-back
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restart: always
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logging:
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options:
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max-file: "5"
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max-size: "10m"
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volumes:
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- ./images/:/images/
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- ./config/login.html:/src/static/login.html
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- ./jwt_keys/:/src/keys/
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- ./config/routes.json:/src/routes.json
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- ./config/contentSecurityPolicy.json:/src/contentSecurityPolicy.json
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environment:
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DISABLE_SEC: "true"
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JWK_URL: "http://ca-back:4010/keycloak/realms/camic/protocol/openid-connect/certs"
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IIP_PATH: "http://ca-iip:8080/fcgi-bin/iipsrv.fcgi"
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MONGO_URI: "mongodb://ca-ferretdb"
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GENERATE_KEY_IF_MISSING: "true"
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iip:
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image: camicroscope/iipimage:version-3.11.0
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container_name: ca-iip
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logging:
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options:
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max-file: "5"
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max-size: "10m"
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restart: always
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volumes:
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- ./images/:/images/
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loader:
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build: "https://github.com/camicroscope/SlideLoader.git#v3.12.0"
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container_name: ca-load
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restart: always
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logging:
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options:
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max-file: "5"
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max-size: "10m"
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volumes:
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- ./images/:/images/
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environment:
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DICOM_PORT: "11112"
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DICOM_UI_PORT: "8042"

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