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README.md

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# TreeProfiler Overview
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TreeProfiler is a command line tool designed to automate the annotation of large phylogenetic trees with corresponding metadata. It also facilitates the visual exploration of these annotations as phylogenetic profiles, making it a powerful resource for researchers working with complex biological data.
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![treeprofiler abstract](https://github.com/dengzq1234/treeprofiler_gallery/blob/main/TreeProfiler_2025.png?raw=true)
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Key Features:
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- Automated Annotation that integrates metadata into phylogenetic tree, and summarizes annotation in internal nodes, including:
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- Categorical/Numerical metadata in TSV/CSV format

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