diff --git a/pyproject.toml b/pyproject.toml index fe4d91d..2ded02f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -28,6 +28,7 @@ classifiers = [ dependencies = [ "aiohttp-retry>=2.8.3", "aiohttp>=3.8.4", + "beautifulsoup4", "httpx", "orjson", "platformdirs", diff --git a/pyst_client/cn/loader.py b/pyst_client/cn/loader.py index 9de7648..88d6101 100644 --- a/pyst_client/cn/loader.py +++ b/pyst_client/cn/loader.py @@ -15,7 +15,7 @@ from pyst_client.cn.rdf import CombinedNomenclature logger = structlog.get_logger("sentier_vocab") - +transport = httpx.AsyncHTTPTransport(retries=5) SAMPLE_CORRESPONDENCE_BY_YEAR = { 2024: [ @@ -80,19 +80,19 @@ def write(self) -> None: logger.info("Adding concept scheme") asyncio.run(self._request(data=data, url_component="/api/v1/concept_schemes/", url_iri=iri)) + logger.info("Adding concepts") data = self.cn.expanded_json_ld_graph(self.cn.concepts(sample=self.sample)) iris = [orjson.loads(obj)["@id"] for obj in data] - increment = 20 - logger.info("Adding concepts") - for index in tqdm(range(0, len(data), increment)): - asyncio.run(self._chunked_request(url_component="/api/v1/concepts/", data=data, url_iris=iris)) + for ds, iri in tqdm(zip(data, iris)): + asyncio.run(self._request(data=ds, url_component="/api/v1/concepts/", url_iri=iri)) data = self.cn.expanded_separate_json_ld_graph( SKOS.broader, self.cn.relationships(kind=SKOS.broader, sample=self.sample), ) logger.info("Adding skos:broader relationships") - asyncio.run(self._chunked_request(data=data, url_component="/api/v1/relationships/")) + for elem in tqdm(data): + asyncio.run(self._request(data=elem, url_component="/api/v1/relationships/")) data = self.cn.expanded_separate_json_ld_graph( SKOS.relatedMatch, @@ -141,7 +141,7 @@ def write(self) -> None: asyncio.run(self._request(data=data, url_component="/api/v1/made_ofs/")) async def _request(self, url_component: str, data: bytes, url_iri: str | None = None) -> httpx.Response: - async with httpx.AsyncClient() as client: + async with httpx.AsyncClient(transport=transport) as client: if not isinstance(data, bytes): raise TypeError @@ -157,7 +157,7 @@ async def _chunked_request(self, url_component: str, data: list[bytes], url_iris if url_iris is None: url_iris = repeat("") - async with httpx.AsyncClient() as client: + async with httpx.AsyncClient(transport=transport) as client: tasks = [] for chunk, iri in zip(data, url_iris): tasks.append( diff --git a/pyst_client/cn/rdf.py b/pyst_client/cn/rdf.py index 9d2e7bc..3056fe9 100644 --- a/pyst_client/cn/rdf.py +++ b/pyst_client/cn/rdf.py @@ -83,7 +83,7 @@ def concepts(self, sample: bool = False) -> Graph: if sample: concept_uris = self._sample_concept_uris() else: - concept_uris = self._concept_uris(self.cs_uri) + concept_uris = self._concept_uris() for subj, verb, obj in self.graph.triples((None, None, None)): if subj not in concept_uris: @@ -122,7 +122,7 @@ def relationships(self, kind: URIRef, sample: bool = False) -> Graph: if sample: concept_uris = self._sample_concept_uris() else: - concept_uris = self._concept_uris(self.cs_uri) + concept_uris = self._concept_uris() for subj, verb, obj in self.graph.triples((None, kind, None)): if subj not in concept_uris: diff --git a/pyst_client/example/Load CN with simple client.ipynb b/pyst_client/example/Load CN with simple client.ipynb new file mode 100644 index 0000000..a740270 --- /dev/null +++ b/pyst_client/example/Load CN with simple client.ipynb @@ -0,0 +1,12289 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 27, + "id": "c0ff911d-e1f1-4b0f-a93d-3e928ba74f26", + "metadata": {}, + "outputs": [], + "source": [ + "from tqdm import tqdm" + ] + }, + { + "cell_type": "code", + "execution_count": 25, + "id": "9b072c62-24fa-4382-82f4-c4aeff951ffe", + "metadata": {}, + "outputs": [], + "source": [ + "import os\n", + "auth = os.environ[\"pyst_auth_token\"]\n", + "assert auth\n", + "\n", + "settings.api_key = auth\n", + "settings.server_url = \"https://vocab.cauldron.ch\"" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "cc4d40fb-99b4-47de-962c-872c8e4bb274", + "metadata": {}, + "outputs": [], + "source": [ + "from pyst_client.cn import CombinedNomenclatureLoader" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "90b84e1f-d354-4bcd-a0e4-0f671f08311f", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\u001b[2m2025-06-09 07:50:36\u001b[0m [\u001b[32m\u001b[1minfo \u001b[0m] \u001b[1mUsing cached CN 2024 file \u001b[0m\n", + "\u001b[2m2025-06-09 07:50:36\u001b[0m [\u001b[32m\u001b[1minfo \u001b[0m] \u001b[1mLoading RDF graph \u001b[0m\n" + ] + } + ], + "source": [ + "cn = CombinedNomenclatureLoader(\n", + " year=2024,\n", + " api_key=auth,\n", + " host=\"https://vocab.cauldron.ch/\",\n", + " sample=False\n", + ")" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "8d3e1cc2-7017-41a2-9e52-b5e067035cfc", + "metadata": {}, + "outputs": [], + "source": [ + "self = cn" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "304632b5-f26c-4299-a5e7-c96f2addd173", + "metadata": {}, + "outputs": [], + "source": [ + "from rdflib.namespace import SKOS\n", + " \n", + "data = self.cn.expanded_separate_json_ld_graph(\n", + " SKOS.broader,\n", + " self.cn.relationships(kind=SKOS.broader, sample=self.sample),\n", + ")" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "5e70e248-6b65-4a3a-a624-e9c088a549cf", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "15012" + ] + }, + "execution_count": 7, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "len(data)" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "id": "4d732e97-8e69-445c-b8df-8214c960cb2e", + "metadata": {}, + "outputs": [], + "source": [ + "import orjson" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "id": "fadbd863-55fa-4a5a-9328-fd0d73d4fa65", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "[{'@id': 'http://data.europa.eu/xsp/cn2024/391211000010',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/391200000080'}]}]" + ] + }, + "execution_count": 11, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "orjson.loads(data[0])" + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "id": "636c9a5b-db97-480b-9938-07d95de3836e", + "metadata": {}, + "outputs": [], + "source": [ + "from pyst_client.simple import *" + ] + }, + { + "cell_type": "code", + "execution_count": 17, + "id": "69086ff0-d93e-4d55-87fe-5e0a27b54b9f", + "metadata": {}, + "outputs": [], + "source": [ + "def chunker(seq, size):\n", + " return (seq[pos:pos + size] for pos in range(0, len(seq), size))" + ] + }, + { + "cell_type": "code", + "execution_count": 28, + "id": "56f93892-377d-4705-a4c3-6f9cbce154ff", + "metadata": {}, + "outputs": [ + { + "name": "stderr", + 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'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/391200000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/292119990080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/292119000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/440396000080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/440391000010'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/722020410080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/722020410010'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/220830300080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/220830300010'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/640192900080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/640192000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/847490000080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/847400000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/870210110010',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/870210000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/830170000080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/830100000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/330124000080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/330124000010'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/110100000080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/110021000090'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/560312100080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/560312000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/292250000080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/292200000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/151419000080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/151411000010'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/151800100080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/151800000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/853620900080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/853620000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/840810230080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/840810230020'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/680710000080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/680700000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/853669300080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/853669000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/200897320010',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/200897120020'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/860721900080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/860721000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/600643000080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/600641000010'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/847290000080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/847200000080'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/291521000080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/291521000010'}]},\n", + " {'@id': 'http://data.europa.eu/xsp/cn2024/842381290080',\n", + " 'http://www.w3.org/2004/02/skos/core#broader': [{'@id': 'http://data.europa.eu/xsp/cn2024/842381210010'}]}]" + ] + }, + "execution_count": 22, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "selection" + ] + }, + { + "cell_type": "code", + "execution_count": 16, + "id": "080846dd-17a4-4b33-a5f5-ac891540ccd3", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "b'[{\"@id\":\"http://data.europa.eu/xsp/cn2024/391211000010\",\"http://www.w3.org/2004/02/skos/core#broader\":[{\"@id\":\"http://data.europa.eu/xsp/cn2024/391200000080\"}]}]'" + ] + }, + "execution_count": 16, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "chunk" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "e494dca1-6b97-4284-b3f4-9448653e046f", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.13.4" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/pyst_client/example/Load ecoinvent metatadata to PyST.ipynb b/pyst_client/example/Load ecoinvent metatadata to PyST.ipynb new file mode 100644 index 0000000..e9079fc --- /dev/null +++ b/pyst_client/example/Load ecoinvent metatadata to PyST.ipynb @@ -0,0 +1,783 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 2, + "id": "a5add077-4505-4903-b382-ce493430ea3a", + "metadata": {}, + "outputs": [], + "source": [ + "from pathlib import Path\n", + "import os\n", + "\n", + "from py_semantic_taxonomy.adapters.routers.validation import MultilingualString\n", + "from py_semantic_taxonomy.domain.constants import SKOS\n", + "from tqdm import tqdm\n", + "import httpx\n", + "import structlog\n", + "import xmltodict\n", + "\n", + "from pyst_client.simple import *\n", + "from pyst_client.simple.client import WriteClient" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "6f89864f-198f-444c-bd23-10e4db5a9f69", + "metadata": {}, + "outputs": [], + "source": [ + "auth = os.environ[\"pyst_auth_token\"]\n", + "assert auth\n", + "\n", + "metadata_39_dir = Path(os.environ[\"ecoinvent_39_metadata_dir\"])\n", + "assert metadata_39_dir.is_dir()\n", + "\n", + "metadata_310_dir = Path(os.environ[\"ecoinvent_310_metadata_dir\"])\n", + "assert metadata_310_dir.is_dir()\n", + "\n", + "metadata_311_dir = Path(os.environ[\"ecoinvent_311_metadata_dir\"])\n", + "assert metadata_311_dir.is_dir()" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "id": "be684c54-8767-42a3-9b88-f5d93189bdc2", + "metadata": {}, + "outputs": [], + "source": [ + "products_311 = xmltodict.parse(open(metadata_311_dir / \"IntermediateExchanges.xml\", \"rb\"))['validIntermediateExchanges']\n", + "products_310 = xmltodict.parse(open(metadata_310_dir / \"IntermediateExchanges.xml\", \"rb\"))['validIntermediateExchanges']\n", + "products_39 = xmltodict.parse(open(metadata_39_dir / \"IntermediateExchanges.xml\", \"rb\"))['validIntermediateExchanges']" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "0ab7bc14-aa50-4af9-8a75-e7b48f0fbd42", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "'3.11'" + ] + }, + "execution_count": 5, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "release = \"{}.{}\".format(products['@majorRelease'], products['@minorRelease'])\n", + "release" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "571d259c-f36c-4752-9aa3-70bfe8f56da8", + "metadata": {}, + "outputs": [], + "source": [ + "# Storing temporarily for this script; use `.set_X` to set permanently\n", + "settings.api_key = auth\n", + "settings.creation_base_url = f\"https://vocab.sentier.dev/products/ecoinvent/{release}/\"\n", + "settings.server_url = \"https://vocab.cauldron.ch\"" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "a7d8a19e-9d11-4e4a-b380-d913517d3da7", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\u001b[2m2025-06-09 07:07:30\u001b[0m [\u001b[32m\u001b[1minfo \u001b[0m] \u001b[1mServer URL https://vocab.cauldron.ch successfully loaded from secrets directory\u001b[0m\n", + "\u001b[2m2025-06-09 07:07:30\u001b[0m [\u001b[32m\u001b[1minfo \u001b[0m] \u001b[1mDefault language `en` successfully loaded from secrets directory\u001b[0m\n", + "\u001b[2m2025-06-09 07:07:30\u001b[0m [\u001b[32m\u001b[1minfo \u001b[0m] \u001b[1mServer URL `https://vocab.cauldron.ch` is healthy and reachable\u001b[0m\n", + "\u001b[2m2025-06-09 07:07:30\u001b[0m [\u001b[32m\u001b[1minfo \u001b[0m] \u001b[1mAPI key successfully loaded from secrets directory\u001b[0m\n", + "\u001b[2m2025-06-09 07:07:30\u001b[0m [\u001b[32m\u001b[1minfo \u001b[0m] \u001b[1mCreation base URL successfully loaded from secrets directory\u001b[0m\n" + ] + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 7, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "cs = ConceptScheme.create(\n", + " pref_labels=[f\"ecoinvent Products {release}\"],\n", + " version=release,\n", + " notations=[f\"ei-products-{release}\"],\n", + " definitions=[\"Set of ecoinvent products (intermediate exchanges) extracted from publicly available metadata\"],\n", + " creators=[{\"@id\": \"https://ecoinvent.org/\"}],\n", + ")\n", + "cs.save()" + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "id": "5e4459ac-76af-4817-bb4f-6a1081aaaa6f", + "metadata": {}, + "outputs": [], + "source": [ + "def get_multilingual_strings(obj: dict, key: str, secondary_key: str | None = None) -> list[MultilingualString]:\n", + " if key not in obj:\n", + " return []\n", + " elif secondary_key and secondary_key in obj[key]:\n", + " data = obj[key][secondary_key]\n", + " elif secondary_key and secondary_key not in obj[key]:\n", + " return []\n", + " else:\n", + " data = obj[key]\n", + " if isinstance(data, list):\n", + " return [\n", + " MultilingualString(**{\"@language\": elem['@xml:lang'], \"@value\": elem['#text']})\n", + " for elem in data\n", + " if '#text' in elem\n", + " ]\n", + " else:\n", + " assert isinstance(data, dict) and '@xml:lang' in data\n", + " return (\n", + " [MultilingualString(**{\"@language\": data['@xml:lang'], \"@value\": data['#text']})] \n", + " if '#text' in data \n", + " else []\n", + " )" + ] + }, + { + "cell_type": "code", + "execution_count": 9, + "id": "75a9ec73-e380-4c54-8147-462ce780a1fb", + "metadata": {}, + "outputs": [], + "source": [ + "concepts = {}" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "id": "5d05e30e-288e-4497-88f5-91643b3c8dc2", + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|█████████████████████████████████████████| 4309/4309 [06:05<00:00, 11.80it/s]\n" + ] + } + ], + "source": [ + "for concept in tqdm(products['intermediateExchange']):\n", + " concept_obj = Concept.create(\n", + " concept_scheme=cs,\n", + " pref_labels=get_multilingual_strings(concept, 'name'),\n", + " notations=[concept[\"@id\"]],\n", + " definitions=get_multilingual_strings(concept, 'comment'),\n", + " extra={\n", + " f\"{SKOS}scopeNote\": get_multilingual_strings(concept, 'productInformation', 'text'),\n", + " },\n", + " id_=f\"https://vocab.sentier.dev/products/ecoinvent/{release}/{concept[\"@id\"]}\"\n", + " )\n", + " concept_obj.types.append(\"http://ontology.bonsai.uno/core#FlowObject\")\n", + " concept_obj.save()\n", + " concepts[concept[\"@id\"]] = concept_obj" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "26bb2c68-3ff0-478a-81f7-7c8895539e71", + "metadata": {}, + "outputs": [], + "source": [ + "products['intermediateExchange'][0]" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "f40f7f58-fb98-4f95-9d06-d07db8a32bb4", + "metadata": {}, + "outputs": [], + "source": [ + "\"https%3A//vocab.sentier.dev/products/cpc/2.1/CPCv2.1/871\"" + ] + }, + { + "cell_type": "code", + "execution_count": 14, + "id": "df77294d-5ece-4951-ad94-8cbc504059f6", + "metadata": {}, + "outputs": [], + "source": [ + "cs_310 = ConceptScheme.get_one(\"https://vocab.sentier.dev/products/ecoinvent/3.10/ei-products-3.10\")\n", + "cs_311 = ConceptScheme.get_one(\"https://vocab.sentier.dev/products/ecoinvent/3.11/ei-products-3.11\")\n", + "cs_39 = ConceptScheme.get_one(\"https://vocab.sentier.dev/products/ecoinvent/3.9/ei-products-3.9\")\n", + "cpc = ConceptScheme.get_one(\"https://vocab.sentier.dev/products/cpc/2.1/\")\n", + "cn = ConceptScheme.get_one(\"http://data.europa.eu/xsp/cn2024/cn2024\")" + ] + }, + { + "cell_type": "code", + "execution_count": 15, + "id": "f7c967e7-0e61-4b6e-8117-22cf22cdc93a", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "'https://vocab.sentier.dev/products/ecoinvent/3.11/ei-products-3.11-CPCv2.1'" + ] + }, + "execution_count": 15, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "correspondence = Correspondence.create(\n", + " compares=[cs_311, cpc],\n", + " pref_labels=[\"ecoinvent-3.11-CPC-2.1\"],\n", + " version=\"2025.1\",\n", + " definitions=[\"\"],\n", + ")\n", + "correspondence.save()\n", + "correspondence.id_" + ] + }, + { + "cell_type": "code", + "execution_count": 43, + "id": "0d8d72a5-16cf-4a5a-b8f5-38718f1df621", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "'https://vocab.sentier.dev/products/correspondence/ei-products-3.11-CN-2024'" + ] + }, + "execution_count": 43, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "correspondence_e11_cn = Correspondence.create(\n", + " compares=[cs_311, cn],\n", + " pref_labels=[\"ecoinvent-3.11-CN-2024\"],\n", + " version=\"2025.1\",\n", + " definitions=[\"\"],\n", + " id_=\"https://vocab.sentier.dev/products/correspondence/ei-products-3.11-CN-2024\"\n", + ")\n", + "correspondence_e11_cn.save()\n", + "correspondence_e11_cn.id_" + ] + }, + { + "cell_type": "code", + "execution_count": 47, + "id": "54f7b26e-0861-4a64-b09f-a945587c7f79", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "'https://vocab.sentier.dev/products/correspondence/ei-products-3.10-CN-2024'" + ] + }, + "execution_count": 47, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "correspondence_e10_cn = Correspondence.create(\n", + " compares=[cs_310, cn],\n", + " pref_labels=[\"ecoinvent-3.10-CN-2024\"],\n", + " version=\"2025.1\",\n", + " definitions=[\"\"],\n", + " id_=\"https://vocab.sentier.dev/products/correspondence/ei-products-3.10-CN-2024\"\n", + ")\n", + "correspondence_e10_cn.save()\n", + "correspondence_e10_cn.id_" + ] + }, + { + "cell_type": "code", + "execution_count": 36, + "id": "bedde8d6-16ab-4a47-a9a7-ff395e58ae04", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "'https://vocab.sentier.dev/products/ecoinvent/3.11/ei-products-3.10-CPCv2.1'" + ] + }, + "execution_count": 36, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "correspondence_310 = Correspondence.create(\n", + " compares=[cs_310, cpc],\n", + " pref_labels=[\"ecoinvent-3.10-CPC-2.1\"],\n", + " version=\"2025.1\",\n", + " definitions=[\"\"],\n", + ")\n", + "correspondence_310.save()\n", + "correspondence_310.id_" + ] + }, + { + "cell_type": "code", + "execution_count": 53, + "id": "2b1682c3-87c2-4ff4-aa31-3ef107bd3c7c", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "'https://vocab.sentier.dev/products/ecoinvent/3.11/ei-products-3.10-ei-products-3.11'" + ] + }, + "execution_count": 53, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "correspondence_310_311 = Correspondence.create(\n", + " compares=[cs_310, cs_311],\n", + " pref_labels=[\"ecoinvent-3.10-ecoinvent-3.11\"],\n", + " version=\"2025.1\",\n", + " definitions=[\"\"],\n", + ")\n", + "correspondence_310_311.save()\n", + "correspondence_310_311.id_" + ] + }, + { + "cell_type": "code", + "execution_count": 23, + "id": "27d3827d-a2df-433b-99ef-e9f913fa9ed6", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "4597" + ] + }, + "execution_count": 23, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "cpc_concepts = Concept.get_many(cpc.id_)\n", + "len(cpc_concepts)" + ] + }, + { + "cell_type": "code", + "execution_count": 25, + "id": "f94f78fd-0ed1-480e-9bc2-d0caabaad9f9", + "metadata": {}, + "outputs": [], + "source": [ + "cpc_ids = {obj.id_ for obj in cpc_concepts}" + ] + }, + { + "cell_type": "code", + "execution_count": 33, + "id": "e799912c-dda8-4443-aea0-c3ace2d08966", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "15033" + ] + }, + "execution_count": 33, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "cn_concepts = Concept.get_many(cn.id_, timeout=20)\n", + "len(cn_concepts)" + ] + }, + { + "cell_type": "code", + "execution_count": 34, + "id": "f64d000d-e84a-4ee7-9f12-08295638197b", + "metadata": {}, + "outputs": [], + "source": [ + "cn_ids = {obj.id_ for obj in cn_concepts}" + ] + }, + { + "cell_type": "code", + "execution_count": 35, + "id": "653faae1-e5e6-4e67-bad3-c38bdc4751f3", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "'http://data.europa.eu/xsp/cn2024/010011000090'" + ] + }, + "execution_count": 35, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "cn_concepts[0].id_" + ] + }, + { + "cell_type": "code", + "execution_count": 18, + "id": "790301af-2215-4040-be9f-c0b7c08aae19", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "{'@id': '6e19db2a-0fe3-45d7-897b-002c8dae678a',\n", + " '@unitId': '487df68b-4994-4027-8fdc-a4dc298257b7',\n", + " 'name': {'@xml:lang': 'en',\n", + " '#text': 'residues, MSWI[F]-WWT, WW from black chrome coating'},\n", + " 'unitName': {'@xml:lang': 'en', '#text': 'kg'},\n", + " 'classification': [{'@classificationId': 'ee3238ec-ca7a-4ddc-af1b-e7c35957b9b6',\n", + " 'classificationSystem': {'@xml:lang': 'en',\n", + " '#text': 'By-product classification'},\n", + " 'classificationValue': {'@xml:lang': 'en', '#text': 'Waste'}},\n", + " {'@classificationId': '6d3f4523-869c-45b8-a1cc-67ff0e657c80',\n", + " 'classificationSystem': {'@xml:lang': 'en', '#text': 'CPC'},\n", + " 'classificationValue': {'@xml:lang': 'en',\n", + " '#text': '39320: Ash and residue (except from the manufacture of iron or steel), containing metals or metallic compounds, excep[…]'}},\n", + " {'@classificationId': 'bc50c3a4-f699-5f17-a9fc-040ff213a598',\n", + " 'classificationSystem': {'@xml:lang': 'en', '#text': 'HS2017'},\n", + " 'classificationValue': {'@xml:lang': 'en',\n", + " '#text': '262110: Slag and ash; ash and residues from the incineration of municipal waste'}}],\n", + " 'property': [{'@propertyId': '38f94dd1-d5aa-41b8-b182-c0c42985d9dc',\n", + " '@amount': '0.0',\n", + " 'comment': {'@xml:lang': 'en',\n", + " '#text': 'Wastes are assumed to have zero economic value.'}},\n", + " {'@propertyId': '48c987bb-3144-4872-b5c7-b1389c40be25',\n", + " '@amount': '0.0',\n", + " '@isDefiningValue': 'false',\n", + " 'comment': {'@xml:lang': 'en',\n", + " '#text': 'Non combustible products are assumed to have an LHV equal to zero (0).'}},\n", + " {'@propertyId': 'dbf41b1b-c7b8-4d5e-b39c-f858eb868df5',\n", + " '@amount': '0.244372'},\n", + " {'@propertyId': 'a9358458-9724-4f03-b622-106eda248916', '@amount': '0.0'},\n", + " {'@propertyId': 'f53a5dbc-3bd3-4570-adff-b00790ea3ffc',\n", + " '@amount': '2.97918E-07'},\n", + " {'@propertyId': '3a0af1d6-04c3-41c6-a3da-92c4f61e0eaa', '@amount': '1.0'},\n", + " {'@propertyId': '6393c14b-db78-445d-a47b-c0cb866a1b25', '@amount': '0.0'},\n", + " {'@propertyId': '67f102e2-9cb6-4d20-aa16-bf74d8a03326', '@amount': '1.0'},\n", + " {'@propertyId': 'e1d2c19b-3a97-4f52-a83f-fe88400452c2',\n", + " '@amount': '0.309967'},\n", + " {'@propertyId': 'ad7781c7-5dc2-4421-b182-e1fd4cef7fa5',\n", + " '@amount': '0.00877594'},\n", + " {'@propertyId': '33f96fe7-39da-47ca-837f-f2c311681d1b',\n", + " '@amount': '0.26421'},\n", + " {'@propertyId': 'c74c3729-e577-4081-b572-a283d2561a75',\n", + " '@amount': '0.000504036'},\n", + " {'@propertyId': 'e5507d89-78ad-4746-900c-b9afa5a62ea6',\n", + " '@amount': '0.05005'},\n", + " {'@propertyId': '56f09738-8225-4bdc-91d2-39ee6328f0ee',\n", + " '@amount': '0.00346631'},\n", + " {'@propertyId': 'f767b36f-62bf-4458-b694-ecbefd2ab970',\n", + " '@amount': '0.0184933'},\n", + " {'@propertyId': '6d9e1462-80e3-4f10-b3f4-71febd6f1168', '@amount': '0.0'},\n", + " {'@propertyId': '0132d97c-5f19-4397-9197-59ab801b10cf',\n", + " '@amount': '0.100161'}],\n", + " 'productInformation': {'text': {'@xml:lang': 'en',\n", + " '@index': '0',\n", + " '#text': \"residues, MSWI[F]-WWT, WW from black chrome coating' is a solid waste under the category of industrial wastes. These residues are produced exclusively in municipal solid waste incineration (MSWI) with fly ash extraction (F) of 'sewage sludge, 70% water, WWT, WW from black chrome coating' that in turn is produced exclusively from the wastewater treatment (WWT) of 'WW from black chrome coating'. The composition of the residues, is specific and dependent on the original composition of 'WW from black chrome coating'.\\n\\n'residues, MSWI[F]-WWT, WW from black chrome coating' contain the following fractions: 100% incineration residues. By the database default (and per unit of reference product),'residues, MSWI[F]-WWT, WW from black chrome coating' has 0% water on wet mass basis (100% dry matter) and Carbon present is of only fossil origin (0.05% on a dry matter basis). It has no heating value.\\n\\nThis kind of by-product (recyclable or waste) is generated in a specific treatment process, and as such is not intended to be used as for modelling waste outputs from other activities.\\n\\nIn the ecoinvent database, treatment option/s for this by-product include: deposition (residual material landfill). Based on the aforementioned treatments, this by-product receives, it is a hazardous waste. \\n\\nThis by-product can be modelled on two levels: treatment activity and market activity. The former one refers to the specific technology treating the by-product while the latter level represents a mix of treatments. Users are encouraged to inspect the modelling assumptions of the treatment activities and when selecting the market to additionally inspect the treatment mix. \\n\\nCollection and transportation of this by-product is accounted in the respective market activity, users are advised to inspect and modify the average transportation distances for a case specific modelling.\"}}}" + ] + }, + "execution_count": 18, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "products_311['intermediateExchange'][1]" + ] + }, + { + "cell_type": "code", + "execution_count": 37, + "id": "bee64ab6-4294-4835-a627-b6fd0a7d41f8", + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|█████████████████████████████████████████| 4057/4057 [06:24<00:00, 10.55it/s]\n" + ] + } + ], + "source": [ + "for product in tqdm(products_310['intermediateExchange']):\n", + " try:\n", + " cpc_label = next(obj['classificationValue']['#text'].split(\":\")[0] for obj in product['classification'] if obj.get(\"classificationSystem\", {}).get(\"#text\") == 'CPC')\n", + " except:\n", + " continue\n", + " cpc_iri = f\"https://vocab.sentier.dev/products/cpc/2.1/CPCv2.1/{cpc_label}\"\n", + " if cpc_iri in cpc_ids:\n", + " assoc = Association.create(\n", + " correspondence=correspondence_310,\n", + " source_concepts=[\n", + " # Can also be a `Concept` instance\n", + " {\"@id\": f'https://vocab.sentier.dev/products/ecoinvent/3.10/{product[\"@id\"]}'}\n", + " ], \n", + " target_concepts=[\n", + " {\"@id\": cpc_iri}\n", + " ],\n", + " )\n", + " assoc.save()" + ] + }, + { + "cell_type": "code", + "execution_count": 32, + "id": "7b053047-61c7-4c2f-9c8a-36f178ce08a3", + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|█████████████████████████████████████████| 4309/4309 [06:39<00:00, 10.79it/s]\n" + ] + } + ], + "source": [ + "for product in tqdm(products_311['intermediateExchange']):\n", + " try:\n", + " cpc_label = next(obj['classificationValue']['#text'].split(\":\")[0] for obj in product['classification'] if obj.get(\"classificationSystem\", {}).get(\"#text\") == 'CPC')\n", + " except:\n", + " continue\n", + " cpc_iri = f\"https://vocab.sentier.dev/products/cpc/2.1/CPCv2.1/{cpc_label}\"\n", + " if cpc_iri in cpc_ids:\n", + " assoc = Association.create(\n", + " correspondence=correspondence,\n", + " source_concepts=[\n", + " # Can also be a `Concept` instance\n", + " {\"@id\": f'https://vocab.sentier.dev/products/ecoinvent/3.11/{product[\"@id\"]}'}\n", + " ], \n", + " target_concepts=[\n", + " {\"@id\": cpc_iri}\n", + " ],\n", + " )\n", + " assoc.save()" + ] + }, + { + "cell_type": "code", + "execution_count": 41, + "id": "688f879d-19c3-4944-8885-643803e07ad5", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "['http://data.europa.eu/xsp/cn2024/080410000080']" + ] + }, + "execution_count": 41, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "[x for x in cn_ids if x.startswith(\"http://data.europa.eu/xsp/cn2024/080410\")]" + ] + }, + { + "cell_type": "code", + "execution_count": 48, + "id": "ff6aa241-dc11-478d-a760-c215f1b466fd", + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|█████████████████████████████████████████| 4057/4057 [08:39<00:00, 7.81it/s]\n" + ] + } + ], + "source": [ + "import uuid\n", + "\n", + "def u():\n", + " return uuid.uuid4().hex\n", + "\n", + "\n", + "for product in tqdm(products_310['intermediateExchange']):\n", + " try:\n", + " cn_label = next(obj['classificationValue']['#text'].split(\":\")[0] for obj in product['classification'] if obj.get(\"classificationSystem\", {}).get(\"#text\") == 'HS2017')\n", + " except:\n", + " continue\n", + " cn_iris = sorted([x for x in cn_ids if x.startswith(f\"http://data.europa.eu/xsp/cn2024/{cn_label}\")])\n", + " if not cn_iris:\n", + " continue\n", + " assoc = Association.create(\n", + " correspondence=correspondence_e10_cn,\n", + " source_concepts=[\n", + " {\"@id\": f'https://vocab.sentier.dev/products/ecoinvent/3.10/{product[\"@id\"]}'}\n", + " ], \n", + " target_concepts=[\n", + " {\"@id\": cn_iris[0]}\n", + " ],\n", + " id_=f\"https://vocab.sentier.dev/products/correspondence/ei-products-3.10-CN-2024/{u()}\"\n", + " )\n", + " assoc.save()\n", + "\n", + " assoc = Association.create(\n", + " correspondence=correspondence_e10_cn,\n", + " source_concepts=[\n", + " {\"@id\": cn_iris[0]}\n", + " ], \n", + " target_concepts=[\n", + " {\"@id\": f'https://vocab.sentier.dev/products/ecoinvent/3.10/{product[\"@id\"]}'}\n", + " ],\n", + " id_=f\"https://vocab.sentier.dev/products/correspondence/ei-products-3.10-CN-2024/{u()}\"\n", + " )\n", + " assoc.save() " + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "b979c523-af5e-403e-9470-c4ff15cd0133", + "metadata": {}, + "outputs": [], + "source": [ + "https://vocab.sentier.dev/products/ecoinvent/3.11/ei-products-3.10-CPCv2.1'" + ] + }, + { + "cell_type": "code", + "execution_count": 52, + "id": "c108e435-85c8-47e0-8f8c-46fa9152048e", + "metadata": {}, + "outputs": [], + "source": [ + "ids_311 = {obj[\"@id\"] for obj in products_311['intermediateExchange']}\n", + "ids_310 = {obj[\"@id\"] for obj in products_310['intermediateExchange']}" + ] + }, + { + "cell_type": "code", + "execution_count": 55, + "id": "182915cf-e622-4fb1-8d71-414755e9906e", + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|█████████████████████████████████████████| 4309/4309 [16:59<00:00, 4.23it/s]\n" + ] + } + ], + "source": [ + "import uuid\n", + "\n", + "def u():\n", + " return uuid.uuid4().hex\n", + "\n", + "\n", + "for id_311 in tqdm(ids_311):\n", + " if not id_311 in ids_310:\n", + " continue\n", + "\n", + " assoc = Association.create(\n", + " correspondence=correspondence_310_311,\n", + " source_concepts=[\n", + " {\"@id\": f'https://vocab.sentier.dev/products/ecoinvent/3.11/{id_311}'}\n", + " ], \n", + " target_concepts=[\n", + " {\"@id\": f'https://vocab.sentier.dev/products/ecoinvent/3.10/{id_311}'}\n", + " ],\n", + " id_=f\"https://vocab.sentier.dev/products/ecoinvent/3.11/ei-products-3.10-ei-products-3.11/{u()}\"\n", + " )\n", + " assoc.save()\n", + "\n", + " assoc = Association.create(\n", + " correspondence=correspondence_310_311,\n", + " source_concepts=[\n", + " {\"@id\": f'https://vocab.sentier.dev/products/ecoinvent/3.10/{id_311}'}\n", + " ], \n", + " target_concepts=[\n", + " {\"@id\": f'https://vocab.sentier.dev/products/ecoinvent/3.11/{id_311}'}\n", + " ],\n", + " id_=f\"https://vocab.sentier.dev/products/ecoinvent/3.11/ei-products-3.10-ei-products-3.11/{u()}\"\n", + " )\n", + " assoc.save()\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "a6fa63cd-e7ac-4a3e-94d6-3a047fc49818", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.13.4" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/pyst_client/simple/classes/api_base.py b/pyst_client/simple/classes/api_base.py index 304aca2..5cd0a4a 100644 --- a/pyst_client/simple/classes/api_base.py +++ b/pyst_client/simple/classes/api_base.py @@ -1,13 +1,23 @@ import webbrowser from urllib.parse import urljoin +from typing import Any import orjson from py_semantic_taxonomy.domain.url_utils import get_full_api_path +from pydantic import BaseModel from pyst_client.simple.client import APIError, get_read_client, get_write_client from pyst_client.simple.settings import settings +def handle_custom_types(obj: Any) -> dict: + """Function to pass to `orjson` [default](https://github.com/ijl/orjson?tab=readme-ov-file#default) + serialization. Handles Pydantic classes.""" + if isinstance(obj, BaseModel): + return obj.model_dump(mode='json') + raise TypeError + + class APIBase: @property def api_url(self) -> str: @@ -21,7 +31,7 @@ def open_new_tab(self) -> None: webbrowser.open_new_tab(self.web_url) def json(self) -> bytes: - return orjson.dumps(self.to_json_ld()) + return orjson.dumps(self.to_json_ld(), default=handle_custom_types) def save(self, already_exists: bool = False) -> None: client = get_write_client() diff --git a/pyst_client/simple/classes/relationship.py b/pyst_client/simple/classes/relationship.py index 2b3b8e2..37a420c 100644 --- a/pyst_client/simple/classes/relationship.py +++ b/pyst_client/simple/classes/relationship.py @@ -65,6 +65,9 @@ def create_many( # Validation [req.Relationship(**obj.to_json_ld()) for obj in relationships] + if not relationships: + return [] + errors = True while errors: try: @@ -78,6 +81,8 @@ def create_many( if err.status_code != 409 or not skip_duplicates: raise err relationships = remove_duplicates(data=relationships, message=str(err)) + if not relationships: + break return relationships @classmethod diff --git a/pyst_client/simple/client.py b/pyst_client/simple/client.py index 144efbb..d6dfb57 100644 --- a/pyst_client/simple/client.py +++ b/pyst_client/simple/client.py @@ -8,6 +8,7 @@ from pyst_client.simple.settings import settings logger = structlog.get_logger("pyst-client") +transport = httpx.HTTPTransport(retries=5) class APIError(Exception): @@ -63,6 +64,7 @@ def client(self) -> httpx.Client: "Content-Type": "application/json", "x-pyst-auth-token": settings.api_key, }, + transport=transport, ) def check_error(self, response: httpx.Response) -> None: diff --git a/pyst_client/units/__init__.py b/pyst_client/units/__init__.py new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/pyst_client/units/__init__.py @@ -0,0 +1 @@ + diff --git a/pyst_client/units/data/extra-data.ttl b/pyst_client/units/data/extra-data.ttl new file mode 100644 index 0000000..110b202 --- /dev/null +++ b/pyst_client/units/data/extra-data.ttl @@ -0,0 +1,410 @@ +@prefix qudt: . +@prefix dcterms: . +@prefix rdf: . +@prefix rdfs: . +@prefix skos: . +@prefix xsd: . +@prefix sou: . + +# TimePerArea (SEC-PER-M2 reference unit) + + a skos:Concept ; + dcterms:description "\"Time per Area\" is a measure of the time spent per unit area; commonly used for farming."^^qudt:LatexString ; + qudt:applicableUnit ; + qudt:applicableUnit ; + qudt:hasDimensionVector ; + rdfs:isDefinedBy ; + skos:prefLabel "Time per Area"@en ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 1.0 ; + qudt:conversionMultiplierSN 1e+00 ; + qudt:hasDimensionVector ; + qudt:hasQuantityKind ; + skos:broader ; + skos:definition "Second per square metre"^^xsd:string ; + skos:inScheme ; + skos:notation "s/m²"^^qudt:symbol, + "s.m-2"^^qudt:ucumCode ; + skos:prefLabel "Second per square metre"@en ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 0.36 ; + qudt:conversionMultiplierSN 3.6e-1 ; + qudt:hasDimensionVector ; + skos:broader ; + skos:definition "Hours per hectare"^^xsd:string ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "h/ha"^^qudt:symbol, + "h.har-1"^^qudt:ucumCode ; + skos:prefLabel "Hours per hectare"@en . + +# AreaTime (M2-SEC reference unit) + + a skos:Concept ; + qudt:hasDimensionVector ; + skos:definition "Occupation or use of a given are over a period of time."^^rdf:HTML ; + qudt:applicableUnit ; + qudt:applicableUnit ; + skos:exactMatch ; + rdfs:isDefinedBy ; + skos:inScheme ; + skos:prefLabel "Area Time"@en ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 1.0 ; + qudt:conversionMultiplierSN 1e+0 ; + qudt:hasDimensionVector ; + qudt:hasQuantityKind ; + skos:broader ; + skos:definition "Square meter-second"^^xsd:string ; + skos:inScheme ; + skos:notation "m2s"^^qudt:symbol, + "m2.s"^^qudt:ucumCode ; + skos:prefLabel "Square metre second"@en-GB , + "Square meter second"@en-US ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 31557600.0 ; + qudt:conversionMultiplierSN 3.15576E7 ; + qudt:hasDimensionVector ; + skos:broader ; + skos:definition "Square meter-year"^^xsd:string ; + skos:inScheme ; + skos:notation "m2a"^^qudt:symbol, + "m2.a"^^qudt:ucumCode ; + skos:prefLabel "Square metre year"@en-GB, + "Square meter year"@en-US ; +. + +# PassengerTransport (PERSON-M reference unit) + + a skos:Concept ; + dcterms:description "\"Passenger Transport\" is a measure of passenger transport, commonly expressed in person kilometers."^^qudt:LatexString ; + qudt:applicableUnit ; + qudt:applicableUnit ; + qudt:hasDimensionVector ; + rdfs:isDefinedBy ; + skos:prefLabel "Passenger transport"@en ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 1.0 ; + qudt:conversionMultiplierSN 1e+0 ; + qudt:hasDimensionVector ; + qudt:hasQuantityKind ; + skos:broader ; + skos:definition "Transport of one person over one meter. Does not depend on mass of person or duration of transport."^^xsd:string ; + skos:inScheme ; + skos:notation "personm"^^qudt:symbol ; + skos:prefLabel "Person meter"@en-US, + "Person metre"@en-GB ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 1000.0 ; + qudt:conversionMultiplierSN 1e+3 ; + qudt:hasDimensionVector ; + skos:broader ; + skos:definition "Transport of one person over one kilometer. Does not depend on mass of person or duration of transport."^^xsd:string ; + skos:inScheme ; + skos:notation "personkm"^^qudt:symbol ; + skos:prefLabel "Person kilometer"@en-US, + "Person kilometre"@en-GB ; +. + +# LengthTime (M-SEC reference unit) + + a skos:Concept ; + dcterms:description "\"Length Time\" is a measure of length over time, used for example for maintenance of transport networks."^^qudt:LatexString ; + qudt:applicableUnit ; + qudt:applicableUnit ; + qudt:hasDimensionVector ; + rdfs:isDefinedBy ; + skos:prefLabel "Length Time"@en ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 1.0 ; + qudt:conversionMultiplierSN 1e+0 ; + qudt:hasDimensionVector ; + qudt:hasQuantityKind ; + skos:broader ; + skos:definition "Meter over one second"^^xsd:string ; + skos:inScheme ; + skos:notation "ms"^^qudt:symbol, + "m.s"^^qudt:ucumCode ; + skos:prefLabel "Meter second"@en-US, + "Metre second"@en-GB ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 86400.0 ; + qudt:conversionMultiplierSN 8.64e+4 ; + qudt:hasDimensionVector ; + skos:broader ; + skos:definition "Meter over one year"^^xsd:string ; + skos:inScheme ; + skos:notation "ma"^^qudt:symbol, + "m.a"^^qudt:ucumCode ; + skos:prefLabel "Meter year"@en-US, + "Metre year"@en-GB ; +. + +# MassTime (KiloGM-SEC reference unit) + + a skos:Concept ; + dcterms:description "\"Mass Time\" is a measure of mass times time, used for example for storage."^^qudt:LatexString ; + qudt:applicableUnit ; + qudt:applicableUnit ; + qudt:hasDimensionVector ; + rdfs:isDefinedBy ; + skos:prefLabel "Mass Time"@en ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 1.0 ; + qudt:conversionMultiplierSN 1e+0 ; + qudt:hasDimensionVector ; + qudt:hasQuantityKind ; + skos:broader ; + skos:definition "Kilogram over one second"^^xsd:string ; + skos:inScheme ; + skos:notation "kgs"^^qudt:symbol, + "kg.s"^^qudt:ucumCode ; + skos:prefLabel "Kilogram second"@en . + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 86400.0 ; + qudt:conversionMultiplierSN 8.64e+4 ; + qudt:hasDimensionVector ; + skos:broader ; + skos:definition "Kilogram over one day"^^xsd:string ; + skos:inScheme ; + skos:notation "kgd"^^qudt:symbol, + "kg.d"^^qudt:ucumCode ; + skos:prefLabel "Kilogram day"@en . + +# VolumeTime (M3-SEC reference unit) + + a skos:Concept ; + dcterms:description "\"Volume Time\" is a measure of volume over time, used for example for storage."^^qudt:LatexString ; + qudt:applicableUnit ; + qudt:applicableUnit ; + qudt:applicableUnit ; + qudt:hasDimensionVector ; + rdfs:isDefinedBy ; + skos:prefLabel "Volume Time"@en ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 1.0 ; + qudt:conversionMultiplierSN 1e+0 ; + qudt:hasDimensionVector ; + qudt:hasQuantityKind ; + skos:broader ; + skos:definition "One cubic meter over one second"^^xsd:string ; + skos:inScheme ; + skos:notation "m3s"^^qudt:symbol, + "m3.s"^^qudt:ucumCode ; + skos:prefLabel "Cubic metre second"@en-GB, + "Cubic meter second"@en-US ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 86.4 ; + qudt:conversionMultiplierSN 8.64e+1 ; + qudt:hasDimensionVector ; + skos:broader ; + skos:definition "One liter over one day"^^xsd:string ; + skos:inScheme ; + skos:notation "ld"^^qudt:symbol, + "l.d"^^qudt:ucumCode ; + skos:prefLabel "Litre day"@en-GB, + "Liter day"@en-US ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 31557600.0 ; + qudt:conversionMultiplierSN 3.15576E7 ; + qudt:hasDimensionVector ; + skos:broader ; + skos:definition "One cubic meter over one year"^^xsd:string ; + skos:inScheme ; + skos:notation "m3a"^^qudt:symbol, + "m3.a"^^qudt:ucumCode ; + skos:prefLabel "Cubic metre year"@en-GB, + "Cubic meter year"@en-US ; +. + +# TimePerVolume (SEC-PER-M3 reference unit) + + a skos:Concept ; + dcterms:description "\"Time per Volume\" is a measure of the time spent per unit volume."^^qudt:LatexString ; + qudt:applicableUnit ; + qudt:applicableUnit ; + qudt:hasDimensionVector ; + rdfs:isDefinedBy ; + skos:prefLabel "Time per Volume"@en ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 1.0 ; + qudt:conversionMultiplierSN 1e+00 ; + qudt:hasDimensionVector ; + qudt:hasQuantityKind ; + skos:broader ; + skos:definition "Second per cubic metre"^^xsd:string ; + skos:inScheme ; + skos:notation "s/m3"^^qudt:symbol, + "s.m-3"^^qudt:ucumCode ; + skos:prefLabel "Second per cubic metre"@en-GB, + "Second per cubic meter"@en-US ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 3600.0 ; + qudt:conversionMultiplierSN 3.6e+3 ; + qudt:hasDimensionVector ; + skos:broader ; + skos:exactMatch ; + skos:definition "Hour per cubic metre"^^xsd:string ; + skos:inScheme ; + skos:notation "h/m3"^^qudt:symbol, + "h.m-3"^^qudt:ucumCode ; + skos:prefLabel "Hour per cubic metre"@en-GB, + "Hour per cubic meter"@en-US ; +. + +# Additional LengthMass units + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 1000000.0 ; + qudt:conversionMultiplierSN 1e+6 ; + qudt:hasDimensionVector ; + skos:broader ; + skos:definition "One metric tonne carried over a distance of one kilometer"^^xsd:string ; + skos:inScheme ; + skos:notation "tkm"^^qudt:symbol, + "TNE.km"^^qudt:ucumCode ; + skos:note "Commonly used in freight calculations" ; + skos:prefLabel "Tonne (metric) kilometer"@en-US, + "Tonne (metric) kilometre"@en-GB ; +. + + a skos:Concept ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:conversionMultiplier 1000.0 ; + qudt:conversionMultiplierSN 1e+3 ; + qudt:hasDimensionVector ; + skos:broader ; + skos:definition "One kilogram carried over a distance of one kilometer"^^xsd:string ; + skos:inScheme ; + skos:notation "kgkm"^^qudt:symbol, + "kg.km"^^qudt:ucumCode ; + skos:prefLabel "Kilogram kilometer"@en-US, + "Kilogram kilometre"@en-GB ; +. + +# Additional SpecificEnergy units (J-PER-KiloGM reference unit) + + a skos:Concept ; + qudt:conversionMultiplier 3.6 ; + qudt:conversionMultiplierSN 3.6E0 ; + qudt:hasDimensionVector ; + skos:broader ; + skos:broaderTransitive , + ; + skos:definition "Kilowatt hour per Kilogram"^^xsd:string ; + skos:inScheme ; + skos:notation "kW·h/kg"^^qudt:symbol, + "kW.h.kg-1"^^qudt:ucumCode, + "kW.h/kg"^^qudt:ucumCode; + skos:prefLabel "Kilowatt-hour per Kilogram"@en . + + a skos:Concept ; + qudt:applicableSystem ; + qudt:conversionMultiplier 1055.6 ; + qudt:conversionMultiplierSN 1.0556e+3 ; + qudt:hasDimensionVector ; + skos:broader ; + skos:broaderTransitive , + ; + skos:definition "British Thermal Unit (thermochemical definition) per Kilogram"^^xsd:string ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "Btu{Th}/kg"^^qudt:symbol, + "[Btu_Th].[kg]-1"^^qudt:ucumCode, + "[Btu_Th]/[kg]"^^qudt:ucumCode; + skos:prefLabel "British Thermal Unit (thermochemical definition) per Kilogram"@en . + +# Additional Unitless units + + a skos:Concept ; + skos:definition "Kilocalories per kilowatt-hour. Used for efficiencies, such as energy in divided by energy produced."^^xsd:string ; + qudt:applicableSystem sou:CGS ; + qudt:applicableSystem sou:SI ; + qudt:hasDimensionVector ; + skos:broader ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "kcal/kW.h"^^qudt:symbol ; + skos:prefLabel "Kilocalories per kilowatt-hour"@en . + +# Matches to ecoinvent glossary + + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . diff --git a/pyst_client/units/data/qudt-patches.ttl b/pyst_client/units/data/qudt-patches.ttl new file mode 100644 index 0000000..091aa77 --- /dev/null +++ b/pyst_client/units/data/qudt-patches.ttl @@ -0,0 +1,6 @@ +@prefix quantitykind: . +@prefix qudt: . +@prefix unit: . + +unit:PA qudt:hasQuantityKind quantitykind:Pressure . +unit:W-PER-M2 qudt:hasQuantityKind quantitykind:Irradiance . diff --git a/pyst_client/units/data/selected-quantity-kinds.json b/pyst_client/units/data/selected-quantity-kinds.json new file mode 100644 index 0000000..ecd46a9 --- /dev/null +++ b/pyst_client/units/data/selected-quantity-kinds.json @@ -0,0 +1,65 @@ +{ + "http://qudt.org/vocab/quantitykind/Acceleration": "M-PER-SEC2", + "http://qudt.org/vocab/quantitykind/Acidity": "PH", + "http://qudt.org/vocab/quantitykind/Activity": "BQ", + "http://qudt.org/vocab/quantitykind/AmountOfSubstance": "MOL", + "http://qudt.org/vocab/quantitykind/Angle": "RAD", + "http://qudt.org/vocab/quantitykind/AngularVelocity": "RAD-PER-SEC", + "http://qudt.org/vocab/quantitykind/Area": "M2", + "http://qudt.org/vocab/quantitykind/AreaPerLength": "M2-PER-M", + "http://qudt.org/vocab/quantitykind/AreaPerTime": "M2-PER-SEC", + "http://qudt.org/vocab/quantitykind/Concentration": "MOL-PER-M3", + "http://qudt.org/vocab/quantitykind/Conductivity": "S-PER-M", + "http://qudt.org/vocab/quantitykind/Count": "NUM", + "http://qudt.org/vocab/quantitykind/Density": "KiloGM-PER-M3", + "http://qudt.org/vocab/quantitykind/DimensionlessRatio": "UNITLESS", + "http://qudt.org/vocab/quantitykind/Efficiency": "FRACTION", + "http://qudt.org/vocab/quantitykind/ElectricCharge": "C", + "http://qudt.org/vocab/quantitykind/ElectricCurrent": "A", + "http://qudt.org/vocab/quantitykind/Energy": "J", + "http://qudt.org/vocab/quantitykind/EnergyDensity": "J-PER-M3", + "http://qudt.org/vocab/quantitykind/Enthalpy": "J", + "http://qudt.org/vocab/quantitykind/Entropy": "J-PER-K", + "http://qudt.org/vocab/quantitykind/EquivalentDensity": "KiloGM-PER-M3", + "http://qudt.org/vocab/quantitykind/Flux": "PER-M2-SEC", + "http://qudt.org/vocab/quantitykind/Force": "N", + "http://qudt.org/vocab/quantitykind/Frequency": "PER-SEC", + "http://qudt.org/vocab/quantitykind/Heat": "J", + "http://qudt.org/vocab/quantitykind/InverseLength": "PER-M", + "http://qudt.org/vocab/quantitykind/InverseMass": "PER-KiloGM", + "http://qudt.org/vocab/quantitykind/Irradiance": "W-PER-M2", + "http://qudt.org/vocab/quantitykind/Length": "M", + "http://qudt.org/vocab/quantitykind/LengthMass": "M-KiloGM", + "http://qudt.org/vocab/quantitykind/LinearForce": "N-PER-M", + "http://qudt.org/vocab/quantitykind/LogOctanolWaterPartitionCoefficient": "UNITLESS", + "http://qudt.org/vocab/quantitykind/MagneticField": "T", + "http://qudt.org/vocab/quantitykind/Mass": "KiloGM", + "http://qudt.org/vocab/quantitykind/MassConcentration": "KiloGM-PER-M3", + "http://qudt.org/vocab/quantitykind/MassPerEnergy": "KiloGM-PER-J", + "http://qudt.org/vocab/quantitykind/MassPerLength": "KiloGM-PER-M", + "http://qudt.org/vocab/quantitykind/MassPerTime": "KiloGM-PER-SEC", + "http://qudt.org/vocab/quantitykind/MassRatio": "KiloGM-PER-KiloGM", + "http://qudt.org/vocab/quantitykind/MolarMass": "KiloGM-PER-MOL", + "http://qudt.org/vocab/quantitykind/MomentOfInertia": "KiloGM-M2", + "http://qudt.org/vocab/quantitykind/Momentum": "N-SEC", + "http://qudt.org/vocab/quantitykind/NumberDensity": "NUM-PER-M3", + "http://qudt.org/vocab/quantitykind/Population": "NUM", + "http://qudt.org/vocab/quantitykind/Power": "W", + "http://qudt.org/vocab/quantitykind/Pressure": "PA", + "http://qudt.org/vocab/quantitykind/Ratio": "ONE-PER-ONE", + "http://qudt.org/vocab/quantitykind/Resistance": "OHM", + "http://qudt.org/vocab/quantitykind/SoundIntensity": "W-PER-M2", + "http://qudt.org/vocab/quantitykind/SpecificEnergy": "J-PER-KiloGM", + "http://qudt.org/vocab/quantitykind/StoichiometricNumber": "NUM", + "http://qudt.org/vocab/quantitykind/SurfaceDensity": "KiloGM-PER-M2", + "http://qudt.org/vocab/quantitykind/Temperature": "K", + "http://qudt.org/vocab/quantitykind/TemperatureGradient": "K-PER-M", + "http://qudt.org/vocab/quantitykind/TemperatureRatio": "K-PER-K", + "http://qudt.org/vocab/quantitykind/Time": "SEC", + "http://qudt.org/vocab/quantitykind/Torque": "N-M", + "http://qudt.org/vocab/quantitykind/Velocity": "M-PER-SEC", + "http://qudt.org/vocab/quantitykind/Voltage": "V", + "http://qudt.org/vocab/quantitykind/Volume": "M3", + "http://qudt.org/vocab/quantitykind/VolumeFlowRate": "M3-PER-SEC", + "http://qudt.org/vocab/quantitykind/VolumePerArea": "M3-PER-M2" +} diff --git a/pyst_client/units/data/simapro.ttl b/pyst_client/units/data/simapro.ttl new file mode 100644 index 0000000..e17e4f5 --- /dev/null +++ b/pyst_client/units/data/simapro.ttl @@ -0,0 +1,296 @@ +@prefix qudt: . +@prefix dcterms: . +@prefix rdf: . +@prefix rdfs: . +@prefix skos: . +@prefix xsd: . +@prefix sou: . +@prefix owl: . + + a skos:ConceptScheme ; + dcterms:contributor "PRĂ©", + "Chris Mutel"; + dcterms:created "2024-08-12"^^xsd:date ; + dcterms:creator "Chris Mutel" ; + dcterms:description "An unofficial set of units from SimaPro"^^rdf:HTML ; + dcterms:rights "Creative Commons Attribution 4.0 International License (CC BY 4.0), available at https://creativecommons.org/licenses/by/4.0/. Attribution should be made to Sentier.dev" ; + dcterms:subject "SimaPro" ; + skos:prefLabel "SimaPro Unofficial and Incomplete Unit Schema - Version 2024.08.12"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "Bq"^^qudt:symbol ; + skos:prefLabel "Becquerel"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "GJ"^^qudt:symbol ; + skos:prefLabel "Gigajoule"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "MJ"^^qudt:symbol ; + skos:prefLabel "Megajoule"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "MWh"^^qudt:symbol ; + skos:prefLabel "Megawatt-hour"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "Wh"^^qudt:symbol ; + skos:prefLabel "Watt-hour"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "cm2"^^qudt:symbol ; + skos:prefLabel "Square centimetre"@en-GB, + "Square centimeter"@en-US ; +. + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "day"^^qudt:symbol ; + skos:prefLabel "Day"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "dm3"^^qudt:symbol ; + skos:prefLabel "Cubic decimetre"@en-GB , + "Cubic decimeter"@en-US ; +. + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "g"^^qudt:symbol ; + skos:prefLabel "Gram"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "ha"^^qudt:symbol ; + skos:prefLabel "Hectare"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "hr"^^qudt:symbol ; + skos:prefLabel "Hour"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "kJ"^^qudt:symbol ; + skos:prefLabel "Kilojoule"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "kg"^^qudt:symbol ; + skos:prefLabel "Kilogram"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "kBq"^^qudt:symbol ; + skos:prefLabel "Kilobecquerel"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "km"^^qudt:symbol ; + skos:prefLabel "Kilometre"@en-GB, + "Kilometer"@en-US ; +. + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "m"^^qudt:symbol ; + skos:prefLabel "Metre"@en-GB, + "Meter"@en-US ; +. + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "m2"^^qudt:symbol ; + skos:prefLabel "Square metre"@en-GB, + "Square meter"@en-US ; +. + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "l"^^qudt:symbol ; + skos:prefLabel "Litre"@en-GB, + "Liter"@en-US ; +. + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "ton"^^qudt:symbol ; + skos:prefLabel "Tonne"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "t"^^qudt:symbol ; + skos:prefLabel "Ton"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "tkm"^^qudt:symbol ; + skos:prefLabel "Tonne (metric) kilometre"@en-GB, + "Tonne (metric) kilometer"@en-US . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "kgkm"^^qudt:symbol ; + skos:prefLabel "Kilogram kilometre"@en-GB, + "Kilogram kilometer"@en-US . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "km"^^qudt:symbol ; + skos:prefLabel "Kilometre"@en-GB, + "Kilometer"@en-US . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "m3"^^qudt:symbol ; + skos:prefLabel "Cubic metre"@en-GB, + "Cubic meter"@en-US . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "kW*h"^^qudt:symbol ; + owl:deprecated true ; + dcterms:replacedBy ; + skos:prefLabel "Kilowatt hour (obsolete form)"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "kWh"^^qudt:symbol ; + skos:prefLabel "Kilowatt hour"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "kg*day"^^qudt:symbol ; + skos:prefLabel "Kilogram day"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "personkm"^^qudt:symbol ; + skos:prefLabel "Person kilometer"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "l*day"^^qudt:symbol ; + skos:prefLabel "Litre day"@en-GB, + "Liter day"@en-US . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "m2*y"^^qudt:symbol ; + skos:prefLabel "Square metre year"@en-GB, + "Square meter year"@en-US . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + owl:deprecated true ; + dcterms:replacedBy ; + skos:notation "m2a"^^qudt:symbol ; + skos:prefLabel "Square metre year (obsolete form)"@en-GB, + "Square meter year (obsolete form)"@en-US . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "m3y"^^qudt:symbol ; + skos:prefLabel "Cubic metre year"@en-GB, + "Cubic meter year"@en-US . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "min"^^qudt:symbol ; + skos:prefLabel "Minute"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "my"^^qudt:symbol ; + skos:prefLabel "Metre year"@en-GB, + "Meter year"@en-US ; +. + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "n"^^qudt:symbol ; + skos:prefLabel "Number"@en . + + a skos:Concept ; + skos:exactMatch ; + skos:inScheme ; + skos:notation "p"^^qudt:symbol ; + skos:prefLabel "Piece"@en . + + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . + skos:exactMatch . diff --git a/pyst_client/units/errors.py b/pyst_client/units/errors.py new file mode 100644 index 0000000..1b42d27 --- /dev/null +++ b/pyst_client/units/errors.py @@ -0,0 +1,19 @@ +class GraphFilterError(Exception): + """Filter on graph produced undesired result""" + + pass + + +class MissingDimensionVector(Exception): + """Unit is missing `hasDimensionVector` attribute""" + + pass + + +class QUDTLoaderHTTPError(Exception): + """HTTP error occurred during QUDTLoader request""" + + def __init__(self, message: str, status_code: int, response_text: str = ""): + self.status_code = status_code + self.response_text = response_text + super().__init__(message) diff --git a/pyst_client/units/json_export.py b/pyst_client/units/json_export.py new file mode 100644 index 0000000..a896f8b --- /dev/null +++ b/pyst_client/units/json_export.py @@ -0,0 +1,52 @@ +import orjson +from bs4 import BeautifulSoup + +from pyst_client.units.rdf import QUDT, QUDTS, RDF, SKOS, URIRef + +q = QUDT() + +qk_data = {} +qk = {s for s, p, o in q.graph.triples((None, SKOS.topConceptOf, None))} + +for qk_uri in qk: + qk_data[qk_uri] = {"iri": qk_uri} + for s, p, o in q.graph.triples((qk_uri, None, None)): + if p == SKOS.prefLabel and (not o.language or o.language == q.default_lang): + qk_data[qk_uri]["label"] = str(o) + elif p == SKOS.definition: + qk_data[qk_uri]["definition"] = ( + BeautifulSoup(str(o), "html.parser").get_text().strip() + ) + elif p == QUDTS.hasDimensionVector: + qk_data[qk_uri]["dimension_vector"] = str(o) + elif p == SKOS.note: + qk_data[qk_uri]["note"] = str(o) + + +units_data = {} +units = {s for s, p, o in q.graph.triples((None, RDF.type, SKOS.Concept))} + +for unit_uri in units: + units_data[unit_uri] = {"iri": unit_uri} + for s, p, o in q.graph.triples((unit_uri, None, None)): + if p == SKOS.prefLabel and (not o.language or o.language == q.default_lang): + units_data[unit_uri]["label"] = str(o) + elif p == SKOS.notation: + units_data[unit_uri]["notation"] = str(o) + elif p == QUDTS.hasQuantityKind: + units_data[unit_uri]["quantity_kind_iri"] = str(o) + elif p == SKOS.broader and o in units: + units_data[unit_uri]["reference_unit_iri"] = str(o) + elif p == SKOS.definition: + units_data[unit_uri]["definition"] = ( + BeautifulSoup(str(o), "html.parser").get_text().strip() + ) + elif p == QUDTS.conversionMultiplier: + units_data[unit_uri]["conversion_multiplier"] = float(o) + + +with open("quantity-kinds.json", "wb") as f: + f.write(orjson.dumps(list(qk_data.values()), option=orjson.OPT_INDENT_2)) + +with open("units.json", "wb") as f: + f.write(orjson.dumps(list(units_data.values()), option=orjson.OPT_INDENT_2)) diff --git a/pyst_client/units/loader.py b/pyst_client/units/loader.py new file mode 100644 index 0000000..6020fb4 --- /dev/null +++ b/pyst_client/units/loader.py @@ -0,0 +1,132 @@ +import asyncio +from itertools import repeat +from urllib.parse import quote_plus, urljoin +from pprint import pprint + +import httpx +import structlog +from tqdm import tqdm + +from pyst_client.units.errors import QUDTLoaderHTTPError +from pyst_client.units.rdf import QUDT, HEALTHY_RELATIONSHIPS +from pyst_client.units.utils import async_request + + +logger = structlog.get_logger("sentier_vocab") +transport = httpx.AsyncHTTPTransport(retries=5) + + +class QUDTLoader: + def __init__(self, api_key: str, host: str = "http://localhost:8000", ignore_422_errors: bool = False): + self.api_key = api_key + self.host = host + self.ignore_422_errors = ignore_422_errors + + logger.info("Loading RDF graph") + self.qudt = QUDT() + + def write(self) -> None: + data = self.qudt.expanded_json_ld_graph(self.qudt.concept_scheme())[0] + iri = orjson.loads(data)["@id"] + logger.info("Adding concept scheme") + asyncio.run(self._request(data=data, url_component="/api/v1/concept_schemes/", url_iri=iri)) + + logger.info("Adding concepts") + data = self.qudt.expanded_json_ld_graph(self.qudt.concepts()) + iris = [orjson.loads(obj)["@id"] for obj in data] + for ds, iri in tqdm(list(zip(data, iris))): + asyncio.run( + self._request(data=ds, url_component="/api/v1/concepts/", url_iri=iri) + ) + + for relationship in HEALTHY_RELATIONSHIPS: + logger.info(f"Adding {relationship} relationships") + data = self.qudt.expanded_separate_json_ld_graph( + relationship, + self.qudt.relationships(kind=relationship), + ) + for elem in tqdm(data): + asyncio.run(async_request(data=elem, url_component="/api/v1/relationships/"), host=self.host, api_key=self.api_key, ignore_422_errors=self.ignore_422_errors) + + # correspondence_uris = self.qudt.correspondences() + + # logger.info("Adding `Correspondence`") + # for uri in correspondence_uris: + # data = self.qudt.expanded_json_ld_graph( + # self.qudt.correspondence(uri=uri, sample=self.sample) + # )[0] + # iri = orjson.loads(data)["@id"] + # asyncio.run(self._request(data=data, url_component="/api/v1/correspondences/", url_iri=iri)) + + # data = [ + # self.qudt.expanded_json_ld_graph(obj)[0] + # for correspondence in correspondence_uris + # for obj in self.qudt.associations(correspondence, sample=self.sample).values() + # ] + # increment = 50 + # logger.info("Adding xkos:ConceptAssociations") + # for index in tqdm(range(0, len(data), increment)): + # iris = [orjson.loads(obj)["@id"] for obj in data[index : index + increment]] + # asyncio.run( + # self._chunked_request( + # data=data[index : index + increment], url_component="/api/v1/associations/", url_iris=iris + # ) + # ) + + # logger.info("Updating `Correspondence:made_of`") + # for uri in correspondence_uris: + # data = self.qudt.expanded_json_ld_graph(self.qudt.made_of(uri=uri, sample=self.sample))[0] + # asyncio.run(self._request(data=data, url_component="/api/v1/made_ofs/")) + + async def _chunked_request( + self, url_component: str, data: list[bytes], url_iris: list[str] | None = None + ) -> list[httpx.Response]: + if url_iris is None: + url_iris = repeat("") + + async with httpx.AsyncClient(transport=transport) as client: + tasks = [] + for chunk, iri in zip(data, url_iris): + tasks.append( + asyncio.create_task( + client.post( + urljoin(self.host, url_component + quote_plus(iri)), + headers={ + "X-PyST-Auth-Token": self.api_key, + "Content-Type": "application/json", + }, + content=chunk, + timeout=120.0, + ) + ) + ) + responses = await asyncio.gather(*tasks) + + # Check for HTTP errors in responses, but don't raise on 409 Conflict (duplicate resource) + # Optionally ignore 422 Unprocessable Entity based on flag + ignored_codes = {409} + if self.ignore_422_errors: + ignored_codes.add(422) + + for i, response in enumerate(responses): + if response.status_code >= 400 and response.status_code not in ignored_codes: + try: + response_text = response.text + except Exception: + response_text = "Unable to decode response text" + + iri = list(url_iris)[i] if i < len(list(url_iris)) else "unknown" + error_message = ( + f"HTTP request failed with status {response.status_code}" + ) + if iri: + error_message += f" for resource: {iri}" + + pprint(response.json()) + raise QUDTLoaderHTTPError( + message=error_message, + status_code=response.status_code, + response_text=response_text, + ) + + return responses diff --git a/pyst_client/units/rdf.py b/pyst_client/units/rdf.py new file mode 100644 index 0000000..b9baa34 --- /dev/null +++ b/pyst_client/units/rdf.py @@ -0,0 +1,643 @@ +import json +from functools import lru_cache +from io import BytesIO +from pathlib import Path +from typing import Any, Generator +from zipfile import ZipFile + +import orjson +import requests +import skosify +import structlog +from bs4 import BeautifulSoup +from rdflib import Graph, Literal, Namespace, URIRef +from rdflib.namespace import DCTERMS, OWL, RDF, RDFS, SKOS + +from pyst_client.units.errors import GraphFilterError, MissingDimensionVector +from pyst_client.units.utils import ( + DEFAULT_DATA_DIR, + get_one_in_graph, + streaming_download, + to_untyped_literal, +) + +VAEM = Namespace("http://www.linkedmodel.org/schema/vaem") +# TODO: Get version through file inspection +QUDTS = Namespace("http://qudt.org/schema/qudt/") +QUDTV = Namespace("http://qudt.org/vocab/") +QK = QUDTV.quantitykind + +CS_MAPPING = { + DCTERMS.description: SKOS.definition, +} + +logger = structlog.get_logger("sentier_vocab") + +RELATIONSHIPS = { + SKOS.broaderTransitive, + SKOS.narrowerTransitive, + SKOS.broader, + SKOS.narrower, + SKOS.exactMatch, + SKOS.closeMatch, + SKOS.broadMatch, + SKOS.narrowMatch, + SKOS.relatedMatch, +} +HEALTHY_RELATIONSHIPS = { + SKOS.broader, + SKOS.exactMatch, + SKOS.closeMatch, + SKOS.broadMatch, + SKOS.narrowMatch, + SKOS.relatedMatch, +} + +vocab_data_dir = Path(__file__).parent / "data" +selected_fp = vocab_data_dir / "selected-quantity-kinds.json" +extra_concepts_data = vocab_data_dir / "extra-data.ttl" +qudt_patches_data = vocab_data_dir / "qudt-patches.ttl" + + +def clean(s: Any) -> str: + return BeautifulSoup(str(s), "html.parser").get_text().strip() + + +class QUDT: + def __init__(self, data_dir: Path = DEFAULT_DATA_DIR, default_lang: str = "en"): + self.default_lang = default_lang + self.selected_qk = { + URIRef(k): v for k, v in json.load(open(selected_fp)).items() + } + self.zipped = ZipFile(open(self.get_latest_version(data_dir), "rb")) + self.graph = Graph() + # self.zipfile_prefix = self.get_zipfile_prefix() + + self.cs_uri = URIRef("https://vocab.sentier.dev/units/") + concept_scheme = self.add_concept_scheme() + + mapping = self.add_quantity_kinds(concept_scheme) + self.qk_uris = list(mapping.values()) + self.add_units(concept_scheme, mapping) + + # self.graph.parse(extra_concepts_data) + # self.fill_missing_attributes() + # self.skosify_checks() + + def add(self, triple: tuple) -> None: + # Convenient place to put logging or debug checks + self.graph.add(triple) + + def get_latest_version(self, data_dir: Path) -> Path: + try: + catalogue = json.load(open(data_dir / "qudt.json")) + except (OSError,): + catalogue = {} + release = requests.get( + "https://api.github.com/repos/qudt/qudt-public-repo/releases/latest" + ).json()["assets"][0]["browser_download_url"] + if catalogue.get("release") != release: + fp = str(streaming_download(release)) + with open(data_dir / "qudt.json", "w") as f: + json.dump({"release": release, "filepath": fp}, f, indent=2) + return fp + return catalogue["filepath"] + + def get_graph_for_file(self, path: str) -> Graph: + for zipinfo in self.zipped.infolist(): + # if zipinfo.filename.startswith(self.zipfile_prefix + path): + if zipinfo.filename == path: + return Graph().parse(self.zipped.open(zipinfo.filename)) + raise KeyError + + def write_graph(self, filepath: Path = Path.cwd() / "qudt-sentier-dev.ttl") -> Path: + self.graph.serialize(destination=filepath) + return filepath + + def skosify_checks(self): + # Can't use - create backwards related links to nodes not defined in our graph + # skosify.infer.skos_related(self.graph) + skosify.infer.skos_topConcept(self.graph) + skosify.infer.skos_hierarchical(self.graph, narrower=False) + # skosify.infer.skos_transitive(self.graph, narrower=True) + # skosify.infer.rdfs_classes(self.graph) + # skosify.infer.rdfs_properties(self.graph) + + def concept_scheme(self, as_bytes: bool = True) -> Graph: + graph = Graph() + + for subj, verb, obj in self.graph.triples((self.cs_uri, None, None)): + graph.add((subj, verb, obj)) + + return graph + + def relationships(self, kind: URIRef) -> Graph: + graph = Graph() + concept_uris = self.concept_uris.union(set(self.qk_uris)) + + for subj, verb, obj in self.graph.triples((None, kind, None)): + if subj in concept_uris: + graph.add((subj, verb, obj)) + + return graph + + def concepts(self, sample: bool = False) -> Graph: + graph = Graph() + + concept_uris = self.concept_uris.union(set(self.qk_uris)) + + for subj, verb, obj in self.graph.triples((None, None, None)): + if subj not in concept_uris: + continue + # Will be added later + if verb in RELATIONSHIPS: + continue + else: + graph.add((subj, verb, obj)) + + # Remove alt labels if they are copies of pref labels + for concept in concept_uris: + pref_labels = { + concept: o for s, v, o in graph.triples((concept, SKOS.prefLabel, None)) + } + for s, v, o in graph.triples((concept, SKOS.altLabel, None)): + if o == pref_labels[s]: + graph.remove((s, v, o)) + + # Remove notation if they are copies of pref labels + for concept in concept_uris: + pref_labels = { + concept: str(o) for s, v, o in graph.triples((concept, SKOS.prefLabel, None)) + } + for s, v, o in graph.triples((concept, SKOS.notation, None)): + if str(o) == pref_labels[s]: + graph.remove((s, v, o)) + + # for s, v, o in graph.triples((URIRef("https://vocab.sentier.dev/units/unit/OHM"), SKOS.notation, None)): + # print(o) + + return graph + + def add_concept_scheme(self) -> URIRef: + schema_graph = self.get_graph_for_file("schema/SCHEMA_QUDT.ttl") + ontology, _, _ = get_one_in_graph( + schema_graph, ((None, RDF.type, OWL.Ontology)) + ) + _, _, graph_metdata_node = get_one_in_graph( + schema_graph, (ontology, VAEM["#hasGraphMetadata"], None) + ) + _, _, title = get_one_in_graph( + schema_graph, (graph_metdata_node, DCTERMS.title, None) + ) + version = str(title).split("Version")[-1].strip() + + DIRECT_COPIES = (DCTERMS.created,) + + self.add((self.cs_uri, RDF.type, SKOS.ConceptScheme)) + self.add( + ( + self.cs_uri, + SKOS.prefLabel, + self.as_language_aware_literal( + Literal(f"Units Concept Scheme based on QUDT version {version}") + ), + ) + ) + self.add( + ( + self.cs_uri, + DCTERMS.creator, + URIRef("https://www.linkedin.com/in/ralphhodgson/"), + ) + ) + self.add((self.cs_uri, OWL.versionInfo, Literal(version))) + + _, _, description = get_one_in_graph( + schema_graph, (graph_metdata_node, DCTERMS.description, None) + ) + description = clean(description) + self.add( + ( + self.cs_uri, + SKOS.definition, + self.as_language_aware_literal(Literal(description)), + ) + ) + + for s, p, o in schema_graph.triples((graph_metdata_node, None, None)): + if p in DIRECT_COPIES: + self.add((self.cs_uri, p, o)) + + self.add( + ( + self.cs_uri, + URIRef("http://purl.org/ontology/bibo/status"), + URIRef("http://purl.org/ontology/bibo/status/accepted"), + ) + ) + + return self.cs_uri + + def as_language_aware_literal( + self, obj: Literal, en_title: bool = False + ) -> Literal: + if not obj.language: + if en_title and self.default_lang.lower().startswith("en"): + return Literal(str(obj).title(), lang=self.default_lang) + else: + return Literal(str(obj), lang=self.default_lang) + else: + if en_title and obj.language.lower().startswith("en"): + return Literal(str(obj).title(), lang=obj.language) + else: + return obj + + def get_identifier(self, uri: URIRef) -> str: + return uri.split("/")[-1] + + def deprecated(self, graph: Graph, key: URIRef) -> bool: + return any(graph.triples((key, DCTERMS.isReplacedBy, None))) + + def check_that_deprecated_have_replaced_by(self, graph: Graph, kind: str) -> bool: + # Note that it doesn't work the other way... + replaced = { + s + for s, p, o in graph.triples((None, DCTERMS.isReplacedBy, None)) + if s.startswith(kind) + } + deprecated = { + s + for s, p, o in graph.triples((None, QUDTS.deprecated, None)) + if s.startswith(kind) + } + return deprecated.difference(replaced) + + def add_labels_handle_missing_language( + self, + graph: Graph, + search_uri: URIRef, + target_uri: URIRef, + search_term: URIRef = RDFS.label, + target_term: URIRef = SKOS.prefLabel, + ) -> None: + """Iterate over all `RDFS.label` triples for `uri`, and adds then as `SKOS.prefLabel` + + Handles labels without a language field by checking if the default language field is also + provided as a separate label.""" + has_default_language = any( + 1 + for s, p, o in graph.triples((search_uri, search_term, None)) + if o.language == self.default_lang + ) + for s, p, o in graph.triples((search_uri, search_term, None)): + if not o.language and has_default_language: + continue + elif not o.language: + self.add((target_uri, target_term, self.as_language_aware_literal(o))) + else: + self.add((target_uri, target_term, to_untyped_literal(o))) + + def add_quantity_kinds(self, cs: URIRef) -> dict[URIRef, URIRef]: + qk_graph = self.get_graph_for_file( + "vocab/quantitykinds/VOCAB_QUDT-QUANTITY-KINDS-ALL.ttl" + ) + # No longer true as of version 3.1.6 + # assert not self.check_that_deprecated_have_replaced_by(qk_graph, QK) + + qk_mapping = { + s: URIRef( + "https://vocab.sentier.dev/units/quantity-kind/" + + self.get_identifier(s) + ) + for s, p, o in qk_graph + if URIRef(s) in self.selected_qk + and s.startswith(QK) + and not any(qk_graph.triples((s, DCTERMS.isReplacedBy, None))) + and not any(qk_graph.triples((s, QUDTS.deprecated, None))) + } + + for key_uri, value_uri in qk_mapping.items(): + self.add((value_uri, RDF.type, SKOS.Concept)) + self.add((value_uri, SKOS.inScheme, cs)) + self.add((value_uri, SKOS.topConceptOf, cs)) + self.add((value_uri, SKOS.exactMatch, key_uri)) + try: + self.add( + ( + value_uri, + QUDTS.hasDimensionVector, + get_one_in_graph( + qk_graph, (key_uri, QUDTS.hasDimensionVector, None) + )[2], + ) + ) + except GraphFilterError: + logger.debug(f"No dimension vector given for quantity kind {value_uri}") + for s, v, o in qk_graph.triples((key_uri, SKOS.broader, None)): + if o in self.selected_qk: + self.add((qk_mapping[s], SKOS.broader, qk_mapping[o])) + + self.add_labels_handle_missing_language( + graph=qk_graph, + search_uri=key_uri, + target_uri=value_uri, + ) + self.add_labels_handle_missing_language( + graph=qk_graph, + search_uri=key_uri, + target_uri=value_uri, + search_term=DCTERMS.description, + target_term=SKOS.definition, + ) + self.add_labels_handle_missing_language( + graph=qk_graph, + search_uri=key_uri, + target_uri=value_uri, + search_term=RDFS.comment, + target_term=SKOS.note, + ) + + unmodified_verb_mapping = { + QUDTS.symbol: SKOS.notation, + QUDTS.dbpediaMatch: SKOS.related, + QUDTS.iec61360Code: SKOS.notation, + QUDTS.informativeReference: QUDTS.informativeReference, + QUDTS.isoNormativeReference: QUDTS.isoNormativeReference, + QUDTS.latexDefinition: QUDTS.latexDefinition, + QUDTS.latexSymbol: QUDTS.latexSymbol, + QUDTS.siExactMatch: SKOS.exactMatch, + + # QUDTS.plainTextDescription: SKOS.note, + + RDFS.seeAlso: SKOS.related, + } + + for s, v, o in qk_graph.triples((key_uri, None, None)): + try: + self.add((value_uri, unmodified_verb_mapping[v], o)) + except KeyError: + pass + + self.add( + ( + value_uri, + URIRef("http://purl.org/ontology/bibo/status"), + URIRef("http://purl.org/ontology/bibo/status/accepted"), + ) + ) + + return qk_mapping + + def check_all_units_have_vector(self, graph: Graph) -> None: + all_units = { + s + for s, p, o in graph.triples((None, None, None)) + if s.startswith(QUDTV.unit) + } + with_dimension_vector = { + s + for s, p, o in graph.triples((None, QUDTS.hasDimensionVector, None)) + if s.startswith(QUDTV.unit) + } + if all_units.difference(with_dimension_vector): + raise MissingDimensionVector + + @lru_cache(maxsize=1024) + def is_unitary(self, graph: Graph, uri: URIRef) -> bool: + try: + return ( + float( + get_one_in_graph(graph, ((uri, QUDTS.conversionMultiplier, None)))[ + 2 + ] + ) + == 1.0 + ) + except GraphFilterError: + logger.trace("No conversion multiplier for {u}", u=uri) + return False + + # def fill_missing_attributes(self) -> None: + # """Our custom concepts can be narrower than an existing QUDT unit. In these cases, we don't + # copy over all the additional data from the "parent" concept, but add it automatically. + # """ + # all_units = { + # s + # for s, _, _ in self.graph.triples((None, RDF.type, SKOS.Concept)) + # if s.startswith("https://vocab.sentier.dev/units/unit") + # } + # qk_mapping = { + # s: o + # for s, _, o in self.graph.triples((None, QUDTS.hasQuantityKind, None)) + # if s in all_units + # } + # for uri in all_units.difference(set(qk_mapping)): + # possibles = [ + # o + # for s, v, o in self.graph.triples((uri, SKOS.broader, None)) + # if o.startswith("https://vocab.sentier.dev/units/unit") + # ] + # if not len(possibles) == 1: + # raise ValueError(f"Can't find broader match for concept {uri}") + # self.add((uri, QUDTS.hasQuantityKind, qk_mapping[possibles[0]])) + + def our_concept_uri(self, uri: URIRef) -> URIRef: + return URIRef( + "https://vocab.sentier.dev/units/unit" + str(uri).replace(QUDTV.unit, "") + ) + + def all_concept_uris(self, graph: Graph, only_these_qks: set) -> Generator: + for s, p, o in graph.triples((None, QUDTS.hasQuantityKind, None)): + if ( + o in self.selected_qk + and not any(graph.triples((s, QUDTS.deprecated, None))) + and any(graph.triples((s, QUDTS.hasDimensionVector, None))) + ): + yield s + + def add_units(self, cs: URIRef, qk_mapping: dict[URIRef, URIRef]) -> None: + unit_graph = self.get_graph_for_file("vocab/unit/VOCAB_QUDT-UNITS-ALL.ttl") + for triple in Graph().parse(qudt_patches_data): + unit_graph.add(triple) + # Not true as of 3.1.6 + # self.check_all_units_have_vector(unit_graph) + + unit_mapping = { + s: self.our_concept_uri(s) + for s in self.all_concept_uris(unit_graph, set(qk_mapping)) + } + + top_level = { + key: vsd_uri + for key, value in self.selected_qk.items() + for qudt_uri, vsd_uri in unit_mapping.items() + if self.get_identifier(qudt_uri) == value + } + + for key_uri, value_uri in unit_mapping.items(): + self.add_unit(uri=value_uri, unit_graph=unit_graph, cs=cs, qudt_uri=key_uri) + + for _, _, quantity_kind in unit_graph.triples( + (key_uri, QUDTS.hasQuantityKind, None) + ): + if quantity_kind not in top_level: + continue + if value_uri in top_level.values(): + self.add((value_uri, SKOS.broader, qk_mapping[quantity_kind])) + self.add( + (value_uri, QUDTS.hasQuantityKind, qk_mapping[quantity_kind]) + ) + else: + self.add((value_uri, SKOS.broader, top_level[quantity_kind])) + self.add( + (value_uri, QUDTS.hasQuantityKind, qk_mapping[quantity_kind]) + ) + self.concept_uris = set(unit_mapping.values()) + + def add_unit( + self, uri: URIRef, unit_graph: Graph, cs: URIRef, qudt_uri: URIRef + ) -> None: + self.add((uri, RDF.type, SKOS.Concept)) + self.add((uri, SKOS.inScheme, cs)) + self.add((uri, SKOS.exactMatch, qudt_uri)) + try: + self.add( + ( + uri, + QUDTS.hasDimensionVector, + get_one_in_graph( + unit_graph, (qudt_uri, QUDTS.hasDimensionVector, None) + )[2], + ) + ) + except GraphFilterError: + logger.debug(f"No dimension vector given for unit {uri}") + + for s, v, o in unit_graph.triples((qudt_uri, RDFS.label, None)): + self.add((uri, SKOS.prefLabel, self.as_language_aware_literal(o))) + + self.add_labels_handle_missing_language( + graph=unit_graph, + search_uri=qudt_uri, + target_uri=uri, + search_term=DCTERMS.description, + target_term=SKOS.definition, + ) + + verb_mapping = { + QUDTS.plainTextDescription: SKOS.note, + QUDTS.conversionMultiplier: QUDTS.conversionMultiplier, + QUDTS.conversionMultiplierSN: QUDTS.conversionMultiplierSN, + QUDTS.symbol: SKOS.notation, + QUDTS.dbpediaMatch: SKOS.related, + QUDTS.iec61360Code: SKOS.notation, + QUDTS.uneceCommonCode: SKOS.notation, + QUDTS.ucumCode: SKOS.notation, + QUDTS.uneceCommonCode: SKOS.notation, + QUDTS.informativeReference: QUDTS.informativeReference, + QUDTS.isoNormativeReference: QUDTS.isoNormativeReference, + QUDTS.latexDefinition: QUDTS.latexDefinition, + QUDTS.latexSymbol: QUDTS.latexSymbol, + QUDTS.siExactMatch: SKOS.exactMatch, + RDFS.comment: SKOS.note, + QUDTS.plainTextDescription: SKOS.note, + RDFS.seeAlso: SKOS.related, + QUDTS.applicableSystem: QUDTS.applicableSystem, + } + own_type = { + QUDTS.symbol, + QUDTS.iec61360Code, + QUDTS.uneceCommonCode, + QUDTS.ucumCode, + QUDTS.uneceCommonCode, + } + + for s, v, o in unit_graph.triples((qudt_uri, None, None)): + try: + verb = verb_mapping[v] + if v in own_type: + self.add((uri, verb, Literal(o, datatype=v))) + else: + self.add((uri, verb, o)) + except KeyError: + pass + + self.add( + ( + uri, + URIRef("http://purl.org/ontology/bibo/status"), + URIRef("http://purl.org/ontology/bibo/status/accepted"), + ) + ) + + def expanded_separate_json_ld_graph(self, kind: URIRef, graph: Graph) -> bytes: + """Take {a related (b, c)} and turn into {a related b}, {a related c}""" + out = BytesIO() + graph.serialize(out, format="json-ld", encoding="utf-8") + out.seek(0) + orig = orjson.loads(out.read()) + data = [] + for obj in orig: + for child in obj[str(kind)]: + data.append(orjson.dumps([{"@id": obj["@id"], str(kind): [child]}])) + return data + + def expanded_json_ld_graph( + self, graph: Graph, single_elements: bool = True + ) -> bytes: + out = BytesIO() + graph.serialize(out, format="json-ld", encoding="utf-8") + out.seek(0) + if single_elements: + # Transform from bytes with list to list of bytes (say that twice :) + return [orjson.dumps(obj) for obj in orjson.loads(out.read())] + else: + return out.read() + + +# def add_quantity_kinds_to_graph( +# input_ttl: Path, +# qudt_ttl: Path, +# ) -> Path: +# """ +# The `input_ttl` concept scheme was written by hand (!), but we can make it more useful by +# positioning each input concept in the QUDT quantity kind hierarchy. +# """ +# output_ttl = ( +# Path(__file__).parent +# / "output" +# / Path(str(input_ttl.stem) + ".supplemented" + str(input_ttl.suffix)) +# ) + +# input_graph = Graph().parse(input_ttl) +# qudt = Graph().parse(qudt_ttl) + +# qudt_qk_mapping = { +# s: o +# for s, v, o in qudt.triples((None, QUDTS.hasQuantityKind, None)) +# if o.startswith("https://vocab.sentier.dev/units/quantity-kind/") +# and s.startswith("https://vocab.sentier.dev/units/unit/") +# } +# qudt_d_mapping = { +# s: o +# for s, v, o in qudt.triples((None, QUDTS.hasDimensionVector, None)) +# if o.startswith("http://qudt.org/vocab/dimensionvector/") +# and s.startswith("https://vocab.sentier.dev/units/unit/") +# } + +# for s, v, o in input_graph.triples((None, SKOS.exactMatch, None)): +# if o.startswith("https://vocab.sentier.dev/units/unit/"): +# input_graph.add((s, QUDTS.hasQuantityKind, qudt_qk_mapping[o])) +# input_graph.add((s, QUDTS.hasDimensionVector, qudt_d_mapping[o])) + +# logger.info(f"Writing {output_ttl}") +# input_graph.serialize(destination=output_ttl) +# return output_ttl + + +# if __name__ == "__main__": +# QUDT().write_graph() +# add_quantity_kinds_to_graph( +# Path(__file__).parent / "input" / "simapro.ttl", +# Path(__file__).parent / "output" / "qudt-sentier-dev.ttl", +# ) diff --git a/pyst_client/units/utils.py b/pyst_client/units/utils.py new file mode 100644 index 0000000..af619c5 --- /dev/null +++ b/pyst_client/units/utils.py @@ -0,0 +1,271 @@ +import json +import re +from pathlib import Path +from typing import TextIO +from zipfile import ZipFile +from urllib.parse import quote_plus, urljoin +from pprint import pprint + +import httpx +import requests +import structlog +from platformdirs import user_data_dir +from rdflib import Graph, Literal + +from pyst_client.units.errors import GraphFilterError, QUDTLoaderHTTPError + +logger = structlog.get_logger("sentier_vocab") +transport = httpx.AsyncHTTPTransport(retries=5) + +DEFAULT_DATA_DIR = Path(user_data_dir("sentier.dev", "dds")) +DEFAULT_DATA_DIR.mkdir(parents=True, exist_ok=True) + + +def get_filename(response: requests.Response, url: str) -> str: + """ + Get filename from response headers or URL. + """ + if "Content-Disposition" in response.headers.keys(): + filename = re.findall("filename=(.+)", response.headers["Content-Disposition"])[ + 0 + ] + else: + filename = url.split("/")[-1] + if filename[0] in "'\"": + filename = filename[1:] + if filename[-1] in "'\"": + filename = filename[:-1] + if not filename: + raise ValueError("Can't determine suitable filename") + return filename + + +def streaming_download( + url: str, + filename: str | None = None, + dirpath: Path | None = None, + chunk_size: int = 4096 * 8, +) -> Path: + """ + Download file from URL. + + Parameters + ---------- + url : str + URL to download from. + filename : str, optional + Filename to save to. If not given, will be determined from URL. + dirpath : Path, optional + Directory to save to. If not given, will be current working directory. + chunk_size : int, optional + Chunk size to use when downloading. + + Returns + ------- + pathlib.Path + Path to downloaded file. + """ + response = requests.get(url, stream=True) + if response.status_code != 200: + raise ValueError(f"URL {url} returns status code {response.status_code}") + + total_length = response.headers.get("content-length") + filename = filename or get_filename(response, url) + dirpath = Path(dirpath) if dirpath else Path(DEFAULT_DATA_DIR) + dirpath.mkdir(parents=True, exist_ok=True) + filepath = dirpath / filename + + with open(filepath, "wb") as f: + logger.info(f"Downloading {filename} to {filepath}") + if not total_length: + f.write(response.content) + else: + total_length = int(total_length) + for data in response.iter_content(chunk_size=chunk_size): + f.write(data) + + return filepath + + +def get_one_in_graph(graph: Graph, criteria: tuple) -> tuple: + candidates = list(graph.triples(criteria)) + if len(candidates) == 1: + return candidates[0] + else: + ERROR = f""" +Given criteria produced {len(candidates)} results; needed exactly 1. +Criteria: {criteria}""" + if candidates: + ERROR += "\n\t" + "\n\t".join(str(line) for line in candidates) + raise GraphFilterError(ERROR) + + +def get_latest_github_file_from_release( + repo_url: str, filepath: str, data_dir: Path = DEFAULT_DATA_DIR +) -> TextIO: + return GithubZipfileRelease( + repo_url=repo_url, data_dir=data_dir + ).get_file_in_archive(filepath) + + +class GithubZipfileRelease: + def __init__(self, repo_url: str, data_dir: Path = DEFAULT_DATA_DIR) -> None: + if repo_url.endswith("/"): + repo_url = repo_url[:-1] + self.zipball_url = self.get_zipball_url(repo_url) + self.catalogue_filepath = data_dir / f"{repo_url.split("/")[-1]}.json" + self.zip_archive = ZipFile( + open( + self.get_latest_version( + data_dir=data_dir, + catalogue_filepath=self.catalogue_filepath, + zipball_url=self.zipball_url, + ), + "rb", + ) + ) + self.zipfile_prefix = self.get_zipfile_prefix() + + def get_zipball_url(self, repo_url: str) -> str: + if not repo_url.startswith("https://github.com/"): + raise ValueError( + "`repo_url` must be a Github repository and start with 'https://github.com/'" + ) + if repo_url.count("/") != 4: + raise ValueError( + "`repo_url` must have form 'https://github.com//' with four '/' characters" + ) + return requests.get( + f"https://api.github.com/repos/{repo_url.replace("https://github.com/", "")}/releases/latest" + ).json()["zipball_url"] + + def get_latest_version( + self, data_dir: Path, catalogue_filepath: Path, zipball_url: str + ) -> Path: + try: + catalogue = json.load(open(catalogue_filepath)) + except (OSError,): + catalogue = {} + if catalogue.get("release") != zipball_url: + fp = streaming_download(zipball_url, dirpath=data_dir) + with open(catalogue_filepath, "w") as f: + json.dump({"release": zipball_url, "filepath": str(fp)}, f, indent=2) + return fp + return catalogue["filepath"] + + def get_zipfile_prefix(self) -> str: + prefix = set() + + for zipinfo in self.zip_archive.infolist(): + prefix.add(zipinfo.filename.split("/")[0]) + + assert len(prefix) == 1 + return prefix.pop() + + def get_file_in_archive(self, path: str) -> TextIO: + for zipinfo in self.zip_archive.infolist(): + if zipinfo.filename.startswith(self.zipfile_prefix + path): + return self.zip_archive.open(zipinfo.filename) + raise KeyError + + +def get_file_in_downloadable_zip_archive( + url: str, path: str, data_dir: Path = DEFAULT_DATA_DIR +) -> TextIO: + zip_archive = ZipFile( + open( + streaming_download(url, dirpath=data_dir), + "rb", + ) + ) + for zipinfo in zip_archive.infolist(): + if zipinfo.filename.startswith(path): + return zip_archive.open(zipinfo.filename) + raise KeyError + + +def to_untyped_literal(typed_literal: Literal) -> Literal: + """ + Transform a typed RDFLib Literal to an untyped Literal. + + This function removes the datatype from a typed Literal while preserving + the value and language tag (if present). + + Args: + typed_literal: An RDFLib Literal that may have a datatype + + Returns: + A new untyped Literal with the same value and language tag + + Examples: + >>> from rdflib import Literal + >>> from rdflib.namespace import XSD + >>> + >>> # Typed literal + >>> typed = Literal("42", datatype=XSD.integer) + >>> untyped = to_untyped_literal(typed) + >>> print(untyped) # "42" + >>> print(untyped.datatype) # None + >>> + >>> # Language-tagged literal + >>> lang_typed = Literal("hello", lang="en", datatype=XSD.string) + >>> lang_untyped = to_untyped_literal(lang_typed) + >>> print(lang_untyped) # "hello"@en + >>> print(lang_untyped.datatype) # None + >>> print(lang_untyped.language) # "en" + """ + if not isinstance(typed_literal, Literal): + raise TypeError(f"Expected Literal, got {type(typed_literal)}") + + # Extract the value + value = str(typed_literal) + + # Preserve language tag if present + if typed_literal.language: + return Literal(value, lang=typed_literal.language) + else: + return Literal(value) + + +async def async_request( + url_component: str, data: bytes, host: str, api_key: str, url_iri: str | None = None, ignore_422_errors: bool = False +) -> httpx.Response: + async with httpx.AsyncClient(transport=transport) as client: + if not isinstance(data, bytes): + raise TypeError + + response = await client.post( + urljoin(host, url_component + quote_plus(url_iri or "")), + headers={ + "X-PyST-Auth-Token": api_key, + "Content-Type": "application/json", + }, + content=data, + ) + + # Check for HTTP errors, but don't raise on 409 Conflict (duplicate resource) + # Optionally ignore 422 Unprocessable Entity based on flag + ignored_codes = {409} + if ignore_422_errors: + ignored_codes.add(422) + + if response.status_code >= 400 and response.status_code not in ignored_codes: + try: + response_text = response.text + except Exception: + response_text = "Unable to decode response text" + + error_message = ( + f"HTTP request failed with status {response.status_code}" + ) + if url_iri: + error_message += f" for resource: {url_iri}" + + pprint(response.json()) + raise QUDTLoaderHTTPError( + message=error_message, + status_code=response.status_code, + response_text=response_text, + ) + + return response