diff --git a/.dockerignore b/.dockerignore new file mode 100644 index 00000000..34a2706d --- /dev/null +++ b/.dockerignore @@ -0,0 +1,4 @@ +.vscode +.github +.node_modules +singularity diff --git a/.env.development.sample b/.env.development.sample new file mode 100644 index 00000000..db79cd79 --- /dev/null +++ b/.env.development.sample @@ -0,0 +1,16 @@ +# SERVER_PORT=8000 +# MONGODB_PORT=27017 +# MONGODB_ADMIN_USER=dpdash +# MONGODB_ADMIN_PASSWORD=Get the password from whoever gave you the backup.tar for mongodb. Should match the .env file +# MONGODB_URI=mongodb://${MONGODB_ADMIN_USER}:${MONGODB_ADMIN_PASSWORD}@mongodb:27017/dpdmongo?authSource=admin +# SESSION_SECRET=This can be any secure value + +# RABBIT_PORT=5672 +# RABBIT_HOST=app-tier +# RABBIT_USERNAME=dpdash +# RABBIT_PASSWORD=Use any secure value, but make sure it's the same in the .env file +# RABBIT_ADDRESS=amqp://${RABBIT_USERNAME}:${RABBIT_PASSWORD}@app-tier:5672 +# RABBIT_PUBLISHER_QUEUE=dpdash +# RABBIT_CONSUMER_QUEUE=dpdashResponse + +# LOG_FILE_PATH=logs/app.log diff --git a/.env.sample b/.env.sample new file mode 100644 index 00000000..b9cbfb67 --- /dev/null +++ b/.env.sample @@ -0,0 +1,20 @@ +MONGODB_URI=mongodb://mongodb:27017/dpdmongo?authSource=admin +SESSION_SECRET=foooo +SMTP_HOST=your.smtpserver.com +SMTP_PORT=587 +SMTP_USER=yoursmtpuser +SMTP_PASS=yoursmtppassword +SMTP_REJECT_UNAUTHORIZED=false +ADMIN_EMAIL=adminaccountemail@example.com +EMAIL_SENDER=automatedemailfromaddress@example.com +HOME_URL=your.domain.com +IMPORT_API_USERS=api-user-1,api-user-2 +IMPORT_API_KEYS=api-key-1,api-key-2 + +# For local development with smtp4dev +# SMTP_HOST=smtp4dev +# SMTP_PORT=2525 +# SMTP_USER= +# SMTP_PASS= +# SMTP4DEV_UI_PORT=8080 +# SMTP4DEV_SMTP_PORT=2525 diff --git a/.eslintignore b/.eslintignore new file mode 100644 index 00000000..4908a276 --- /dev/null +++ b/.eslintignore @@ -0,0 +1,5 @@ +dist/ +node_modules/ +cdk_lib/ +public/ +ts_bin/ diff --git a/.eslintrc b/.eslintrc new file mode 100644 index 00000000..d869f2b0 --- /dev/null +++ b/.eslintrc @@ -0,0 +1,65 @@ +{ + "extends": [ + "eslint:recommended", + "plugin:react/recommended", + "prettier", + "universe/web", + "universe/node", + ], + "parser": "@babel/eslint-parser", + "env": { + "browser": true, + "node": true, + }, + "parserOptions": { + "requireConfigFile": false, + "babelOptions": { + "presets": ["@babel/preset-react"], + }, + "ecmaFeatures": { + "jsx": true, + }, + "ecmaVersion": 15, + "sourceType": "module", + "parserOptions": { + "project": "./tsconfig.json", + }, + }, + "plugins": [ + "react", + "jest", + "testing-library", + "no-only-tests", + "sort-keys-fix", + "prettier", + "promise", + ], + "rules": { + "react/prop-types": "off", + "no-unused-vars": [ + "error", + { "varsIgnorePattern": "^_", "argsIgnorePattern": "^_" }, + ], + "import/order": [ + "error", + { + "alphabetize": { + "caseInsensitive": true, + "order": "asc", + }, + "groups": ["builtin", "external", "internal"], + "newlines-between": "always", + "pathGroups": [ + { + "group": "external", + "pattern": "react", + "position": "before", + }, + ], + "pathGroupsExcludedImportTypes": ["react"], + }, + ], + "no-only-tests/no-only-tests": "error", + "react/react-in-jsx-scope": "off", + }, +} diff --git a/.github/workflows/bootstrap_cdk.yaml b/.github/workflows/bootstrap_cdk.yaml new file mode 100644 index 00000000..81bde36e --- /dev/null +++ b/.github/workflows/bootstrap_cdk.yaml @@ -0,0 +1,34 @@ +name: Bootstrap CDK +on: + workflow_dispatch: +jobs: + deploy: + name: Deploy with AWS CDK + runs-on: ubuntu-latest + # These permissions are needed to interact with GitHub's OIDC Token endpoint. + permissions: + id-token: write + contents: read + if: ${{ startsWith(vars.ROLE_ARN, 'arn:aws:iam') }} + steps: + - name: Checkout + uses: actions/checkout@v3 + - name: Configure AWS credentials from Test account + uses: aws-actions/configure-aws-credentials@v4 + with: + role-to-assume: ${{ vars.ROLE_ARN }} + aws-region: us-east-1 + - name: Install dependencies + run: npm ci --legacy-peer-deps + - name: Bootstrap CDK + env: + CDK_DEFAULT_ACCOUNT: ${{ vars.CDK_DEFAULT_ACCOUNT }} + CDK_DEFAULT_REGION: ${{ vars.CDK_DEFAULT_REGION }} + CERT_ARN: ${{ vars.CERT_ARN_STAGING }} + SES_IDENTITY_ARN: ${{ vars.SES_IDENTITY_ARN }} + EMAIL_SENDER: ${{ vars.EMAIL_SENDER }} + ADMIN_EMAIL: ${{ vars.ADMIN_EMAIL }} + BASE_DOMAIN: ${{ vars.BASE_DOMAIN_STAGING }} + APP_MEMORY: ${{ vars.APP_MEMORY || '2048' }} + APP_CPU: ${{ vars.APP_CPU || '1024' }} + run: npm run bootstrap -- --require-approval never diff --git a/.github/workflows/build_images.yaml b/.github/workflows/build_images.yaml new file mode 100644 index 00000000..3e09a633 --- /dev/null +++ b/.github/workflows/build_images.yaml @@ -0,0 +1,45 @@ +name: Build Images +on: + workflow_dispatch: +jobs: + build-and-push: + name: Build and Push Docker Dependencies + runs-on: ubuntu-latest + # These permissions are needed to interact with GitHub's OIDC Token endpoint. + permissions: + id-token: write + contents: read + if: ${{ startsWith(vars.ROLE_ARN, 'arn:aws:iam') }} + steps: + - name: checkout + uses: actions/checkout@v3 + + - name: configure aws credentials + uses: aws-actions/configure-aws-credentials@v4 + with: + role-to-assume: ${{ vars.ROLE_ARN }} + role-session-name: dpdash-ghactions-session + aws-region: us-east-1 + + - name: Login to Amazon ECR + id: login-ecr + uses: aws-actions/amazon-ecr-login@v1 + + - name: Build, tag, and push dpdash docker image to Amazon ECR + env: + REGISTRY: ${{ steps.login-ecr.outputs.registry }} + REPOSITORY: dpdash + IMAGE_TAG: latest + run: | + docker build -t $REGISTRY/$REPOSITORY:$IMAGE_TAG . + docker push $REGISTRY/$REPOSITORY:$IMAGE_TAG + + - name: Build, tag, and push mongo docker image to Amazon ECR + env: + REGISTRY: ${{ steps.login-ecr.outputs.registry }} + REPOSITORY: mongo + IMAGE_TAG: '5.0.21' + run: | + docker pull $REPOSITORY:$IMAGE_TAG + docker tag $REPOSITORY:$IMAGE_TAG $REGISTRY/$REPOSITORY:$IMAGE_TAG + docker push $REGISTRY/$REPOSITORY:$IMAGE_TAG diff --git a/.github/workflows/create_repositories.yaml b/.github/workflows/create_repositories.yaml new file mode 100644 index 00000000..a8daa416 --- /dev/null +++ b/.github/workflows/create_repositories.yaml @@ -0,0 +1,38 @@ +name: Create Repositories +on: + workflow_dispatch: +jobs: + create-repositories: + name: Create Repositories for Docker Dependencies + runs-on: ubuntu-latest + # These permissions are needed to interact with GitHub's OIDC Token endpoint. + permissions: + id-token: write + contents: read + if: ${{ startsWith(vars.ROLE_ARN, 'arn:aws:iam') }} + steps: + - name: checkout + uses: actions/checkout@v3 + + - name: configure aws credentials + uses: aws-actions/configure-aws-credentials@v4 + with: + role-to-assume: ${{ vars.ROLE_ARN }} + role-session-name: dpdash-ghactions-session + aws-region: us-east-1 + + - name: Login to Amazon ECR + id: login-ecr + uses: aws-actions/amazon-ecr-login@v1 + + - name: Create dpdash docker repository in Amazon ECR + env: + REGISTRY: ${{ steps.login-ecr.outputs.registry }} + REPOSITORY: dpdash + run: aws ecr create-repository --repository-name ${REPOSITORY} + + - name: Create mongo docker repository in Amazon ECR + env: + REGISTRY: ${{ steps.login-ecr.outputs.registry }} + REPOSITORY: mongo + run: aws ecr create-repository --repository-name ${REPOSITORY} diff --git a/.github/workflows/deploy_app_prod.yaml b/.github/workflows/deploy_app_prod.yaml new file mode 100644 index 00000000..ecbda462 --- /dev/null +++ b/.github/workflows/deploy_app_prod.yaml @@ -0,0 +1,76 @@ +name: Deploy App Production +on: + workflow_dispatch: + push: + branches: + - master +jobs: + test: + name: Test on Node ${{ matrix.node }} and ${{ matrix.os }} + runs-on: ${{ matrix.os }} + strategy: + matrix: + node: ['latest'] + os: [ubuntu-latest] + steps: + - name: Checkout repo + uses: actions/checkout@v3 + - name: Use Node ${{ matrix.node }} + uses: actions/setup-node@v3 + with: + node-version: ${{ matrix.node }} + - name: Install deps + run: npm ci + - name: Test + run: npm run test + build-and-deploy: + name: Build and Deploy Docker Image + needs: test + runs-on: ubuntu-latest + # These permissions are needed to interact with GitHub's OIDC Token endpoint. + permissions: + id-token: write + contents: read + if: ${{ startsWith(vars.ROLE_ARN, 'arn:aws:iam') }} + steps: + - name: checkout + uses: actions/checkout@v3 + + - name: configure aws credentials + uses: aws-actions/configure-aws-credentials@v4 + with: + role-to-assume: ${{ vars.ROLE_ARN }} + role-session-name: dpdash-ghactions-session + aws-region: us-east-1 + + - name: Login to Amazon ECR + id: login-ecr + uses: aws-actions/amazon-ecr-login@v1 + + - name: Build, tag, and push docker image to Amazon ECR + env: + REGISTRY: ${{ steps.login-ecr.outputs.registry }} + REPOSITORY: dpdash + IMAGE_TAG: ${{ github.sha }} + run: | + docker build -t $REGISTRY/$REPOSITORY:$IMAGE_TAG . + docker push $REGISTRY/$REPOSITORY:$IMAGE_TAG + + - name: Update ECS Task + env: + REGISTRY: ${{ steps.login-ecr.outputs.registry }} + REPOSITORY: dpdash + IMAGE_TAG: ${{ github.sha }} + CLUSTER_NAME: dpDashCluster + TASK_NAME: dpDashTaskDefinition + SERVICE_NAME: dpDashService + run: + | # Grab JSON of current DP Dash task definition, replace container image field with the new container and fix up the JSON, then upload the task and update the service with the new task + export ECR_IMAGE="$REGISTRY/$REPOSITORY:$IMAGE_TAG" + export TASK_DEFINITION=$(aws ecs describe-task-definition --task-definition "$TASK_NAME" --region="us-east-1") + export NEW_TASK_DEFINITION=$(echo $TASK_DEFINITION | jq --arg IMAGE "$ECR_IMAGE" '.taskDefinition | .containerDefinitions[0].image = $IMAGE | del(.taskDefinitionArn) | del(.revision) | del(.status) | del(.requiresAttributes) | del(.compatibilities) | del(.registeredAt) | del(.registeredBy)') + export NEW_REVISION=$(aws ecs register-task-definition --region "us-east-1" --cli-input-json "${NEW_TASK_DEFINITION}") + export NEW_REVISION_DATA=$(echo $NEW_REVISION | jq '.taskDefinition.revision') + export NEW_SERVICE=$(aws ecs update-service --cluster "$CLUSTER_NAME" --service "$SERVICE_NAME" --task-definition "$TASK_NAME" --force-new-deployment) + echo "done" + echo "DP Dash, Revision: ${NEW_REVISION_DATA}, Image: $REGISTRY/$REPOSITORY:$IMAGE_TAG" diff --git a/.github/workflows/deploy_app_staging.yaml b/.github/workflows/deploy_app_staging.yaml new file mode 100644 index 00000000..996c6138 --- /dev/null +++ b/.github/workflows/deploy_app_staging.yaml @@ -0,0 +1,76 @@ +name: Deploy App Staging +on: + workflow_dispatch: + push: + branches: + - pnl-devel +jobs: + test: + name: Test on Node ${{ matrix.node }} and ${{ matrix.os }} + runs-on: ${{ matrix.os }} + strategy: + matrix: + node: ['latest'] + os: [ubuntu-latest] + steps: + - name: Checkout repo + uses: actions/checkout@v3 + - name: Use Node ${{ matrix.node }} + uses: actions/setup-node@v3 + with: + node-version: ${{ matrix.node }} + - name: Install deps + run: npm ci + - name: Test + run: npm run test + build-and-deploy: + name: Build and Deploy Docker Image + needs: test + runs-on: ubuntu-latest + # These permissions are needed to interact with GitHub's OIDC Token endpoint. + permissions: + id-token: write + contents: read + if: ${{ startsWith(vars.ROLE_ARN, 'arn:aws:iam') }} + steps: + - name: checkout + uses: actions/checkout@v3 + + - name: configure aws credentials + uses: aws-actions/configure-aws-credentials@v4 + with: + role-to-assume: ${{ vars.ROLE_ARN }} + role-session-name: dpdash-ghactions-session + aws-region: us-east-1 + + - name: Login to Amazon ECR + id: login-ecr + uses: aws-actions/amazon-ecr-login@v1 + + - name: Build, tag, and push docker image to Amazon ECR + env: + REGISTRY: ${{ steps.login-ecr.outputs.registry }} + REPOSITORY: dpdash + IMAGE_TAG: ${{ github.sha }} + run: | + docker build -t $REGISTRY/$REPOSITORY:$IMAGE_TAG . + docker push $REGISTRY/$REPOSITORY:$IMAGE_TAG + + - name: Update ECS Task + env: + REGISTRY: ${{ steps.login-ecr.outputs.registry }} + REPOSITORY: dpdash + IMAGE_TAG: ${{ github.sha }} + CLUSTER_NAME: dpDashDevCluster + TASK_NAME: dpDashDevTaskDefinition + SERVICE_NAME: dpDashDevService + run: + | # Grab JSON of current DP Dash task definition, replace container image field with the new container and fix up the JSON, then upload the task and update the service with the new task + export ECR_IMAGE="$REGISTRY/$REPOSITORY:$IMAGE_TAG" + export TASK_DEFINITION=$(aws ecs describe-task-definition --task-definition "$TASK_NAME" --region="us-east-1") + export NEW_TASK_DEFINITION=$(echo $TASK_DEFINITION | jq --arg IMAGE "$ECR_IMAGE" '.taskDefinition | .containerDefinitions[0].image = $IMAGE | del(.taskDefinitionArn) | del(.revision) | del(.status) | del(.requiresAttributes) | del(.compatibilities) | del(.registeredAt) | del(.registeredBy)') + export NEW_REVISION=$(aws ecs register-task-definition --region "us-east-1" --cli-input-json "${NEW_TASK_DEFINITION}") + export NEW_REVISION_DATA=$(echo $NEW_REVISION | jq '.taskDefinition.revision') + export NEW_SERVICE=$(aws ecs update-service --cluster "$CLUSTER_NAME" --service "$SERVICE_NAME" --task-definition "$TASK_NAME" --force-new-deployment) + echo "done" + echo "DP Dash, Revision: ${NEW_REVISION_DATA}, Image: $REGISTRY/$REPOSITORY:$IMAGE_TAG" diff --git a/.github/workflows/deploy_infrastructure_prod.yaml b/.github/workflows/deploy_infrastructure_prod.yaml new file mode 100644 index 00000000..afbca4fc --- /dev/null +++ b/.github/workflows/deploy_infrastructure_prod.yaml @@ -0,0 +1,34 @@ +name: Deploy Infrastructure Production +on: + workflow_dispatch: +jobs: + deploy: + name: Deploy with AWS CDK + runs-on: ubuntu-latest + # These permissions are needed to interact with GitHub's OIDC Token endpoint. + permissions: + id-token: write + contents: read + if: ${{ startsWith(vars.ROLE_ARN, 'arn:aws:iam') }} + steps: + - name: Checkout + uses: actions/checkout@v3 + - name: Configure AWS credentials from Test account + uses: aws-actions/configure-aws-credentials@v4 + with: + role-to-assume: ${{ vars.ROLE_ARN }} + aws-region: us-east-1 + - name: Install dependencies + run: npm ci + - name: Deploy Dev + env: + CDK_DEFAULT_ACCOUNT: ${{ vars.CDK_DEFAULT_ACCOUNT }} + CDK_DEFAULT_REGION: ${{ vars.CDK_DEFAULT_REGION }} + CERT_ARN: ${{ vars.CERT_ARN_PRODUCTION }} + SES_IDENTITY_ARN: ${{ vars.SES_IDENTITY_ARN }} + EMAIL_SENDER: ${{ vars.EMAIL_SENDER }} + ADMIN_EMAIL: ${{ vars.ADMIN_EMAIL }} + BASE_DOMAIN: ${{ vars.BASE_DOMAIN_PRODUCTION }} + APP_MEMORY: ${{ vars.APP_MEMORY || '2048' }} + APP_CPU: ${{ vars.APP_CPU || '1024' }} + run: npm run deploy -- --require-approval never diff --git a/.github/workflows/deploy_infrastructure_staging.yaml b/.github/workflows/deploy_infrastructure_staging.yaml new file mode 100644 index 00000000..5b93a9b9 --- /dev/null +++ b/.github/workflows/deploy_infrastructure_staging.yaml @@ -0,0 +1,35 @@ +name: Deploy Infrastructure Staging +on: + workflow_dispatch: +jobs: + deploy: + name: Deploy with AWS CDK + runs-on: ubuntu-latest + # These permissions are needed to interact with GitHub's OIDC Token endpoint. + permissions: + id-token: write + contents: read + if: ${{ startsWith(vars.ROLE_ARN, 'arn:aws:iam') }} + steps: + - name: Checkout + uses: actions/checkout@v3 + - name: Configure AWS credentials from Test account + uses: aws-actions/configure-aws-credentials@v4 + with: + role-to-assume: ${{ vars.ROLE_ARN }} + aws-region: us-east-1 + - name: Install dependencies + run: npm ci + - name: Deploy Dev + env: + CDK_DEFAULT_ACCOUNT: ${{ vars.CDK_DEFAULT_ACCOUNT }} + CDK_DEFAULT_REGION: ${{ vars.CDK_DEFAULT_REGION }} + CERT_ARN: ${{ vars.CERT_ARN_STAGING }} + SES_IDENTITY_ARN: ${{ vars.SES_IDENTITY_ARN }} + EMAIL_SENDER: ${{ vars.EMAIL_SENDER }} + ADMIN_EMAIL: ${{ vars.ADMIN_EMAIL }} + BASE_DOMAIN: ${{ vars.BASE_DOMAIN_STAGING }} + APP_MEMORY: ${{ vars.APP_MEMORY || '2048' }} + APP_CPU: ${{ vars.APP_CPU || '1024' }} + DPDASH_INFRA_STAGING: '1' + run: npm run deploy -- --require-approval never diff --git a/.github/workflows/display_infrastructure_template.yaml b/.github/workflows/display_infrastructure_template.yaml new file mode 100644 index 00000000..d523c76a --- /dev/null +++ b/.github/workflows/display_infrastructure_template.yaml @@ -0,0 +1,35 @@ +name: Display Infrastructure Template +on: + workflow_dispatch: +jobs: + synth: + name: Synthesize Cloudformation with AWS CDK + runs-on: ubuntu-latest + # These permissions are needed to interact with GitHub's OIDC Token endpoint. + permissions: + id-token: write + contents: read + if: ${{ startsWith(vars.ROLE_ARN, 'arn:aws:iam') }} + steps: + - name: Checkout + uses: actions/checkout@v3 + - name: Configure AWS credentials from Test account + uses: aws-actions/configure-aws-credentials@v4 + with: + role-to-assume: ${{ vars.ROLE_ARN }} + aws-region: us-east-1 + - name: Install dependencies + run: npm ci + - name: Synthesize Cloudformation + env: + CDK_DEFAULT_ACCOUNT: ${{ vars.CDK_DEFAULT_ACCOUNT }} + CDK_DEFAULT_REGION: ${{ vars.CDK_DEFAULT_REGION }} + CERT_ARN: ${{ vars.CERT_ARN_STAGING }} + SES_IDENTITY_ARN: ${{ vars.SES_IDENTITY_ARN }} + EMAIL_SENDER: ${{ vars.EMAIL_SENDER }} + ADMIN_EMAIL: ${{ vars.ADMIN_EMAIL }} + BASE_DOMAIN: ${{ vars.BASE_DOMAIN_STAGING }} + APP_MEMORY: ${{ vars.APP_MEMORY || '2048' }} + APP_CPU: ${{ vars.APP_CPU || '1024' }} + DPDASH_INFRA_STAGING: '1' + run: npx cdk synth diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml new file mode 100644 index 00000000..42294191 --- /dev/null +++ b/.github/workflows/main.yml @@ -0,0 +1,25 @@ +name: CI +on: [push] +jobs: + test: + name: Test on Node ${{ matrix.node }} and ${{ matrix.os }} + runs-on: ${{ matrix.os }} + strategy: + matrix: + node: ['latest'] + os: [ubuntu-latest] + steps: + - name: Checkout repo + uses: actions/checkout@v3 + - name: Use Node ${{ matrix.node }} + uses: actions/setup-node@v3 + with: + node-version: ${{ matrix.node }} + - name: Install deps + run: npm ci + - name: Lint + run: npm run lint + - name: Format + run: npm run format + - name: Test + run: npm run test diff --git a/.gitignore b/.gitignore index f411dc58..d7c676ca 100644 --- a/.gitignore +++ b/.gitignore @@ -1,6 +1,37 @@ +# pip Pipfile.lock -docs/build + +# node +node_modules + +# VSCode +.vscode + +# Logs *.log +*.dump + +# Local configs config.js +.env +.env.development +!server/ +server/configs/* +!server/configs/basePathConfig.js +!server/configs/defaultUserConfig.js + +# Built code *.map *.min.js +docs/build +public/js +public/css +public/index.html +dist + +app_build + + +# CDK asset staging directory +.cdk.staging +cdk.out diff --git a/.prettierignore b/.prettierignore new file mode 100644 index 00000000..1eae0cf6 --- /dev/null +++ b/.prettierignore @@ -0,0 +1,2 @@ +dist/ +node_modules/ diff --git a/.prettierrc b/.prettierrc new file mode 100644 index 00000000..0b495108 --- /dev/null +++ b/.prettierrc @@ -0,0 +1,5 @@ +{ + "singleQuote": true, + "semi": false, + "trailingComma": "es5" +} diff --git a/AWS_SETUP.md b/AWS_SETUP.md new file mode 100644 index 00000000..6b224030 --- /dev/null +++ b/AWS_SETUP.md @@ -0,0 +1,140 @@ +### 1. Request DNS Certificate + +### This step is only necessary if your domain is not hosted in AWS Route53. If it is, proceed directly to step 3 + +AWS Documentation: https://docs.aws.amazon.com/acm/latest/userguide/dns-validation.html + +For this step you will require two things: + +1. A domain name for the DP Dash application +2. The ability to set CNAME records for that domain which reference AWS DNS names + +Log in to your AWS console and navigate to the Certificate Manager service. + +![Screenshot of the AWS Certificate Manager link](/doc/assets/aws_setup/01_request_certificate//create_certificate_01.png) + +Click the Request button in the top right corner. + +![Screenshot of the Request Certificate button](/doc/assets/aws_setup/01_request_certificate//create_certificate_02.png) + +Select "Request a public certificate". + +![Screenshot of the Request Certificate form](/doc/assets/aws_setup/01_request_certificate//create_certificate_04.png) + +Enter the fully qualified domain name at which the DP Dash app will be hosted, e.g. `dpdash.mydomain.com` if using a subdomain. Leave all other settings unchanged and click "Request". + +AWS will provide a CNAME record to add to your DNS records. Set this record in the management system for your domain and AWS will automatically verify it and create your certificate. + +![Screenshot of CNAME values for certificate verification](/doc/assets/aws_setup/01_request_certificate//create_certificate_05.png) + +Copy the ARN of the issued certificate and save it locally. We will use it when configuring the deployment for your environment. + +![Screenshot of ARN for certificate](/doc/assets/aws_setup/01_request_certificate//create_certificate_06.png) + +### 2. Verify an email identity with Simple Email Service + +### This step is only necessary if your domain is not hosted in AWS Route53. If it is, proceed directly to step 3 + +AWS Documentation: https://docs.aws.amazon.com/ses/latest/dg/creating-identities.html#just-verify-domain-proc + +On the AWS Simple Email Service dashboard, navigate to "Verified Identities" and select "Create Identity". + +![Screenshot of the SES Verified Identities page](/doc/assets/aws_setup/02_verify_email_domain/verify_email_domain_01.png) + +On the Create Identity form, select Identity Type of Domain and a domain of your root domain (e.g. `dpdash.com` even if hosting at `app.dpdash.com`). + +![Screenshot of the SES Create Domain page](/doc/assets/aws_setup/02_verify_email_domain/verify_email_domain_02.png) + +Select Create Identity. On the page for the new identity, scroll down to the "Publish DNS Records" section and select Download CSV Record Set at the bottom of the section. Set all of these records in the DNS records for your domain and wait for AWS to automatically verify domain ownership. + +![Screenshot of the Download CSV Record Set link](/doc/assets/aws_setup/02_verify_email_domain/verify_email_domain_03.png) + +Save the domain you used locally. We will use it when configuring the deployment for your environment. + +### 3. Create AWS Role for Github Actions + +AWS Documentation: https://aws.amazon.com/blogs/security/use-iam-roles-to-connect-github-actions-to-actions-in-aws/ + +Navigate to the IAM service in the AWS Console. + +![Screenshot of the IAM link](/doc/assets/aws_setup/03_create_github_role/create_github_role_01.png) + +Select "Roles" from the IAM Dashboard and click the Create button. + +![Screenshot of IAM dashboard](/doc/assets/aws_setup/03_create_github_role/create_github_role_02.png) + +For Trusted Entity select "Web Identity". For Identity Provider select "token.actions.githubusercontent.com". For Audience select "sts.amazonaws.com". Enter your Github Organization Name and the repo you wish to grant access to. Click "Create". + +![Screenshot of role creation form with values filled out](/doc/assets/aws_setup/03_create_github_role/create_github_role_03.png) + +Copy the ARN of the new role and save it locally. We will use it when configuring the deployment for your environment. + +### 4. Bootstrap the CDK and Generate Secrets + +This step will only need to be completed if the CDK has not been bootstrapped for your account/AWS environment. Ensure you are logged in via the AWS CLI. From the root of the project directory run: + +```bash +npm i +npm run bootstrap +``` + +Create secret values in AWS encrypted SSM Parameter store: + +```bash +export DPDASH_MONGODB_ADMIN_USER_DEV=dpdash +export DPDASH_IMPORT_API_USERS_DEV=dev-api-user +./bin/generate-secrets.sh +``` + +Secret values can be retrieved and decryted via the `./bin/echo-secrets.sh` script. THIS WILL LOG SECRET VALUES TO THE CONSOLE. + +### 5. Build and Deploy Docker Images + +Run the following commands from the root of this repository: + +```bash +export AWS_ACCOUNT_ID=$(aws sts get-caller-identity --query "Account") +docker pull mongo:5.0.21 +docker build -t dpdash:latest . +aws ecr get-login-password --region us-east-1 | docker login --username AWS --password-stdin $AWS_ACCOUNT_ID.dkr.ecr.us-east-1.amazonaws.com +docker tag mongo:5.0.21 $AWS_ACCOUNT_ID.dkr.ecr.us-east-1.amazonaws.com/mongo:5.0.21 +docker push $AWS_ACCOUNT_ID.dkr.ecr.us-east-1.amazonaws.com/mongo:5.0.21 + +docker tag dpdash:latest $AWS_ACCOUNT_ID.dkr.ecr.us-east-1.amazonaws.com/dpdash:latest +docker push $AWS_ACCOUNT_ID.dkr.ecr.us-east-1.amazonaws.com/dpdash:latest +``` + +### 6. Set Github Action Variables and Deploy + +Github Documentation: https://docs.github.com/en/actions/learn-github-actions/variables#creating-configuration-variables-for-a-repository + +Navigate to your Github repository and select the Settings tab. Open the "Secrets and Variables" menu on the left-hand side and select "Actions", then "New Variable". + +![Screenshot of the Github Settings Menu](/doc/assets/aws_setup/06_set_github_variables/set_github_variables_01.png) + +![Screenshot of Github Actions Variables](/doc/assets/aws_setup/06_set_github_variables/set_github_variables_02.png) + +Create 2 variables: + +1. Create the variable ROLE_ARN with a value of the ARN of your Role from Step 3. +2. Create the variable BASE_DOMAIN with the root domain you will use to host the app (e.g. `dpdash.com`). If you use an outside DNS rather than Route53, this will be the domain used in Step 2. + +If you keep your domain outside of Route53, create one more variable: + +1. Create the variable CERT_ARN with a value of the ARN of your AWS Certificate from Step 1. + +Navigate to the Actions tab and the Deploy Infrastructure workflow. Select "Run Workflow". The application will deploy. + +![Screenshot of Actions tab with Run Workflow button](/doc/assets/aws_setup/06_set_github_variables/set_github_variables_03.png) + +### 7. Check the Deployment and Set CNAME Record + +To verify that the application is deployed, view the DNS name with the following command: + +```bash +aws elbv2 describe-load-balancers --names dpDashDevLoadBalancer --query "LoadBalancers[0].DNSName" +``` + +Visit this domain in your browser via `https://`. You will get a warning from your browser that the certificate is incorrect. This is the expected behavior and means that the server is responding appropriately. It is not necessary to override the browser warning + +You may then set a CNAME record in your DNS system for the intended domain of this application, and direct requests to the URL retrieved from the above command. diff --git a/Docker_SETUP.md b/Docker_SETUP.md new file mode 100644 index 00000000..04beef45 --- /dev/null +++ b/Docker_SETUP.md @@ -0,0 +1,58 @@ +# Local Development Using Docker + +## Requirements + +- Download Docker +- Set up local ENV Variables +- Import Data + +## Docker + +Download Docker for your os type [Docker Website](https://www.docker.com/) + +## Set Up ENV Variables + +- Create a .env file +- Add these [variables to your file ](/.env.sample) +- Create a env.development file +- Add these [variables to your file ](/.env.development.sample) +- Ask a Team Member for the values and an export of their `dpdash-mongodb` volume + +## Import Data + +Create a new docker volume with the `dpdash-mongodb`. + +```sh +docker volume create dpdash-mongodb +``` + +Create a container to hold the volume + +```sh + docker run -v dpdash-mongodb:/dpdash-mongodb --name mongo_restore ubuntu /bin/bash +``` + +Unpack the `backup.tar` file into the volume. + +```sh + docker run --rm --volumes-from mongo_restore -v $(pwd):/backup ubuntu bash -c "cd /dpdash-mongodb && tar xvf /backup/backup.tar --strip 1" + +``` + +## Start the project + +- Once Set up, use the command `docker compose up` + +## For Onboarding: Export Data + +Spin up a container with the volume. Use Ubuntu because we gotta keep Mongo from writing to it. + +```sh + docker run -v dpdash-mongodb:/dpdash-mongodb --name mongo_backup ubuntu /bin/bash +``` + +Copy the volume contents to `./backup.tar` + +```sh +docker run --rm --volumes-from mongo_backup -v $(pwd):/backup ubuntu tar cvf /backup/backup.tar /dpdash-mongodb +``` diff --git a/Dockerfile b/Dockerfile new file mode 100644 index 00000000..604d9bec --- /dev/null +++ b/Dockerfile @@ -0,0 +1,19 @@ +FROM node:22 + +COPY . /src + +WORKDIR /src + +RUN wget https://truststore.pki.rds.amazonaws.com/global/global-bundle.pem +RUN npm install + +ENV NODE_OPTIONS=--openssl-legacy-provider + +RUN npm run build +RUN npm run transpile + +ENV NODE_ENV=production +CMD [ "node", "dist/bin/www.js" ] + +EXPOSE 8000 + diff --git a/Makefile b/Makefile new file mode 100644 index 00000000..ebbeef73 --- /dev/null +++ b/Makefile @@ -0,0 +1,10 @@ +START=$(pwd) + +dev: + docker compose --env-file .env.development up + +dev-smtp: + docker compose --env-file .env.development --profile smtp up + +close: + docker compose --env-file .env.development down --rmi all diff --git a/ON_PREM_DEPLOYMENT.md b/ON_PREM_DEPLOYMENT.md new file mode 100644 index 00000000..067d28ff --- /dev/null +++ b/ON_PREM_DEPLOYMENT.md @@ -0,0 +1,264 @@ +# Running the Application On Premise with Docker Compose + +## Prerequisites + +1. Docker and Docker Compose should be installed on your system. +2. Port `27017/tcp` should be opened through `firewall-cmd` for external mongodb connection. +3. MGB mail relay server should be set in postfix configuration and postfix should be running. + +## Setup Instructions + +### In an MGB Provisioned VM + +#### 1. Environment Configuration + +i. Create a `.env` file in application root directory + +ii. Copy the contents from `.env.sample` + +iii. Set the following required variables: + ``` + MONGODB_URI=mongodb://mongodb:27017/dpdmongo?authSource=admin + SESSION_SECRET= + SMTP_HOST=MGB mail relay server + SMTP_PORT=25 + SMTP_USER= + SMTP_PASS= + SMTP_REJECT_UNAUTHORIZED=false + ADMIN_EMAIL= + EMAIL_SENDER= + HOME_URL=https://hostname.mgb.org + IMPORT_API_USERS= + IMPORT_API_KEYS= + ``` + +#### 2. Obtain official SSL certificate from rcc[dot]partners[dot]org + +Obtain official SSL certificate from rcc[dot]partners[dot]org. You can just +download the certificate and key in your computer. You will need to upload +these to Nginx proxy manager using GUI later. + +#### 3. Launch the Application + +From the application root directory, run: + +```bash +docker compose up +``` + +This will start all required services in background: + +- nginx-proxy-manager (web server that allows configuring SSL certificates and proxy) +- node-app (application server) +- mongodb (database) + +To run in detached mode: + +```bash +docker compose up -d +``` + +To stop the application: + +```bash +docker compose down +``` + +#### 4. Access the Application + +First, you will have to set up Nginx proxy via http://hostname.mgb.org:81. Then you can access the application at https://hostname.mgb.org + +i. Open up `81/tcp` port through `firewall-cmd` in hostname.mgb.org. Since the VM is head-less, this is the only way you can access +Nginx Proxy Manager from outside the VM. + +ii. Access the Nginx Proxy Manager admin interface at: http://hostname.mgb.org:81 + + - Default login: `admin@example.com` / `changeme` + + - Upload the official SSL certificate that you downloaded: + Image + + - From Nginx Proxy Manager dashboard, add this proxy: + + Image + + - From SSL tab, also attach the uploaded certificate to your domain. + +iii. Access the application at: https://hostname.mgb.org + - Upon signing up, you may get some `Forbidden` issues. But those should go away once the DPdash admin grants you access to some data. + - Import data to mongodb and contact the DPdash admin to get access. + + +--- + + +### In a Private Workstation + +#### 1. Environment Configuration + +i. Create a `.env` file in application root directory + +ii. Copy the contents from `.env.sample` + +iii. Set the following required variables: + ``` + MONGODB_URI=mongodb://mongodb:27017/dpdmongo?authSource=admin + SESSION_SECRET= + SMTP_HOST= + SMTP_PORT=25 + SMTP_USER= + SMTP_PASS= + ADMIN_EMAIL= + EMAIL_SENDER= + HOME_URL=https://dpdash.local + IMPORT_API_USERS= + IMPORT_API_KEYS= + ``` + +To find `SMTP_HOST`, send yourself an email from the server. Open the email within Outlook and `View`-->`View message details`. +Look for something like: + +``` +Received: from unknown (HELO pnl-xtreme.partners.org) ([170.123.12.123]) + by ob1.hc6077-55.iphmx.com +``` + +The last one is the `SMTP_HOST`. + +#### 2. Local Domain Setup + +The application is configured to use the hostname `dpdash.local`. Add this to your hosts file: + +``` +# On Linux/Mac: Edit /etc/hosts +# On Windows: Edit C:\Windows\System32\drivers\etc\hosts +127.0.0.1 dpdash.local +``` + +#### 3. Generate Self-Signed Certificate + +Run the provided script to generate a self-signed certificate: + +```bash +chmod +x make-cert.sh +./make-cert.sh +``` + +It will create two files in `certs/` directory: + +``` +$ ls certs/ +selfsigned.crt selfsigned.key +``` + +#### 4. Launch the Application + +From the application root directory, run: + +```bash +docker compose up +``` + +This will start all required services in background: + +- nginx-proxy-manager (web server that allows configuring SSL certificates and proxy) +- node-app (application server) +- mongodb (database) + +To run in detached mode: + +```bash +docker compose up -d +``` + +To include the SMTP testing server: + +```bash +docker compose --profile smtp up +``` + +To stop the application: + +```bash +docker compose down +``` + +#### 5. Access the Application + +First, you will have to set up Nginx proxy via http://dpdash.local:81. Then you can access the application at https://dpdash.local + +i. Access the Nginx Proxy Manager admin interface at: http://dpdash.local:81 + + - Default login: `admin@example.com` / `changeme` + - Upload the custom SSL certificate that you created: + image + + - From Nginx Proxy Manager dashboard, add this proxy: + image + + - Attach the SSL certificate: + image + + +ii. Access the application at: https://dpdash.local/ + + - Your browser will show a security warning because of the self-signed certificate. This is expected for local development. + - Upon signing up, you may get some `Forbidden` issues. But those should go away once the DPdash admin grants you access to some data. + - Import data to mongodb and contact the DPdash admin to get access. + +##### Security Warning + +Nginx Proxy Manager should not be exposed to the internet. It is recommended to run it behind another web server that handles authentication and SSL termination. It also isn't required for production, as you can configure SSL termination and authentication at the load balancer level. It is necessary for local development because the application uses secure cookies AND it is considered a best practice to route all traffic over https. + + +## Maintenance + +### 1. Connecting directly to Mongo + +Find the container ID of the mongo container with `docker ps` and then run `docker exec -it /bin/bash` to get a terminal within the container. From there you can run `mongosh` to connect to the database. + +Alternatively, you can download [mongosh](https://www.mongodb.com/try/download/shell) and connect directly as: + +``` +mongosh "mongodb://127.0.0.1:27017/dpdmongo?directConnection=true&serverSelectionTimeoutMS=2000&appName=mongosh+2.3.8" +``` + +### 2. Importing charts, configs, users + +Due to Gnar company's changes in database structure, [this](https://github.com/AMP-SCZ/utility/blob/f84e3d5a211d5e10020c670994dd78e79f07fb17/dpdash_ci_cd/dpdash_ci_cd.sh#L22-L29) method of `mongoimport` no longer works. The new method is: + +``` +mongoimport --uri="mongodb://127.0.0.1:27017/dpdmongo?directConnection=true&serverSelectionTimeoutMS=2000&appName=mongosh+2.3.8" --collection=charts charts_20230728_ci_cd.json +mongoimport --uri="mongodb://127.0.0.1:27017/dpdmongo?directConnection=true&serverSelectionTimeoutMS=2000&appName=mongosh+2.3.8" --collection=configs configs_20230728_ci_cd.json +mongoimport --uri="mongodb://127.0.0.1:27017/dpdmongo?directConnection=true&serverSelectionTimeoutMS=2000&appName=mongosh+2.3.8" --collection=users users_20230728_ci_cd.json +``` + +The trailing JSONs can be obtained from rc-predict.partners.org's `mongoexport`. + +
+ mongoexport + + ``` + mongoexport --ssl --sslCAFile=$state/ssl/ca/cacert.pem --sslPEMKeyFile=$state/ssl/mongo_client.pem --uri="mongodb://dpdash:$MONGO_PASS@$HOST:$PORT/dpdata?authSource=admin" --collection=charts --out=/tmp/charts_${datestamp}.json + mongoexport --ssl --sslCAFile=$state/ssl/ca/cacert.pem --sslPEMKeyFile=$state/ssl/mongo_client.pem --uri="mongodb://dpdash:$MONGO_PASS@$HOST:$PORT/dpdmongo?authSource=admin" --collection=configs --out=/tmp/configs_${datestamp}.json + mongoexport --ssl --sslCAFile=$state/ssl/ca/cacert.pem --sslPEMKeyFile=$state/ssl/mongo_client.pem --uri="mongodb://dpdash:$MONGO_PASS@$HOST:$PORT/dpdmongo?authSource=admin" --collection=users --out=/tmp/users_${datestamp}.json + ``` + +
+ + +### 2. Importing data + +The `IMPORT_API_USERS` and `IMPORT_API_KEYS` environment variables are used to authenticate API requests to import data. You can use these credentials with the import script at https://github.com/AMP-SCZ/dpimport to import data to the database. The updated script is on the branch `381-update-import-script-to-json-payload` and can be run by creating a config file like so: + +```yaml +api_url: http://your.app.example.com/api/v1/import/data/ +api_user: importer +api_key: super_secret +``` + +And running the script with the following command: + +```bash +python import.py -c config.yaml /PATH/TO/CSV/DATA +``` diff --git a/README.md b/README.md deleted file mode 100644 index d3027b9a..00000000 --- a/README.md +++ /dev/null @@ -1 +0,0 @@ -Read the documentation [here](http://docs.neuroinfo.org/dpdash/en/latest/)! diff --git a/app.js b/app.js deleted file mode 100644 index 7b17d9b1..00000000 --- a/app.js +++ /dev/null @@ -1,198 +0,0 @@ -var createError = require('http-errors'); -var express = require('express'); -var path = require('path'); -var helmet = require('helmet'); -var morgan = require('morgan'); -var winston = require('winston'); -var favicon = require('serve-favicon'); -var cookieParser = require('cookie-parser'); -var expressSession = require('express-session'); -var MongoStore = require('connect-mongo')(expressSession); -var MongoDB = require('mongodb'); -var MongoClient = MongoDB.MongoClient; -var passport = require('passport'); -var ldapStrategy = require('passport-ldapauth'); -var passportLocal = require('passport-local'); -var localStrategy = passportLocal.Strategy; -var co = require('co'); -var bodyParser = require('body-parser'); -var methodOverride = require('method-override'); - - -var indexRouter = require('./routes/index'); -//var usersRouter = require('./routes/users'); -var configPath = process.env.DPDASH_CONFIG || './config'; -var config = require(configPath); - -var app = express(); - -/** favicon setup */ -app.use(favicon(path.join(__dirname, '/public/img/favicon.png'))); - -/** security setup */ -app.use(helmet({ - noCache: true, - noSniff: true -})); - -/** logger setup */ -morgan.token('remote-user', function(req, res) { - return (req.user) ? req.user : 'unidentified'; -}); -var logger = winston.createLogger({ - transports: [ - new winston.transports.File({ - level: 'verbose', - filename: config.app.logfile, - handleExceptions: true, - json: true, - colorize: false - }), - new winston.transports.Console({ - level: 'debug', - handleExceptions: true, - json: false, - colorize: true - }) - ], - exitOnError: false -}); -logger.stream = { - write: function(message, encoding) { - logger.info(message) - } -}; -app.use(morgan('combined', {'stream': logger.stream})); - -/** parsers setup */ -app.use(express.static(path.join(__dirname, 'public'))); -app.use(cookieParser(config.session.secret)); -app.use(bodyParser.json({limit: '50mb', extended: true})); -app.use(bodyParser.urlencoded({limit: '50mb', extended: true})); -app.set('view engine', 'html'); -app.use(methodOverride()); - - -/* database setup */ -var mongodb; -var mongodbPromise = co(function* () { - var mongoURI = 'mongodb://' + config.database.mongo.username + ':'; - mongoURI = mongoURI + config.database.mongo.password + '@' + config.database.mongo.host; - mongoURI = mongoURI + ':' + config.database.mongo.port + '/' + config.database.mongo.authSource; - return yield MongoClient.connect(mongoURI, config.database.mongo.server); -}).then(function(res) { - mongodb = res.db(config.database.mongo.appDB); - mongodb.dropCollection('sessions'); //clear outstanding sessions - return mongodb; -}); - -/** session store setup */ -app.set('trust proxy', 1); -app.use(expressSession({ - secret: config.session.secret, - saveUninitialized: config.session.saveUninitialized, - resave: config.session.resave, - cookie: config.session.cookie, - store: new MongoStore({ - dbPromise : mongodbPromise, - autoRemove: 'native' - }) -})); - -/** authenticator setup */ -if(config.auth.useLDAP) { - //passport ldap strategy - passport.use(new ldapStrategy({ - server: config.auth.ldap, - usernameField: config.auth.usernameField, - passwordField: config.auth.passwordField - })); -} - -//passport local strategy -passport.use('local-login', new localStrategy({ - usernameField: config.auth.usernameField, - passwordField: config.auth.passwordField - }, - function(username, password, done) { - mongodb.collection('users').findOne({uid: username}).then(function (user) { - if (!user) { - return done(null, false); - } else { - return done(null, user); - } - }); - } -)); - -//passport local registeration -passport.use('local-signup', new localStrategy({ - usernameField: config.auth.usernameField, - passwordField: config.auth.passwordField, - passReqToCallback : true - }, - function(req, username, password, done) { - mongodb.collection('users').findOne({uid: username}).then(function (err, user) { - if (!user) { - return done(null, false, req.body); - } - return done(null, true, null); - }); - } -)); - -app.use(passport.initialize()); -app.use(passport.session()); - -app.use('/', indexRouter); -app.use('/css', express.static(path.join(__dirname, '/public/css'))); -app.use('/js', express.static(path.join(__dirname, '/public/js'))); -app.use('/img', express.static(path.join(__dirname, '/public/img'))); -//app.use('/users', usersRouter); - -/** error handlers setup */ - -//catch 404 and forward to error handler -app.use(function(req, res, next) { - if(req.accepts('html')) { - res.status(404); - return; - } - - if(req.accepts('json')) { - res.status(404).json({ error: '404: Page not found.' }); - return; - } - - res.status(404).type('txt').send('ERROR 404: Page not found.'); - - next(err); -}); - -//catch any other error -app.use(function(err, req, res, next) { - console.log(err); - var errStatus = err.status || 500; - var errMessage = ''; - switch (errStatus) { - case 400: - errMessage = 'Bad Request'; - break; - case 401: - errMessage = 'Unauthorized'; - break; - case 403: - errMessage = 'Forbidden'; - break; - case 500: - errMessage = 'Internal Server Error'; - break; - } /* - res.status(errStatus).json({ - status: 'error', - message: errMessage - }); */ -}); - - -module.exports = app; diff --git a/assets/dpdash.png b/assets/dpdash.png new file mode 100755 index 00000000..2d8715b4 Binary files /dev/null and b/assets/dpdash.png differ diff --git a/assets/favicon.ico b/assets/favicon.ico new file mode 100644 index 00000000..252b1547 Binary files /dev/null and b/assets/favicon.ico differ diff --git a/assets/favicon.png b/assets/favicon.png new file mode 100644 index 00000000..252b1547 Binary files /dev/null and b/assets/favicon.png differ diff --git a/bin/echo-secrets.sh b/bin/echo-secrets.sh new file mode 100755 index 00000000..41f3b368 --- /dev/null +++ b/bin/echo-secrets.sh @@ -0,0 +1,35 @@ +#!/bin/bash + +# Before executing: +# Login to the AWS CLI with an account that has access to the SSM service + +read -p "This script will log secret values to the console. Are you sure you wish to proceed? (y/n)" +if [[ $REPLY =~ ^[Yy]$ ]] +then + echo "Staging Secret Values:" + aws ssm get-parameter \ + --name "DPDASH_IMPORT_API_USERS_DEV" \ + --with-decryption + + aws ssm get-parameter \ + --name "DPDASH_IMPORT_API_KEYS_DEV" \ + --with-decryption + + aws ssm get-parameter \ + --name "DPDASH_SESSION_SECRET_DEV" \ + --with-decryption + + echo "Production Secret Values:" + + aws ssm get-parameter \ + --name "DPDASH_IMPORT_API_USERS" \ + --with-decryption + + aws ssm get-parameter \ + --name "DPDASH_IMPORT_API_KEYS" \ + --with-decryption + + aws ssm get-parameter \ + --name "DPDASH_SESSION_SECRET" \ + --with-decryption +fi diff --git a/bin/generate-secrets.sh b/bin/generate-secrets.sh new file mode 100755 index 00000000..69e20b67 --- /dev/null +++ b/bin/generate-secrets.sh @@ -0,0 +1,56 @@ +#!/bin/bash + +# Before executing: +# Login to the AWS CLI with an account that has access to the SSM service + +# Set an environment variable as a comma separated list of usernames for the +# staging API users named DPDASH_IMPORT_API_USERS_DEV + +# Set an environment variable as a comma separated list of usernames for the +# production API users named DPDASH_IMPORT_API_USERS + +aws ssm put-parameter \ + --name "DPDASH_IMPORT_API_USERS_DEV" \ + --value $DPDASH_IMPORT_API_USERS_DEV \ + --type SecureString \ + --tags "Key=Name,Value=dpdash" + +aws ssm put-parameter \ + --name "DPDASH_IMPORT_API_USERS" \ + --value $DPDASH_IMPORT_API_USERS \ + --type SecureString \ + --tags "Key=Name,Value=dpdash" + +export DPDASH_NUMBER_OF_USERS_DEV=$(($(echo $DPDASH_IMPORT_API_USERS_DEV | tr -cd , | wc -c) + 1)) +aws ssm put-parameter \ + --name "DPDASH_IMPORT_API_KEYS_DEV" \ + --value $( + for i in seq $DPDASH_NUMBER_OF_USERS_DEV; do + echo $(openssl rand -base64 32 | tr -d "+=/") + done | tr '\n' ',' + ) \ + --type SecureString \ + --tags "Key=Name,Value=dpdash" + +export DPDASH_NUMBER_OF_USERS=$(($(echo $DPDASH_IMPORT_API_USERS | tr -cd , | wc -c) + 1)) +aws ssm put-parameter \ + --name "DPDASH_IMPORT_API_KEYS" \ + --value $( + for i in seq $DPDASH_NUMBER_OF_USERS; do + echo $(openssl rand -base64 32 | tr -d "+=/") + done | tr '\n' ',' + ) \ + --type SecureString \ + --tags "Key=Name,Value=dpdash" + +aws ssm put-parameter \ + --name "DPDASH_SESSION_SECRET" \ + --value $(openssl rand -base64 32 | tr -d "+=/") \ + --type SecureString \ + --tags "Key=Name,Value=dpdash" + +aws ssm put-parameter \ + --name "DPDASH_SESSION_SECRET_DEV" \ + --value $(openssl rand -base64 32 | tr -d "+=/") \ + --type SecureString \ + --tags "Key=Name,Value=dpdash" diff --git a/bin/manual-app-deploy.sh b/bin/manual-app-deploy.sh new file mode 100644 index 00000000..3bbb826a --- /dev/null +++ b/bin/manual-app-deploy.sh @@ -0,0 +1,21 @@ +#!/bin/bash + +# Set the following environment variables to deploy to Staging: +# export CLUSTER_NAME: dpDashDevCluster +# export TASK_NAME: dpDashDevTaskDefinition +# export SERVICE_NAME: dpDashDevService + +AWS_ACCOUNT_ID=$(aws sts get-caller-identity --query "Account") + +docker build -t dpdash:latest . +aws ecr get-login-password --region us-east-1 | docker login --username AWS --password-stdin $AWS_ACCOUNT_ID.dkr.ecr.us-east-1.amazonaws.com + +ECR_IMAGE="$AWS_ACCOUNT_ID.dkr.ecr.us-east-1.amazonaws.com/dpdash:latest" + +docker tag dpdash:latest $ECR_IMAGE +docker push $ECR_IMAGE + +TASK_DEFINITION=$(aws ecs describe-task-definition --task-definition "$TASK_NAME" --region="us-east-1") +NEW_TASK_DEFINITION=$(echo $TASK_DEFINITION | jq --arg IMAGE "$ECR_IMAGE" '.taskDefinition | .containerDefinitions[0].image = $IMAGE | del(.taskDefinitionArn) | del(.revision) | del(.status) | del(.requiresAttributes) | del(.compatibilities) | del(.registeredAt) | del(.registeredBy)') +aws ecs register-task-definition --region "us-east-1" --cli-input-json "${NEW_TASK_DEFINITION}" +aws ecs update-service --cluster "$CLUSTER_NAME" --service "$SERVICE_NAME" --task-definition "$TASK_NAME" --force-new-deployment diff --git a/bin/www b/bin/www deleted file mode 100755 index b53f9d21..00000000 --- a/bin/www +++ /dev/null @@ -1,190 +0,0 @@ -#!/usr/bin/env node - -/** - * Module dependencies. - */ - -var app = require('../app'); -var debug = require('debug')('po:server'); -var http = require('http'); -var configPath = process.env.DPDASH_CONFIG || '../config'; -var config = require(configPath); -var amqp = require('amqplib/callback_api'); -var CronJob = require('cron').CronJob; - -const { spawn } = require('child_process'); - -/** - * Get port from environment and store in Express. - */ - -var port = normalizePort(config.app.port); -app.set('port', port); - -console.log(port); - -/** - * Create HTTP server. - */ - -var server = http.createServer(app); - -/** - * Listen on provided port, on all network interfaces. - */ - -server.listen(port, config.app.address); -server.on('error', onError); -server.on('listening', onListening); - -/** - * Normalize a port into a number, string, or false. - */ - -function normalizePort(val) { - var port = parseInt(val, 10); - - if (isNaN(port)) { - // named pipe - return val; - } - - if (port >= 0) { - // port number - return port; - } - - return false; -} - -/** - * Create a websocket - */ -var io = require('socket.io')(server, { - transports: ['websocket', 'polling'], - pingInterval: 1500, - pingTimeout: 2000 -}); //squid v2 - -app.set('socketio', io); - -/* authenticated */ -io.use(function(socket, next){ - if (socket.request.headers.cookie) return next(); - next(new Error('Authentication error')); -}); - -/* Not authenticated */ -io.on('connection', function(socket) { - socket.on('subscribe', function(roomID) { - socket.join(roomID); - }); - socket.on('unsubscribe', function(roomID) { - socket.leave(roomID); - }); -}); - -/** - * Create a rabbitmq connection - */ -var amqpAddress = 'amqps://' + config.rabbitmq.username; -amqpAddress = amqpAddress + ':' + config.rabbitmq.password; -amqpAddress = amqpAddress + '@' + config.rabbitmq.host + ':' + config.rabbitmq.port; -amqp.connect(amqpAddress, config.rabbitmq.opts, function(err, conn) { - if(err) console.log(err); - conn.createChannel(function(err, ch) { - if(err) console.log(err); - ch.assertQueue(config.rabbitmq.consumerQueue, {durable: false}, function(err, q) { - if(err) console.log(err); - consumer(conn, ch, q.queue); - }); - }); -}); - - -/* -* Set up crons for data and acl import -*/ -for(hour in config.rabbitmq.sync.hours) { - if (config.rabbitmq.sync.hours[hour] < 10) { - var syncTime = '00 00 0' + config.rabbitmq.sync.hours[hour] + ' * * 0-6'; - } else { - var syncTime = '00 00 ' + config.rabbitmq.sync.hours[hour] + ' * * 0-6'; - } - new CronJob({ - cronTime: syncTime, - onTick: function() { - var importer = spawn('node', ['./utils/importer.js']); - - importer.stdout.on('data', (data) => { - console.log(`stdout: ${data}`); - }); - - importer.stderr.on('data', (data) => { - console.log(`stderr: ${data}`); - }); - - importer.on('close', (code) => { - console.log(`child process exited with code ${code}`); - }); - }, - start: true, - timeZone: config.rabbitmq.sync.timezone - }); -} - -/* socket.io connection */ -var dashboardNsp = io.of('/dashboard'); - -function consumer(conn, ch, replyTo) { - ch.consume(replyTo, function(msg) { - var response = JSON.parse(msg.content.toString()); - var taskStatus = response.status; - if (taskStatus === 'PROCESSING') { - dashboardNsp.emit(taskStatus, { taskId : response.task_id }); - } else if (taskStatus === 'SUCCESS') { - dashboardNsp.emit(taskStatus, { taskId : response.task_id }); - } - }); -} - - -/** - * Event listener for HTTP server "error" event. - */ - -function onError(error) { - if (error.syscall !== 'listen') { - throw error; - } - - var bind = typeof port === 'string' - ? 'Pipe ' + port - : 'Port ' + port; - - // handle specific listen errors with friendly messages - switch (error.code) { - case 'EACCES': - console.error(bind + ' requires elevated privileges'); - process.exit(1); - break; - case 'EADDRINUSE': - console.error(bind + ' is already in use'); - process.exit(1); - break; - default: - throw error; - } -} - -/** - * Event listener for HTTP server "listening" event. - */ - -function onListening() { - var addr = server.address(); - var bind = typeof addr === 'string' - ? 'pipe ' + addr - : 'port ' + addr.port; - debug('Listening on ' + bind); -} diff --git a/cdk.json b/cdk.json new file mode 100644 index 00000000..228e9158 --- /dev/null +++ b/cdk.json @@ -0,0 +1,58 @@ +{ + "app": "npx ts-node --prefer-ts-exts ts_bin/dpdash-cdk.ts", + "watch": { + "include": ["**"], + "exclude": [ + "README.md", + "cdk*.json", + "**/*.d.ts", + "**/*.js", + "tsconfig.json", + "package*.json", + "yarn.lock", + "node_modules", + "test" + ] + }, + "context": { + "@aws-cdk/aws-lambda:recognizeLayerVersion": true, + "@aws-cdk/core:checkSecretUsage": true, + "@aws-cdk/core:target-partitions": ["aws", "aws-cn"], + "@aws-cdk-containers/ecs-service-extensions:enableDefaultLogDriver": true, + "@aws-cdk/aws-ec2:uniqueImdsv2TemplateName": true, + "@aws-cdk/aws-ecs:arnFormatIncludesClusterName": true, + "@aws-cdk/aws-iam:minimizePolicies": true, + "@aws-cdk/core:validateSnapshotRemovalPolicy": true, + "@aws-cdk/aws-codepipeline:crossAccountKeyAliasStackSafeResourceName": true, + "@aws-cdk/aws-s3:createDefaultLoggingPolicy": true, + "@aws-cdk/aws-sns-subscriptions:restrictSqsDescryption": true, + "@aws-cdk/aws-apigateway:disableCloudWatchRole": true, + "@aws-cdk/core:enablePartitionLiterals": true, + "@aws-cdk/aws-events:eventsTargetQueueSameAccount": true, + "@aws-cdk/aws-iam:standardizedServicePrincipals": true, + "@aws-cdk/aws-ecs:disableExplicitDeploymentControllerForCircuitBreaker": true, + "@aws-cdk/aws-iam:importedRoleStackSafeDefaultPolicyName": true, + "@aws-cdk/aws-s3:serverAccessLogsUseBucketPolicy": true, + "@aws-cdk/aws-route53-patters:useCertificate": true, + "@aws-cdk/customresources:installLatestAwsSdkDefault": false, + "@aws-cdk/aws-rds:databaseProxyUniqueResourceName": true, + "@aws-cdk/aws-codedeploy:removeAlarmsFromDeploymentGroup": true, + "@aws-cdk/aws-apigateway:authorizerChangeDeploymentLogicalId": true, + "@aws-cdk/aws-ec2:launchTemplateDefaultUserData": true, + "@aws-cdk/aws-secretsmanager:useAttachedSecretResourcePolicyForSecretTargetAttachments": true, + "@aws-cdk/aws-redshift:columnId": true, + "@aws-cdk/aws-stepfunctions-tasks:enableEmrServicePolicyV2": true, + "@aws-cdk/aws-ec2:restrictDefaultSecurityGroup": true, + "@aws-cdk/aws-apigateway:requestValidatorUniqueId": true, + "@aws-cdk/aws-kms:aliasNameRef": true, + "@aws-cdk/aws-autoscaling:generateLaunchTemplateInsteadOfLaunchConfig": true, + "@aws-cdk/core:includePrefixInUniqueNameGeneration": true, + "@aws-cdk/aws-efs:denyAnonymousAccess": true, + "@aws-cdk/aws-opensearchservice:enableOpensearchMultiAzWithStandby": true, + "@aws-cdk/aws-lambda-nodejs:useLatestRuntimeVersion": true, + "@aws-cdk/aws-efs:mountTargetOrderInsensitiveLogicalId": true, + "@aws-cdk/aws-rds:auroraClusterChangeScopeOfInstanceParameterGroupWithEachParameters": true, + "@aws-cdk/aws-appsync:useArnForSourceApiAssociationIdentifier": true, + "@aws-cdk/aws-rds:preventRenderingDeprecatedCredentials": true + } +} diff --git a/cdk_lib/dpdash-cdk-stack.test.ts b/cdk_lib/dpdash-cdk-stack.test.ts new file mode 100644 index 00000000..81ba59a1 --- /dev/null +++ b/cdk_lib/dpdash-cdk-stack.test.ts @@ -0,0 +1,239 @@ +import { createTemplate } from './test/fixtures' +import { DpdashCdkStack } from './dpdash-cdk-stack' + +describe('DPDashCDKStack', () => { + const OLD_ENV = process.env + const setEnv = (overrides = {}) => { + process.env = { + CDK_DEFAULT_ACCOUNT: '000000000000', + CDK_DEFAULT_REGION: 'us-east-1', + CERT_ARN: 'aws:certarn', + SES_IDENTITY_ARN: 'aws:sesarn', + EMAIL_SENDER: 'noreply@dpdash.example.com', + ADMIN_EMAIL: 'alice@example.com', + BASE_DOMAIN: 'dpdash.example.com', + APP_MEMORY: '2048', + APP_CPU: '1024', + DPDASH_INFRA_STAGING: '1', + ...overrides, + } + } + + beforeEach(() => { + jest.resetModules() + process.env = { ...OLD_ENV } + }) + + afterAll(() => { + process.env = OLD_ENV + }) + + it('throws an error if the CERT_ARN and SES_IDENTITY_ARN are missing', () => { + setEnv({ CERT_ARN: undefined, SES_IDENTITY_ARN: undefined }) + expect(() => createTemplate(DpdashCdkStack)).toThrowError( + 'Missing required environment variables: CERT_ARN, SES_IDENTITY_ARN' + ) + }) + + it('creates a VPC', () => { + setEnv() + const template = createTemplate(DpdashCdkStack) + + template.hasResource('AWS::EC2::VPC', {}) + }) + + it('creates a DocumentDB Cluster', () => { + setEnv() + const template = createTemplate(DpdashCdkStack) + + template.hasResource('AWS::DocDB::DBCluster', {}) + template.hasResource('AWS::DocDB::DBInstance', {}) + }) + + describe('when the DPDASH_INFRA_STAGING flag is set to "1"', () => { + it('creates a public Application Load Balanced Fargate Service with Dev names', () => { + setEnv() + const template = createTemplate(DpdashCdkStack) + + template.hasResource('AWS::ElasticLoadBalancingV2::LoadBalancer', { + Properties: { + Scheme: 'internet-facing', + }, + }) + template.hasResource('AWS::ECS::Cluster', { + Properties: { + ClusterName: 'dpDashDevCluster', + }, + }) + template.hasResource('AWS::ECS::Service', { + Properties: { + ServiceName: 'dpDashDevService', + }, + }) + template.hasResource('AWS::ECS::TaskDefinition', { + Properties: { + Family: 'dpDashDevTaskDefinition', + }, + }) + }) + it('uses the _DEV suffix for secret names', () => { + setEnv() + const template = createTemplate(DpdashCdkStack) + + template.hasResource('AWS::ECS::TaskDefinition', { + Properties: { + ContainerDefinitions: [ + { + Secrets: [ + { + Name: 'MONGODB_PASSWORD', + ValueFrom: { + Ref: 'DocumentDBPassword52497A47', + }, + }, + { + Name: 'SESSION_SECRET', + ValueFrom: { + 'Fn::Join': [ + '', + [ + 'arn:', + { + Ref: 'AWS::Partition', + }, + ':ssm:us-east-1:000000000000:parameter/DPDASH_SESSION_SECRET_DEV', + ], + ], + }, + }, + { + Name: 'IMPORT_API_USERS', + ValueFrom: { + 'Fn::Join': [ + '', + [ + 'arn:', + { + Ref: 'AWS::Partition', + }, + ':ssm:us-east-1:000000000000:parameter/DPDASH_IMPORT_API_USERS_DEV', + ], + ], + }, + }, + { + Name: 'IMPORT_API_KEYS', + ValueFrom: { + 'Fn::Join': [ + '', + [ + 'arn:', + { + Ref: 'AWS::Partition', + }, + ':ssm:us-east-1:000000000000:parameter/DPDASH_IMPORT_API_KEYS_DEV', + ], + ], + }, + }, + ], + }, + ], + }, + }) + }) + }) + describe('when the DPDASH_INFRA_STAGING flag is not set to "1"', () => { + it('creates a public Application Load Balanced Fargate Service with production names', () => { + setEnv({ DPDASH_INFRA_STAGING: undefined }) + const template = createTemplate(DpdashCdkStack) + + template.hasResource('AWS::ElasticLoadBalancingV2::LoadBalancer', { + Properties: { + Scheme: 'internet-facing', + }, + }) + template.hasResource('AWS::ECS::Cluster', { + Properties: { + ClusterName: 'dpDashCluster', + }, + }) + template.hasResource('AWS::ECS::Service', { + Properties: { + ServiceName: 'dpDashService', + }, + }) + template.hasResource('AWS::ECS::TaskDefinition', { + Properties: { + Family: 'dpDashTaskDefinition', + }, + }) + }) + it('does not use the _DEV suffix for secret names', () => { + setEnv({ DPDASH_INFRA_STAGING: undefined }) + const template = createTemplate(DpdashCdkStack) + + template.hasResource('AWS::ECS::TaskDefinition', { + Properties: { + ContainerDefinitions: [ + { + Secrets: [ + { + Name: 'MONGODB_PASSWORD', + ValueFrom: { + Ref: 'DocumentDBPassword52497A47', + }, + }, + { + Name: 'SESSION_SECRET', + ValueFrom: { + 'Fn::Join': [ + '', + [ + 'arn:', + { + Ref: 'AWS::Partition', + }, + ':ssm:us-east-1:000000000000:parameter/DPDASH_SESSION_SECRET', + ], + ], + }, + }, + { + Name: 'IMPORT_API_USERS', + ValueFrom: { + 'Fn::Join': [ + '', + [ + 'arn:', + { + Ref: 'AWS::Partition', + }, + ':ssm:us-east-1:000000000000:parameter/DPDASH_IMPORT_API_USERS', + ], + ], + }, + }, + { + Name: 'IMPORT_API_KEYS', + ValueFrom: { + 'Fn::Join': [ + '', + [ + 'arn:', + { + Ref: 'AWS::Partition', + }, + ':ssm:us-east-1:000000000000:parameter/DPDASH_IMPORT_API_KEYS', + ], + ], + }, + }, + ], + }, + ], + }, + }) + }) + }) +}) diff --git a/cdk_lib/dpdash-cdk-stack.ts b/cdk_lib/dpdash-cdk-stack.ts new file mode 100644 index 00000000..20f0de9d --- /dev/null +++ b/cdk_lib/dpdash-cdk-stack.ts @@ -0,0 +1,222 @@ +import * as cdk from 'aws-cdk-lib' +import * as ec2 from 'aws-cdk-lib/aws-ec2' +import * as ecs from 'aws-cdk-lib/aws-ecs' +import * as ssm from 'aws-cdk-lib/aws-ssm' +import * as ecr from 'aws-cdk-lib/aws-ecr' +import * as iam from 'aws-cdk-lib/aws-iam' +import * as docdb from 'aws-cdk-lib/aws-docdb' +import * as certificate_manager from 'aws-cdk-lib/aws-certificatemanager' +import * as ecs_patterns from 'aws-cdk-lib/aws-ecs-patterns' +import * as secrets_manager from 'aws-cdk-lib/aws-secretsmanager' +import { Construct } from 'constructs' + +export class DpdashCdkStack extends cdk.Stack { + constructor(scope: Construct, id: string, props?: cdk.StackProps) { + super(scope, id, { + env: { + account: process.env.CDK_DEFAULT_ACCOUNT, + region: process.env.CDK_DEFAULT_REGION, + }, + ...props, + }) + const IS_DEV = process.env.DPDASH_INFRA_STAGING === '1' + const APP_NAME = IS_DEV ? 'DpDashDev' : 'DPDash' + + if ( + !process.env.BASE_DOMAIN || + !process.env.ADMIN_EMAIL || + !process.env.EMAIL_SENDER + ) { + throw new Error( + 'Missing required environment variables: BASE_DOMAIN, ADMIN_EMAIL, EMAIL_SENDER' + ) + } + + if (!process.env.CERT_ARN || !process.env.SES_IDENTITY_ARN) { + throw new Error( + 'Missing required environment variables: CERT_ARN, SES_IDENTITY_ARN' + ) + } + + const certArn = process.env.CERT_ARN + const sesIdentityArn = process.env.SES_IDENTITY_ARN + + const secrets = { + sessionSecretDev: ecs.Secret.fromSsmParameter( + ssm.StringParameter.fromSecureStringParameterAttributes( + this, + `${APP_NAME}SessionDevSecret`, + { + parameterName: 'DPDASH_SESSION_SECRET' + (IS_DEV ? '_DEV' : ''), + version: 1, + } + ) + ), + importApiUsersDev: ecs.Secret.fromSsmParameter( + ssm.StringParameter.fromSecureStringParameterAttributes( + this, + `${APP_NAME}ImportApiUsers`, + { + parameterName: 'DPDASH_IMPORT_API_USERS' + (IS_DEV ? '_DEV' : ''), + version: 1, + } + ) + ), + importApiKeysDev: ecs.Secret.fromSsmParameter( + ssm.StringParameter.fromSecureStringParameterAttributes( + this, + `${APP_NAME}ImportApiKeysDev`, + { + parameterName: 'DPDASH_IMPORT_API_KEYS' + (IS_DEV ? '_DEV' : ''), + version: 1, + } + ) + ), + } + const vpc = new ec2.Vpc(this, `${APP_NAME}Vpc`, { + availabilityZones: [`${cdk.Aws.REGION}a`, `${cdk.Aws.REGION}b`], + }) + + const ddbPassSecret = new secrets_manager.Secret( + this, + 'DocumentDB Password', + { + secretName: 'DPDASH_MONGODB_ADMIN_PASSWORD' + (IS_DEV ? '_DEV' : ''), + generateSecretString: { + excludePunctuation: true, + excludeCharacters: "/¥'%:;{}", + }, + } + ) + + const mongoCluster = new docdb.DatabaseCluster( + this, + `${APP_NAME}DatabaseDbCluster`, + { + vpc: vpc, + masterUser: { + username: 'dpdash', + password: ddbPassSecret.secretValue, + }, + instances: 1, + instanceType: ec2.InstanceType.of( + ec2.InstanceClass.MEMORY5, + ec2.InstanceSize.LARGE + ), + vpcSubnets: { + subnetType: ec2.SubnetType.PRIVATE_WITH_EGRESS, + }, + } + ) + + const dpdashRepository = ecr.Repository.fromRepositoryName( + this, + `${APP_NAME}DpdashRepository`, + 'dpdash' + ) + + const appTaskDefinition = new ecs.FargateTaskDefinition( + this, + `${APP_NAME}AppTaskDefinition`, + { + memoryLimitMiB: process.env.DEV_APP_MEMORY + ? Number(process.env.DEV_APP_MEMORY) + : 2048, + cpu: process.env.DEV_APP_CPU ? Number(process.env.DEV_APP_CPU) : 1024, + family: IS_DEV ? 'dpDashDevTaskDefinition' : 'dpDashTaskDefinition', + taskRole: new iam.Role(this, `${APP_NAME}AppTaskRole`, { + assumedBy: new iam.ServicePrincipal('ecs-tasks.amazonaws.com'), + inlinePolicies: { + readDbPassword: new iam.PolicyDocument({ + statements: [ + new iam.PolicyStatement({ + actions: ['secretsmanager:GetSecretValue'], + resources: [ddbPassSecret.secretArn], + }), + ], + }), + sendEmail: new iam.PolicyDocument({ + statements: [ + new iam.PolicyStatement({ + actions: ['ses:SendEmail', 'ses:SendRawEmail'], + resources: [sesIdentityArn], + }), + ], + }), + }, + }), + } + ) + + appTaskDefinition.addContainer(`${APP_NAME}AppContainer`, { + image: ecs.ContainerImage.fromEcrRepository(dpdashRepository, 'latest'), + portMappings: [{ containerPort: 8000 }], + environment: { + MONGODB_HOST: mongoCluster.clusterEndpoint.hostname, + MONGODB_USER: 'dpdash', + ADMIN_EMAIL: process.env.ADMIN_EMAIL, + EMAIL_SENDER: process.env.EMAIL_SENDER, + HOME_URL: `https://${process.env.BASE_DOMAIN}/admin`, + }, + secrets: { + MONGODB_PASSWORD: ecs.Secret.fromSecretsManager(ddbPassSecret), + SESSION_SECRET: secrets.sessionSecretDev, + IMPORT_API_USERS: secrets.importApiUsersDev, + IMPORT_API_KEYS: secrets.importApiKeysDev, + }, + logging: ecs.LogDrivers.awsLogs({ + streamPrefix: `${APP_NAME}AppContainer`, + }), + }) + + const dpDashServiceSg = new ec2.SecurityGroup( + this, + `${APP_NAME}ServiceSG`, + { + vpc: vpc, + allowAllOutbound: true, + } + ) + + const dpDashService = + new ecs_patterns.ApplicationLoadBalancedFargateService( + this, + `${APP_NAME}AppService`, + { + serviceName: IS_DEV ? 'dpDashDevService' : 'dpDashService', + loadBalancerName: IS_DEV ? 'dpDashDevService' : 'dpDashLoadBalancer', + cluster: new ecs.Cluster(this, `${APP_NAME}Cluster`, { + vpc, + clusterName: IS_DEV ? 'dpDashDevCluster' : 'dpDashCluster', + }), + taskDefinition: appTaskDefinition, + securityGroups: [dpDashServiceSg], + assignPublicIp: true, + publicLoadBalancer: true, + redirectHTTP: true, + certificate: certificate_manager.Certificate.fromCertificateArn( + this, + `${APP_NAME}Certificate`, + certArn + ), + taskSubnets: { + subnets: vpc.publicSubnets.concat(vpc.privateSubnets), + }, + } + ) + + const mongoClusterSecurityGroup = ec2.SecurityGroup.fromSecurityGroupId( + this, + `${APP_NAME}MongoSG`, + mongoCluster.securityGroupId, + { + mutable: false, + } + ) + + mongoClusterSecurityGroup.addIngressRule( + ec2.Peer.securityGroupId(dpDashServiceSg.securityGroupId), + ec2.Port.tcp(27017) + ) + } +} diff --git a/cdk_lib/test/fixtures.ts b/cdk_lib/test/fixtures.ts new file mode 100644 index 00000000..2c49c89b --- /dev/null +++ b/cdk_lib/test/fixtures.ts @@ -0,0 +1,16 @@ +import { Template } from 'aws-cdk-lib/assertions' +import * as cdk from 'aws-cdk-lib' +import { Construct } from 'constructs' + +type StackConstructor = new ( + construct: Construct, + id: string +) => T + +export const createTemplate = ( + stackConstructor: StackConstructor +) => { + const app = new cdk.App() + const stack = new stackConstructor(app, 'StackUnderTest') + return Template.fromStack(stack) +} diff --git a/config.schema b/config.schema deleted file mode 100755 index 6f650a61..00000000 --- a/config.schema +++ /dev/null @@ -1,50 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-04/schema#", - "title": "Configuration", - "description": "DPdash configuration file", - "type": "array", - "items": { - "title": "row", - "description": "Configuration file row", - "type": "object", - "properties": { - "category": { - "description": "Category name", - "type": "string", - "pattern": "^[0-9a-zA-Z]+$" - }, - "analysis": { - "description": "Assessment name", - "type": "string", - "pattern": "^[0-9a-zA-Z_]+$" - }, - "variable": { - "description": "Variable description", - "type": "string", - "pattern": "^[0-9a-zA-Z_]+$" - }, - "label": { - "description": "Label", - "type": "string", - "pattern": "^[0-9a-zA-Z_]+$" - }, - "range": { - "description": "Tick marks", - "type": "array", - "uniqueItems": true, - "items": { - "type": "number" - } - }, - "colorbar": { - "description": "Color bar", - "enum": ["YlGn", "RdYlBu", "RdBu"] - }, - "text" : { - "description" : "Show number", - "type" : "boolean" - } - }, - "required": ["category", "analysis", "variable", "label", "range", "text"] - } -} diff --git a/config/networks.json b/config/networks.json new file mode 100644 index 00000000..e1dc462d --- /dev/null +++ b/config/networks.json @@ -0,0 +1,36 @@ +{ + "SITES_BY_NETWORK": { + "PRESCIENT": ["ME", "CG", "JE", "CP", "BM", "ST", "LS", "GW", "SG", "HK"], + "ProNET": [ + "LA", + "OR", + "BI", + "NL", + "NC", + "SD", + "CA", + "YA", + "SF", + "PA", + "SI", + "PI", + "NN", + "IR", + "TE", + "GA", + "WU", + "HA", + "MT", + "KC", + "PV", + "MA", + "CM", + "MU", + "SH", + "SL", + "OH", + "UR", + "CU" + ] + } +} diff --git a/config/vars.json b/config/vars.json new file mode 100644 index 00000000..b8a5b0d3 --- /dev/null +++ b/config/vars.json @@ -0,0 +1,14 @@ +{ + "N_A": "N/A", + "TOTAL_LABEL": "Total", + "TOTALS": "Totals", + "DISALLOWED_STUDIES": ["combined", "files", "ProNET"], + "FILTER_CATEGORIES": { + "chrcrit_part": "Cohort", + "included_excluded": "Included Criteria", + "sex_at_birth": "Sex At Birth", + "sites": "Sites", + "networks": "Networks", + "recruitment_status": "Recruitment Status" + } +} diff --git a/constants/index.js b/constants/index.js new file mode 100644 index 00000000..d7aed4b2 --- /dev/null +++ b/constants/index.js @@ -0,0 +1,62 @@ +import { SITES_BY_NETWORK } from './networks' +import { + ADMIN_TABLE_COLUMN_NUMBER, + ADMIN_TABLE_MAX_WIDTH, + TABLE_ROW_HEIGHT, + baseGridWidth, + baseInnerWidth, + colors, + DRAWER_WIDTH, + presetColors, + MIN_WIDTH, +} from './styles' +import { THEME, borderRadius, fontSize, lineHeight } from './theme' +import { + ADMIN_ROLE, + DATA_URL_PATTERN, + DATE_FORMAT, + DISALLOWED_STUDIES, + EMAIL_REGEX, + FILTER_CATEGORIES, + NETWORKS_FILTER_KEY, + N_A, + NOTIFICATION_DEFAULT, + ROLE_OPTIONS, + SAFE_URL_PATTERN, + SITES_FILTER_KEY, + SORT_DIRECTION, + TOTAL_LABEL, + TOTALS, +} from './vars' + +export { + ADMIN_ROLE, + ADMIN_TABLE_COLUMN_NUMBER, + ADMIN_TABLE_MAX_WIDTH, + baseGridWidth, + baseInnerWidth, + borderRadius, + colors, + DATA_URL_PATTERN, + DATE_FORMAT, + DRAWER_WIDTH, + DISALLOWED_STUDIES, + EMAIL_REGEX, + FILTER_CATEGORIES, + fontSize, + lineHeight, + MIN_WIDTH, + N_A, + NETWORKS_FILTER_KEY, + NOTIFICATION_DEFAULT, + presetColors, + ROLE_OPTIONS, + SAFE_URL_PATTERN, + SITES_BY_NETWORK, + SITES_FILTER_KEY, + SORT_DIRECTION, + TABLE_ROW_HEIGHT, + TOTAL_LABEL, + TOTALS, + THEME, +} diff --git a/constants/networks.js b/constants/networks.js new file mode 100644 index 00000000..174d2c85 --- /dev/null +++ b/constants/networks.js @@ -0,0 +1,3 @@ +import networksConfig from '../config/networks.json' + +export const SITES_BY_NETWORK = networksConfig.SITES_BY_NETWORK diff --git a/constants/styles.js b/constants/styles.js new file mode 100644 index 00000000..0f2ef0e1 --- /dev/null +++ b/constants/styles.js @@ -0,0 +1,45 @@ +export const colors = { + dark_sky_blue: '#97C0CE', + neutral_blue: '#5790BD', + anti_flash_white: '#EDEFFA', + white: '#ffffff', + black: 'rgba(0,0,0,0.7)', + disabled_gray: '#ccc', + configWhite: '#fefefe', + lemon_curry: '#cd9323', + new_car: '#1a53d8', + big_dip_ruby: '#9a2151', + deep_green: '#0d6416', + smokey_topaz: '#8d2808', + gold: '#FFD700', + alloy_orange: '#B95E00', + iguana_green: '#7AAA7B', + deep_saffron: '#F89235', + transparentWhite: 'rgba(255, 255, 255, 0.9)', + columbia_blue: '#c0d9e1', + gray: 'rgba(0, 0, 0, 0.54)', + gray68: '#adadad', + sasquatch: 'rgb(255, 64, 129)', + container_grey: '#f9f9f9', +} + +export const presetColors = [ + colors.dark_sky_blue, + colors.gold, + colors.alloy_orange, + colors.iguana_green, + colors.deep_saffron, + colors.new_car, + colors.lemon_curry, + colors.big_dip_ruby, + colors.deep_green, + colors.smokey_topaz, +] + +export const baseGridWidth = 300 +export const baseInnerWidth = 768 +export const TABLE_ROW_HEIGHT = 48 +export const ADMIN_TABLE_MAX_WIDTH = 960 +export const ADMIN_TABLE_COLUMN_NUMBER = 6 +export const DRAWER_WIDTH = 248 +export const MIN_WIDTH = 620 diff --git a/constants/theme.js b/constants/theme.js new file mode 100644 index 00000000..3b570758 --- /dev/null +++ b/constants/theme.js @@ -0,0 +1,69 @@ +export const THEME = { + palette: { + common: { + white: '#FFFFFF', + black: '#000000DE', + }, + primary: { + light: '#ADDBFF', + main: '#2196F3', + dark: '#096BDE', + }, + secondary: { + main: '#F4EAFF', + dark: '#5F35AE', + }, + text: { + primary: '#272930', + secondary: '#054DA7', + disabled: '#000000de', + }, + blue: { + 100: '#DDF1FF', + }, + grey: { + A100: '#81848F', + A200: '#646872', + A300: '#EEEFF0', + A400: '#0000008f', + A700: '#000000cc', + 100: '#DDDEE0', + 400: '#484848', + }, + black: { + A100: 'rgba(0, 0, 0, 0.87)', + }, + purple: { + 100: '#F4EAFF', + 600: '#5F35AE', + }, + green: { + 500: '#5FD85F', + }, + error: { + main: '#D32F2F', + light: '#FDEDED', + }, + }, +} + +export const fontSize = { + 9: '0.56rem', + 12: '0.75rem', + 14: '0.875rem', + 16: '1rem', + 18: '1.15rem', + 20: '1.20rem', +} + +export const lineHeight = { + 21: '21px', + 28: '28px', + 56: '56.02px', +} + +export const borderRadius = { + 8: '8px', + 24: '24px', + 50: '50%', +} diff --git a/constants/vars.js b/constants/vars.js new file mode 100644 index 00000000..6cfc86c6 --- /dev/null +++ b/constants/vars.js @@ -0,0 +1,38 @@ +import varsConfig from '../config/vars.json' + +export const { + N_A, + TOTAL_LABEL, + TOTALS, + DISALLOWED_STUDIES, + FILTER_CATEGORIES, +} = varsConfig + +export const EMAIL_REGEX = '[a-z0-9._%+-]+@[a-z0-9.-]+.[a-z]{2,4}$' +export const NOTIFICATION_DEFAULT = { + open: false, + message: '', +} +export const ROLE_OPTIONS = [ + { value: 'admin', label: 'System Admins' }, + { value: 'manager', label: 'Study Manager' }, + { value: 'member', label: 'Member' }, +] + +export const SORT_DIRECTION = { + ASC: 'ASC', + DESC: 'DESC', +} + +export const ADMIN_ROLE = 'admin' + +export const SAFE_URL_PATTERN = + /^(?:(?:https?|mailto|ftp|tel|file|sms):|[^&:/?#]*(?:[/?#]|$))/gi + +export const DATA_URL_PATTERN = + /^data:(?:image\/(?:bmp|gif|jpeg|jpg|png|tiff|webp)|video\/(?:mpeg|mp4|ogg|webm)|audio\/(?:mp3|oga|ogg|opus));base64,[a-z0-9+/]+=*$/i + +export const DATE_FORMAT = 'MM/DD/YYYY' + +export const NETWORKS_FILTER_KEY = 'networks' +export const SITES_FILTER_KEY = 'sites' diff --git a/defaultStudyConfig.js b/defaultStudyConfig.js deleted file mode 100644 index cf1f44a1..00000000 --- a/defaultStudyConfig.js +++ /dev/null @@ -1,76 +0,0 @@ -var configs = {}; -configs.colormap = [ - { - category : "daily_survey", - analysis : "timestamp", - variable : "daily_surveyAnswers_hours_since_1", - label : "daily_survey", - range : [0, 24], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text: true - }, - { - category : "daily_survey", - analysis : "questionnaireStat", - variable : "DAILY_1_NUM_UNANSWERED", - label : "unanswered_num", - range : [0, 10], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text: true - }, - { - category : "voice", - analysis : "timestamp", - variable : "daily_voiceRecording_hours_since_1", - label : "daily_voice", - range : [0, 24], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text: true - }, - { - category : "weekly_survey", - analysis : "timestamp", - variable : "weekly_surveyAnswers_hours_since_1", - label : "weekly_survey", - range : [0, 24], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text: true - }, - { - category : "weekly_survey", - analysis : "questionnaireStat", - variable : "WEEKLY_1_NUM_UNANSWERED", - label : "unanswered_num", - range : [0, 10], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text: true - }, - { - category : "actigraphy", - analysis : "Geneactivwrist", - variable : "button", - label : "button", - range : [10, 50], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text: true - }, - { - category : "balancesheet", - analysis : "balancesheetGps", - variable : "gps_count", - label : "gps_file_count", - range : [0, 24], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text : true - }, - { - category : "balancesheet", - analysis : "balancesheetAccel", - variable : "accel_count", - label : "accel_file_count", - range : [0, 24], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text : true - } - ]; -module.exports = configs; diff --git a/defaultUserConfig.js b/defaultUserConfig.js deleted file mode 100644 index ee65b447..00000000 --- a/defaultUserConfig.js +++ /dev/null @@ -1,1949 +0,0 @@ -var userConfig = {}; -userConfig.colormap =[ - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_00_filesize", - label : "callLog_00HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_01_filesize", - label : "callLog_01HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_02_filesize", - label : "callLog_02HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_03_filesize", - label : "callLog_03HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_04_filesize", - label : "callLog_04HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_05_filesize", - label : "callLog_05HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_06_filesize", - label : "callLog_06HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_07_filesize", - label : "callLog_07HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_08_filesize", - label : "callLog_08HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_09_filesize", - label : "callLog_09HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_10_filesize", - label : "callLog_10HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_11_filesize", - label : "callLog_11HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_12_filesize", - label : "callLog_12HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_13_filesize", - label : "callLog_13HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_14_filesize", - label : "callLog_14HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_15_filesize", - label : "callLog_15HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_16_filesize", - label : "callLog_16HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_17_filesize", - label : "callLog_17HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_18_filesize", - label : "callLog_18HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_19_filesize", - label : "callLog_19HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_20_filesize", - label : "callLog_20HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_21_filesize", - label : "callLog_21HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_22_filesize", - label : "callLog_22HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_23_filesize", - label : "callLog_23HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_00_filesize", - label : "textsLog_00HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_01_filesize", - label : "textsLog_01HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_02_filesize", - label : "textsLog_02HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_03_filesize", - label : "textsLog_03HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_04_filesize", - label : "textsLog_04HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_05_filesize", - label : "textsLog_05HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : 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["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_10_filesize", - label : "textsLog_10HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_11_filesize", - label : "textsLog_11HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_12_filesize", - label : "textsLog_12HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_13_filesize", - label : "textsLog_13HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_14_filesize", - label : "textsLog_14HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_15_filesize", - label : "textsLog_15HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_16_filesize", - label : "textsLog_16HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_17_filesize", - label : "textsLog_17HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_18_filesize", - label : "textsLog_18HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_19_filesize", - label : "textsLog_19HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_20_filesize", - label : "textsLog_20HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_21_filesize", - label : "textsLog_21HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_22_filesize", - label : "textsLog_22HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_23_filesize", - label 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false - }, - { - category : "voiceRecording", - analysis : "balancesheetVoicerecording", - variable : "voiceRecording_hour_23_filesize", - label : "voiceRecording_23HR", - range : [249566, 648577], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_00_filesize", - label : "powerState_00HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_01_filesize", - label : "powerState_01HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_02_filesize", - label : "powerState_02HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_03_filesize", - label : "powerState_03HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_04_filesize", - label : "powerState_04HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_05_filesize", - label : "powerState_05HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_06_filesize", - label : "powerState_06HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_07_filesize", - label : "powerState_07HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_08_filesize", - label : "powerState_08HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_09_filesize", - label : "powerState_09HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_10_filesize", - label : "powerState_10HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_11_filesize", - label : "powerState_11HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : 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- category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_19_filesize", - label : "powerState_19HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_20_filesize", - label : "powerState_20HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_21_filesize", - label : "powerState_21HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_22_filesize", - label : "powerState_22HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_23_filesize", - label : "powerState_23HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_00_filesize", - label : "gps_00HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_01_filesize", - label : "gps_01HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_02_filesize", - label : "gps_02HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_03_filesize", - label : "gps_03HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_04_filesize", - label : "gps_04HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_05_filesize", - label : "gps_05HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_06_filesize", - label : "gps_06HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_07_filesize", - label : "gps_07HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_08_filesize", - label : "gps_08HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_09_filesize", - label : "gps_09HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_10_filesize", - label : "gps_10HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_11_filesize", - label : "gps_11HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_12_filesize", - label : "gps_12HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_13_filesize", - label : "gps_13HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_14_filesize", - label : "gps_14HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_15_filesize", - label : "gps_15HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_16_filesize", - label : "gps_16HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_17_filesize", - label : "gps_17HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_18_filesize", - label : "gps_18HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_19_filesize", - label : "gps_19HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_20_filesize", - label : "gps_20HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_21_filesize", - label : "gps_21HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_22_filesize", - label : "gps_22HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_23_filesize", - label : "gps_23HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_00_filesize", - label : "accel_00HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_01_filesize", - label : "accel_01HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_02_filesize", - label : "accel_02HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_03_filesize", - label : "accel_03HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_04_filesize", - label : "accel_04HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_05_filesize", - label : "accel_05HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_06_filesize", - label : "accel_06HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_07_filesize", - label : "accel_07HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_08_filesize", - label : "accel_08HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_09_filesize", - label : "accel_09HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_10_filesize", - label : "accel_10HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_11_filesize", - label : "accel_11HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_12_filesize", - label : "accel_12HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_13_filesize", - label : "accel_13HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_14_filesize", - label : "accel_14HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_15_filesize", - label : "accel_15HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_16_filesize", - label : "accel_16HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_17_filesize", - label : "accel_17HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_18_filesize", - label : "accel_18HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_19_filesize", - label : "accel_19HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_20_filesize", - label : "accel_20HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_21_filesize", - label : "accel_21HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_22_filesize", - label : "accel_22HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_23_filesize", - label : "accel_23HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_00_filesize", - label : "wifiLog_00HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_01_filesize", - label : "wifiLog_01HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_02_filesize", - label : "wifiLog_02HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_03_filesize", - label : "wifiLog_03HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_04_filesize", - label : "wifiLog_04HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_05_filesize", - label : "wifiLog_05HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_06_filesize", - label : "wifiLog_06HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_07_filesize", - label : "wifiLog_07HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_08_filesize", - label : "wifiLog_08HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_09_filesize", - label : "wifiLog_09HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_10_filesize", - label : "wifiLog_10HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_11_filesize", - label : "wifiLog_11HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_12_filesize", - label : "wifiLog_12HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_13_filesize", - label : "wifiLog_13HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_14_filesize", - label : "wifiLog_14HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_15_filesize", - label : "wifiLog_15HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_16_filesize", - label : "wifiLog_16HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_17_filesize", - label : "wifiLog_17HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_18_filesize", - label : "wifiLog_18HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_19_filesize", - label : "wifiLog_19HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_20_filesize", - label : "wifiLog_20HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_21_filesize", - label : "wifiLog_21HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_22_filesize", - label : "wifiLog_22HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_23_filesize", - label : "wifiLog_23HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_00_filesize", - label : "bluetoothLog_00HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_01_filesize", - label : "bluetoothLog_01HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_02_filesize", - label : "bluetoothLog_02HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_03_filesize", - label : "bluetoothLog_03HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_04_filesize", - label : "bluetoothLog_04HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_05_filesize", - label : "bluetoothLog_05HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_06_filesize", - label : "bluetoothLog_06HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_07_filesize", - label : "bluetoothLog_07HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_08_filesize", - label : "bluetoothLog_08HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_09_filesize", - label : "bluetoothLog_09HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_10_filesize", - label : "bluetoothLog_10HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_11_filesize", - label : "bluetoothLog_11HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_12_filesize", - label : "bluetoothLog_12HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_13_filesize", - label : "bluetoothLog_13HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_14_filesize", - label : "bluetoothLog_14HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_15_filesize", - label : "bluetoothLog_15HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_16_filesize", - label : "bluetoothLog_16HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_17_filesize", - label : "bluetoothLog_17HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_18_filesize", - label : "bluetoothLog_18HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_19_filesize", - label : "bluetoothLog_19HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_20_filesize", - label : "bluetoothLog_20HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_21_filesize", - label : "bluetoothLog_21HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_22_filesize", - label : "bluetoothLog_22HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_23_filesize", - label : "bluetoothLog_23HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - } -]; -module.exports = userConfig; - diff --git a/dev.rabbitmq.Dockerfile b/dev.rabbitmq.Dockerfile new file mode 100644 index 00000000..85f1e4e5 --- /dev/null +++ b/dev.rabbitmq.Dockerfile @@ -0,0 +1,18 @@ +FROM rabbitmq + +ADD rabbitmq-init.sh /rabbitmq-init.sh +RUN chmod +x /rabbitmq-init.sh + +ARG RABBIT_USERNAME=something +ENV RABBIT_USERNAME=${RABBIT_USERNAME} + +ARG RABBIT_PASSWORD=something +ENV RABBIT_PASSWORD=${RABBIT_PASSWORD} + +ENV RABBITMQ_PID_FILE=/var/lib/rabbitmq/mnesia/rabbitmq + + +EXPOSE 5671 5672 + +# Define default command +CMD ["/rabbitmq-init.sh"] diff --git 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Dockerfile + context: . + depends_on: + - mongodb + env_file: .env + networks: + - app-tier + # Expose port for Nginx Proxy Manager to access + ports: + - 8000:8000 + environment: + - HOME_URL=https://dpdash.local + + mongodb: + image: mongo:5 + restart: unless-stopped + environment: + MONGO_INITDB_ROOT_USERNAME: ${MONGODB_ADMIN_USER} + MONGO_INITDB_ROOT_PASSWORD: ${MONGODB_ADMIN_PASSWORD} + ports: + - 27017:27017 + expose: + - 27017 + volumes: + - mongodb:/data/db + networks: + - app-tier + + # SMTP testing server (optional) + mailcatcher: + image: sj26/mailcatcher + restart: unless-stopped + ports: + - 1080:1080 # Web UI + - 1025:1025 # SMTP port + command: --smtp-ip=0.0.0.0 --smtp-port=1025 --http-ip=0.0.0.0 --http-port=1080 + networks: + - app-tier + profiles: + - smtp + +networks: + default: + driver: bridge + app-tier: + +volumes: + mongodb: + name: dpdash-mongodb + npm_data: + npm_letsencrypt: diff --git a/docs/Makefile b/docs/Makefile deleted file mode 100644 index 69fe55ec..00000000 --- a/docs/Makefile +++ /dev/null @@ -1,19 +0,0 @@ -# Minimal makefile for Sphinx documentation -# - -# You can set these variables from the command line. -SPHINXOPTS = -SPHINXBUILD = sphinx-build -SOURCEDIR = source -BUILDDIR = build - -# Put it first so that "make" without argument is like "make help". -help: - @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) - -.PHONY: help Makefile - -# Catch-all target: route all unknown targets to Sphinx using the new -# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). -%: Makefile - @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) \ No newline at end of file diff --git a/docs/source/building.rst b/docs/source/building.rst deleted file mode 100644 index 727b6b9f..00000000 --- a/docs/source/building.rst +++ /dev/null @@ -1,90 +0,0 @@ -Building a DPdash image -======================= -.. note:: - If you intend to build DPdash on an operating system other than Linux, - head over to the `Vagrant section <#vagrant>`_. - -This guide will show you how to build a DPdash image from the ground up. - -Building --------- -First, clone the DPdash repository and change into the ``singularity`` directory :: - - git clone https://github.com/harvard-nrg/dpdash.git - cd dpdash/singularity - -Now, run the ``singularity build`` command. This requires ``sudo`` privilege :: - - sudo /usr/local/bin/singularity build dpdash.sif Singularity - -.. attention:: - While DPdash on GitHub is under development, you may be prompted for your - GitHub username and password during this build process. - -Starting and stopping ---------------------- -Once you have your ``dpdash.sif`` image, you'll want to head over to the -`quick start guide `_ to learn how to initialize, start, -and stop DPdash. - -Vagrant -------- -Building DPdash as a `Singularity `_ container -requires Linux. `Vagrant `_ offers a fast and -reproducible way to stand up a Linux virtual machine. If you take this route, -you can use the following ``Vagrantfile`` to install Singularity on CentOS and -forward port ``8000`` :: - - Vagrant.configure("2") do |config| - config.vm.network "forwarded_port", guest: 8000, host: 8000 - config.vm.box = "bento/centos-7.6" - config.vm.provider "virtualbox" do |vb| - vb.memory = "1024" - end - config.vm.provision "shell", inline: <<-SHELL - yum -y install libgpgme11-devel libseccomp-devel pkgconfig \ - openssl-devel libuuid-devel gcc git patch vim autoconf \ - automake libtool squashfs-tools - cd /tmp - if [ ! -f '/usr/local/bin/singularity' ]; then - # install go - export VERSION=1.12 OS=linux ARCH=amd64 - wget -q https://dl.google.com/go/go$VERSION.$OS-$ARCH.tar.gz - sudo tar -C /usr/local -xzf go$VERSION.$OS-$ARCH.tar.gz - rm go$VERSION.$OS-$ARCH.tar.gz - echo 'export PATH=/usr/local/go/bin:$PATH' >> ~/.bashrc - source ~/.bashrc - # install singularity - export VERSION=3.3.0 - wget -q https://github.com/sylabs/singularity/releases/download/v${VERSION}/singularity-${VERSION}.tar.gz - tar -xzf singularity-${VERSION}.tar.gz - cd singularity - ./mconfig - make -C builddir - sudo make -C builddir install - fi - SHELL - end - -vagrant proxy-conf -~~~~~~~~~~~~~~~~~~ -If you're going to build this Vagrant box behind a web proxy, you're going to -need the ``vagrant-proxyconf`` plugin :: - - vagrant plugin install vagrant-proxyconf - -and you will have to add the following ``config.proxy`` directives to the -``Vagrantfile`` :: - - config.proxy.http = "..." - config.proxy.https = "..." - -cookies -~~~~~~~ -For good reason, `Express.js `_ will **not** send cookies over -unencrypted HTTP. If you're just kicking the tires on DPdash and you don't care about -sending cookies over HTTP, you must change the cookie security policy within the DPdash -configuration file :: - - config.session.cookie.secure = false; - diff --git a/docs/source/conf.py b/docs/source/conf.py deleted file mode 100644 index eebafd08..00000000 --- a/docs/source/conf.py +++ /dev/null @@ -1,173 +0,0 @@ -# -*- coding: utf-8 -*- -# -# Configuration file for the Sphinx documentation builder. -# -# This file does only contain a selection of the most common options. For a -# full list see the documentation: -# http://www.sphinx-doc.org/en/master/config - -# -- Path setup -------------------------------------------------------------- - -# If extensions (or modules to document with autodoc) are in another directory, -# add these directories to sys.path here. If the directory is relative to the -# documentation root, use os.path.abspath to make it absolute, like shown here. -# -# import os -# import sys -# sys.path.insert(0, os.path.abspath('.')) - - -# -- Project information ----------------------------------------------------- - -project = u'DPdash' -copyright = u'2019, Neuroinformatics Research Group' -author = u'Neuroinformatics Research Group' - -# The short X.Y version -version = u'' -# The full version, including alpha/beta/rc tags -release = u'' - - -# -- General configuration --------------------------------------------------- - -# If your documentation needs a minimal Sphinx version, state it here. -# -# needs_sphinx = '1.0' - -# Add any Sphinx extension module names here, as strings. They can be -# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom -# ones. -extensions = [ -] - -# Add any paths that contain templates here, relative to this directory. -templates_path = ['ntemplates'] - -# The suffix(es) of source filenames. -# You can specify multiple suffix as a list of string: -# -# source_suffix = ['.rst', '.md'] -source_suffix = '.rst' - -# The master toctree document. -master_doc = 'index' - -# The language for content autogenerated by Sphinx. Refer to documentation -# for a list of supported languages. -# -# This is also used if you do content translation via gettext catalogs. -# Usually you set "language" from the command line for these cases. -language = None - -# List of patterns, relative to source directory, that match files and -# directories to ignore when looking for source files. -# This pattern also affects html_static_path and html_extra_path. -exclude_patterns = [] - -# The name of the Pygments (syntax highlighting) style to use. -pygments_style = None - - -# -- Options for HTML output ------------------------------------------------- - -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of builtin themes. -# -html_theme = 'alabaster' - -# Theme options are theme-specific and customize the look and feel of a theme -# further. For a list of options available for each theme, see the -# documentation. -# -# html_theme_options = {} - -# Add any paths that contain custom static files (such as style sheets) here, -# relative to this directory. They are copied after the builtin static files, -# so a file named "default.css" will overwrite the builtin "default.css". -html_static_path = ['nstatic'] - -# Custom sidebar templates, must be a dictionary that maps document names -# to template names. -# -# The default sidebars (for documents that don't match any pattern) are -# defined by theme itself. Builtin themes are using these templates by -# default: ``['localtoc.html', 'relations.html', 'sourcelink.html', -# 'searchbox.html']``. -# -# html_sidebars = {} - - -# -- Options for HTMLHelp output --------------------------------------------- - -# Output file base name for HTML help builder. -htmlhelp_basename = 'DPdashdoc' - - -# -- Options for LaTeX output ------------------------------------------------ - -latex_elements = { - # The paper size ('letterpaper' or 'a4paper'). - # - # 'papersize': 'letterpaper', - - # The font size ('10pt', '11pt' or '12pt'). - # - # 'pointsize': '10pt', - - # Additional stuff for the LaTeX preamble. - # - # 'preamble': '', - - # Latex figure (float) alignment - # - # 'figure_align': 'htbp', -} - -# Grouping the document tree into LaTeX files. List of tuples -# (source start file, target name, title, -# author, documentclass [howto, manual, or own class]). -latex_documents = [ - (master_doc, 'DPdash.tex', u'DPdash Documentation', - u'Neuroinformatics Research Group', 'manual'), -] - - -# -- Options for manual page output ------------------------------------------ - -# One entry per manual page. List of tuples -# (source start file, name, description, authors, manual section). -man_pages = [ - (master_doc, 'dpdash', u'DPdash Documentation', - [author], 1) -] - - -# -- Options for Texinfo output ---------------------------------------------- - -# Grouping the document tree into Texinfo files. List of tuples -# (source start file, target name, title, author, -# dir menu entry, description, category) -texinfo_documents = [ - (master_doc, 'DPdash', u'DPdash Documentation', - author, 'DPdash', 'One line description of project.', - 'Miscellaneous'), -] - - -# -- Options for Epub output ------------------------------------------------- - -# Bibliographic Dublin Core info. -epub_title = project - -# The unique identifier of the text. This can be a ISBN number -# or the project homepage. -# -# epub_identifier = '' - -# A unique identification for the text. -# -# epub_uid = '' - -# A list of files that should not be packed into the epub file. -epub_exclude_files = ['search.html'] diff --git a/docs/source/images/reverse_proxy.png b/docs/source/images/reverse_proxy.png deleted file mode 100644 index 7c6745a4..00000000 Binary files a/docs/source/images/reverse_proxy.png and /dev/null differ diff --git a/docs/source/index.rst b/docs/source/index.rst deleted file mode 100644 index bd09b976..00000000 --- a/docs/source/index.rst +++ /dev/null @@ -1,19 +0,0 @@ -DPdash: Digital Phenotyping Dashboard -===================================== - -Guide -^^^^^ - -.. toctree:: - :maxdepth: 2 - - quick_start - building - tips_tricks - -Indices and tables -================== - -* :ref:`genindex` -* :ref:`modindex` -* :ref:`search` diff --git a/docs/source/quick_start.rst b/docs/source/quick_start.rst deleted file mode 100644 index 05cf47e0..00000000 --- a/docs/source/quick_start.rst +++ /dev/null @@ -1,200 +0,0 @@ -Quick Start Guide -================= -This quick start guide will show you how to download, initialize, and run DPdash -as a standalone Singularity container instance. - -.. note:: - Instead of downloading a DPdash image, you can build one yourself. To do that, - please follow the `building tutorial `_. - -Install Singularity -------------------- -.. attention:: - Installing Singularity will require administrative privilege. - -Follow the official Singularity `installation guide `_. -We highly recommend using Singularity version 3.0 or greater. - -Download the application image ------------------------------- -Submit a request for the latest DPdash ``Singularity Image Format`` image by -sending an email to :: - - dpdash@neuroinfo.org - -Or you can create the DPdash image yourself by following the -`building tutorial `_. - -Create data persistence directories ------------------------------------ -.. warning:: - When you stop a container, all data saved within the container will be - lost unless it is saved to a bind mount. - -DPdash requires two directories for successful operation, a `data directory <#data-directory>`_ -to store files that should be scanned and imported into the DPdash database, and a -`state directory <#state-directory>`_ to persist the DPdash database files, log -files, SSL certificates, and configuration files. - -data directory -~~~~~~~~~~~~~~ -The DPdash importer process will periodically crawl and import any DPdash -formatted text files that live under the ``data`` directory. DPdash administrators -should create a dedicated directory for these files. This directory will be shared -into the DPdash container at runtime :: - - mkdir data - -This directory can exist anywhere on the host filesystem. Administrators are -free to create any non-DPdash files or subdirectories under this directory, -however it should be understood that every filename will be inspected by the -DPdash importer process unless the file is under a directory named ``raw``. - -To keep your files neatly organized, we recommend creating a ``PHOENIX`` style -directory tree. Generally, there should be a directory for each study and within -each study directory additional subdirectories for each subject :: - - data - └── STUDY_A - └── SUBJECT_01 - -.. note:: - Remember that all file names under the ``data`` directory will be inspected - by the DPdash file importer unless the file is stored under a subdirectory - named ``raw``. - -metadata files -~~~~~~~~~~~~~~ -Within the ``data`` directory, DPdash administrators must create metadata files -for each study. The metadata file name should contain the study name followed by -``_metadata.csv``. - -The following is the recommended metadata CSV columns and format requirements:: - - Active,Study,Subject ID,Consent Date - 0,STUDY_A,SUBJECT_01,2019-01-01 - -Here are the formatting requirements for each column - -+--------------+------------------------------+--------------+------------+ -| Column | Description | Format | Example | -+==============+==============================+==============+============+ -| Active | Indicates participant status | Boolean | 1 | -+--------------+------------------------------+--------------+------------+ -| Study | Study ID | Alphanumeric | STUDY_A | -+--------------+------------------------------+--------------+------------+ -| Subject ID | Subject ID | Alphanumeric | SUBJECT_01 | -+--------------+------------------------------+--------------+------------+ -| Consent Date | Consent date | ``%Y-%m-%d`` | 2019-01-01 | -+--------------+------------------------------+--------------+------------+ - -The DPdash importer process will read these metadata files and use the -``Consent Date`` field to add relative date-specific information to each -dashboard page. - -state directory -~~~~~~~~~~~~~~~ -DPdash administrators must create a dedicated directory to persist the DPdash -state. DPdash state includes any database files, log files, configuration files, -and internally used SSL certificates. This directory will be shared into the -DPdash container at runtime :: - - mkdir state - -This directory can exist anywhere on the host filesystem. - -Initialize DPdash ------------------ -Before you can start DPdash, there are several steps that must be performed -by you, **within your environment**. These steps include initializing the -database, initializing the queuing system, generating SSL certificates, -generating any service-related usernames, passwords, and so on. The DPdash -repository includes an initialization script to streamline this task. - -clone the repository -~~~~~~~~~~~~~~~~~~~~ -.. note:: - If you haven’t downloaded or generated a DPdash application image, please - follow the `instructions above <#download-the-application-image>`_. - -Clone the DPdash repository, change into the ``singularity`` directory, and -copy (or move) your ``dpdash.sif`` image file into that directory :: - - git clone https://github.com/harvard-nrg/dpdash.git - cd dpdash/singularity - cp /path/to/dpdash.sif . - -run the initialization script -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -The initialization script will configure the database, queuing system, generate -any necessary SSL certificates, any necessary service-related usernames, passwords, -and render the templated configuration files (exhale). - -.. attention:: - You cannot resume DPdash initialization from a failed state. If you encounter - any issue with this step and need to re-run ``init.sh``, be sure to delete the - entire contents of the `state directory <#state-directory>`_. - -To begin the initialization process, execute the ``init.sh`` script. In the command -below, be sure to replace ``${data}`` with the absolute path to your -`data directory <#data-directory>`_ and ``${state}`` with the absolute path to your -`state directory <#state-directory>`_ :: - - bash init.sh ${data} ${state} - -Starting --------- -To start DPdash, simply start an instance of the ``dpdash.sif``. In the command -below, be sure to replace ``${data}`` with the absolute path to your -`data directory <#data-directory>`_ and ``${state}`` with the absolute path to your -`state directory <#state-directory>`_ :: - - singularity instance start \ - -B ${state}:/data \ - –B ${data}:${data} \ - dpdash.sif \ - dpdash - -.. note:: - The last argument to ``singularity instance start`` is the name you will use - to refer to the container instance e.g., ``instance://dpash``. - -Stopping --------- -To stop DPdash, execute the ``quit.sh`` script within the container. This will stop -any databases and other services gracefully :: - - singularity exec instance://dpdash /data/scripts/quit.sh - -Now you can safely stop the Singularity instance :: - - singularity instance stop dpdash - -Setting up a reverse proxy --------------------------- -.. attention:: - Installing NGINX, copying SSL certificates under /etc, and binding to ports - below 1024 all require superuser privileges. - -By default, DPdash listens over HTTP on port ``8000`` on ``0.0.0.0``. These details -are configurable within the DPdash configuration file. It is highly recommended that -you change the network interface to the loopback ``127.0.0.1`` and use a reverse proxy. - -Your reverse proxy should accept incoming requests over HTTPS (port ``443``), on an -external network interface and forward traffic to DPdash running on ``127.0.0.1:8000`` -as illustrated below - -.. image:: images/reverse_proxy.png - :width: 900 - -We recommend that you use NGINX for your reverse proxy. To install NGINX, refer -to the `official documentation `_. -To configure NGINX as a reverse proxy, again refer to the -`documentation `_. - -.. note:: - Most web browsers will present a security warning if your application does - not provide a valid SSL certificate, or if your application provides one that - is not signed by a recognized Certificate Authority. Contact your system - administrator for a properly signed SSL certificate. - diff --git a/docs/source/tips_tricks.rst b/docs/source/tips_tricks.rst deleted file mode 100644 index 419446e0..00000000 --- a/docs/source/tips_tricks.rst +++ /dev/null @@ -1,23 +0,0 @@ -Tips and tricks -=============== -The following tips and tricks will help you troubleshoot and hack on -DPdash. - -Binding the source code ------------------------ -The ``dpdash.sif`` is a read-only Singularity image file. During the build -process, DPdash is written to a directory within the directory :: - - /sw/apps/dpdash - -If you feel the need to modify the DPdash code, you either have to build the -container in ``sandbox`` mode, or use ``-B|--bind`` to bind a local directory -containing the DPdash application source into the container :: - - singularity instance start \ - -B ${state}:/data \ - -B ${data}:${data} \ - -B /path/to/dpdash/src:/sw/apps/dpdash \ - dpdash.sif - dpdash - diff --git a/dpdash.service b/dpdash.service new file mode 100644 index 00000000..79aa65ea --- /dev/null +++ b/dpdash.service @@ -0,0 +1,19 @@ +[Unit] +Description=Gnar company developed DPdash (unstable) at https://predict-dp.mgb.org/ +After=network-online.target docker.service +Wants=network-online.target docker.service + +[Service] +User=root +Type=oneshot +RemainAfterExit=yes +WorkingDirectory=/opt/dpdash +ExecStart=docker compose up -d +ExecStop=docker compose down +KillMode=process +TimeoutSec=60 + +[Install] +WantedBy=multi-user.target + + diff --git a/jest-mongodb-config.js b/jest-mongodb-config.js new file mode 100644 index 00000000..47f858f5 --- /dev/null +++ b/jest-mongodb-config.js @@ -0,0 +1,10 @@ +module.exports = { + mongodbMemoryServerOptions: { + binary: { + skipMD5: true, + }, + instance: {}, + autoStart: false, + }, + mongoURLEnvName: 'MONGODB_URI', +} diff --git a/jestCdkConfig.js b/jestCdkConfig.js new file mode 100644 index 00000000..650c513d --- /dev/null +++ b/jestCdkConfig.js @@ -0,0 +1,3 @@ +module.exports = { + preset: 'ts-jest', +} diff --git a/jestServerConfig.js b/jestServerConfig.js new file mode 100644 index 00000000..f146ce07 --- /dev/null +++ b/jestServerConfig.js @@ -0,0 +1,4 @@ +module.exports = { + preset: '@shelf/jest-mongodb', + setupFilesAfterEnv: ['/jestServerSetup.js'], +} diff --git a/jestServerSetup.js b/jestServerSetup.js new file mode 100644 index 00000000..dc48daa8 --- /dev/null +++ b/jestServerSetup.js @@ -0,0 +1,9 @@ +import { MongoClient } from 'mongodb' + +beforeAll(async () => { + global.MONGO_INSTANCE = await MongoClient.connect(global.__MONGO_URI__) +}) + +afterAll(async () => { + await global.MONGO_INSTANCE.close() +}) diff --git a/jestSetup.js b/jestSetup.js new file mode 100644 index 00000000..74a1abe7 --- /dev/null +++ b/jestSetup.js @@ -0,0 +1,19 @@ +import '@testing-library/jest-dom' + +// Mock the SVGElement and CanvasElement methods that we use which are not +// implemented by JSDOM +Object.defineProperty(global.SVGElement.prototype, 'getBBox', { + writable: true, + value: jest.fn().mockReturnValue({ + x: 0, + y: 0, + }), +}) + +Object.defineProperty(global.HTMLCanvasElement.prototype, 'getContext', { + value: jest.fn(), +}) + +Object.defineProperty(global.HTMLFormElement.prototype, 'requestSubmit', { + value: jest.fn(), +}) diff --git a/jestUIConfig.js b/jestUIConfig.js new file mode 100644 index 00000000..dd1b03a4 --- /dev/null +++ b/jestUIConfig.js @@ -0,0 +1,6 @@ +module.exports = { + setupFilesAfterEnv: ['/jestSetup.js'], + moduleNameMapper: { + '\\.(css|less|scss|sass)$': 'identity-obj-proxy', + }, +} diff --git a/make-cert.sh b/make-cert.sh new file mode 100644 index 00000000..8d4746ee --- /dev/null +++ b/make-cert.sh @@ -0,0 +1,2 @@ +mkdir certs +openssl req -x509 -nodes -days 365 -newkey rsa:2048 -keyout ./certs/selfsigned.key -out ./certs/selfsigned.crt -subj "/CN=[dpdash.local]" diff --git a/nginx.conf b/nginx.conf new file mode 100644 index 00000000..b7b4a49b --- /dev/null +++ b/nginx.conf @@ -0,0 +1,15 @@ +events {} +http { + server { + listen 80; + listen 443 ssl http2; + server_name app.example.com; + ssl_certificate /etc/ssl/certs/nginx/default.crt; + ssl_certificate_key /etc/ssl/certs/nginx/default.key; + location / { + proxy_pass http://node-app:8000; + } + access_log off; + error_log /var/log/nginx/error.log error; + } +} diff --git a/package-lock.json b/package-lock.json index fa59f2f4..7e197245 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,6872 +1,27668 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all && ./node_modules/pm2/bin/pm2 delete all", - "logs": "./node_modules/pm2/bin/pm2 logs", - "restart": "NODE_ENV=production ./node_modules/pm2/bin/pm2 stop all && ./node_modules/pm2/bin/pm2 delete all && ./node_modules/pm2/bin/pm2 start bin/www", - "node": "DEBUG=* node ./bin/www" + "build": "NODE_ENV=production webpack", + "build:watch": "webpack --watch", + "transpile": "npx babel ./server --out-dir dist && cp -r ./server/mailer/templates ./dist/mailer/templates", + "dev": "NODE_ENV=development concurrently \"npm run serve:watch\" \"npm run build:watch\"", + "start": "NODE_ENV=production start dist/bin/www.js", + "server": "nodemon --exec babel-node server/bin/www.js", + "serve:watch": "nodemon -r dotenv/config --exec babel-node server/bin/www.js --watch \"./server\" dotenv_config_path=./.env.development", + "lint": "eslint .", + "lint:fix": "eslint . --fix", + "format": "prettier . --check", + "format:fix": "prettier . --write", + "node": "DEBUG=* node ./dist/bin/www.js", + "test": "concurrently \"npm run test:ui\" \"npm run test:server\"", + "test:ui": "jest --env=jsdom --config=jestUIConfig.js views/", + "test:server": "jest --config=jestServerConfig.js server/", + "test:cdk": "jest --config=jestCdkConfig.js cdk_lib/", + "bootstrap": "cdk bootstrap", + "deploy": "cdk deploy" + }, + "jest": { + "testPathIgnorePatterns": [ + "/node_modules/" + ] }, "babel": { - "env": { - "production": { - "plugins": [ - "transform-react-constant-elements", - "transform-react-inline-elements", - "transform-react-remove-prop-types" - ] - } - } + "presets": [ + "@babel/preset-env", + "@babel/preset-react" + ], + "plugins": [ + "@babel/plugin-transform-runtime", + "@babel/plugin-transform-react-constant-elements", + "@babel/plugin-transform-react-inline-elements" + ] }, "dependencies": { - "@babel/preset-react": "^7.0.0", - "@babel/preset-stage-0": "^7.0.0", - "@material-ui/core": "^3.3.0", - "@material-ui/icons": "^3.0.1", - "amqplib": "^0.5.2", - "babel-preset-stage-0": 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deleted file mode 100755 index 4004448b..00000000 --- a/public/css/graph.css +++ /dev/null @@ -1,96 +0,0 @@ -/* d3 css start **/ -svg *::selection { - background: transparent; -} - -svg *::-moz-selection { - background: transparent; -} - -svg *::-webkit-selection { - background: transparent; -} -rect.selection { - stroke: #333; - stroke-dasharray: 4px; - stroke-opacity: 0.5; - fill: transparent; -} - -rect.cell-selected { - stroke: rgb(51,102,153); - stroke-width: 0.5px; -} - -rect.cell-hover { - opacity: 0.5; - stroke: #C0C0C0; - stroke-width:0.3px; -} - -text.text-selected { - fill: #000; -} - -text.text-highlight { - fill: #ff0000; -} -text.text-hover { - fill: #ff0000; -} -.xAxisLinearTop > path { - display: none; -} -.xAxisLinearBottom > path { - display: none; -} -.yAxisLinear > path { - display: none; -} -.tick > line { - display: none; -} -text.EmptyDates { - fill: #ffffff !important; -} -text.DatesText{ - fill: #000000; -} -/** d3 css end */ -.Matrix { - overflow:hidden; -} -.graph { - overflow:hidden; -} -.floatingButton { - right: 20px; - bottom: 10px; - z-index: 999; - position: fixed; -} -.floatingButton > a { - float: right; - bottom: 5px; - margin-bottom: 10px; -} -.floatingButton .mdl-button { - background: rgba(231, 231, 231, 0.8); -} -.resyncSpinner { - top: 3px; -} -.hide { - display: none; -} -.invisibleText { - opacity: 0; -} -html, body { - height: 98vh; - margin: 0; -} -#graph { - height: 98vh; - overflow: hidden; -} diff --git a/public/css/login.css b/public/css/login.css deleted file mode 100644 index 65c69a24..00000000 --- a/public/css/login.css +++ /dev/null @@ -1,24 +0,0 @@ -body { - height: 98vh; -} -#main { - width: inherit; - height: inherit; - - display: flex; - display: -webkit-flex; - display: -moz-flex; - display: -o-flex; - - justify-content: center; - -webkit-justify-content: center; - -moz-justify-content: center; - -o-justify-content: center; - - align-items: center; - -webkit-align-items: center; - -moz-align-items: center; - -o-align-items: center; - -} - diff --git a/public/css/main.css b/public/css/main.css deleted file mode 100644 index b426655d..00000000 --- a/public/css/main.css +++ /dev/null @@ -1,7 +0,0 @@ -html, body { - height: 98vh; - margin: 0; -} -#main { - height: 98vh; -} diff --git a/public/css/react-virtualized.css b/public/css/react-virtualized.css deleted file mode 100644 index df1c3bce..00000000 --- a/public/css/react-virtualized.css +++ /dev/null @@ -1,151 +0,0 @@ -html, body { - width: 100%; - height: 100%; - overflow: hidden; - font-family: 'Roboto'; -} -/* Collection default theme */ - -.ReactVirtualized__Collection { -} - -.ReactVirtualized__Collection__innerScrollContainer { -} - -/* Grid default theme */ - -.ReactVirtualized__Grid { -} - -.ReactVirtualized__Grid__innerScrollContainer { -} - -/* Table default theme */ - -.ReactVirtualized__Table { -} - -.ReactVirtualized__Table__Grid { -} - -.ReactVirtualized__Table__headerRow { - font-weight: 700; - text-transform: uppercase; - display: -webkit-flex; - display: -moz-box; - display: -ms-flexbox; - display: flex; - -webkit-flex-direction: row; - -moz-box-orient: horizontal; - -moz-box-direction: normal; - -ms-flex-direction: row; - flex-direction: row; - -webkit-align-items: center; - -moz-box-align: center; - -ms-flex-align: center; - align-items: center; -} -.ReactVirtualized__Table__row { - display: -webkit-flex; - display: -moz-box; - display: -ms-flexbox; - display: flex; - -webkit-flex-direction: row; - -moz-box-orient: horizontal; - -moz-box-direction: normal; - -ms-flex-direction: row; - flex-direction: row; - -webkit-align-items: center; - -moz-box-align: center; - -ms-flex-align: center; - align-items: center; -} - -.ReactVirtualized__Table__headerTruncatedText { - display: inline-block; - max-width: 100%; - white-space: nowrap; - text-overflow: ellipsis; - overflow: hidden; -} - -.ReactVirtualized__Table__headerColumn, -.ReactVirtualized__Table__rowColumn { - margin-right: 10px; - min-width: 0px; -} -.ReactVirtualized__Table__rowColumn { - text-overflow: ellipsis; - white-space: nowrap; -} - -.ReactVirtualized__Table__headerColumn:first-of-type, -.ReactVirtualized__Table__rowColumn:first-of-type { - margin-left: 10px; -} -.ReactVirtualized__Table__sortableHeaderColumn { - cursor: pointer; -} - -.ReactVirtualized__Table__sortableHeaderIconContainer { - display: -webkit-flex; - display: -moz-box; - display: -ms-flexbox; - display: flex; - -webkit-align-items: center; - -moz-box-align: center; - -ms-flex-align: center; - align-items: center; -} -.ReactVirtualized__Table__sortableHeaderIcon { - -webkit-flex: 0 0 24px; - -moz-box-flex: 0; - -ms-flex: 0 0 24px; - flex: 0 0 24px; - height: 1em; - width: 1em; - fill: currentColor; -} - -/* List default theme */ - -.ReactVirtualized__List { -} -.Table { - width: 100%; - margin-top: 15px; -} -.oddRow { - background-color: #fafafa; -} -.headerRow { - border-bottom: 1px solid #e0e0e0; -} -.headerColumn { - text-transform: none; -} -.exampleColumn { - white-space: nowrap; - overflow: hidden; - text-overflow: ellipsis; -} - -.checkboxLabel { - margin-left: .5rem; -} -.checkboxLabel:first-of-type { - margin-left: 0; -} - -.noRows { - position: absolute; - top: 0; - bottom: 0; - left: 0; - right: 0; - display: flex; - align-items: center; - justify-content: center; - font-size: 1em; - color: #bdbdbd; -} diff --git a/public/css/register.css b/public/css/register.css deleted file mode 100644 index 65c69a24..00000000 --- a/public/css/register.css +++ /dev/null @@ -1,24 +0,0 @@ -body { - height: 98vh; -} -#main { - width: inherit; - height: inherit; - - display: flex; - display: -webkit-flex; - display: -moz-flex; - display: -o-flex; - - justify-content: center; - -webkit-justify-content: center; - -moz-justify-content: center; - -o-justify-content: center; - - align-items: center; - -webkit-align-items: center; - -moz-align-items: center; - -o-align-items: center; - -} - diff --git a/public/css/roboto.css b/public/css/roboto.css deleted file mode 100755 index 6506d0c8..00000000 --- a/public/css/roboto.css +++ /dev/null @@ -1,69 +0,0 @@ -@font-face { - font-family: 'Roboto'; - src: url('./fonts/Roboto-Regular-webfont.woff') format('woff'); - font-weight: normal; - font-style: normal; -} - -@font-face { - font-family: 'Roboto'; - src: url('./fonts/Roboto-Italic-webfont.woff') format('woff'); - font-weight: normal; - font-style: italic; -} - -@font-face { - font-family: 'Roboto'; - src: url('./fonts/Roboto-Bold-webfont.woff') format('woff'); - font-weight: bold; - font-style: normal; -} - -@font-face { - font-family: 'Roboto'; - src: url('./fonts/Roboto-BoldItalic-webfont.woff') format('woff'); - font-weight: bold; - font-style: italic; -} - -@font-face { - font-family: 'Roboto'; - src: url('./fonts/Roboto-Thin-webfont.woff') format('woff'); - font-weight: 200; - font-style: normal; -} - -@font-face { - font-family: 'Roboto'; - src: url('./fonts/Roboto-ThinItalic-webfont.woff') format('woff'); - font-weight: 200; - font-style: italic; -} - -@font-face { - font-family: 'Roboto'; - src: url('./fonts/Roboto-Light-webfont.woff') format('woff'); - font-weight: 100; - font-style: normal; -} - -@font-face { - font-family: 'Roboto'; - src: url('./fonts/Roboto-LightItalic-webfont.woff') format('woff'); - font-weight: 100; - font-style: italic; -} - -@font-face { - font-family: 'Roboto'; - src: url('./fonts/Roboto-Medium-webfont.woff') format('woff'); - font-weight: 300; - font-style: normal; -} - -@font-face { - font-family: 'Roboto'; - src: url('./fonts/Roboto-MediumItalic-webfont.woff') format('woff'); - font-weight: 300; - font-style: italic; -} \ No newline at end of file diff --git a/public/css/study.css b/public/css/study.css deleted file mode 100644 index 2798fe73..00000000 --- a/public/css/study.css +++ /dev/null @@ -1,69 +0,0 @@ -/* d3 css start **/ -svg *::selection { - background: transparent; -} - -svg *::-moz-selection { - background: transparent; -} - -svg *::-webkit-selection { - background: transparent; -} -rect.selection { - stroke: #333; - stroke-dasharray: 4px; - stroke-opacity: 0.5; - fill: transparent; -} - -rect.cell-selected { - stroke: rgb(51,102,153); - stroke-width: 0.5px; -} - -rect.cell-hover { - opacity: 0.5; - stroke: #C0C0C0; - stroke-width:0.3px; -} - -text.text-selected { - fill: #000; -} - -text.text-highlight { - fill: #ff0000; -} -text.text-hover { - fill: #ff0000; -} -.xAxisLinearTop > path { - display: none; -} -.xAxisLinearBottom > path { - display: none; -} -.yAxisLinear > path { - display: none; -} -.tick > line { - display: none; -} -text.EmptyDates { - fill: #ffffff !important; -} -text.DatesText{ - fill: #000000; -} -/** d3 css end */ -html, body { - height: 100%; - padding: 0px; - margin: 0px; -} -#main, #main>div{ - height: 100%; - padding: 0px; - margin: 0px; -} diff --git a/public/css/style.css b/public/css/style.css deleted file mode 100644 index 9453385b..00000000 --- a/public/css/style.css +++ /dev/null @@ -1,8 +0,0 @@ -body { - padding: 50px; - font: 14px "Lucida Grande", Helvetica, Arial, sans-serif; -} - -a { - color: #00B7FF; -} diff --git a/public/img/dpdash.png b/public/img/dpdash.png old mode 100755 new mode 100644 diff --git a/public/img/favicon.ico b/public/img/favicon.ico new file mode 100644 index 00000000..252b1547 Binary files /dev/null and b/public/img/favicon.ico differ diff --git a/public/index.html b/public/index.html new file mode 100644 index 00000000..26938978 --- /dev/null +++ b/public/index.html @@ -0,0 +1,14 @@ + + + + + + + DPdash + + + + +
+ + diff --git a/routes/index.js b/routes/index.js deleted file mode 100644 index 371fcdce..00000000 --- a/routes/index.js +++ /dev/null @@ -1,1191 +0,0 @@ -var express = require('express'); -var router = express.Router(); -var MongoDB = require('mongodb'); -var MongoClient = MongoDB.MongoClient; -var ObjectID = MongoDB.ObjectID; -var path = require('path'); -var fs = require('fs'); -var d3 = require('d3'); -var multer = require('multer'); -var colorbrewer = require('colorbrewer'); -var validate = require('jsonschema').validate; -var csv = require('csvtojson'); -var amqp = require('amqplib/callback_api'); -var co = require('co'); -var crypto = require('crypto'); -var uuidV4 = require('uuid/v4'); -var passport = require('passport'); - -var configPath = process.env.DPDASH_CONFIG || '../config'; -var config = require(configPath); -var uploadPath = process.env.DPDASH_UPLOADS || '../uploads'; -var upload = multer({ dest: uploadPath }).single('file'); -var defaultStudyConfigPath = process.env.DPDASH_DASHBOARD_CONFIG_DEFAULT_STUDY || '../defaultStudyConfig'; -var defaultStudyConfig = require(defaultStudyConfigPath); - -var mongoURI = 'mongodb://' + config.database.mongo.username + ':'; -mongoURI = mongoURI + config.database.mongo.password + '@' + config.database.mongo.host; -mongoURI = mongoURI + ':' + config.database.mongo.port + '/' + config.database.mongo.authSource; - -var mongoClient; -var mongoApp; -var mongoData; -MongoClient.connect(mongoURI, config.database.mongo.server, function(err, client) { - if (err) { - console.error(err.message); - console.log('Could not connect to the database.'); - process.exit(); - } - mongoClient = client; - mongoApp = mongoClient.db(config.database.mongo.appDB); - mongoData = mongoClient.db(config.database.mongo.dataDB); -}); - -function checkMongo() { - if (!mongoClient.isConnected()) { - MongoClient.connect(mongoURI, config.database.mongo.server, function(err, client) { - if (err) { - console.error(err.message); - console.log('Could not connect to the database.'); - process.exit(); - } - mongoClient = client; - mongoApp = mongoClient.db(config.database.mongo.appDB); - mongoData = mongoClient.db(config.database.mongo.dataDB); - }); - } -} - -var amqpAddress = 'amqps://' + config.rabbitmq.username + ':' + config.rabbitmq.password + '@' + config.rabbitmq.host + ':' + config.rabbitmq.port; -var rabbimq_conn = null; -amqp.connect(amqpAddress, config.rabbitmq.opts, function(err, conn) { - if(err) console.log(err); - rabbitmq_conn = conn; -}); - -var loginPage = require('../views/Login.template.js'); -var registerPage = require('../views/Register.template.js'); -var resetPage = require('../views/Resetpw.template.js'); -var mainPage = require('../views/Main.template.js'); -var userPage = require('../views/Account.template.js'); -var configPage = require('../views/Config.template.js'); -var editConfig = require('../views/EditConfig.template.js'); -var adminPage = require('../views/Admin.template.js'); -var studyPage = require('../views/Study.template.js'); -var deepdivePage = require('../views/DeepDive.template.js'); -var graphPage = require('../views/Graph.template.js'); - -//User authentication middleware -function ensureAuthenticated(req, res, next) { - if(!req.isAuthenticated()) { - return res.redirect('/logout'); - } - checkMongo(); - mongoApp.collection('users').findOne( - { uid: req.user }, - { _id : 0, access: 1, blocked: 1, role: 1}, - function(err, data) { - if (err) { - console.log(err); - return res.redirect('/logout?e=forbidden'); - } else if (!data || Object.keys(data).length === 0) { - return res.redirect('/logout?e=forbidden'); - } else if (('role' in data) && data['role'] === 'admin') { - return next(); - } else if (('blocked' in data) && data['blocked'] == true) { - return res.redirect('/logout?e=forbidden'); - } else if (!('access' in data) || data.access.length == 0) { - return res.redirect('/logout?e=unauthorized'); - } else { - return next(); - } - }); -} -//Admin privilege checking middleware -function ensureAdmin(req, res, next) { - if(!req.isAuthenticated()) { - return res.redirect('/logout'); - } - checkMongo(); - mongoApp.collection('users').findOne( - { uid: req.user, role: 'admin' }, - { _id: 0, uid: 1} - , function(err, data) { - if (err) { - console.log(err); - return res.redirect('/?e=forbidden'); - } else if (!data || Object.keys(data).length === 0) { - return res.redirect('/?e=forbidden'); - } else { - return next(); - } - }); -} - -//Check if the information requested is for the user -function ensureUser(req, res, next) { - if(!req.isAuthenticated()) { - return res.redirect('/logout?e=forbidden'); - } else if(req.params.uid !== req.user) { - return res.redirect('/?e=forbidden'); - } else { - return next(); - } -} -//Check user privilege for the study -function ensurePermission(req, res, next) { - if(!req.isAuthenticated()) { - return res.redirect('/logout'); - } - checkMongo(); - mongoApp.collection('users').findOne( - { uid: req.user }, - { _id : 0, access: 1, blocked: 1, role: 1}, - function(err, data) { - if (err) { - console.log(err); - return res.redirect('/?e=forbidden'); - } else if (!data || Object.keys(data).length === 0) { - return res.redirect('/?e=forbidden'); - } else if (('role' in data) && data['role'] === 'admin') { - return next(); - } else if (('blocked' in data) && data['blocked'] == true) { - return res.redirect('/logout?e=forbidden'); - } else if (!('access' in data) || data.access.length == 0) { - return res.redirect('/logout?e=unauthorized'); - } else if(data.access.indexOf(req.params.study) < 0) { - return res.redirect('/?e=forbidden'); - } else { - return next(); - } - }); -} -//Home -router.get('/', ensureAuthenticated, function(req, res) { - return res.send(mainPage(req.user, req.session.display_name, req.session.role, req.session.icon)); -}); - -//User Home -router.route('/u') - .get(ensureAuthenticated, function(req, res) { - return res.status(200).send(userPage(req.user, req.session.display_name, req.session.icon, req.session.mail, req.session.role)); - }); - -//User Configuration -router.route('/u/configure') - .get(ensureAuthenticated, function(req, res) { - if(req.query.s && req.query.id) { - return res.status(200).send(editConfig(req.user, req.query.s, req.query.id)); - } else if (req.query.s) { - return res.status(200).send(editConfig(req.user, req.query.s, null)); - } else if (req.query.u) { - if(req.query.u == 'invalid') { - var message = 'Invalid configuration format.'; - } else if (req.query.u == 'error') { - var message = 'Error occurred while uploading the configuration.'; - } else if (req.query.u == 'success') { - var message = 'Configuratoin upload successful!'; - } else { - var message = req.query.u; - } - return res.status(200).send(configPage(req.user, req.session.display_name, req.session.icon, req.session.mail, req.session.role, message)); - } else { - return res.status(200).send(configPage(req.user, req.session.display_name, req.session.icon, req.session.mail, req.session.role, '')); - } - }); - -//Admin Home -router.route('/admin') - .get(ensureAdmin, function(req, res) { - return res.status(200).send(adminPage(req.user, req.session.display_name, req.session.role, req.session.icon)); - }); - -//Login -router.route('/login') - .get(function(req, res, next) { - if(req.query.e) { - if(req.query.e === 'forbidden') { - return res.send(loginPage('Not authorized. Please contact the admin')); - } else if (req.query.e === 'unauthorized') { - var message = 'Please contact the admin to get access to your projects'; - return res.send(loginPage(message)); - } else if (req.query.e === 'NA') { - var message = 'This application uses LDAP authentication. Please contact the admin.'; - return res.send(loginPage(message)); - } else if (req.query.e === 'resetpw') { - var message = 'Your password has been changed. Please log in'; - return res.send(loginPage(message)); - } else { - return res.send(loginPage(req.query.e)); - } - } else { - return res.send(loginPage('')); - } - }) - .post(function(req, res, next) { - passport.authenticate('local-login', {session: true}, function(err, user) { - if(err) { - return res.redirect('/login?e=' + err); - } - if(!user) { - if(config.auth.useLDAP) { - return require('../utils/passport/ldap')(req, res, next); - } else { - return res.redirect('/login'); - } - } - if (user.ldap) { - if(config.auth.useLDAP) { - return require('../utils/passport/ldap')(req, res, next); - } else { - return res.redirect('/login'); - } - } else { - return require('../utils/passport/local-login')(req, res, next, user); - } - })(req, res, next); - }); - -//register -router.route('/signup') - .get(function(req, res, next) { - if(config.auth.useLDAP) { - return res.redirect('/login?e=NA'); - } else if(req.query.e === 'existingUser') { - return res.send(registerPage('The username already exists. Please choose another.')); - } else { - return res.send(registerPage('')); - } - }) - .post(function(req, res, next) { - if(config.auth.useLDAP) { - return res.redirect('/login'); - } else { - return require('../utils/passport/local-signup')(req, res, next); - } - }); - -//Logout page -router.get('/logout', function(req, res){ - req.session.destroy(); - req.logout(); - if(req.query.e) { - return res.redirect('/login?e=' + req.query.e); - } else { - return res.redirect('/login'); - } -}); - -//deepdive page -router.get('/api/v1/studies/:study/subjects/:subject/deepdive/:day', ensurePermission, function(req, res) { - checkMongo(); - mongoData.collection('toc').find( - { - study : req.params.study, - subject: req.params.subject, - assessment : { - $regex: /^Deepdive/ - } - } - ).toArray(function(err, docs) { - if (err) { - console.log(err); - return res.status(502).send([]); - } else if (docs.length == 0) { - return res.status(404).send([]); - } else { - co(function*() { - var dataPiece = []; - for (var doc = 0; doc < docs.length; doc++) { - var data = yield mongoData.collection(docs[doc].collection).find({ - day: parseInt(req.params.day) - }).toArray(); - Array.prototype.push.apply(dataPiece, data); - } - return res.status(201).send(dataPiece); - }); - } - }); -}); - -router.get('/deepdive/:study/:subject/:day', ensurePermission, function(req, res) { - return res.send(deepdivePage(req.params.study, req.params.subject, req.params.day)); -}); - -//Dashboard page -router.get('/dashboard/:study/:subject', ensurePermission, function(req, res) { - checkMongo(); - mongoApp.collection('users').findOne( - { uid: req.user }, - { _id: 0, preferences: 1 } - , function(err, doc) { - if (err) { - console.log(err); - return res.status(502).send({}); - } else if (!doc || Object.keys(doc).length === 0) { - return res.status(404).send({}); - } else { - if('config' in doc['preferences']) { - mongoApp.collection('configs').findOne( - { readers: req.user, _id: new ObjectID(doc['preferences']['config'])} - , function(err, data) { - var keys = data ? Object.keys(data['config']) : []; - if (err) { - console.log(err); - return res.status(502).send({}); - } else if (!data || keys.length === 0) { - mongoApp.collection('configs').findOne( - { readers: req.user} - , function(err, data) { - var keys = data ? Object.keys(data['config']) : []; - if (err) { - console.log(err); - return res.status(502).send({}); - } else if (!data || keys.length === 0) { - return res.status(404).send({}); - } else { - var default_config = data['config'][keys[0]]; - var dashboardState = { - "matrixData" : [], - "yAxisData" : [], - "assessmentNames" : [], - "matrixConfig" : default_config, - "subject" : req.params.subject, - "project" : req.params.study, - "consentDate" : '', - "updated" : '' - }; - co(function*() { - var metadocReference = yield mongoData.collection('metadata').findOne({ - study: req.params.study, - role: 'metadata' - }); - if(metadocReference != null) { - dashboardState.updated = metadocReference.updated; - if('collection' in metadocReference) { - var metadoc = yield mongoData.collection(metadocReference.collection).find({}).toArray(); - if(metadoc != []) { - for (item in metadoc) { - if (metadoc[item]['Subject ID'] === req.params.subject && metadoc[item]['Consent']) { - dashboardState.consentDate = metadoc[item]['Consent']; - } - } - } - } - } - for(var configItem in default_config) { - if(default_config[configItem].variable === '' || default_config[configItem].analysis === '') { - continue; - } - dashboardState.yAxisData.push(default_config[configItem].label); - dashboardState.assessmentNames.push(default_config[configItem].analysis); - var assessment = default_config[configItem].analysis; - var collectionName = req.params.study + req.params.subject + assessment; - var encrypted = crypto.createHash('sha256').update(collectionName).digest('hex'); - var varName = default_config[configItem].variable; - var escapedVarName = encodeURIComponent(varName).replace(/\./g, '%2E'); - var query = '[{ $project: {_id: 0, day: 1, "' + escapedVarName + '" : "$' + varName + '"}}]'; - var data = yield mongoData.collection(encrypted.toString()).aggregate(eval(query)).toArray(); - var queryForStat = '[{ $match : {"' + escapedVarName + '" : { $ne: "" }}},{ $group : { _id: "$null", min: {$min : "$' + escapedVarName + '"}, max: {$max : "$' + escapedVarName + '"}, mean: {$avg : "$' + escapedVarName + '"}}}]'; - var stat = yield mongoData.collection(encrypted.toString()).aggregate(eval(queryForStat)).toArray(); - var dataPiece = {}; - dataPiece.text = default_config[configItem].text; - dataPiece.analysis = default_config[configItem].analysis; - dataPiece.category = default_config[configItem].category; - dataPiece.variable = default_config[configItem].variable; - dataPiece.label = default_config[configItem].label; - dataPiece.range = default_config[configItem].range; - dataPiece.color = default_config[configItem].color; - dataPiece.data = (data.length >= 1 && data[0].hasOwnProperty(default_config[configItem].variable)) ? data : []; - dataPiece.stat = (stat.length >= 1) ? stat : []; - dashboardState.matrixData.push(dataPiece); - } - return res.send(graphPage(req.params.subject, req.params.study, req.user, req.session.display_name, req.session.icon, req.session.mail, req.session.toc, dashboardState, default_config, req.session.celery_tasks, req.session.role)); - }); - } - }); - } else { - var default_config = data['config'][keys[0]]; - var dashboardState = { - "matrixData" : [], - "yAxisData" : [], - "assessmentNames" : [], - "matrixConfig" : default_config, - "subject" : req.params.subject, - "project" : req.params.study, - "consentDate" : '', - "updated" : '' - }; - co(function*() { - var metadocReference = yield mongoData.collection('metadata').findOne({ - study: req.params.study, - role: 'metadata' - }); - if(metadocReference != null) { - dashboardState.updated = metadocReference.updated; - if('collection' in metadocReference) { - var metadoc = yield mongoData.collection(metadocReference.collection).find({}).toArray(); - if(metadoc != []) { - for (item in metadoc) { - if (metadoc[item]['Subject ID'] === req.params.subject && metadoc[item]['Consent']) { - dashboardState.consentDate = metadoc[item]['Consent']; - } - } - } - } - } - for(var configItem in default_config) { - if(default_config[configItem].variable === '' || default_config[configItem].analysis === '') { - continue; - } - dashboardState.yAxisData.push(default_config[configItem].label); - dashboardState.assessmentNames.push(default_config[configItem].analysis); - var assessment = default_config[configItem].analysis; - var collectionName = req.params.study + req.params.subject + assessment; - var encrypted = crypto.createHash('sha256').update(collectionName).digest('hex'); - var varName = default_config[configItem].variable; - var escapedVarName = encodeURIComponent(varName).replace(/\./g, '%2E'); - var query = '[{ $project: {_id: 0, day: 1, "' + escapedVarName + '" : "$' + varName + '"}}]'; - var data = yield mongoData.collection(encrypted.toString()).aggregate(eval(query)).toArray(); - var queryForStat = '[{ $match : {"' + escapedVarName + '" : { $ne: "" }}},{ $group : { _id: "$null", min: {$min : "$' + escapedVarName + '"}, max: {$max : "$' + escapedVarName + '"}, mean: {$avg : "$' + escapedVarName + '"}}}]'; - var stat = yield mongoData.collection(encrypted.toString()).aggregate(eval(queryForStat)).toArray(); - var dataPiece = {}; - dataPiece.text = default_config[configItem].text; - dataPiece.analysis = default_config[configItem].analysis; - dataPiece.category = default_config[configItem].category; - dataPiece.variable = default_config[configItem].variable; - dataPiece.label = default_config[configItem].label; - dataPiece.range = default_config[configItem].range; - dataPiece.color = default_config[configItem].color; - dataPiece.data = (data.length >= 1 && data[0].hasOwnProperty(default_config[configItem].variable)) ? data : []; - dataPiece.stat = (stat.length >= 1) ? stat : []; - dashboardState.matrixData.push(dataPiece); - } - return res.send(graphPage(req.params.subject, req.params.study, req.user, req.session.display_name, req.session.icon, req.session.mail, req.session.toc, dashboardState, default_config, req.session.celery_tasks, req.session.role)); - }); - } - }); - } else { - mongoApp.collection('configs').findOne( - { readers: req.user} - , function(err, data) { - var keys = data ? Object.keys(data['config']) : []; - if (err) { - console.log(err); - return res.status(502).send({}); - } else if (!data || keys.length === 0) { - return res.status(404).send({}); - } else { - var default_config = data['config'][keys[0]]; - var dashboardState = { - "matrixData" : [], - "yAxisData" : [], - "assessmentNames" : [], - "matrixConfig" : default_config, - "subject" : req.params.subject, - "project" : req.params.study, - "consentDate" : '', - "updated" : '' - }; - co(function*() { - var metadocReference = yield mongoData.collection('metadata').findOne({ - study: req.params.study, - role: 'metadata' - }); - if(metadocReference != null) { - dashboardState.updated = metadocReference.updated; - if('collection' in metadocReference) { - var metadoc = yield mongoData.collection(metadocReference.collection).find({}).toArray(); - if(metadoc != []) { - for (item in metadoc) { - if (metadoc[item]['Subject ID'] === req.params.subject && metadoc[item]['Consent']) { - dashboardState.consentDate = metadoc[item]['Consent']; - } - } - } - } - } - for(var configItem in default_config) { - if(default_config[configItem].variable === '' || default_config[configItem].analysis === '') { - continue; - } - dashboardState.yAxisData.push(default_config[configItem].label); - dashboardState.assessmentNames.push(default_config[configItem].analysis); - var assessment = default_config[configItem].analysis; - var collectionName = req.params.study + req.params.subject + assessment; - var encrypted = crypto.createHash('sha256').update(collectionName).digest('hex'); - var varName = default_config[configItem].variable; - var escapedVarName = encodeURIComponent(varName).replace(/\./g, '%2E'); - var query = '[{ $project: {_id: 0, day: 1, "' + escapedVarName + '" : "$' + varName + '"}}]'; - var data = yield mongoData.collection(encrypted.toString()).aggregate(eval(query)).toArray(); - var queryForStat = '[{ $match : {"' + escapedVarName + '" : { $ne: "" }}},{ $group : { _id: "$null", min: {$min : "$' + escapedVarName + '"}, max: {$max : "$' + escapedVarName + '"}, mean: {$avg : "$' + escapedVarName + '"}}}]'; - var stat = yield mongoData.collection(encrypted.toString()).aggregate(eval(queryForStat)).toArray(); - var dataPiece = {}; - dataPiece.text = default_config[configItem].text; - dataPiece.analysis = default_config[configItem].analysis; - dataPiece.category = default_config[configItem].category; - dataPiece.variable = default_config[configItem].variable; - dataPiece.label = default_config[configItem].label; - dataPiece.range = default_config[configItem].range; - dataPiece.color = default_config[configItem].color; - dataPiece.data = (data.length >= 1 && data[0].hasOwnProperty(default_config[configItem].variable)) ? data : []; - dataPiece.stat = (stat.length >= 1) ? stat : []; - dashboardState.matrixData.push(dataPiece); - } - return res.send(graphPage(req.params.subject, req.params.study, req.user, req.session.display_name, req.session.icon, req.session.mail, req.session.toc, dashboardState, default_config, req.session.celery_tasks, req.session.role)); - }); - } - }); - } - } - }); -}); - -router.route('/resetpw') - .get(function(req, res) { - if(config.auth.useLDAP) { - return res.redirect('/login?e=NA'); - } else if (req.query.e) { - if(req.query.e === 'unmatched') { - var message = 'The passwords do not match. Please try again.'; - return res.send(resetPage(message)); - } else if(req.query.e === 'db') { - var message = 'There was an error. Please contact the admin.'; - return res.send(resetPage(message)); - } else if(req.query.e === 'nouser') { - var message = 'The username or reset key did not match. Please try again.'; - return res.send(resetPage(message)); - } else { - return res.send(resetPage(req.query.e)); - } - } else { - return res.send(resetPage('')); - } - }) - .post(function(req, res) { - if(req.body.password !== req.body.confirmpw) { - return res.redirect('/resetpw?e=unmatched'); - } else { - var hashedPW = require('../utils/crypto/hash')(req.body.password, 'aes-256-ctr', 'encrypt', config.app.secret); - - checkMongo(); - mongoApp.collection('users').findOneAndUpdate( - { uid: req.body.username, reset_key : req.body.reset_key }, - { $set: { password : hashedPW, reset_key : '', force_reset_pw: false } }, - { returnOriginal: false }, - function(err, doc) { - if(err) { - console.log(err); - return res.redirect('/resetpw?e=db'); - } else if (!doc || doc['value'] === null){ - return res.redirect('/resetpw?e=nouser'); - } else { - return res.redirect('/login?e=resetpw'); - } - }); - } - }); - -router.route('/resync/:study/:subject') - .post(ensureAuthenticated, function(req, res) { - var rootdir = config.app.rootDir; - var syncdir = rootdir + '/' + req.params.study + '/' + req.params.subject + '/'; - rabbitmq_conn.createChannel(function(err, ch) { - if(err) { - console.log(err); - try { - amqp.connect(amqpAddress, config.rabbitmq.opts, function(err, conn) { - rabbitmq_conn = conn; - }); - } catch(err) { - console.log(err); - process.exit(1); - } - } - ch.assertQueue(config.rabbitmq.consumerQueue, {durable: false}, function(err, q) { - var correlationId = uuidV4(); - publisher(rabbitmq_conn, ch, correlationId, [syncdir, rootdir, '', '', config.database.mongo.username, config.database.mongo.password, config.database.mongo.host, config.database.mongo.port, config.database.mongo.authSource, config.database.mongo.dataDB], q.queue); - return res.status(201).send({correlationId : correlationId}); - }); - }); - }); - -function publisher(conn, ch, correlationId, args, replyTo) { - var message = {}; - message.id = correlationId; - message.task = 'import'; - message.args = args; - message.kwargs = {}; - message.retries = 1; - - ch.sendToQueue(config.rabbitmq.publisherQueue, - new Buffer(JSON.stringify(message)), - { correlationId: correlationId, contentType: 'application/json', replyTo: replyTo }); - - setTimeout(function() { - ch.close(); - }, 500); -} - -router.get('/dashboard/:study', ensurePermission, function(req, res) { - co(function*() { - checkMongo(); - var configs_heatmap = defaultStudyConfig['colormap']; - var metadocReference = yield mongoData.collection('metadata').findOne({ - study: req.params.study, - role: 'metadata' - }); - if (!metadocReference) { - return res.status(500).send("Please contact the administrator."); - } - var metadoc = yield mongoData.collection(metadocReference['collection']).find({}).toArray(); - var dashboardData = []; - for (item in metadoc) { - var dashboardState = { - "matrixData" : [], - "project" : metadoc[item]['Study'], - "subject" : metadoc[item]['Subject ID'], - "consentDate" : metadoc[item]['Consent'] - }; - - for (var configItem in configs_heatmap) { - var assessment = configs_heatmap[configItem].analysis; - var collectionName = metadoc[item]['Study'] + metadoc[item]['Subject ID'] + assessment; - var encrypted = crypto.createHash('sha256').update(collectionName).digest('hex'); - - var varName = configs_heatmap[configItem].variable; - var escapedVarName = encodeURIComponent(varName).replace(/\./g, '%2E'); - var query = '[{ $project: {_id: 0, day: 1, "' + escapedVarName + '" : "$' + varName + '"}}]'; - var data = yield mongoData.collection(encrypted.toString()).aggregate(eval(query)).toArray(); - var queryForStat = '[{ $match : {"' + escapedVarName + '" : { $ne: "" }}},{ $group : { _id: "$null", min: {$min : "$' + escapedVarName + '"}, max: {$max : "$' + escapedVarName + '"}, mean: {$avg : "$' + escapedVarName + '"}}}]'; - var stat = yield mongoData.collection(encrypted.toString()).aggregate(eval(queryForStat)).toArray(); - var dataPiece = {}; - dataPiece.text = configs_heatmap[configItem].text; - dataPiece.analysis = configs_heatmap[configItem].analysis; - dataPiece.category = configs_heatmap[configItem].category; - dataPiece.variable = configs_heatmap[configItem].variable; - dataPiece.label = configs_heatmap[configItem].label; - dataPiece.range = configs_heatmap[configItem].range; - dataPiece.color = configs_heatmap[configItem].color; - dataPiece.data = (data.length >= 1 && data[0].hasOwnProperty(configs_heatmap[configItem].variable)) ? data : []; - dataPiece.stat = []; - dashboardState.matrixData.push(dataPiece); - } - dashboardData.push(dashboardState); - } - return res.send(studyPage(req.params.study, req.user, req.session.display_name, - req.session.icon, req.session.role, req.session.toc, req.session.celery_tasks, dashboardData, defaultStudyConfig)); - }); -}); - -router.route('/api/v1/studies') - .get(function(req, res) { - checkMongo(); - mongoApp.collection('users').findOne( - { uid : req.user }, - { _id : 0, access: 1} - , function(err, data) { - if (err) { - console.log(err); - return res.status(502).send([]); - } else if (!data || Object.keys(data).length == 0) { - return res.status(404).send([]); - } else if (!('access' in data) || data.access.length == 0) { - return res.status(404).send([]); - } else { - return res.status(200).send(data.access.sort()); - } - }); - }); - -router.get('/api/v1/search/studies', ensureAuthenticated, function(req, res) { - checkMongo(); - mongoData.collection('toc').distinct('study' - , function(err, studies) { - if(err) { - console.log(err); - return res.status(502).send([]); - } else if (!studies || studies.length == 0) { - return res.status(404).send([]); - } else { - return res.status(200).send(studies); - } - }); -}); - -router.get('/api/v1/subjects', function(req, res) { - checkMongo(); - mongoData.collection('metadata').aggregate([ - { $match : { study : { $in : JSON.parse(req.query.q) }}}, - { $addFields: { numOfSubjects: { $size: { "$ifNull": [ "$subjects", [] ] }}}}, - { $sort: { study: 1 }} - ]).toArray(function(err, subjects) { - if(err) { - console.log(err); - return res.status(502).send([]); - } else if(!subjects) { - return res.status(502).send([]); - } else { - return res.status(200).send(subjects); - } - }); -}); - -router.get('/api/v1/users', ensureAdmin, function(req, res) { - checkMongo(); - mongoApp.collection('users').find( - {},{_id: 0, configs: 0, member_of: 0, password: 0, last_logoff: 0}).toArray(function(err, users) { - if(err) { - console.log(err); - return res.status(502).send([]); - } else if (users.length == 0) { - return res.status(404).send([]); - } else { - return res.status(200).send(users); - } - }); -}); -router.get('/api/v1/search/users', ensureAuthenticated, function(req, res) { - checkMongo(); - mongoApp.collection('users').find( - {},{ uid: 1}).toArray(function(err, users) { - if(err) { - console.log(err); - return res.status(502).send([]); - } else if (!users || users.length == 0) { - return res.status(404).send([]); - } else { - return res.status(200).send(users.map(function(u){return u.uid; })); - } - }); -}); - -router.route('/api/v1/users/:uid') - .get(ensureUser, function(req, res) { - checkMongo(); - mongoApp.collection('users').findOne( - {uid: req.params.uid}, - { - configs: 0, - member_of: 0, - bad_pwd_count: 0, - lockout_time: 0, - last_logoff: 0, - last_logon: 0, - account_expires: 0, - force_reset_pw: 0, - realms: 0, - role: 0, - preferences: 0 - } - , function(err, user) { - if(err) { - console.log(err); - return res.status(502).send({}); - } else if (!user || Object.keys(user).length === 0) { - return res.status(404).send({}); - } else { - return res.status(200).send(user); - } - }); - }) - .post(ensureUser, function(req, res) { - checkMongo(); - mongoApp.collection('users').findOneAndUpdate( - {uid: req.params.uid}, - { - $set: { - display_name: req.body.user.display_name, - title: req.body.user.title, - department: req.body.user.department, - company: req.body.user.company, - mail: req.body.user.mail, - icon: req.body.user.icon - } - } - , function(err, user) { - if(err) { - console.log(err); - return res.sendStatus(502); - } else if (!user) { - return res.sendStatus(404); - } else { - req.session.display_name = req.body.user.display_name; - req.session.title = req.body.user.title; - req.session.department = req.body.user.department; - req.session.company = req.body.user.company; - req.session.mail = req.body.user.mail; - req.session.icon = req.body.user.icon; - return res.sendStatus(201); - } - }); - }); - -router.route('/api/v1/users/:uid/configs') - .get(ensureUser, function(req, res) { - checkMongo(); - mongoApp.collection('configs').find( - {readers: req.params.uid} - ).toArray(function(err, data) { - if (err) { - console.log(err); - return res.status(502).send([]); - } else if (data.length == 0) { - return res.status(404).send([]); - } else { - return res.status(200).send(data); - } - }); - }) - .post(ensureUser, function(req, res) { - if(req.body.hasOwnProperty('disable')) { - checkMongo(); - mongoApp.collection('configs').findOneAndUpdate( - { _id: new ObjectID(req.body.disable) }, - { $pull: { readers: req.params.uid }}, - { returnOriginal: false }, - function(err, doc) { - if(err) { - console.log(err); - return res.status(502).send({message: 'fail'}); - } else { - return res.status(201).send({message: 'success'}); - } - }); - } else if (req.body.hasOwnProperty('remove')) { - checkMongo(); - mongoApp.collection('configs').deleteOne( - { _id: new ObjectID(req.body.remove) }, - function(err, doc) { - if(err) { - console.log(err); - return res.status(502).send({message: 'fail'}); - } else { - return res.status(201).send({message: 'success'}); - } - }); - } else if (req.body.hasOwnProperty('share')) { - checkMongo(); - mongoApp.collection('configs').findOneAndUpdate( - { _id: new ObjectID(req.body.share) }, - { $set: { readers : req.body.shared}}, - { returnOriginal: false }, - function(err, doc) { - if(err) { - console.log(err); - return res.status(502).send({message: 'fail'}); - } else { - return res.status(201).send({message: 'success'}); - } - }); - } else if (req.body.hasOwnProperty('edit')) { - checkMongo(); - mongoApp.collection('configs').findOneAndUpdate( - { _id: new ObjectID(req.body.edit._id) }, - { $set: { - readers : req.body.edit.readers, - config: req.body.edit.config, - name: req.body.edit.name, - type: req.body.edit.type - }}, - { returnOriginal: false }, - function(err, doc) { - if(err) { - console.log(err); - return res.status(502).send({message: 'fail'}); - } else { - return res.status(201).send({message: 'success'}); - } - }); - } else if (req.body.hasOwnProperty('add')) { - checkMongo(); - mongoApp.collection('configs').insertOne(req.body.add - ,function(err, doc) { - if(err) { - console.log(err); - return res.status(502).send({message: 'fail'}); - } else { - if('insertedId' in doc) { - var _id = doc['insertedId']; - var uri = '/u/configure?s=edit&id=' + _id; - return res.status(201).send({uri: uri}); - } else { - return res.status(502).send({message: 'fail'}); - } - } - }); - } else { - return res.status(502).send({message: 'fail'}); - } - - }); - -router.route('/api/v1/users/:uid/resetpw') - .post(ensureAdmin, function(req, res) { - if(req.body.hasOwnProperty('force_reset_pw') && req.body.hasOwnProperty('reset_key')) { - checkMongo(); - mongoApp.collection('users').findOneAndUpdate( - { uid: req.params.uid }, - { $set: { force_reset_pw : req.body.force_reset_pw, reset_key : req.body.reset_key} }, - { returnOriginal: false }, - function(err, doc) { - if(err) { - console.log(err); - return res.status(502).send({message: 'fail'}); - } else { - return res.status(201).send({message: 'success'}); - } - }); - } else { - return res.status(502).send({message: 'fail'}); - } - }); - -router.route('/api/v1/users/:uid/delete') - .post(ensureAdmin, function(req, res) { - checkMongo(); - mongoApp.collection('users').deleteOne( - { uid: req.params.uid }, - function(err, doc) { - if(err) { - console.log(err); - return res.status(502).send({message: 'fail'}); - } else { - return res.status(201).send({message: 'success'}); - } - }); - }); - -router.route('/api/v1/users/:uid/role') - .get(ensureAdmin, function(req, res) { - checkMongo(); - mongoApp.collection('users').findOne( - { uid: req.params.uid }, - { _id: 0, role : 1} - , function(err, data) { - if (err) { - console.log(err); - return res.status(502).send(null); - } else if (!data || Object.keys(data).length === 0) { - return res.status(404).send(null); - } else { - return res.status(200).send(data['uid']); - } - }); - }) - .post(ensureAdmin, function(req, res) { - if(req.body.hasOwnProperty('role')) { - checkMongo(); - mongoApp.collection('users').findOneAndUpdate( - { uid: req.params.uid }, - { $set: { role : req.body.role} }, - { returnOriginal: false }, - function(err, doc) { - if(err) { - console.log(err); - return res.status(502).send({message: 'fail'}); - } else { - return res.status(201).send({message: 'success'}); - } - }); - } else { - return res.status(502).send({message: 'fail'}); - } - }); - -router.route('/api/v1/users/:uid/blocked') - .get(ensureAdmin, function(req, res) { - checkMongo(); - mongoApp.collection('users').findOne( - { uid: req.params.uid }, - { _id: 0, blocked : 1} - , function(err, data) { - if (err) { - console.log(err); - return res.status(502).send(null); - } else if (!data || Object.keys(data).length === 0) { - return res.status(404).send(null); - } else { - return res.status(200).send(data['blocked']); - } - }); - }) - .post(ensureAdmin, function(req, res) { - if(req.body.hasOwnProperty('blocked')) { - checkMongo(); - mongoApp.collection('users').findOneAndUpdate( - { uid: req.params.uid }, - { $set: { blocked : req.body.blocked} }, - { returnOriginal: false }, - function(err, doc) { - if(err) { - console.log(err); - return res.status(502).send({message: 'fail'}); - } else { - return res.status(201).send({message: 'success'}); - } - }); - } else { - return res.status(502).send({message: 'fail'}); - } - }); - -router.route('/api/v1/users/:uid/studies') - .get(ensureAdmin, function(req, res) { - checkMongo(); - mongoApp.collection('users').findOne( - { uid: req.params.uid }, - { _id : 0, access: 1}, - function(err, doc) { - if(err) { - console.log(err); - return res.status(502).send({message: 'fail'}); - } else { - return res.status(201).send({message: 'success'}); - } - }); - }) - .post(ensureAdmin, function(req, res) { - if(req.body.hasOwnProperty('acl')) { - checkMongo(); - mongoApp.collection('users').findOneAndUpdate( - { uid: req.params.uid }, - { $set: { access: req.body.acl} }, - { returnOriginal: false }, - function(err, doc) { - if(err) { - console.log(err); - return res.status(502).send({message: 'fail'}); - } else { - return res.status(201).send({message: 'success'}); - } - }); - } else { - return res.status(502).send({message: 'fail'}); - } - }); - -router.route('/api/v1/users/:uid/configs/:config_id') - .get(ensureUser, function(req, res) { - checkMongo(); - mongoApp.collection('configs').findOne( - { readers: req.params.uid, _id: new ObjectID(req.params.config_id)} - , function(err, data) { - if (err) { - console.log(err); - return res.status(502).send({}); - } else if (!data || Object.keys(data).length === 0) { - return res.status(404).send({}); - } else { - return res.status(200).send(data); - } - }); - }); - - -router.route('/api/v1/users/:uid/preferences') - .get(ensureUser, function(req, res) { - checkMongo(); - mongoApp.collection('users').findOne( - { uid: req.params.uid }, - { _id: 0, preferences: 1 } - ,function(err, data) { - if (err) { - console.log(err); - return res.status(502).send({}); - } else if (!data || Object.keys(data).length === 0) { - return res.status(404).send({}); - } else { - return res.status(200).send(data['preferences']); - } - }); - }) - .post(ensureUser, function(req, res) { - if(req.body.hasOwnProperty('preferences')) { - checkMongo(); - mongoApp.collection('users').findOneAndUpdate( - { uid: req.params.uid }, - { $set: {preferences: req.body.preferences} }, - { returnOriginal: false }, - function(err, doc) { - if(err) { - console.log(err); - return res.status(502).send({message: 'fail'}); - } else if (!doc) { - return res.status(404).send({message: 'fail'}); - } else { - return res.status(201).send({message: 'success'}); - } - }); - } else { - console.log('No property known as configurations.'); - return res.status(502).send({message: 'fail'}); - } - }); - -router.route('/api/v1/users/:uid/config/file') - .post(ensureUser, function(req, res) { - upload(req, res, function(err) { - if (err) { - console.log(err); - return res.redirect('/u/configure?u=error'); - } - if (req.file) { - try { - var mimetype = req.file.mimetype; - if (mimetype != 'text/csv') { - return res.redirect('/u/configure?u=error'); - } - var file_path = path.resolve(req.file.path); - var schema = JSON.parse(fs.readFileSync('config.schema', 'utf8')); - csv().fromFile(file_path).then((data) => { - /* cast range to numbers and add colorbar */ - data.forEach(function(d) { - if (d.range) { - d.range = d.range.split(';').map(Number); - } - if (!d.colorbar || !d.colorbar.trim()) { - d.colorbar = 'RdYlBu'; - } - }); - - /* validate configuration file (JSON Schema) */ - var validation = validate(data, schema); - if (validation.errors.length > 0) { - return res.redirect('/u/configure?u=invalid'); - } - - /* add colorbrewer colors to each config item */ - data.forEach(function(d) { - var colorbar = d.colorbar ? d.colorbar : 'RdYlBu'; - if(colorbar == 'RdYlBu') { - d.color = ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", - "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"]; - } else { - d.color = colorbrewer[colorbar][9]; - } - }); - - var newConfig = { - owner: req.user, - config: data, - name: req.body.path, - type: 'matrix', - readers : [req.user], - created: (new Date()).toUTCString() - }; - checkMongo(); - mongoApp.collection('configs').insertOne(newConfig); - return res.redirect('/u/configure?u=success'); - }); - } catch(err) { - console.log('Error occurred while uploading a configuration file.'); - console.log(err); - return res.redirect('/u/configure?u=error'); - } - } else { - return res.redirect('/u/configure?u=error'); - } - }); - }); -module.exports = router; diff --git a/routes/users.js b/routes/users.js deleted file mode 100644 index 623e4302..00000000 --- a/routes/users.js +++ /dev/null @@ -1,9 +0,0 @@ -var express = require('express'); -var router = express.Router(); - -/* GET users listing. */ -router.get('/', function(req, res, next) { - res.send('respond with a resource'); -}); - -module.exports = router; diff --git a/server/app.js b/server/app.js new file mode 100644 index 00000000..2e800c97 --- /dev/null +++ b/server/app.js @@ -0,0 +1,188 @@ +import path from 'path' + +import bodyParser from 'body-parser' +import connectLiveReload from 'connect-livereload' +import MongoStore from 'connect-mongo' +import cookieParser from 'cookie-parser' +import express from 'express' +import expressSession from 'express-session' +import helmet from 'helmet' +import livereload from 'livereload' +import { MongoClient } from 'mongodb' +import morgan from 'morgan' +import passport from 'passport' +import { Strategy } from 'passport-local' +import favicon from 'serve-favicon' +import winston from 'winston' + +import { PASSPORT_FIELDS_ATTRIBUTES } from './constants' +import UserModel from './models/UserModel' +import adminRouter from './routes/admin' +import assessmentData from './routes/assessmentData' +import assessmentsRouter from './routes/assessments' +import authRouter from './routes/auth' +import chartsRouter from './routes/charts' +import configurationsRouter from './routes/configurations' +import dashboardsRouter from './routes/dashboards' +import indexRouter from './routes/index' +import participantsRouter from './routes/participants' +import siteMetadata from './routes/siteMetadata' +import usersRouter from './routes/users' +import userStudiesRouter from './routes/userStudies' +import { verifyHash } from './utils/crypto/hash' + +const localStrategy = Strategy +const isProduction = process.env.NODE_ENV === 'production' +const cookieAttributes = { + secure: isProduction, + maxAge: 24 * 60 * 60 * 1000, + sameSite: 'strict', +} +const app = express() + +if (process.env.NODE_ENV === 'development') { + const liveReloadServer = livereload.createServer() + liveReloadServer.watch(path.join(__dirname, '..', 'public', 'js')) + liveReloadServer.server.once('connection', () => { + setTimeout(() => { + liveReloadServer.refresh('/*') + }, 100) + }) + app.use(connectLiveReload()) +} + +/** favicon setup */ +app.use(favicon(path.join(__dirname, '../public/img/favicon.ico'))) + +app.use(helmet({ noSniff: true, contentSecurityPolicy: isProduction })) + +/** logger setup */ +morgan.token('remote-user', function (req) { + return req.user ? req.user.uid : 'unidentified' +}) +const logger = winston.createLogger({ + transports: [ + new winston.transports.Console({ + level: 'debug', + handleExceptions: true, + json: false, + colorize: true, + }), + ], + exitOnError: false, +}) +logger.stream = { + write(message) { + logger.info(message) + }, +} +app.use(morgan('tiny', { stream: logger.stream })) + +/** parsers setup */ +app.use(express.static('public')) +app.use(cookieParser(process.env.SESSION_SECRET)) +app.use(bodyParser.json({ limit: '500mb', extended: true })) +app.use(bodyParser.urlencoded({ limit: '50mb', extended: true })) + +/* database setup */ +const mongoURI = + process.env.MONGODB_URI || + `mongodb://${process.env.MONGODB_USER}:${process.env.MONGODB_PASSWORD}@${process.env.MONGODB_HOST}:27017/?tls=true&tlsCAfile=global-bundle.pem&retryWrites=false` + +logger.info(` + MongoDB URI: ${mongoURI.replace(/:.*@/g, ':MASKED:MASKED@')} +`) + +const client = new MongoClient(mongoURI, { monitorCommands: true }) +app.locals.appDb = client.db() + +UserModel.createFirstAdmin(app.locals.appDb) + +/** session store setup */ +app.set('trust proxy', true) +app.use( + expressSession({ + secret: process.env.SESSION_SECRET, + saveUninitialized: false, + resave: true, + proxy: true, + cookie: cookieAttributes, + store: MongoStore.create({ + mongoUrl: mongoURI, + }), + }) +) +app.use(passport.initialize()) +app.use(passport.session()) +//passport local strategy +passport.use( + new localStrategy( + { + ...PASSPORT_FIELDS_ATTRIBUTES, + }, + async (username, password, done) => { + const { appDb } = app.locals + const userAttributes = { uid: username } + + const user = await UserModel.findOne(appDb, userAttributes, { + password: 1, + role: 1, + display_name: 1, + mail: 1, + icon: 1, + access: 1, + account_expires: 1, + uid: 1, + }) + if (!user) return done(null, false) + + if (!verifyHash(password, user?.password)) return done(null, false) + + delete user.password + + return done(null, user) + } + ) +) + +passport.serializeUser(function (user, done) { + done(null, user) +}) + +passport.deserializeUser(async function (user, done) { + done(null, user) +}) + +app.use('/', adminRouter) +app.use('/', assessmentsRouter) +app.use('/', assessmentData) +app.use('/', authRouter) +app.use('/', chartsRouter) +app.use('/', configurationsRouter) +app.use('/', dashboardsRouter) +app.use('/', indexRouter) +app.use('/', participantsRouter) +app.use('/', siteMetadata) +app.use('/', usersRouter) +app.use('/', userStudiesRouter) +app.use('./img', express.static(path.join(__dirname, '../public/img'))) + +app.get('/*', async (req, res, next) => { + return res.sendFile( + path.join(__dirname, '..', 'public', 'index.html'), + (err) => { + if (err) { + return next(err) + } + } + ) +}) + +//catch any other error +app.use(function (err, _req, res, _) { + console.error(err) + + return res.send({ error: err.message }) +}) + +export default app diff --git a/server/bin/www.js b/server/bin/www.js new file mode 100755 index 00000000..3c95e0e6 --- /dev/null +++ b/server/bin/www.js @@ -0,0 +1,82 @@ +/** + * Module dependencies. + */ + +import { createServer } from 'http' + +import { configDotenv } from 'dotenv' + +import app from '../app' + +configDotenv({ path: '.env' }) + +/** + * Get port from environment and store in Express. + */ + +const port = process.env.SERVER_PORT || 8000 +app.set('port', port) + +/** + * Create HTTP server. + */ + +const server = createServer(app) + +/** + * Listen on provided port, on all network interfaces. + */ + +server.listen(port) +server.on('error', onError) +server.on('listening', onListening) + +/** + * Event listener for HTTP server "error" event. + */ + +function onError(error) { + if (error.syscall !== 'listen') { + throw error + } + + const bind = typeof port === 'string' ? 'Pipe ' + port : 'Port ' + port + + // handle specific listen errors with friendly messages + switch (error.code) { + case 'EACCES': + console.error(bind + ' requires elevated privileges') + process.exit(1) + break + case 'EADDRINUSE': + console.error(bind + ' is already in use') + process.exit(1) + break + default: + throw error + } +} + +/** + * Event listener for HTTP server "listening" event. + */ + +function onListening() { + const addr = server.address() + const bind = typeof addr === 'string' ? 'pipe ' + addr : 'port ' + addr.port + console.log('Listening on ' + bind) +} + +process.on('SIGTERM', shutDown) +process.on('SIGINT', shutDown) + +function shutDown() { + console.log('Received kill signal, shutting down gracefully') + if (app.locals.connection) { + app.locals.connection.close() + } + server.close(() => { + console.log('Http server closed.') + process.exit(0) + }) +} diff --git a/server/constants/defaultUserConfig.js b/server/constants/defaultUserConfig.js new file mode 100644 index 00000000..1c8db264 --- /dev/null +++ b/server/constants/defaultUserConfig.js @@ -0,0 +1,4109 @@ +const userConfig = {} +userConfig.colormap = [ + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_00_filesize', + label: 'callLog_00HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_01_filesize', + label: 'callLog_01HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_02_filesize', + label: 'callLog_02HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_03_filesize', + label: 'callLog_03HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_04_filesize', + label: 'callLog_04HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_05_filesize', + label: 'callLog_05HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_06_filesize', + label: 'callLog_06HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_07_filesize', + label: 'callLog_07HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_08_filesize', + label: 'callLog_08HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_09_filesize', + label: 'callLog_09HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_10_filesize', + label: 'callLog_10HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_11_filesize', + label: 'callLog_11HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_12_filesize', + label: 'callLog_12HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_13_filesize', + label: 'callLog_13HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_14_filesize', + label: 'callLog_14HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_15_filesize', + label: 'callLog_15HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_16_filesize', + label: 'callLog_16HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_17_filesize', + label: 'callLog_17HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_18_filesize', + label: 'callLog_18HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_19_filesize', + label: 'callLog_19HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_20_filesize', + label: 'callLog_20HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_21_filesize', + label: 'callLog_21HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_22_filesize', + label: 'callLog_22HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'callLog', + analysis: 'balancesheetCalllog', + variable: 'callLog_hour_23_filesize', + label: 'callLog_23HR', + range: [165, 565], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_00_filesize', + label: 'textsLog_00HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_01_filesize', + label: 'textsLog_01HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_02_filesize', + label: 'textsLog_02HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_03_filesize', + label: 'textsLog_03HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_04_filesize', + label: 'textsLog_04HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_05_filesize', + label: 'textsLog_05HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_06_filesize', + label: 'textsLog_06HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_07_filesize', + label: 'textsLog_07HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_08_filesize', + label: 'textsLog_08HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_09_filesize', + label: 'textsLog_09HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_10_filesize', + label: 'textsLog_10HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_11_filesize', + label: 'textsLog_11HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_12_filesize', + label: 'textsLog_12HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_13_filesize', + label: 'textsLog_13HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_14_filesize', + label: 'textsLog_14HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_15_filesize', + label: 'textsLog_15HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_16_filesize', + label: 'textsLog_16HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_17_filesize', + label: 'textsLog_17HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_18_filesize', + label: 'textsLog_18HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_19_filesize', + label: 'textsLog_19HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_20_filesize', + label: 'textsLog_20HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_21_filesize', + label: 'textsLog_21HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_22_filesize', + label: 'textsLog_22HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'textsLog', + analysis: 'balancesheetTextslog', + variable: 'textsLog_hour_23_filesize', + label: 'textsLog_23HR', + range: [174, 2524], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_00_filesize', + label: 'surveyAnswers_00HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_01_filesize', + label: 'surveyAnswers_01HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_02_filesize', + label: 'surveyAnswers_02HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_03_filesize', + label: 'surveyAnswers_03HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_04_filesize', + label: 'surveyAnswers_04HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_05_filesize', + label: 'surveyAnswers_05HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_06_filesize', + label: 'surveyAnswers_06HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_07_filesize', + label: 'surveyAnswers_07HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_08_filesize', + label: 'surveyAnswers_08HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_09_filesize', + label: 'surveyAnswers_09HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_10_filesize', + label: 'surveyAnswers_10HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_11_filesize', + label: 'surveyAnswers_11HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_12_filesize', + label: 'surveyAnswers_12HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_13_filesize', + label: 'surveyAnswers_13HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_14_filesize', + label: 'surveyAnswers_14HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_15_filesize', + label: 'surveyAnswers_15HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_16_filesize', + label: 'surveyAnswers_16HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_17_filesize', + label: 'surveyAnswers_17HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_18_filesize', + label: 'surveyAnswers_18HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_19_filesize', + label: 'surveyAnswers_19HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_20_filesize', + label: 'surveyAnswers_20HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_21_filesize', + label: 'surveyAnswers_21HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_22_filesize', + label: 'surveyAnswers_22HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'surveyAnswers', + analysis: 'balancesheetSurveyanswers', + variable: 'surveyAnswers_hour_23_filesize', + label: 'surveyAnswers_23HR', + range: [7400, 13300], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_00_filesize', + label: 'voiceRecording_00HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_01_filesize', + label: 'voiceRecording_01HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_02_filesize', + label: 'voiceRecording_02HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_03_filesize', + label: 'voiceRecording_03HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_04_filesize', + label: 'voiceRecording_04HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_05_filesize', + label: 'voiceRecording_05HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_06_filesize', + label: 'voiceRecording_06HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_07_filesize', + label: 'voiceRecording_07HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_08_filesize', + label: 'voiceRecording_08HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_09_filesize', + label: 'voiceRecording_09HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_10_filesize', + label: 'voiceRecording_10HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_11_filesize', + label: 'voiceRecording_11HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_12_filesize', + label: 'voiceRecording_12HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_13_filesize', + label: 'voiceRecording_13HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_14_filesize', + label: 'voiceRecording_14HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_15_filesize', + label: 'voiceRecording_15HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_16_filesize', + label: 'voiceRecording_16HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_17_filesize', + label: 'voiceRecording_17HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_18_filesize', + label: 'voiceRecording_18HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_19_filesize', + label: 'voiceRecording_19HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_20_filesize', + label: 'voiceRecording_20HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_21_filesize', + label: 'voiceRecording_21HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_22_filesize', + label: 'voiceRecording_22HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'voiceRecording', + analysis: 'balancesheetVoicerecording', + variable: 'voiceRecording_hour_23_filesize', + label: 'voiceRecording_23HR', + range: [249566, 648577], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_00_filesize', + label: 'powerState_00HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_01_filesize', + label: 'powerState_01HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_02_filesize', + label: 'powerState_02HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_03_filesize', + label: 'powerState_03HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_04_filesize', + label: 'powerState_04HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_05_filesize', + label: 'powerState_05HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_06_filesize', + label: 'powerState_06HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_07_filesize', + label: 'powerState_07HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_08_filesize', + label: 'powerState_08HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_09_filesize', + label: 'powerState_09HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_10_filesize', + label: 'powerState_10HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_11_filesize', + label: 'powerState_11HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_12_filesize', + label: 'powerState_12HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_13_filesize', + label: 'powerState_13HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_14_filesize', + label: 'powerState_14HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_15_filesize', + label: 'powerState_15HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_16_filesize', + label: 'powerState_16HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_17_filesize', + label: 'powerState_17HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_18_filesize', + label: 'powerState_18HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_19_filesize', + label: 'powerState_19HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_20_filesize', + label: 'powerState_20HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_21_filesize', + label: 'powerState_21HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_22_filesize', + label: 'powerState_22HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'powerState', + analysis: 'balancesheetPowerstate', + variable: 'powerState_hour_23_filesize', + label: 'powerState_23HR', + range: [77, 2680], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_00_filesize', + label: 'gps_00HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_01_filesize', + label: 'gps_01HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_02_filesize', + label: 'gps_02HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_03_filesize', + label: 'gps_03HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_04_filesize', + label: 'gps_04HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_05_filesize', + label: 'gps_05HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_06_filesize', + label: 'gps_06HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_07_filesize', + label: 'gps_07HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_08_filesize', + label: 'gps_08HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_09_filesize', + label: 'gps_09HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_10_filesize', + label: 'gps_10HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_11_filesize', + label: 'gps_11HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_12_filesize', + label: 'gps_12HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_13_filesize', + label: 'gps_13HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_14_filesize', + label: 'gps_14HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_15_filesize', + label: 'gps_15HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_16_filesize', + label: 'gps_16HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_17_filesize', + label: 'gps_17HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_18_filesize', + label: 'gps_18HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_19_filesize', + label: 'gps_19HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_20_filesize', + label: 'gps_20HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_21_filesize', + label: 'gps_21HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_22_filesize', + label: 'gps_22HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'gps', + analysis: 'balancesheetGps', + variable: 'gps_hour_23_filesize', + label: 'gps_23HR', + range: [37500, 60000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_00_filesize', + label: 'accel_00HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_01_filesize', + label: 'accel_01HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_02_filesize', + label: 'accel_02HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_03_filesize', + label: 'accel_03HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_04_filesize', + label: 'accel_04HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_05_filesize', + label: 'accel_05HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_06_filesize', + label: 'accel_06HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_07_filesize', + label: 'accel_07HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_08_filesize', + label: 'accel_08HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_09_filesize', + label: 'accel_09HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_10_filesize', + label: 'accel_10HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_11_filesize', + label: 'accel_11HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_12_filesize', + label: 'accel_12HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_13_filesize', + label: 'accel_13HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_14_filesize', + label: 'accel_14HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_15_filesize', + label: 'accel_15HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_16_filesize', + label: 'accel_16HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_17_filesize', + label: 'accel_17HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_18_filesize', + label: 'accel_18HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_19_filesize', + label: 'accel_19HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_20_filesize', + label: 'accel_20HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_21_filesize', + label: 'accel_21HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_22_filesize', + label: 'accel_22HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'accel', + analysis: 'balancesheetAccel', + variable: 'accel_hour_23_filesize', + label: 'accel_23HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_00_filesize', + label: 'wifiLog_00HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_01_filesize', + label: 'wifiLog_01HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_02_filesize', + label: 'wifiLog_02HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_03_filesize', + label: 'wifiLog_03HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_04_filesize', + label: 'wifiLog_04HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_05_filesize', + label: 'wifiLog_05HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_06_filesize', + label: 'wifiLog_06HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_07_filesize', + label: 'wifiLog_07HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_08_filesize', + label: 'wifiLog_08HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_09_filesize', + label: 'wifiLog_09HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_10_filesize', + label: 'wifiLog_10HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_11_filesize', + label: 'wifiLog_11HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_12_filesize', + label: 'wifiLog_12HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_13_filesize', + label: 'wifiLog_13HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_14_filesize', + label: 'wifiLog_14HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_15_filesize', + label: 'wifiLog_15HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_16_filesize', + label: 'wifiLog_16HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_17_filesize', + label: 'wifiLog_17HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_18_filesize', + label: 'wifiLog_18HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_19_filesize', + label: 'wifiLog_19HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_20_filesize', + label: 'wifiLog_20HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_21_filesize', + label: 'wifiLog_21HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_22_filesize', + label: 'wifiLog_22HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'wifiLog', + analysis: 'balancesheetWifilog', + variable: 'wifiLog_hour_23_filesize', + label: 'wifiLog_23HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_00_filesize', + label: 'bluetoothLog_00HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_01_filesize', + label: 'bluetoothLog_01HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_02_filesize', + label: 'bluetoothLog_02HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_03_filesize', + label: 'bluetoothLog_03HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_04_filesize', + label: 'bluetoothLog_04HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_05_filesize', + label: 'bluetoothLog_05HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_06_filesize', + label: 'bluetoothLog_06HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_07_filesize', + label: 'bluetoothLog_07HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_08_filesize', + label: 'bluetoothLog_08HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_09_filesize', + label: 'bluetoothLog_09HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_10_filesize', + label: 'bluetoothLog_10HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_11_filesize', + label: 'bluetoothLog_11HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_12_filesize', + label: 'bluetoothLog_12HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_13_filesize', + label: 'bluetoothLog_13HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_14_filesize', + label: 'bluetoothLog_14HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_15_filesize', + label: 'bluetoothLog_15HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_16_filesize', + label: 'bluetoothLog_16HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_17_filesize', + label: 'bluetoothLog_17HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_18_filesize', + label: 'bluetoothLog_18HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_19_filesize', + label: 'bluetoothLog_19HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_20_filesize', + label: 'bluetoothLog_20HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_21_filesize', + label: 'bluetoothLog_21HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_22_filesize', + label: 'bluetoothLog_22HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, + { + category: 'bluetoothLog', + analysis: 'balancesheetBluetoothlog', + variable: 'bluetoothLog_hour_23_filesize', + label: 'bluetoothLog_23HR', + range: [1711938, 2000000], + color: [ + '#4575b4', + '#74add1', + '#abd9e9', + '#e0f3f8', + '#ffffbf', + '#fee090', + '#fdae61', + '#f46d43', + '#d73027', + ], + text: false, + }, +] + +export default userConfig diff --git a/server/constants/index.js b/server/constants/index.js new file mode 100644 index 00000000..43926539 --- /dev/null +++ b/server/constants/index.js @@ -0,0 +1,37 @@ +import { + ADMIN_ROLE, + ASC, + ALL_SUBJECTS_MONGO_PROJECTION, + DEFAULT_PARTICIPANTS_SORT, + EMPTY_VALUE, + FILTERS_FORM, + INCLUSION_EXCLUSION_CRITERIA_FORM, + N_A, + PASSPORT_FIELDS_ATTRIBUTES, + SOCIODEMOGRAPHICS_FORM, + STUDIES_TO_OMIT, + SITE, + SITE_CODE, + SITE_NAME, + TOTALS_STUDY, + TOTAL_LABEL, +} from './vars' + +export { + ADMIN_ROLE, + ASC, + ALL_SUBJECTS_MONGO_PROJECTION, + DEFAULT_PARTICIPANTS_SORT, + EMPTY_VALUE, + FILTERS_FORM, + INCLUSION_EXCLUSION_CRITERIA_FORM, + N_A, + PASSPORT_FIELDS_ATTRIBUTES, + SOCIODEMOGRAPHICS_FORM, + STUDIES_TO_OMIT, + SITE, + SITE_CODE, + SITE_NAME, + TOTALS_STUDY, + TOTAL_LABEL, +} diff --git a/server/constants/vars.js b/server/constants/vars.js new file mode 100644 index 00000000..76742723 --- /dev/null +++ b/server/constants/vars.js @@ -0,0 +1,33 @@ +export const ASC = 'ASC' +export const N_A = 'N/A' +export const TOTALS_STUDY = 'Totals' +export const EMPTY_VALUE = '' +export const STUDIES_TO_OMIT = ['files', 'combined'] +export const INCLUSION_EXCLUSION_CRITERIA_FORM = + 'form_inclusionexclusion_criteria_review' +export const SOCIODEMOGRAPHICS_FORM = 'form_sociodemographics' +// form_filters_status has all of the filters for participants +export const FILTERS_FORM = 'form_filters' +export const TOTAL_LABEL = 'Total' +export const SITE = 'Site' +export const SITE_NAME = 'Site Name' +export const SITE_CODE = 'Site Code' + +export const ALL_SUBJECTS_MONGO_PROJECTION = { + study: 1, + _id: 0, + participant: 1, + dayData: 1, +} + +export const PASSPORT_FIELDS_ATTRIBUTES = { + usernameField: 'username', + passwordField: 'password', +} + +export const DEFAULT_PARTICIPANTS_SORT = { + sortBy: 'participant', + sortDirection: ASC, +} + +export const ADMIN_ROLE = 'admin' diff --git a/server/controllers/adminController/adminController.test.js b/server/controllers/adminController/adminController.test.js new file mode 100644 index 00000000..252e311f --- /dev/null +++ b/server/controllers/adminController/adminController.test.js @@ -0,0 +1,83 @@ +import AdminUsersController from '.' +import { createRequestWithUser, createResponse } from '../../../test/fixtures' + +describe('AdminUsersController', () => { + describe(AdminUsersController.update, () => { + describe('when successful', () => { + const request = createRequestWithUser({ + params: { uid: 'uid' }, + }) + const response = createResponse() + + it('sends a status of 200 with a data result', async () => { + request.app.locals.appDb.findOneAndUpdate.mockResolvedValueOnce({ + uid: 'uid', + }) + + await AdminUsersController.update(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: { uid: 'uid' }, + }) + }) + }) + + describe('when unsuccessful', () => { + const request = createRequestWithUser({ + params: { uid: 'uid' }, + }) + const response = createResponse() + + it('returns a 404 error with the error message', async () => { + request.app.locals.appDb.findOneAndUpdate.mockRejectedValueOnce( + new Error('some error') + ) + + await AdminUsersController.update(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'some error', + }) + }) + }) + }) + + describe(AdminUsersController.destroy, () => { + const params = { uid: 'owl' } + + describe('When successful', () => { + it('returns a status of 204', async () => { + const request = createRequestWithUser(params) + const response = createResponse() + + request.app.locals.appDb.deleteOne.mockResolvedValueOnce({ + deletedCount: 1, + }) + + await AdminUsersController.destroy(request, response) + + expect(response.status).toHaveBeenCalledWith(204) + }) + }) + + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message property when there is an error', async () => { + const request = createRequestWithUser(params) + const response = createResponse() + + request.app.locals.appDb.deleteOne.mockRejectedValueOnce( + new Error('destroy error') + ) + + await AdminUsersController.destroy(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'destroy error', + }) + }) + }) + }) +}) diff --git a/server/controllers/adminController/index.js b/server/controllers/adminController/index.js new file mode 100644 index 00000000..30bcb4a9 --- /dev/null +++ b/server/controllers/adminController/index.js @@ -0,0 +1,29 @@ +import UserModel from '../../models/UserModel' + +const AdminUsersController = { + update: async (req, res) => { + try { + const { appDb } = req.app.locals + const { uid } = req.params + const updatedUser = await UserModel.update(appDb, uid, req.body) + + return res.status(200).json({ data: updatedUser }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, + destroy: async (req, res) => { + try { + const { appDb } = req.app.locals + const { uid } = req.params + + await UserModel.destroy(appDb, uid) + + return res.status(204).end() + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, +} + +export default AdminUsersController diff --git a/server/controllers/api/assessmentDayDataController/assessmentDayDataController.test.js b/server/controllers/api/assessmentDayDataController/assessmentDayDataController.test.js new file mode 100644 index 00000000..a8efaa02 --- /dev/null +++ b/server/controllers/api/assessmentDayDataController/assessmentDayDataController.test.js @@ -0,0 +1,436 @@ +import AssessmentDayDataController from '.' +import { + createAssessmentDayData, + createAssessmentDayDataMetadata, + createNewAssessmentDayData, + createRequest, + createResponse, + createAsessmentVariable, + createParticipantDayData, +} from '../../../../test/fixtures' +import AssessmentVariablesModel from '../../../models/AssessmentVariablesModel' +import { collections } from '../../../utils/mongoCollections' + +describe('assessmentDayDataController', () => { + let appDb + + beforeAll(async () => { + appDb = await global.MONGO_INSTANCE.db() + }) + beforeEach(async () => { + await appDb.createCollection(collections.metadata) + await appDb.createCollection(collections.assessmentDayData) + await appDb.createCollection(collections.assessments) + await appDb.createCollection(collections.assessmentVariables) + }) + + afterEach(async () => { + const existingCollections = await appDb.listCollections().toArray() + const collectionNames = existingCollections.map((c) => c.name) + if (collectionNames.includes(collections.metadata)) { + await appDb.collection(collections.metadata).drop() + } + if (collectionNames.includes(collections.assessmentDayData)) { + await appDb.collection(collections.assessmentDayData).drop() + } + if (collectionNames.includes(collections.assessments)) { + await appDb.collection(collections.assessments).drop() + } + if (collectionNames.includes(collections.assessmentVariables)) { + await appDb.collection(collections.assessmentVariables).drop() + } + }) + afterAll(async () => { + await appDb.dropDatabase() + }) + + describe(AssessmentDayDataController.create, () => { + describe('When successful', () => { + const initialAssessmentVariables = [ + createAsessmentVariable({ + name: 'var1', + }), + createAsessmentVariable({ + name: 'var2', + }), + createAsessmentVariable({ + name: 'var3', + }), + createAsessmentVariable({ + name: 'var4', + }), + createAsessmentVariable({ + name: 'var6', + }), + createAsessmentVariable({ + name: 'var7', + }), + ] + const assessmentDayDataControllerMetadata = + createAssessmentDayDataMetadata({ + study: 'study', + participant: 'participant', + assessment: 'assessment', + units: 'day', + start: '1', + end: '4', + time_end: '4', + Consent: new Date('2020-01-02'), + }) + const updatedParticipantDayData = [ + createParticipantDayData({ + day: 1, + var1: 9, + var2: 4, + var3: 'str', + }), + createParticipantDayData({ + day: 4, + var1: 9, + var2: 4, + var3: 'str', + }), + createParticipantDayData({ + day: 8, + var1: 2, + var2: 2, + var3: 'str', + var4: 5, + var6: 6, + var7: 'str2', + }), + createParticipantDayData({ + day: 12, + var1: 2, + var2: 2, + var3: 'str', + var4: 5, + var6: 6, + var7: 'str2', + }), + ] + const initialParticipantDayData = [ + createParticipantDayData({ + day: 1, + var1: 1, + var2: 2, + var3: 'str', + }), + createParticipantDayData({ + day: 8, + var1: 2, + var2: 2, + var3: 'str', + var4: 5, + var6: 6, + var7: 'str2', + }), + ] + + it('creates a participants assessment day data', async () => { + const data = createNewAssessmentDayData({ + metadata: assessmentDayDataControllerMetadata, + participant_assessments: initialParticipantDayData, + }) + const request = createRequest({ + body: data, + app: { locals: { appDb } }, + }) + const response = createResponse() + + await AssessmentDayDataController.create(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: 'participant assessment data imported', + }) + + const newDocument = await appDb + .collection(collections.assessmentDayData) + .findOne( + { participant: 'participant' }, + { + projection: { _id: 0 }, + } + ) + + expect(newDocument).toEqual({ + ...assessmentDayDataControllerMetadata, + dayData: initialParticipantDayData, + }) + }) + + it('updates existing day data records or adds new ones', async () => { + await appDb.collection(collections.assessmentDayData).insertOne({ + ...assessmentDayDataControllerMetadata, + dayData: initialParticipantDayData, + }) + + const data = createNewAssessmentDayData({ + metadata: createAssessmentDayDataMetadata({ + ...assessmentDayDataControllerMetadata, + end: '12', + time_end: '12', + }), + participant_assessments: updatedParticipantDayData, + }) + const request = createRequest({ + body: data, + app: { locals: { appDb } }, + }) + const response = createResponse() + + await AssessmentDayDataController.create(request, response) + + const newDocument = await appDb + .collection(collections.assessmentDayData) + .findOne( + { participant: 'participant' }, + { + projection: { _id: 0, updatedAt: 0 }, + } + ) + + expect(newDocument).toEqual({ + ...createAssessmentDayDataMetadata({ + ...assessmentDayDataControllerMetadata, + end: '12', + time_end: '12', + daysInStudy: 12, + Active: 1, + Consent: new Date('2020-01-02'), + assessment: 'assessment', + }), + dayData: updatedParticipantDayData, + }) + }) + it('creates a metadata document', async () => { + const data = createNewAssessmentDayData({ + metadata: assessmentDayDataControllerMetadata, + participant_assessments: initialParticipantDayData, + }) + const request = createRequest({ + body: data, + app: { locals: { appDb } }, + }) + const response = createResponse() + + await AssessmentDayDataController.create(request, response) + + const newDocument = await appDb + .collection(collections.metadata) + .findOne( + { study: 'study' }, + { + projection: { + _id: 0, + 'participants.synced': 0, + updatedAt: 0, + }, + } + ) + + expect(newDocument).toEqual({ + study: 'study', + participants: [ + { + Active: 1, + Consent: new Date('2020-01-02'), + study: 'study', + participant: 'participant', + daysInStudy: 8, + }, + ], + }) + expect(newDocument.participants.length).toEqual(1) + }) + + it('updates a metadata document', async () => { + const participant = { + Active: 1, + study: 'study', + participant: 'participant', + Consent: new Date('2022-06-09'), + } + + await appDb.collection(collections.metadata).insertOne({ + study: 'study', + participants: [participant], + }) + + const data = createNewAssessmentDayData({ + metadata: assessmentDayDataControllerMetadata, + participant_assessments: initialParticipantDayData, + }) + const request = createRequest({ + body: data, + app: { locals: { appDb } }, + }) + const response = createResponse() + + await AssessmentDayDataController.create(request, response) + + const newDocument = await appDb + .collection(collections.metadata) + .findOne( + { study: 'study' }, + { + projection: { + _id: 0, + }, + } + ) + + expect(newDocument.participants[0]).toHaveProperty('synced') + expect(newDocument.participants[0].daysInStudy).toEqual(8) + }) + it('creates new assessment and assessment variables documents', async () => { + const newAssessment = 'initialAssessment' + const assessment_variables = initialAssessmentVariables + const data = createNewAssessmentDayData({ + metadata: createAssessmentDayDataMetadata({ + ...assessmentDayDataControllerMetadata, + assessment: newAssessment, + }), + participant_assessments: initialParticipantDayData, + assessment_variables, + }) + const request = createRequest({ + body: data, + app: { locals: { appDb } }, + }) + const response = createResponse() + + await AssessmentDayDataController.create(request, response) + + const assessmentDocument = await appDb + .collection(collections.assessments) + .findOne({ + name: newAssessment, + }) + const assessmentVariables = await appDb + .collection(collections.assessmentVariables) + .find( + { assessment_id: assessmentDocument._id }, + { projection: { _id: 0, assessment_id: 0 } } + ) + .sort({ name: 1 }) + .toArray() + + expect(assessmentVariables).toEqual(assessment_variables) + expect(assessmentDocument.name).toEqual(newAssessment) + }) + it('Updates the assessment variables when there are new variables', async () => { + const assessmentVariableSpy = jest.spyOn( + AssessmentVariablesModel, + 'upsert' + ) + const newAssessment = 'update-vars-assessment' + const newAssessmentVariables = [ + createAsessmentVariable({ + name: 'var1', + }), + createAsessmentVariable({ + name: 'var2', + }), + createAsessmentVariable({ + name: 'var3', + }), + createAsessmentVariable({ + name: 'var4', + }), + createAsessmentVariable({ + name: 'var6', + }), + createAsessmentVariable({ + name: 'var7', + }), + createAsessmentVariable({ + name: 'var5', + }), + createAsessmentVariable({ + name: 'new-var1', + }), + createAsessmentVariable({ + name: 'newvar2', + }), + ] + + const data = createNewAssessmentDayData({ + metadata: createAssessmentDayDataMetadata({ + ...assessmentDayDataControllerMetadata, + assessment: newAssessment, + }), + participant_assessments: initialParticipantDayData, + assessment_variables: newAssessmentVariables, + }) + const request = createRequest({ + body: data, + app: { locals: { appDb } }, + }) + const response = createResponse() + + await AssessmentDayDataController.create(request, response) + const assessment = await appDb + .collection(collections.assessments) + .findOne({ name: newAssessment }) + + newAssessmentVariables.forEach((variable, i) => { + expect(assessmentVariableSpy.mock.calls[i]).toEqual([ + appDb, + { + name: variable.name, + assessment_id: assessment._id, + }, + { + name: variable.name, + assessment_id: assessment._id, + }, + ]) + }) + expect(assessmentVariableSpy).toBeCalledTimes( + newAssessmentVariables.length + ) + assessmentVariableSpy.mockClear() + }) + }) + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message when payload is missing', async () => { + const request = createRequest() + const response = createResponse() + + await AssessmentDayDataController.create(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + message: 'Nothing to import', + }) + }) + }) + }) + describe(AssessmentDayDataController.destroy, () => { + describe('when successful', () => { + it('deletes all documents in the assessmentDayData collection', async () => { + await appDb + .collection(collections.assessmentDayData) + .insertMany([createAssessmentDayData(), createAssessmentDayData()]) + + const request = createRequest({ + app: { locals: { appDb } }, + }) + + const response = createResponse() + + await AssessmentDayDataController.destroy(request, response) + + const remainingCollections = await appDb.listCollections().toArray() + expect(response.status).toHaveBeenCalledWith(200) + expect( + remainingCollections + .map((c) => c.name) + .includes(collections.assessmentDayData) + ).toBe(false) + }) + }) + }) +}) diff --git a/server/controllers/api/assessmentDayDataController/index.js b/server/controllers/api/assessmentDayDataController/index.js new file mode 100644 index 00000000..b97ecc2c --- /dev/null +++ b/server/controllers/api/assessmentDayDataController/index.js @@ -0,0 +1,184 @@ +import AssessmentDayDataModel from '../../../models/AssessmentDayDataModel' +import AssessmentModel from '../../../models/AssessmentModel' +import AssessmentVariablesModel from '../../../models/AssessmentVariablesModel' +import SiteMetadataModel from '../../../models/SiteMetadataModel' +import { collections } from '../../../utils/mongoCollections' + +const AssessmentDayDataController = { + create: async (req, res, next) => { + try { + const { appDb } = req.app.locals + const { metadata, participant_assessments, assessment_variables } = + req.body + + if (!metadata || !participant_assessments.length) + return res.status(400).json({ message: 'Nothing to import' }) + + const { assessment, participant, study, Consent, Active } = metadata + let parsedConsent = null + + try { + if (Consent) { + parsedConsent = new Date(Consent) + } + } catch { + // Missing consent dates could come in a number of formats, + // so we attempt to parse the date and leave it as null if there's + // an error + } + + const query = { + assessment, + participant, + } + const assessmentQuery = { + name: assessment, + } + const newAssessmentProperties = AssessmentModel.withDefaults({ + name: assessment, + }) + + const participantAssessmentData = await AssessmentDayDataModel.findOne( + appDb, + query + ) + + let sortedDayData = participant_assessments + let maxDayInDayData = Math.max( + ...participant_assessments.map((pa) => pa.day) + ) + if (participantAssessmentData) { + sortedDayData = sortDayData( + participantAssessmentData, + participant_assessments + ) + maxDayInDayData = Math.max( + ...sortedDayData.map((dayData) => dayData.day) + ) + await AssessmentDayDataModel.upsert(appDb, query, { + ...participantAssessmentData, + ...metadata, + daysInStudy: maxDayInDayData, + dayData: sortedDayData, + }) + } else { + await AssessmentDayDataModel.upsert(appDb, query, { + ...metadata, + Consent: parsedConsent, + dayData: participant_assessments, + }) + } + + const studyMetadata = await SiteMetadataModel.findOne(appDb, { + study, + }) + + if (!studyMetadata) { + await SiteMetadataModel.upsert$Set( + appDb, + { study }, + { + study, + participants: [ + { + Active, + Consent: parsedConsent, + study, + participant, + daysInStudy: maxDayInDayData, + synced: new Date(), + }, + ], + } + ) + } else { + const isParticipantInDocument = await SiteMetadataModel.findOne(appDb, { + participants: { $elemMatch: { participant } }, + }) + + if (isParticipantInDocument) { + await SiteMetadataModel.upsert$Set( + appDb, + { participants: { $elemMatch: { participant } } }, + { + 'participants.$.daysInStudy': maxDayInDayData, + 'participants.$.synced': new Date(), + } + ) + } else { + await SiteMetadataModel.upsert$addToSet( + appDb, + { study }, + { + participants: { + Active, + Consent: parsedConsent, + daysInStudy: maxDayInDayData, + study, + participant, + synced: new Date(), + }, + } + ) + } + } + + const currentAssessment = await AssessmentModel.upsert( + appDb, + assessmentQuery, + newAssessmentProperties + ) + + if (assessment_variables.length) { + await Promise.all( + assessment_variables.map(async ({ name }) => { + const variableAttributes = { + name, + assessment_id: currentAssessment._id, + } + + return await AssessmentVariablesModel.upsert( + appDb, + variableAttributes, + variableAttributes + ) + }) + ) + } + return res + .status(200) + .json({ data: `${participant} ${assessment} data imported` }) + } catch (err) { + return next(err) + } + }, + destroy: async (req, res, next) => { + try { + const { appDb } = req.app.locals + await appDb.collection(collections.assessmentDayData).drop() + + return res.status(200) + } catch (error) { + next(error) + } + }, +} + +function sortDayData(participantAssessmentData, participant_assessments) { + const { dayData } = participantAssessmentData + const filteredDays = dayData.filter( + ({ day }) => + !participant_assessments.find((assessment) => day === assessment.day) + ) + return filteredDays + .concat(participant_assessments) + .sort((prevParticipant, nextParticipant) => + prevParticipant.day < nextParticipant.day + ? -1 + : prevParticipant.day > nextParticipant.day + ? 1 + : 0 + ) +} + +export default AssessmentDayDataController diff --git a/server/controllers/api/siteMetadataController/index.js b/server/controllers/api/siteMetadataController/index.js new file mode 100644 index 00000000..02b6acb0 --- /dev/null +++ b/server/controllers/api/siteMetadataController/index.js @@ -0,0 +1,84 @@ +import SiteMetadataModel from '../../../models/SiteMetadataModel' +import { collections } from '../../../utils/mongoCollections' + +const SiteMetadataController = { + create: async (req, res, next) => { + try { + const { appDb } = req.app.locals + const { metadata, participants } = req.body + const { study } = metadata + + participants.forEach((participant, i) => { + participants[i].Consent = new Date(participant.Consent) + }) + const studyMetadata = await SiteMetadataModel.findOne(appDb, { study }) + + if (!studyMetadata) { + await SiteMetadataModel.upsert$Set( + appDb, + { study }, + { + ...metadata, + participants, + createdAt: new Date(), + } + ) + } else { + Promise.all( + participants.map(async (participant) => { + const isParticipantInSiteMetadata = await SiteMetadataModel.findOne( + appDb, + { + participants: { + $elemMatch: { participant: participant.participant }, + }, + } + ) + if (!isParticipantInSiteMetadata) { + await SiteMetadataModel.upsert$addToSet( + appDb, + { study }, + { participants: participant } + ) + } else { + const updatedAttributes = Object.keys(participant).reduce( + (attributes, key) => { + attributes[`participants.$.${key}`] = participant[key] + + return attributes + }, + {} + ) + await SiteMetadataModel.upsert$Set( + appDb, + { + participants: { + $elemMatch: { participant: participant.participant }, + }, + }, + updatedAttributes + ) + } + }) + ) + } + + return res.status(200).json({ data: 'Metadata imported successfully.' }) + } catch (error) { + next(error) + } + }, + destroy: async (req, res) => { + try { + const { appDb } = req.app.locals + + await appDb.collection(collections.metadata).drop() + + return res.status(200).json({ data: 'Metadata collection restarted' }) + } catch (error) { + return res.status(400).json({ message: error.message }) + } + }, +} + +export default SiteMetadataController diff --git a/server/controllers/api/siteMetadataController/siteMetadataController.test.js b/server/controllers/api/siteMetadataController/siteMetadataController.test.js new file mode 100644 index 00000000..7f561015 --- /dev/null +++ b/server/controllers/api/siteMetadataController/siteMetadataController.test.js @@ -0,0 +1,307 @@ +import SiteMetadataController from '.' +import { + createRequest, + createResponse, + createSiteMetadata, +} from '../../../../test/fixtures' + +describe('siteMetadataController', () => { + describe(SiteMetadataController.create, () => { + describe('When new data is imported', () => { + let appDb + + beforeAll(() => { + appDb = global.MONGO_INSTANCE.db('siteMetadata') + }) + beforeEach(async () => { + await appDb.createCollection('metadata') + }) + afterEach(async () => { + await appDb.collection('metadata').drop() + }) + afterAll(async () => { + await appDb.dropDatabase() + }) + + it('creates new metadata document', async () => { + const body = createSiteMetadata({ + metadata: { + filetype: 'text/csv', + encoding: 'utf-8', + dirname: '/path/to/files', + mtime: 1234567890.0, + size: 1024, + uid: 1000, + gid: 1000, + mode: 420, + role: 'metadata', + study: 'CA', + extension: '.csv', + }, + participants: [ + { + participant: 'CA1', + Active: 4, + Consent: '2022-06-02', + study: 'CA', + }, + { + participant: 'CA2', + Active: 3, + Consent: '2022-06-02', + study: 'CA', + }, + ], + }) + const request = createRequest({ + body, + app: { locals: { appDb } }, + }) + const response = createResponse() + + await SiteMetadataController.create(request, response) + + const newDocumentCount = await appDb + .collection('metadata') + .countDocuments({ study: 'CA' }) + + expect(newDocumentCount).toEqual(1) + }) + it('appends new participant when new data is imported but site metadata is present', async () => { + const body = createSiteMetadata({ + metadata: { + filetype: 'text/csv', + encoding: 'utf-8', + dirname: '/path/to/files', + mtime: 1234567890.0, + size: 1024, + uid: 1000, + gid: 1000, + mode: 420, + role: 'metadata', + study: 'LA', + extension: '.csv', + }, + participants: [ + { + participant: 'LA3', + Active: 5, + Consent: '2022-06-02', + study: 'LA', + }, + ], + }) + const request = createRequest({ + body, + app: { locals: { appDb } }, + }) + const response = createResponse() + + await SiteMetadataController.create(request, response) + + const updatedSiteMetadata = await appDb + .collection('metadata') + .findOne({ participants: { $elemMatch: { participant: 'LA3' } } }) + + expect(updatedSiteMetadata).toBeDefined() + }) + it('updates existing participant data', async () => { + const body = createSiteMetadata({ + metadata: { + filetype: 'text/csv', + encoding: 'utf-8', + dirname: '/path/to/files', + mtime: 1234567890.0, + size: 1024, + uid: 1000, + gid: 1000, + mode: 420, + role: 'metadata', + study: 'YA', + extension: '.csv', + }, + participants: [ + { + participant: 'YA1', + Active: 4, + Consent: '2022-06-02', + study: 'YA', + }, + { + participant: 'YA2', + Active: 3, + Consent: '2022-06-02', + study: 'YA', + }, + ], + }) + const request = createRequest({ + body, + app: { locals: { appDb } }, + }) + const response = createResponse() + + await SiteMetadataController.create(request, response) + + const updatedDocs = await appDb + .collection('metadata') + .findOne({ study: 'YA' }) + + expect(updatedDocs.participants).toEqual([ + { + participant: 'YA1', + Active: 4, + Consent: new Date('2022-06-02'), + study: 'YA', + }, + { + participant: 'YA2', + Active: 3, + Consent: new Date('2022-06-02'), + study: 'YA', + }, + ]) + }) + }) + describe('When successful', () => { + it('returns a status of 200 and a success data message', async () => { + const body = createSiteMetadata({ + metadata: { + filetype: 'text/csv', + encoding: 'utf-8', + dirname: '/path/to/files', + mtime: 1234567890.0, + size: 1024, + uid: 1000, + gid: 1000, + mode: 420, + role: 'metadata', + study: 'site', + extension: '.csv', + }, + participants: [ + { + participant: 'YA1', + Active: 1, + Consent: '2022-06-02', + study: 'YA', + }, + { + participant: 'YA2', + Active: 1, + Consent: '2022-06-02', + study: 'YA', + }, + ], + }) + + const request = createRequest({ + body, + }) + const response = createResponse() + + request.app.locals.appDb.findOne.mockResolvedValueOnce(null) + request.app.locals.appDb.findOneAndUpdate.mockImplementation() + + await SiteMetadataController.create(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: 'Metadata imported successfully.', + }) + }) + }) + + describe('When unsuccessful', () => { + it('it passess error to next', async () => { + const body = createSiteMetadata({ + metadata: { + filetype: 'text/csv', + encoding: 'utf-8', + dirname: '/path/to/files', + mtime: 1234567890.0, + size: 1024, + uid: 1000, + gid: 1000, + mode: 420, + role: 'metadata', + study: 'site', + extension: '.csv', + updatedAt: new Date(), + }, + participants: [ + { + participant: 'YA1', + Active: 1, + Consent: '2022-06-02', + study: 'YA', + daysInStudy: 55, + }, + { + participant: 'YA2', + Active: 1, + Consent: '2022-06-02', + study: 'YA', + daysInStudy: 105, + }, + ], + }) + + const request = createRequest({ body }) + const response = createResponse() + const error = new Error('some error') + + request.app.locals.appDb.findOne.mockRejectedValueOnce(error) + const next = jest.fn() + await SiteMetadataController.create(request, response, next) + + expect(next).toHaveBeenCalledWith(error) + }) + }) + }) + describe(SiteMetadataController.destroy, () => { + describe('When successful', () => { + let appDb + + beforeAll(() => { + appDb = global.MONGO_INSTANCE.db('dpdata') + }) + beforeEach(async () => { + await appDb.createCollection('metadata') + }) + afterAll(async () => { + await appDb.dropDatabase() + }) + + it('removes the metadata collection', async () => { + const request = createRequest() + const response = createResponse() + + await SiteMetadataController.destroy(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: 'Metadata collection restarted', + }) + }) + }) + describe('When unsuccessful', () => { + it('returns a status of 200 and an error', async () => { + const request = createRequest() + const response = createResponse() + + request.app.locals.appDb.collection.mockImplementation(() => { + return { + drop: jest.fn().mockRejectedValueOnce(new Error('some error')), + } + }) + await SiteMetadataController.destroy(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + message: 'some error', + }) + }) + }) + }) +}) diff --git a/server/controllers/apiUsersController/apiUsersController.test.js b/server/controllers/apiUsersController/apiUsersController.test.js new file mode 100644 index 00000000..33eda3df --- /dev/null +++ b/server/controllers/apiUsersController/apiUsersController.test.js @@ -0,0 +1,45 @@ +import ApiUsersController from '.' +import { + createRequestWithUser, + createResponse, + createUser, +} from '../../../test/fixtures' + +describe('ApiUsersController', () => { + describe(ApiUsersController.index, () => { + describe('When successful', () => { + it('returns a status of 200 and a collection of user objects', async () => { + const users = [createUser({ uid: 1 }), createUser({ uid: 2 })] + const request = createRequestWithUser() + const response = createResponse() + + request.app.locals.appDb.toArray.mockResolvedValueOnce(users) + + await ApiUsersController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: users, + }) + }) + }) + + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message', async () => { + const request = createRequestWithUser() + const response = createResponse() + + request.app.locals.appDb.find.mockImplementationOnce(() => { + throw new Error('some error') + }) + + await ApiUsersController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'some error', + }) + }) + }) + }) +}) diff --git a/server/controllers/apiUsersController/index.js b/server/controllers/apiUsersController/index.js new file mode 100644 index 00000000..c090c3e7 --- /dev/null +++ b/server/controllers/apiUsersController/index.js @@ -0,0 +1,16 @@ +import UserModel from '../../models/UserModel' + +const ApiUsersController = { + index: async (req, res) => { + try { + const { appDb } = req.app.locals + const users = await UserModel.all(appDb) + + return res.status(200).json({ data: users }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, +} + +export default ApiUsersController diff --git a/server/controllers/assessmentsController/assessmentsController.test.js b/server/controllers/assessmentsController/assessmentsController.test.js new file mode 100644 index 00000000..c778f7d7 --- /dev/null +++ b/server/controllers/assessmentsController/assessmentsController.test.js @@ -0,0 +1,78 @@ +import { ObjectId } from 'mongodb' + +import assessmentsController from '.' +import { + createAssessment, + createRequest, + createResponse, +} from '../../../test/fixtures' +import { collections } from '../../utils/mongoCollections' + +describe('assessmentsController', () => { + describe('when successful', () => { + let appDb + + const [assess1, assess2, assess3, assess4] = [ + createAssessment({ name: 'assessment_1', _id: new ObjectId() }), + createAssessment({ name: 'form', _id: new ObjectId() }), + createAssessment({ name: 'assessment_2', _id: new ObjectId() }), + createAssessment({ name: 'pilfer', _id: new ObjectId() }), + ] + beforeAll(async () => { + appDb = await global.MONGO_INSTANCE.db('assessments') + + await appDb + .collection(collections.assessments) + .insertMany([assess1, assess2, assess3, assess4]) + }) + + afterAll(async () => { + await appDb.dropDatabase() + }) + + it('returns a list of all assessments', async () => { + const request = createRequest({ + app: { locals: { appDb } }, + }) + const response = createResponse() + + await assessmentsController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: [assess1, assess2, assess3, assess4], + }) + }) + + it('returns a list of assessments that match search query', async () => { + const request = createRequest({ + app: { locals: { appDb } }, + query: { search: 'f' }, + }) + const response = createResponse() + + await assessmentsController.index(request, response) + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: [assess2, assess4], + }) + }) + }) + describe('when unsuccessful', () => { + it('returns an error', async () => { + const request = createRequest() + const response = createResponse() + + request.app.locals.appDb.toArray.mockRejectedValueOnce( + new Error('This is an error') + ) + + await assessmentsController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(401) + expect(response.json).toHaveBeenCalledWith({ + error: 'This is an error', + }) + }) + }) +}) diff --git a/server/controllers/assessmentsController/index.js b/server/controllers/assessmentsController/index.js new file mode 100644 index 00000000..ae2ad401 --- /dev/null +++ b/server/controllers/assessmentsController/index.js @@ -0,0 +1,25 @@ +import AssessmentModel from '../../models/AssessmentModel' + +const assessmentsController = { + index: async (req, res) => { + try { + const { appDb } = req.app.locals + const isSearchRequested = Object.hasOwn(req.query, 'search') + const assessmentModelQuery = !isSearchRequested + ? {} + : { + name: { $regex: req.query.search, $options: 'i' }, + } + const assessmentList = await AssessmentModel.all( + appDb, + assessmentModelQuery + ) + + return res.status(200).json({ data: assessmentList }) + } catch (error) { + return res.status(401).json({ error: error.message }) + } + }, +} + +export default assessmentsController diff --git a/server/controllers/authController/authController.test.js b/server/controllers/authController/authController.test.js new file mode 100644 index 00000000..cb9b6eb2 --- /dev/null +++ b/server/controllers/authController/authController.test.js @@ -0,0 +1,257 @@ +import AuthController from '.' +import { + createRequest, + createRequestWithUser, + createResponse, + createUser, +} from '../../../test/fixtures' +import { collections } from '../../utils/mongoCollections' + +afterEach(() => { + jest.clearAllMocks() +}) +describe('AuthController', () => { + describe(AuthController.destroy, () => { + describe('When successful', () => { + it('returns a status of 200 and success data message', async () => { + const request = createRequestWithUser() + const response = createResponse() + + await AuthController.destroy(request, response, jest.fn()) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: { message: 'User is logged out' }, + }) + }) + }) + + describe('When unsuccessful', () => { + it('returns a status of 500 and an error message', async () => { + const request = createRequestWithUser() + const response = createResponse() + const next = jest.fn() + + request.logout.mockImplementationOnce(() => { + throw new Error('some error') + }) + + await AuthController.destroy(request, response, next) + + expect(response.status).toHaveBeenCalledWith(500) + expect(response.json).toHaveBeenCalledWith({ + error: 'some error', + }) + }) + }) + }) + describe(AuthController.show, () => { + describe('When successful', () => { + it('returns a status of 200 and a user object', async () => { + const request = createRequestWithUser() + const response = createResponse() + const user = createUser() + + request.app.locals.appDb.findOne.mockResolvedValueOnce(user) + + await AuthController.show(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: user, + }) + }) + }) + + describe('When unsuccessful', () => { + it('returns a status of 400 and an error', async () => { + const request = createRequestWithUser() + const response = createResponse() + + request.app.locals.appDb.findOne.mockRejectedValueOnce( + new Error('some error') + ) + + await AuthController.show(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'some error', + }) + }) + }) + }) + + describe(AuthController.update, () => { + describe('When successful', () => { + it('Resets the user password and returns a user object', async () => { + const request = createRequestWithUser({ + body: { + username: 'username', + password: 'newpass', + confirmPassword: 'newpass', + reset_key: 'reset_key', + }, + }) + const response = createResponse() + const user = createUser({ + password: 'oldpass', + reset_key: 'reset_key', + }) + const updatedUser = { + ...user, + reset_key: '', + } + + request.app.locals.appDb.findOne.mockResolvedValueOnce(user) + request.app.locals.appDb.findOneAndUpdate.mockResolvedValueOnce( + updatedUser + ) + + await AuthController.update(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: { + ...user, + reset_key: '', + }, + }) + }) + }) + + describe('When unsuccessful', () => { + it('returns a status of 400 and an error', async () => { + const request = createRequestWithUser({ + body: { + username: 'username', + password: 'newpass', + confirmPassword: 'newpass', + reset_key: 'reset_key', + }, + }) + const response = createResponse() + request.app.locals.appDb.findOne.mockRejectedValueOnce( + new Error('some error') + ) + + await AuthController.update(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ error: 'some error' }) + }) + }) + + describe('When sent non-string values', () => { + it('stringifies the value before querying the database', async () => { + const request = createRequestWithUser({ + body: { + username: { + $nin: [], + }, + password: 'newpass', + confirmPassword: 'newpass', + reset_key: { + $nin: [], + }, + }, + }) + const response = createResponse() + const mockFindOne = jest.fn().mockResolvedValueOnce(null) + request.app.locals.appDb.collection = jest + .fn() + .mockImplementation(() => ({ + findOne: mockFindOne, + })) + + await AuthController.update(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(mockFindOne).toHaveBeenCalledWith( + { + uid: '[object Object]', + reset_key: '[object Object]', + force_reset_pw: true, + }, + { + projection: { + _id: 0, + password: 0, + bad_pwd_count: 0, + lockout_time: 0, + last_logoff: 0, + last_logon: 0, + force_reset_pw: 0, + }, + } + ) + }) + }) + }) + describe(AuthController.create, () => { + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message', async () => { + const response = createResponse() + const user = createUser({ + password: 'somepassword', + confirmPassword: 'somepassword', + }) + const request = createRequest({ + body: user, + }) + + request.app.locals.appDb.findOne.mockRejectedValueOnce( + new Error('some error') + ) + + await AuthController.create(request, response, jest.fn()) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'some error', + }) + }) + }) + describe('When user has an account', () => { + let appDb + + beforeAll(async () => { + appDb = await global.MONGO_INSTANCE.db('auth') + }) + + beforeEach(async () => { + await appDb.createCollection(collections.users) + }) + afterEach(async () => { + await appDb.collection(collections.users).drop() + }) + afterAll(async () => { + await appDb.dropDatabase() + }) + + it('returns a status of 400 and an error message when user has an account', async () => { + const next = jest.fn() + const request = createRequestWithUser({ + body: { + username: 'username', + password: 'newpass', + confirmPassword: 'newpass', + }, + app: { + locals: { appDb }, + }, + }) + const response = createResponse() + const user = createUser({ uid: 'username' }) + + await appDb.collection(collections.users).insertOne(user) + await AuthController.create(request, response, next) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'User has an account', + }) + }) + }) + }) +}) diff --git a/server/controllers/authController/index.js b/server/controllers/authController/index.js new file mode 100644 index 00000000..6fb121f0 --- /dev/null +++ b/server/controllers/authController/index.js @@ -0,0 +1,142 @@ +import dayjs from 'dayjs' +import passport from 'passport' + +import RegistrationMailer from '../../mailer/RegistrationMailer' +import ConfigModel from '../../models/ConfigModel' +import UserModel from '../../models/UserModel' +import { hash } from '../../utils/crypto/hash' +import { isAccountExpired } from '../../utils/passport/helpers' +import { logout } from '../../utils/passport/logout' + +const AuthController = { + authenticate: async (req, res, next) => { + passport.authenticate( + 'local', + { session: true }, + async function (err, user) { + if (err) return next(err) + + const { uid } = user + + const { appDb } = req.app.locals + + const userInfo = await UserModel.update(appDb, uid, { + last_logon: Date.now(), + }) + const { role, account_expires } = userInfo + + if (isAccountExpired(account_expires, role)) { + logout(req, res, next) + + res.clearCookie('connect.sid') + + return res.status(401).json({ error: 'Account is expired' }) + } + req.login(user, function (err) { + if (err) { + return next(err) + } + res.json({ data: userInfo }) + }) + } + )(req, res, next) + }, + create: async (req, res) => { + try { + const { appDb } = req.app.locals + const info = req.body + + const existingUser = await UserModel.findOne(appDb, { + uid: info.username, + }) + if (existingUser) + return res.status(400).json({ error: 'User has an account' }) + + const password = info.password + const uid = info.username + const mail = info.mail + const display_name = info.fullName + const hashedPW = hash(password) + const account_expires = dayjs().add(1, 'years').format() + const configAttributes = ConfigModel.withDefaults({ + owner: uid, + readers: [uid], + }) + const configuration = await ConfigModel.create(appDb, configAttributes) + + const newUserAttributes = { + uid, + display_name, + password: hashedPW, + mail, + account_expires, + preferences: { config: configuration._id.toString() }, + } + const newUser = await UserModel.create(appDb, newUserAttributes) + const registrationMailer = new RegistrationMailer(newUser) + + await registrationMailer.sendMail() + + return res.status(200).json({ data: newUser }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, + destroy: async (req, res, next) => { + try { + logout(req, res, next) + + return res.status(200).json({ data: { message: 'User is logged out' } }) + } catch (error) { + return res.status(500).json({ error: error.message }) + } + }, + show: async (req, res) => { + try { + const { appDb } = req.app.locals + const user = await UserModel.findOne(appDb, { uid: req.user.uid }) + + return res.status(200).json({ data: user }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, + update: async (req, res) => { + try { + const { password, confirmPassword, reset_key, username } = req.body + + if (password !== confirmPassword) + return res.status(400).json({ error: 'passwords do not match' }) + + const { appDb } = req.app.locals + const encryptPassword = hash(password) + const user = await UserModel.findOne(appDb, { + uid: String(username), + reset_key: String(reset_key), + force_reset_pw: true, + }) + + if (!user) + return res.status(400).json({ + error: 'User not found or there is a problem with the reset key', + }) + + const userAttributes = { + password: encryptPassword, + reset_key: '', + force_reset_pw: false, + } + const updatedUser = await UserModel.update( + appDb, + username, + userAttributes + ) + + return res.status(200).json({ data: updatedUser }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, +} + +export default AuthController diff --git a/server/controllers/chartsController/chartsController.test.js b/server/controllers/chartsController/chartsController.test.js new file mode 100644 index 00000000..9bc41de3 --- /dev/null +++ b/server/controllers/chartsController/chartsController.test.js @@ -0,0 +1,611 @@ +import { ObjectId } from 'mongodb' + +import chartsController from '.' +import { + createRequestWithUser, + createResponse, + createChart, + createUser, + createFieldLabelValue, +} from '../../../test/fixtures' +import UserModel from '../../models/UserModel' +import { collections } from '../../utils/mongoCollections' + +describe('chartsController', () => { + describe('create', () => { + describe('When successful', () => { + let appDb + let user + + beforeAll(async () => { + user = createUser({ + uid: 'owl', + preferences: {}, + access: ['YA', 'LA', 'MA'], + }) + appDb = await global.MONGO_INSTANCE.db('chartsCreate') + + await appDb.collection(collections.users).insertOne(user) + }) + + afterAll(async () => { + await appDb.dropDatabase() + }) + it('returns a status of 200 and a chart_id', async () => { + const body = createChart( + { + title: 'Eeg Measurements', + description: 'Participant EEG Measurements', + assessment: 'eeg', + variable: 'eeg', + public: false, + owner: 'owl', + }, + [ + createFieldLabelValue({ + value: 'bar', + label: 'Bar', + color: 'red', + targetValues: { + LA: '2', + YA: '1', + MA: '2', + }, + }), + ] + ) + const request = createRequestWithUser({ + app: { locals: { appDb }, body }, + }) + const response = createResponse() + + await chartsController.create(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledTimes(1) + }) + }) + + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message', async () => { + const request = createRequestWithUser() + const response = createResponse() + + request.app.locals.appDb.insertOne.mockImplementation(() => { + throw new Error('some error') + }) + + await chartsController.create(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + message: 'some error', + }) + }) + }) + }) + + describe('index', () => { + describe('When successful', () => { + let appDb + + beforeAll(async () => { + appDb = await global.MONGO_INSTANCE.db('chartsIndex') + }) + + beforeEach(async () => { + await appDb.createCollection(collections.charts) + await appDb.createCollection(collections.users) + }) + + afterEach(async () => { + await appDb.collection(collections.users).drop() + await appDb.collection(collections.charts).drop() + }) + + afterAll(async () => { + await appDb.dropDatabase() + }) + + it('returns a list of charts in order of user favorite, title, alongside a status of 200', async () => { + const [chart1, chart2, chart3] = [ + createChart({ + _id: new ObjectId(), + title: 'LES', + description: 'Participant EEG Measurements', + assessment: 'EEG Quick', + variable: 'Rating', + public: false, + owner: 'owl', + }), + createChart({ + _id: new ObjectId(), + title: 'Eeg Measurements', + description: 'Participant EEG Measurements', + assessment: 'Foo', + variable: 'Rating', + public: false, + owner: 'owl', + }), + createChart( + { + _id: new ObjectId(), + title: 'Eeg Measurements', + description: 'Participant EEG Measurements', + assessment: 'eeg', + variable: 'eeg', + public: false, + owner: 'owl', + }, + [ + createFieldLabelValue({ + value: 'bar', + label: 'Bar', + color: 'red', + targetValues: { + LA: '2', + YA: '1', + MA: '2', + }, + }), + ] + ), + ] + const user = createUser({ + uid: 'owl', + favoriteCharts: [chart3._id.toString()], + }) + await appDb.collection(collections.users).insertOne(user) + await appDb + .collection(collections.charts) + .insertMany([chart1, chart2, chart3]) + + const request = createRequestWithUser( + { + app: { locals: { appDb } }, + query: { sortBy: 'title', sortDirection: 'ASC' }, + }, + await UserModel.findOne(appDb, { uid: user.uid }) + ) + + const response = createResponse() + const { _id, icon: _icon, ...restOfUser } = user + + await chartsController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: [ + { + ...chart3, + chartOwner: restOfUser, + favorite: true, + chart_id: chart3._id.toString(), + }, + { + ...chart2, + chartOwner: restOfUser, + favorite: false, + chart_id: chart2._id.toString(), + }, + { + ...chart1, + chartOwner: restOfUser, + favorite: false, + chart_id: chart1._id.toString(), + }, + ], + }) + }) + + it('returns a list of charts that match the search query, the results are sorted by favorites first then title', async () => { + const [chart1, chart2, chart3] = [ + createChart({ + _id: new ObjectId(), + title: 'recent chart', + assessment: 'EEG', + variable: 'Rating', + owner: 'owl', + }), + createChart({ + _id: new ObjectId(), + assessment: 'EEG Drive', + variable: 'drtive', + owner: 'owl', + title: 'all charts', + }), + createChart({ + _id: new ObjectId(), + title: 'recent chart', + assessment: 'Foo', + variable: 'Rating', + owner: 'anotherUser', + sharedWith: ['owl'], + }), + ] + const { user, anotherUser } = { + user: createUser({ + uid: 'owl', + favoriteCharts: [chart3._id.toString()], + }), + anotherUser: createUser({ + uid: 'anotherUser', + }), + } + const { _id, icon: _icon, ...restOfUser } = user + const { _id: _x, icon: _icon2, ...restOfanotherUser } = anotherUser + + await appDb + .collection(collections.users) + .insertMany([user, anotherUser]) + await appDb + .collection(collections.charts) + .insertMany([chart1, chart2, chart3]) + + const request = createRequestWithUser( + { + app: { locals: { appDb } }, + query: { search: 'recent', sortBy: 'title', sortDirection: 'ASC' }, + }, + await UserModel.findOne(appDb, { uid: user.uid }) + ) + const response = createResponse() + + await chartsController.index(request, response) + + expect(response.json).toHaveBeenCalledWith({ + data: [ + { + ...chart3, + chartOwner: restOfanotherUser, + favorite: true, + chart_id: chart3._id.toString(), + }, + { + ...chart1, + chartOwner: restOfUser, + favorite: false, + chart_id: chart1._id.toString(), + }, + ], + }) + }) + }) + + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message', async () => { + const request = createRequestWithUser() + const response = createResponse() + + request.app.locals.appDb.findOne.mockRejectedValueOnce( + new Error('Rejected error message') + ) + + await chartsController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'Rejected error message', + }) + }) + }) + }) + + describe('destroy', () => { + describe('When successful', () => { + let appDb + let user + const chart_id = new ObjectId() + + beforeAll(async () => { + user = createUser({ + uid: 'owl', + preferences: {}, + access: ['YA', 'LA', 'MA'], + }) + appDb = await global.MONGO_INSTANCE.db('chartsDestroy') + + await appDb.collection(collections.charts).insertOne( + createChart( + { + _id: chart_id, + title: 'Eeg Measurements', + description: 'Participant EEG Measurements', + assessment: 'eeg', + variable: 'eeg', + public: false, + owner: 'owl', + }, + [ + createFieldLabelValue({ + value: 'bar', + label: 'Bar', + color: 'red', + targetValues: { + LA: '2', + YA: '1', + MA: '2', + }, + }), + ] + ) + ) + await appDb.collection(collections.users).insertOne(user) + }) + + afterAll(async () => { + await appDb.dropDatabase() + }) + it('returns a status of 204', async () => { + const request = createRequestWithUser( + { + params: { chart_id: chart_id.toString() }, + app: { locals: { appDb } }, + }, + { uid: 'owl' } + ) + const response = createResponse() + + await chartsController.destroy(request, response) + + expect(response.status).toHaveBeenCalledWith(204) + }) + }) + + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message', async () => { + const params = { chart_id: 'some-id' } + const request = createRequestWithUser(params, { uid: 'user-id' }) + const response = createResponse() + + request.app.locals.appDb.findOne.mockResolvedValueOnce({ + owner: 'user-id', + }) + request.app.locals.appDb.deleteOne.mockRejectedValueOnce( + new Error('Some error') + ) + + await chartsController.destroy(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'Some error', + }) + }) + }) + }) + + describe('show', () => { + describe('When successful', () => { + let appDb + let user + const chart_id = new ObjectId() + + beforeAll(async () => { + user = createUser({ + uid: 'owl', + preferences: {}, + access: ['YA', 'LA', 'MA'], + }) + appDb = await global.MONGO_INSTANCE.db('chartsShow') + + await appDb.collection(collections.charts).insertOne( + createChart( + { + _id: chart_id, + title: 'Eeg Measurements', + description: 'Participant EEG Measurements', + assessment: 'eeg', + variable: 'eeg', + public: false, + owner: 'owl', + }, + [ + createFieldLabelValue({ + value: 'bar', + label: 'Bar', + color: 'red', + targetValues: { + LA: '2', + YA: '1', + MA: '2', + }, + }), + ] + ) + ) + await appDb.collection(collections.users).insertOne(user) + }) + + afterAll(async () => { + await appDb.dropDatabase() + }) + it('returns a status of 200 and a chart', async () => { + const userOverrides = { access: ['YA', 'CA'], uid: 'owl' } + const request = createRequestWithUser( + { + app: { locals: { appDb } }, + params: { chart_id: chart_id.toString() }, + }, + userOverrides + ) + const response = createResponse() + + await chartsController.show(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: { + _id: chart_id, + assessment: 'eeg', + description: 'Participant EEG Measurements', + fieldLabelValueMap: [ + { + color: '#e2860a', + label: 'Foo', + targetValues: { + CA: '', + LA: '3', + MA: '3', + YA: '3', + }, + value: 'foo', + }, + { + color: 'red', + label: 'Bar', + targetValues: { + CA: '', + LA: '2', + MA: '2', + YA: '1', + }, + value: 'bar', + }, + ], + owner: 'owl', + public: false, + title: 'Eeg Measurements', + variable: 'eeg', + }, + }) + }) + }) + describe('When unsucessful', () => { + it('returns a status of 400 and an error message', async () => { + const params = { chart_id: 'chart-id' } + const request = createRequestWithUser(params) + const response = createResponse() + + request.app.locals.appDb.findOne.mockRejectedValueOnce( + new Error('some error') + ) + + await chartsController.show(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'some error', + }) + }) + }) + }) + + describe('update', () => { + describe('When successful', () => { + let appDb + let user + const chart_id = new ObjectId() + + beforeAll(async () => { + user = createUser({ + uid: 'owl', + preferences: {}, + access: ['YA', 'LA', 'MA'], + }) + appDb = await global.MONGO_INSTANCE.db('chartsUpdate') + + await appDb.collection(collections.charts).insertOne( + createChart( + { + _id: chart_id, + title: 'Eeg Measurements', + description: 'Participant EEG Measurements', + assessment: 'eeg', + variable: 'eeg', + public: false, + owner: 'owl', + }, + [ + createFieldLabelValue({ + value: 'bar', + label: 'Bar', + color: 'red', + targetValues: { + LA: '2', + YA: '1', + MA: '2', + }, + }), + ] + ) + ) + await appDb.collection(collections.users).insertOne(user) + }) + + afterAll(async () => { + await appDb.dropDatabase() + }) + it('returns a status of 200 and an updated chart', async () => { + const params = { chart_id: chart_id.toString() } + const body = createChart( + { + title: 'New Title', + description: 'Participant EEG Measurements', + assessment: 'eeg', + variable: 'eeg', + public: false, + owner: 'owl', + }, + [ + createFieldLabelValue({ + value: 'bar', + label: 'Bar', + color: 'red', + targetValues: { + LA: '2', + YA: '1', + MA: '2', + }, + }), + ] + ) + const request = createRequestWithUser({ + app: { locals: { appDb } }, + params, + body, + }) + const response = createResponse() + + await chartsController.update(request, response) + const updatedChart = await appDb + .collection(collections.charts) + .findOne({ + _id: chart_id, + }) + + expect(response.status).toHaveBeenCalledWith(200) + expect(updatedChart.title).toEqual('New Title') + }) + }) + + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message', async () => { + const params = { chart_id: new ObjectId().toString() } + const body = { + title: 'New title', + variable: 'Rating', + assessment: 'EEGquick', + description: 'EEG Rating', + public: false, + } + const request = createRequestWithUser({ + params, + body, + }) + const response = createResponse() + + request.app.locals.appDb.findOneAndUpdate.mockRejectedValueOnce( + new Error('Chart not found error') + ) + + await chartsController.update(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'Chart not found error', + }) + }) + }) + }) +}) diff --git a/server/controllers/chartsController/index.js b/server/controllers/chartsController/index.js new file mode 100644 index 00000000..58799365 --- /dev/null +++ b/server/controllers/chartsController/index.js @@ -0,0 +1,147 @@ +import { ObjectId } from 'mongodb' + +import ChartsModel from '../../models/ChartsModel' +import UserModel, { userMongoProjection } from '../../models/UserModel' +import { defaultTargetValueMap } from '../../utils/defaultTargetValueMap' + +const chartsController = { + create: async (req, res) => { + try { + const { + fieldLabelValueMap, + title, + variable, + assessment, + description, + public: isPublic, + } = req.body + const { appDb } = req.app.locals + + const { insertedId } = await ChartsModel.create(appDb, { + title, + variable, + assessment, + description, + fieldLabelValueMap, + public: isPublic, + owner: req.user.uid, + }) + + return res.status(200).json({ data: { chart_id: insertedId } }) + } catch (error) { + return res.status(400).json({ message: error.message }) + } + }, + index: async (req, res) => { + try { + const chartList = [] + const { appDb } = req.app.locals + const parsedQueryParams = Object.keys(req.query).length + ? req.query + : undefined + + const currentUser = await UserModel.findOne(appDb, { uid: req.user.uid }) + const chartListCursor = await ChartsModel.all( + appDb, + currentUser, + parsedQueryParams + ) + + while (await chartListCursor.hasNext()) { + const chart = await chartListCursor.next() + + chart.chartOwner = await UserModel.findOne( + appDb, + { uid: chart.owner }, + { ...userMongoProjection, icon: 0 } + ) + + chartList.push(chart) + } + + return res.status(200).json({ data: chartList }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, + destroy: async (req, res) => { + try { + const { chart_id } = req.params + const { appDb } = req.app.locals + const { owner } = await ChartsModel.show(appDb, { + _id: new ObjectId(chart_id), + }) + + if (owner !== req.user.uid) + return res + .status(422) + .json({ message: 'Only the owner can delete a chart' }) + + await ChartsModel.destroy(appDb, chart_id) + + return res.status(204).end() + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, + show: async (req, res) => { + try { + const { appDb } = req.app.locals + const { chart_id } = req.params + const { access } = req.user + const chart = await ChartsModel.show(appDb, { + _id: new ObjectId(chart_id), + owner: req.user.uid, + }) + + if (!chart) return res.status(400).json({ error: 'Chart not found.' }) + + const targetValuesMap = defaultTargetValueMap(access) + chart.fieldLabelValueMap = chart.fieldLabelValueMap.map((fieldValue) => { + const updateTargetValues = { + ...targetValuesMap, + ...fieldValue.targetValues, + } + fieldValue.targetValues = updateTargetValues + + return fieldValue + }) + + return res.status(200).json({ data: chart }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, + update: async (req, res) => { + try { + const { appDb } = req.app.locals + const { chart_id } = req.params + const { + title, + variable, + assessment, + description, + fieldLabelValueMap, + public: isPublic, + } = req.body + const value = await ChartsModel.update( + appDb, + { _id: new ObjectId(chart_id) }, + { + title, + variable, + assessment, + description, + fieldLabelValueMap, + public: isPublic, + } + ) + + return res.status(200).json({ data: value }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, +} + +export default chartsController diff --git a/server/controllers/chartsDataController/chartsDataController.test.js b/server/controllers/chartsDataController/chartsDataController.test.js new file mode 100644 index 00000000..d8bec897 --- /dev/null +++ b/server/controllers/chartsDataController/chartsDataController.test.js @@ -0,0 +1,213 @@ +import { ObjectId } from 'mongodb' + +import chartsDataController from '.' +import { + createChart, + createRequestWithUser, + createResponse, + createUser, + createFieldLabelValue, +} from '../../../test/fixtures' +import { + chartsDataFilterResponse, + chartsDataInitialResponse, + chartsDataSuccessResponse, + dayDataAssessments, +} from '../../../test/testUtils' +import { collections } from '../../utils/mongoCollections' + +describe('chartsDataController', () => { + describe(chartsDataController.show, () => { + describe('when successful', () => { + let appDb + let user + let chart_id + + beforeAll(async () => { + user = createUser({ + uid: 'owl', + preferences: {}, + access: ['YA', 'LA', 'MA'], + }) + chart_id = new ObjectId() + appDb = await global.MONGO_INSTANCE.db('chartsData') + + await appDb.collection(collections.charts).insertOne( + createChart( + { + _id: chart_id, + title: 'Eeg Measurements', + description: 'Participant EEG Measurements', + assessment: 'eeg', + variable: 'eeg', + public: false, + owner: 'owl', + }, + [ + createFieldLabelValue({ + value: 'bar', + label: 'Bar', + color: 'red', + targetValues: { + LA: '2', + YA: '1', + MA: '2', + }, + }), + ] + ) + ) + await appDb.collection(collections.users).insertOne(user) + await appDb + .collection(collections.assessmentDayData) + .insertMany(dayDataAssessments) + }) + + afterAll(async () => { + await appDb.dropDatabase() + }) + + test('When all filters are deselected, create a graph object with assessment data counts of a specific variable, assessment value combination', async () => { + const request = createRequestWithUser( + { + app: { locals: { appDb } }, + params: { chart_id: chart_id.toString() }, + query: { + filters: { + chrcrit_part: { + HC: { label: 'HC', value: '0' }, + CHR: { label: 'CHR', value: '0' }, + Missing: { label: 'Missing', value: '0' }, + }, + sex_at_birth: { + Male: { label: 'Male', value: '0' }, + Female: { label: 'Female', value: '0' }, + Missing: { label: 'Missing', value: '0' }, + }, + sites: { + YA: { label: 'YA', value: '1' }, + LA: { label: 'LA', value: '1' }, + MA: { label: 'MA', value: '1' }, + }, + recruitment_status: { + 'Not recruited': { + label: 'Not Recruited', + value: '0', + }, + Recruited: { + label: 'Recruited', + value: '0', + }, + }, + networks: { + PRESCIENT: { label: 'PRESCIENT', value: '0' }, + ProNET: { label: 'ProNET', value: '0' }, + }, + }, + }, + }, + user + ) + const response = createResponse() + + await chartsDataController.show(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: chartsDataSuccessResponse({ + chart_id: chart_id.toString(), + }), + }) + }) + + test('When data is requested for the first time, the initial filters are applied to the data', async () => { + const request = createRequestWithUser( + { + app: { locals: { appDb } }, + params: { chart_id: chart_id.toString() }, + }, + user + ) + const response = createResponse() + + await chartsDataController.show(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: chartsDataInitialResponse({ + chart_id: chart_id.toString(), + }), + }) + }) + it('returns data when a user selects a specific filter', async () => { + const request = createRequestWithUser( + { + app: { locals: { appDb } }, + params: { chart_id: chart_id.toString() }, + query: { + filters: { + chrcrit_part: { + HC: { label: 'HC', value: '0' }, + CHR: { label: 'CHR', value: '0' }, + Missing: { label: 'Missing', value: '0' }, + }, + recruitment_status: { + 'Not recruited': { + label: 'Not Recruited', + value: '1', + }, + Recruited: { + label: 'Recruited', + value: '0', + }, + }, + sex_at_birth: { + Male: { label: 'Male', value: '1' }, + Female: { label: 'Female', value: '0' }, + Missing: { label: 'Missing', value: '0' }, + }, + sites: { + YA: { label: 'YA', value: '1' }, + LA: { label: 'LA', value: '1' }, + MA: { label: 'MA', value: '1' }, + }, + networks: { + PRESCIENT: { label: 'PRESCIENT', value: '0' }, + ProNET: { label: 'ProNET', value: '0' }, + }, + }, + }, + }, + user + ) + const response = createResponse() + + await chartsDataController.show(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: chartsDataFilterResponse({ + chart_id: chart_id.toString(), + }), + }) + }) + }) + describe('when unsuccessful', () => { + it('returns a status of 500 and a message', async () => { + const request = createRequestWithUser() + const response = createResponse() + + request.app.locals.appDb.findOne.mockRejectedValueOnce( + new Error('This is an error') + ) + + await chartsDataController.show(request, response) + + expect(response.status).toHaveBeenCalledWith(500) + expect(response.send).toHaveBeenCalledWith({ + message: 'This is an error', + }) + }) + }) + }) +}) diff --git a/server/controllers/chartsDataController/index.js b/server/controllers/chartsDataController/index.js new file mode 100644 index 00000000..96f62b6f --- /dev/null +++ b/server/controllers/chartsDataController/index.js @@ -0,0 +1,78 @@ +import { ObjectId } from 'mongodb' + +import StudiesModel from '../../models/StudiesModel' +import UserModel from '../../models/UserModel' +import BarChartService from '../../services/BarChartService' +import BarChartTableService from '../../services/BarChartTableService' +import CsvService from '../../services/CSVService' +import FiltersService from '../../services/FiltersService' +import { collections } from '../../utils/mongoCollections' + +const show = async (req, res, next) => { + try { + const { appDb } = req.app.locals + const user = await UserModel.findOne(appDb, { uid: req.user.uid }) + const userSites = StudiesModel.sanitizeAndSort(user.access) + const { chart_id } = req.params + const filtersService = new FiltersService(req.query.filters, userSites) + const filters = filtersService.filters + const chart = await appDb.collection(collections.charts).findOne({ + _id: new ObjectId(chart_id), + }) + const chartService = new BarChartService(appDb, chart, filtersService) + const { processedDataBySite, studyTotals, labelMap } = + await chartService.createChart() + const dataBySite = + processedDataBySite.size > 0 + ? Array.from(processedDataBySite.values()) + : [] + const labels = Array.from(labelMap.values()) + const chartTableService = new BarChartTableService(dataBySite, labels) + const websiteTable = chartTableService.websiteTableData() + const chartOwner = await appDb.collection(collections.users).findOne( + { uid: chart.owner }, + { + projection: { + _id: 0, + display_name: 1, + icon: 1, + uid: 1, + }, + } + ) + + if (req.headers['content-type'] === 'text/csv') { + res.header('Content-Type', 'text/csv') + + const csvTableData = chartTableService.csvTableData() + const csvService = new CsvService(csvTableData) + const csvStream = csvService.toReadableStream().pipe(res) + csvStream.on('error', (err) => next(err)) + csvStream.on('end', () => res.end()) + + return res.send() + } + + const graph = { + chart_id, + dataBySite, + labels, + title: chart.title, + description: chart.description, + legend: chartService.legend(), + studyTotals, + filters, + chartOwner, + graphTable: websiteTable, + userSites, + lastModified: chart.updatedAt || '', + } + return res.status(200).json({ data: graph }) + } catch (err) { + return res.status(500).send({ message: err.message }) + } +} + +export default { + show, +} diff --git a/server/controllers/chartsDuplicateController/chartsDuplicateController.test.js b/server/controllers/chartsDuplicateController/chartsDuplicateController.test.js new file mode 100644 index 00000000..a26cb793 --- /dev/null +++ b/server/controllers/chartsDuplicateController/chartsDuplicateController.test.js @@ -0,0 +1,86 @@ +import { ObjectId } from 'mongodb' + +import chartsDuplicateController from '.' +import { + createChart, + createRequestWithUser, + createResponse, + createFieldLabelValue, +} from '../../../test/fixtures' +import { collections } from '../../utils/mongoCollections' + +describe('chartsDuplicateController', () => { + describe('create', () => { + describe('When successful', () => { + let appDb + const chart = createChart( + { + _id: new ObjectId(), + title: 'Eeg Measurements', + description: 'Participant EEG Measurements', + assessment: 'eeg', + variable: 'eeg', + public: false, + owner: 'owl', + }, + [ + createFieldLabelValue({ + value: 'bar', + label: 'Bar', + color: 'red', + targetValues: { + LA: '2', + YA: '1', + MA: '2', + }, + }), + ] + ) + + beforeAll(async () => { + appDb = await global.MONGO_INSTANCE.db('chartsDuplicate') + + await appDb.collection(collections.charts).insertOne(chart) + }) + + afterAll(async () => { + await appDb.dropDatabase() + }) + it('returns status of 200 and the new chart id', async () => { + const body = { chart_id: chart._id.toString() } + const request = createRequestWithUser({ + body, + app: { locals: { appDb } }, + }) + const response = createResponse() + + await chartsDuplicateController.create(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledTimes(1) + }) + }) + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message', async () => { + const sourceChart = new ObjectId().toString() + const body = { chart_id: sourceChart } + const request = createRequestWithUser(body) + const response = createResponse() + + request.app.locals.appDb.findOne.mockResolvedValueOnce({ + _id: sourceChart, + }) + request.app.locals.appDb.insertOne.mockRejectedValueOnce( + new Error('error message') + ) + + await chartsDuplicateController.create(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'error message', + }) + }) + }) + }) +}) diff --git a/server/controllers/chartsDuplicateController/index.js b/server/controllers/chartsDuplicateController/index.js new file mode 100644 index 00000000..8b79acaf --- /dev/null +++ b/server/controllers/chartsDuplicateController/index.js @@ -0,0 +1,28 @@ +import { ObjectId } from 'mongodb' + +import ChartsModel from '../../models/ChartsModel' + +const chartsDuplicateController = { + create: async (req, res) => { + try { + const { appDb } = req.app.locals + const { chart_id } = req.body + const { _id, ...rest } = await ChartsModel.show(appDb, { + _id: new ObjectId(chart_id), + }) + const { insertedId } = await ChartsModel.create(appDb, { + ...rest, + title: `${rest.title} (copy)`, + owner: req.user.uid, + public: false, + sharedWith: [], + }) + + return res.status(200).json({ data: insertedId }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, +} + +export default chartsDuplicateController diff --git a/server/controllers/chartsShareController/chartsShareController.test.js b/server/controllers/chartsShareController/chartsShareController.test.js new file mode 100644 index 00000000..607c382e --- /dev/null +++ b/server/controllers/chartsShareController/chartsShareController.test.js @@ -0,0 +1,97 @@ +import { ObjectId } from 'mongodb' + +import chartsShareController from '.' +import { + createChart, + createRequestWithUser, + createResponse, + createFieldLabelValue, +} from '../../../test/fixtures' +import { collections } from '../../utils/mongoCollections' + +describe('chartsShareController', () => { + describe('create', () => { + describe('When successful', () => { + let appDb + const chart = createChart( + { + _id: new ObjectId(), + title: 'Eeg Measurements', + description: 'Participant EEG Measurements', + assessment: 'eeg', + variable: 'eeg', + public: false, + owner: 'owl', + }, + [ + createFieldLabelValue({ + value: 'bar', + label: 'Bar', + color: 'red', + targetValues: { + LA: '2', + YA: '1', + MA: '2', + }, + }), + ] + ) + + beforeAll(() => { + appDb = global.MONGO_INSTANCE.db('chartsShare') + }) + beforeEach(async () => { + await appDb.collection(collections.charts).insertOne(chart) + }) + afterEach(async () => { + await appDb.collection('charts').drop() + }) + afterAll(async () => { + await appDb.dropDatabase() + }) + + it('returns status of 200 and the new chart id', async () => { + const sharedWith = ['eagle'] + const body = { sharedWith } + const params = { chart_id: chart._id.toString() } + const request = createRequestWithUser( + { body, params, app: { locals: { appDb } } }, + { uid: 'owl' } + ) + const response = createResponse() + + await chartsShareController.create(request, response) + + const updatedChart = await appDb + .collection(collections.charts) + .findOne({ _id: chart._id }) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: updatedChart, + }) + }) + }) + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message', async () => { + const sourceChart = new ObjectId().toString() + const sharedWith = ['owl', 'eagle'] + const body = { sharedWith } + const params = { chart_id: sourceChart } + const request = createRequestWithUser({ body, params }) + const response = createResponse() + + request.app.locals.appDb.findOneAndUpdate.mockRejectedValueOnce( + new Error('update error') + ) + + await chartsShareController.create(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'Chart could not be shared', + }) + }) + }) + }) +}) diff --git a/server/controllers/chartsShareController/index.js b/server/controllers/chartsShareController/index.js new file mode 100644 index 00000000..579e18e1 --- /dev/null +++ b/server/controllers/chartsShareController/index.js @@ -0,0 +1,26 @@ +import { ObjectId } from 'mongodb' + +import ChartsModel from '../../models/ChartsModel' + +const chartsShareController = { + create: async (req, res) => { + try { + const { chart_id } = req.params + const { appDb } = req.app.locals + const { sharedWith } = req.body + const data = await ChartsModel.update( + appDb, + { _id: new ObjectId(chart_id) }, + { + sharedWith, + } + ) + + return res.status(200).json({ data }) + } catch { + return res.status(400).json({ error: 'Chart could not be shared' }) + } + }, +} + +export default chartsShareController diff --git a/server/controllers/configurationsController/configurationsController.test.js b/server/controllers/configurationsController/configurationsController.test.js new file mode 100644 index 00000000..754c24cd --- /dev/null +++ b/server/controllers/configurationsController/configurationsController.test.js @@ -0,0 +1,297 @@ +import { ObjectId } from 'mongodb' + +import ConfigurationsController from '.' +import { + createRequestWithUser, + createResponse, + createConfiguration, + createUser, +} from '../../../test/fixtures' +import { collections } from '../../utils/mongoCollections' + +describe('ConfigurationsController', () => { + describe(ConfigurationsController.create, () => { + const newConfiguration = { body: { name: 'new matrix', owner: 'owl' } } + + describe('When successful', () => { + const request = createRequestWithUser(newConfiguration) + const response = createResponse() + + it('sends a status of 200 with a data property when successful', async () => { + const insertedConfiguration = createConfiguration() + + request.app.locals.appDb.insertOne.mockResolvedValueOnce({ + insertedCount: 1, + insertedId: 'eagle', + }) + request.app.locals.appDb.findOne.mockResolvedValueOnce( + insertedConfiguration + ) + + await ConfigurationsController.create(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: insertedConfiguration, + }) + }) + }) + + describe('When unsuccessful', () => { + it('sends a status of 400 with a message when database there is an error', async () => { + const request = createRequestWithUser(newConfiguration) + const response = createResponse() + + request.app.locals.appDb.insertOne.mockRejectedValueOnce( + new Error('Rejected error message') + ) + + await ConfigurationsController.create(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'Rejected error message', + }) + }) + }) + }) + + describe(ConfigurationsController.update, () => { + const configAttributes = { body: { name: 'new matrix', owner: 'owl' } } + + describe('When successful', () => { + it('sends a status of 200 and with a data payload', async () => { + const request = createRequestWithUser(configAttributes) + const response = createResponse() + const updatedConfiguration = createConfiguration({ + owner: 'owl', + type: 'new matrix ', + }) + + request.app.locals.appDb.findOneAndUpdate.mockResolvedValueOnce( + updatedConfiguration + ) + + await ConfigurationsController.update(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: updatedConfiguration, + }) + }) + }) + + describe('When unsuccessful', () => { + it('sends a status of 422 with a message when database there is an error', async () => { + const request = createRequestWithUser(configAttributes) + const response = createResponse() + + request.app.locals.appDb.findOneAndUpdate.mockRejectedValueOnce( + new Error('mocked error') + ) + + await ConfigurationsController.update(request, response) + + expect(response.status).toHaveBeenCalledWith(422) + expect(response.json).toHaveBeenCalledWith({ + error: 'mocked error', + }) + }) + }) + }) + + describe(ConfigurationsController.index, () => { + const params = { uid: 'owl' } + + describe('When successful', () => { + let appDb + let user + const [activeConfig, draftConfig, activeConfig2, legacyConfiguration] = [ + createConfiguration({ _id: new ObjectId() }), + createConfiguration({ _id: new ObjectId(), status: 0 }), + createConfiguration({ + _id: new ObjectId(), + readers: ['owl', 'eagle'], + owner: 'eagle', + }), + { + _id: new ObjectId(), + owner: 'eagle', + config: {}, + type: 'matrix', + created: 'Mon, 12 June 2023', + readers: ['owl', 'eagle'], + }, + ] + beforeAll(async () => { + user = createUser({ + uid: 'owl', + preferences: {}, + access: ['YA', 'LA', 'MA'], + display_name: 'Owl Owlson', + }) + const secondUser = createUser({ + uid: 'eagle', + preferences: {}, + access: ['YA', 'LA', 'MA'], + display_name: 'Eagle Eagleson', + }) + + appDb = await global.MONGO_INSTANCE.db('configData') + + await appDb + .collection(collections.configs) + .insertMany([ + activeConfig, + draftConfig, + activeConfig2, + legacyConfiguration, + ]) + await appDb.collection(collections.users).insertMany([user, secondUser]) + }) + + afterAll(async () => { + await appDb.dropDatabase() + }) + + it('returns a status of 200 and an array of all configurations', async () => { + const result = [ + createConfiguration({ + ...activeConfig, + owner_display_name: 'Owl Owlson', + }), + createConfiguration({ + ...draftConfig, + owner_display_name: 'Owl Owlson', + }), + createConfiguration({ + ...activeConfig2, + owner_display_name: 'Eagle Eagleson', + }), + { + ...legacyConfiguration, + owner_display_name: 'Eagle Eagleson', + }, + ] + const request = createRequestWithUser({ + app: { locals: { appDb } }, + params, + user, + }) + const response = createResponse() + + await ConfigurationsController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: result, + }) + }) + + it('returns a status of 200 and an array of only published/active configurations', async () => { + const result = [ + createConfiguration({ + ...activeConfig, + owner_display_name: 'Owl Owlson', + }), + createConfiguration({ + ...activeConfig2, + owner_display_name: 'Eagle Eagleson', + }), + { + ...legacyConfiguration, + owner_display_name: 'Eagle Eagleson', + }, + ] + const request = createRequestWithUser({ + app: { locals: { appDb } }, + params, + query: { status: 'active' }, + user, + }) + const response = createResponse() + + await ConfigurationsController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: result, + }) + }) + }) + }) + + describe(ConfigurationsController.destroy, () => { + const params = { config_id: 'matrix-config' } + + describe('When successful', () => { + it('returns a status of 200 and a json with a data property', async () => { + const request = createRequestWithUser(params) + const response = createResponse() + + request.app.locals.appDb.deleteOne.mockResolvedValueOnce({ + deletedCount: 1, + }) + + await ConfigurationsController.destroy(request, response) + + expect(response.status).toHaveBeenCalledWith(204) + }) + }) + + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message property when there is an error', async () => { + const request = createRequestWithUser(params) + const response = createResponse() + + request.app.locals.appDb.deleteOne.mockRejectedValueOnce( + new Error('destroy error') + ) + + await ConfigurationsController.destroy(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'destroy error', + }) + }) + }) + }) + describe(ConfigurationsController.findOne, () => { + describe('When successful', () => { + it('sends a status of 200 with a data property when successful', async () => { + const config = createConfiguration() + const params = { config_id: '1' } + const request = createRequestWithUser(params) + const response = createResponse() + + request.app.locals.appDb.findOne.mockResolvedValueOnce(config) + + await ConfigurationsController.findOne(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: config, + }) + }) + }) + + describe('When unsuccessful', () => { + it('sends a status of 400 with a message when database there is an error', async () => { + const request = createRequestWithUser() + const response = createResponse() + + request.app.locals.appDb.findOne.mockRejectedValueOnce( + new Error('Rejected error message') + ) + + await ConfigurationsController.findOne(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'Rejected error message', + }) + }) + }) + }) +}) diff --git a/server/controllers/configurationsController/index.js b/server/controllers/configurationsController/index.js new file mode 100644 index 00000000..2f72de8c --- /dev/null +++ b/server/controllers/configurationsController/index.js @@ -0,0 +1,105 @@ +import { ObjectId } from 'mongodb' + +import ConfigModel from '../../models/ConfigModel' +import UserModel from '../../models/UserModel' + +const ConfigurationsController = { + create: async (req, res) => { + try { + const { appDb } = req.app.locals + const newConfiguration = await ConfigModel.create(appDb, { + ...req.body, + createdAt: new Date(), + updatedAt: new Date(), + }) + + return res.status(200).json({ data: newConfiguration }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, + destroy: async (req, res) => { + try { + const { appDb } = req.app.locals + const { config_id } = req.params + await ConfigModel.destroy(appDb, config_id) + + return res.status(204).end() + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, + findOne: async (req, res) => { + try { + const { appDb } = req.app.locals + const { config_id } = req.params + const currentConfig = await ConfigModel.findOne(appDb, { + _id: new ObjectId(config_id), + }) + return res.status(200).json({ data: currentConfig }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, + update: async (req, res) => { + try { + const { appDb } = req.app.locals + const { config_id } = req.params + const updatedConfiguration = await ConfigModel.update(appDb, config_id, { + ...req.body, + updatedAt: new Date(), + }) + + return res.status(200).json({ data: updatedConfiguration }) + } catch (error) { + return res.status(422).json({ error: error.message }) + } + }, + index: async (req, res) => { + const cachedUsers = new Map() + const dataSet = [] + const { appDb } = req.app.locals + const { uid } = req.params + const isActive = + Object.hasOwn(req.query, 'status') && req.query.status === 'active' + const streamConfigurations = isActive + ? await ConfigModel.active(appDb, uid) + : await ConfigModel.all(appDb, uid) + + streamConfigurations.on('data', async (config) => { + streamConfigurations.pause() + + const isUserCached = cachedUsers.has(config.owner) + + if (isUserCached) { + const configOwner = cachedUsers.get(config.owner) + + dataSet.push({ ...config, owner_display_name: configOwner }) + } else { + const configOwner = await UserModel.findOne( + appDb, + { uid: config.owner }, + { display_name: 1 } + ) + + cachedUsers.set(config.owner, configOwner.display_name) + dataSet.push({ + ...config, + owner_display_name: configOwner.display_name, + }) + } + + streamConfigurations.resume() + }) + + await new Promise((resolve, reject) => { + streamConfigurations.on('end', () => resolve()) + + streamConfigurations.on('error', (err) => reject(err)) + }) + + return res.status(200).json({ data: dataSet }) + }, +} + +export default ConfigurationsController diff --git a/server/controllers/dashboardController/dashboardController.test.js b/server/controllers/dashboardController/dashboardController.test.js new file mode 100644 index 00000000..3a31aecc --- /dev/null +++ b/server/controllers/dashboardController/dashboardController.test.js @@ -0,0 +1,213 @@ +import { ObjectId } from 'mongodb' + +import DashboardsController from '.' +import { + createConfiguration, + createRequestWithUser, + createResponse, + createUser, + createAnalysisConfig, + createParticipantDayData, +} from '../../../test/fixtures' +import { collections } from '../../utils/mongoCollections' + +describe('Dashboard Controller', () => { + describe(DashboardsController.show, () => { + describe('When successful', () => { + let appDb + let user + const configAnalysisData = [ + createAnalysisConfig({ + label: 'Jump', + analysis: 'jump_of', + variable: 'jumpVariable', + category: 'power', + }), + createAnalysisConfig({ + label: 'Size', + analysis: 'size_of', + variable: 'sizeVariable', + category: 'sizeing', + }), + ] + const newConfiguration = createConfiguration({ + _id: new ObjectId(), + config: { + 0: configAnalysisData, + }, + }) + const dataOne = { + study: 'YA', + assessment: 'jump_of', + participant: 'YA01', + dayData: [ + createParticipantDayData({ + day: 10, + jumpVariable: 1, + }), + createParticipantDayData({ + day: 20, + jumpVariable: 30, + }), + ], + } + const dataTwo = { + study: 'YA', + participant: 'YA01', + assessment: 'size_of', + dayData: [ + createParticipantDayData({ + day: 1, + sizeVariable: 30, + }), + createParticipantDayData({ + day: 45, + sizeVariable: 2, + }), + ], + } + + beforeAll(async () => { + user = createUser({ + uid: 'owl', + preferences: { + config: newConfiguration._id.toString(), + }, + access: ['YA', 'LA', 'MA'], + }) + appDb = await global.MONGO_INSTANCE.db('matrix') + await appDb.collection(collections.configs).insertOne(newConfiguration) + await appDb + .collection(collections.assessmentDayData) + .insertMany([dataOne, dataTwo]) + await appDb.collection(collections.users).insertOne(user) + await appDb.collection(collections.metadata).insertOne({ + study: 'YA', + participants: [ + { participant: 'YA01', Consent: new Date('2022-02-26') }, + ], + }) + }) + afterAll(async () => await appDb.dropDatabase()) + + it('returns a status of 200 and a user object', async () => { + const study = 'YA' + const subject = 'YA01' + const params = { + study, + subject, + } + const request = createRequestWithUser( + { app: { locals: { appDb } }, params }, + user + ) + const response = createResponse() + + await DashboardsController.show(request, response) + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: { + graph: { + configurations: [ + { + analysis: 'jump_of', + category: 'power', + color: [], + label: 'Jump', + range: [], + variable: 'jumpVariable', + }, + { + analysis: 'size_of', + category: 'sizeing', + color: [], + label: 'Size', + range: [], + variable: 'sizeVariable', + }, + ], + consentDate: new Date('2022-02-26T00:00:00.000Z'), + matrixData: [ + { + analysis: 'jump_of', + category: 'power', + color: [], + data: [ + { + day: 10, + jumpVariable: 1, + }, + { + day: 20, + jumpVariable: 30, + }, + ], + label: 'Jump', + range: [], + stat: [ + { + max: 30, + mean: 15.5, + min: 1, + }, + ], + variable: 'jumpVariable', + }, + { + analysis: 'size_of', + category: 'sizeing', + color: [], + data: [ + { + day: 1, + sizeVariable: 30, + }, + { + day: 45, + sizeVariable: 2, + }, + ], + label: 'Size', + range: [], + stat: [ + { + max: 30, + mean: 16, + min: 2, + }, + ], + variable: 'sizeVariable', + }, + ], + }, + subject: { + project: 'YA', + sid: 'YA01', + }, + }, + }) + }) + }) + describe('When unsuccessful', () => { + it('returns a status of 500 and an error', async () => { + const study = 'studyA' + const subject = 'subjectA' + const params = { + study, + subject, + } + const request = createRequestWithUser({ params }) + const response = createResponse() + + request.app.locals.appDb.findOne.mockImplementation(() => { + throw new Error('some error') + }) + + await DashboardsController.show(request, response) + + expect(response.status).toHaveBeenCalledWith(500) + expect(response.json).toHaveBeenCalledWith({ message: 'some error' }) + }) + }) + }) +}) diff --git a/server/controllers/dashboardController/index.js b/server/controllers/dashboardController/index.js new file mode 100644 index 00000000..8dcdc02c --- /dev/null +++ b/server/controllers/dashboardController/index.js @@ -0,0 +1,44 @@ +import { ObjectId } from 'mongodb' + +import ConfigModel from '../../models/ConfigModel' +import UserModel from '../../models/UserModel' +import DashboardService from '../../services/DashboardService' + +const DashboardsController = { + show: async (req, res) => { + try { + const { appDb } = req.app.locals + const { study, subject } = req.params + const user = await UserModel.findOne(appDb, { uid: req.user.uid }) + const userConfigurationQuery = { + _id: new ObjectId(user.preferences.config), + } + const config = await ConfigModel.findOne(appDb, userConfigurationQuery) + const flatConfig = Object.values(config.config).flat() + + const { createMatrix, consentDate } = new DashboardService( + appDb, + study, + subject, + flatConfig + ) + const participantConsentDate = await consentDate() + const matrixData = await createMatrix() + + return res.status(200).json({ + data: { + subject: { sid: subject, project: study }, + graph: { + matrixData, + configurations: flatConfig, + consentDate: participantConsentDate, + }, + }, + }) + } catch (err) { + return res.status(500).json({ message: err.message }) + } + }, +} + +export default DashboardsController diff --git a/server/controllers/participantsController/index.js b/server/controllers/participantsController/index.js new file mode 100644 index 00000000..8118cce8 --- /dev/null +++ b/server/controllers/participantsController/index.js @@ -0,0 +1,26 @@ +import { DEFAULT_PARTICIPANTS_SORT } from '../../constants' +import ParticipantsModel from '../../models/ParticipantsModel' +import UserModel from '../../models/UserModel' + +const ParticipantsController = { + index: async (req, res) => { + try { + const { appDb } = req.app.locals + const parsedQueryParams = Object.keys(req.query).length + ? req.query + : DEFAULT_PARTICIPANTS_SORT + const user = await UserModel.findOne(appDb, { uid: req.user.uid }) + const participants = await ParticipantsModel.index( + appDb, + user, + parsedQueryParams + ) + + return res.status(200).json({ data: participants }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, +} + +export default ParticipantsController diff --git a/server/controllers/participantsController/participantsController.test.js b/server/controllers/participantsController/participantsController.test.js new file mode 100644 index 00000000..f059a133 --- /dev/null +++ b/server/controllers/participantsController/participantsController.test.js @@ -0,0 +1,385 @@ +import ParticipantsController from './' +import { + createRequestWithUser, + createResponse, + createUser, + createMetadataParticipant, + createAssessmentDayData, +} from '../../../test/fixtures' +import { collections } from '../../utils/mongoCollections' + +describe('ParticipantsController', () => { + describe(ParticipantsController.index, () => { + describe('When successful', () => { + let appDb + + beforeAll(async () => { + appDb = await global.MONGO_INSTANCE.db('participants') + }) + beforeEach(async () => { + await appDb.createCollection(collections.metadata) + await appDb.createCollection(collections.users) + await appDb.createCollection(collections.assessmentDayData) + }) + + afterEach(async () => { + await appDb.collection(collections.users).drop() + await appDb.collection(collections.metadata).drop() + await appDb.collection(collections.assessmentDayData).drop() + }) + afterAll(async () => { + await appDb.dropDatabase() + }) + + it('returns a status of 200 and a list of participants that are sorted by users favorites then participant in ascending order ', async () => { + const user = createUser({ + uid: 'owl', + name: 'Eaurasian Eagle Owl', + access: ['CA', 'YA'], + preferences: { + star: { YA: ['YA00037', 'YA0015'] }, + complete: { CA: ['CA00063'] }, + }, + }) + + await appDb.collection(collections.users).insertOne(user) + await appDb.collection(collections.metadata).insertMany([ + { + study: 'CA', + participants: [ + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'CA00063', + synced: new Date('07/28/2022'), + study: 'CA', + daysInStudy: 49, + }), + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'CA00064', + synced: new Date('2022-06-24'), + study: 'CA', + daysInStudy: 15, + }), + ], + }, + { + study: 'YA', + participants: [ + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'YA00037', + synced: new Date('07/28/2022'), + study: 'YA', + daysInStudy: 49, + }), + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'YA29023', + synced: new Date('07/28/2022'), + study: 'YA', + daysInStudy: 49, + }), + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'YA00015', + synced: new Date('07/28/2022'), + study: 'YA', + daysInStudy: 49, + }), + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'YA01508', + synced: new Date('07/28/2022'), + study: 'YA', + daysInStudy: 49, + }), + ], + }, + ]) + await appDb.collection(collections.assessmentDayData).insertMany([ + createAssessmentDayData({ + study: 'CA', + participant: 'CA00063', + dayData: [ + { + day: 49, + }, + ], + }), + createAssessmentDayData({ + study: 'CA', + participant: 'CA00064', + dayData: [ + { + day: 15, + }, + ], + }), + createAssessmentDayData({ + study: 'YA', + participant: 'YA00037', + dayData: [ + { + day: 49, + }, + ], + }), + createAssessmentDayData({ + study: 'YA', + participant: 'YA29023', + dayData: [ + { + day: 49, + }, + ], + }), + createAssessmentDayData({ + study: 'YA', + participant: 'YA00015', + dayData: [ + { + day: 49, + }, + ], + }), + createAssessmentDayData({ + study: 'YA', + participant: 'YA01508', + dayData: [ + { + day: 49, + }, + ], + }), + ]) + + const request = createRequestWithUser( + { + app: { locals: { appDb } }, + }, + user + ) + const response = createResponse() + + const result = [ + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'YA00037', + synced: new Date('07/28/2022'), + study: 'YA', + complete: false, + daysInStudy: 49, + star: true, + }), + createMetadataParticipant({ + participant: 'CA00063', + synced: new Date('07/28/2022'), + study: 'CA', + star: false, + Consent: new Date('2022-06-09'), + complete: true, + daysInStudy: 49, + }), + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'CA00064', + synced: new Date('2022-06-24'), + study: 'CA', + complete: false, + daysInStudy: 15, + star: false, + }), + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'YA00015', + synced: new Date('07/28/2022'), + study: 'YA', + complete: false, + daysInStudy: 49, + star: false, + }), + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'YA01508', + synced: new Date('07/28/2022'), + study: 'YA', + complete: false, + daysInStudy: 49, + star: false, + }), + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'YA29023', + synced: new Date('07/28/2022'), + study: 'YA', + complete: false, + daysInStudy: 49, + star: false, + }), + ] + + await ParticipantsController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ data: result }) + }) + + it('returns a status of 200 and a list of participants by search query', async () => { + const user = createUser({ + uid: 'owl', + name: 'Eaurasian Eagle Owl', + access: ['CA', 'YA'], + preferences: { + star: { YA: ['YA00037', 'YA0015'] }, + complete: { CA: ['CA00063'] }, + }, + }) + const result = createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'YA29023', + synced: new Date('07/28/2022'), + study: 'YA', + daysInStudy: 49, + }) + + await appDb.collection(collections.users).insertOne(user) + await appDb.collection(collections.metadata).insertMany([ + { + study: 'CA', + participants: [ + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'CA00063', + synced: new Date('07/28/2022'), + study: 'CA', + }), + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'CA00064', + synced: new Date('2022-06-24'), + study: 'CA', + }), + ], + }, + { + study: 'YA', + participants: [ + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'YA00037', + synced: new Date('07/28/2022'), + study: 'YA', + }), + + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'YA00015', + synced: new Date('07/28/2022'), + study: 'YA', + }), + createMetadataParticipant({ + Consent: new Date('2022-06-09'), + participant: 'YA01508', + synced: new Date('07/28/2022'), + study: 'YA', + }), + result, + ], + }, + ]) + await appDb.collection(collections.assessmentDayData).insertMany([ + createAssessmentDayData({ + study: 'CA', + participant: 'CA00063', + dayData: [ + { + day: 49, + }, + ], + }), + createAssessmentDayData({ + study: 'CA', + participant: 'CA00064', + dayData: [ + { + day: 49, + }, + ], + }), + createAssessmentDayData({ + study: 'YA', + participant: 'YA00037', + dayData: [ + { + day: 49, + }, + ], + }), + createAssessmentDayData({ + study: 'YA', + participant: 'YA29023', + dayData: [ + { + day: 49, + }, + ], + }), + createAssessmentDayData({ + study: 'YA', + participant: 'YA00015', + dayData: [ + { + day: 49, + }, + ], + }), + createAssessmentDayData({ + study: 'YA', + participant: 'YA01508', + dayData: [ + { + day: 49, + }, + ], + }), + ]) + const request = createRequestWithUser( + { + app: { locals: { appDb } }, + query: { + searchParticipants: ['YA29023'], + }, + }, + user + ) + const response = createResponse() + + await ParticipantsController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: [{ ...result, complete: false, daysInStudy: 49, star: false }], + }) + }) + }) + + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message', async () => { + const request = createRequestWithUser() + const response = createResponse() + + request.app.locals.appDb.findOne.mockImplementation(() => { + throw new Error('some error') + }) + + await ParticipantsController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'some error', + }) + }) + }) + }) +}) diff --git a/server/controllers/studiesController/index.js b/server/controllers/studiesController/index.js new file mode 100644 index 00000000..cb4b463d --- /dev/null +++ b/server/controllers/studiesController/index.js @@ -0,0 +1,16 @@ +import StudiesModel from '../../models/StudiesModel' + +const studiesController = { + index: async (req, res) => { + try { + const { appDb } = req.app.locals + const studies = await StudiesModel.all(appDb) + + return res.status(200).json({ data: studies }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, +} + +export default studiesController diff --git a/server/controllers/studiesController/studiesController.test.js b/server/controllers/studiesController/studiesController.test.js new file mode 100644 index 00000000..da878fd0 --- /dev/null +++ b/server/controllers/studiesController/studiesController.test.js @@ -0,0 +1,40 @@ +import studiesController from '.' +import { createRequest, createResponse } from '../../../test/fixtures' + +describe('studiesController', () => { + describe(studiesController.index, () => { + describe('When successful', () => { + it('returns a status of 200 with a list of distinct studies', async () => { + const request = createRequest() + const response = createResponse() + const listOfStudies = ['YA', 'CA', 'LA'] + + request.app.locals.appDb.distinct.mockResolvedValueOnce(listOfStudies) + + await studiesController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: ['YA', 'CA', 'LA'], + }) + }) + }) + describe('When unsuccessful', () => { + it('returns a status of 400 with an error message', async () => { + const request = createRequest() + const response = createResponse() + + request.app.locals.appDb.distinct.mockRejectedValueOnce( + new Error('some error') + ) + + await studiesController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'some error', + }) + }) + }) + }) +}) diff --git a/server/controllers/userStudiesController/index.js b/server/controllers/userStudiesController/index.js new file mode 100644 index 00000000..2e8def5b --- /dev/null +++ b/server/controllers/userStudiesController/index.js @@ -0,0 +1,31 @@ +import UserModel from '../../models/UserModel' +import UserStudiesModel from '../../models/UserStudiesModel' + +const userStudiesController = { + index: async (req, res) => { + try { + const { appDb } = req.app.locals + const isSortRequested = Object.hasOwn(req.query, 'sort') + const parsedSortParams = + isSortRequested && Object.keys(req.query.sort).length + ? req.query.sort + : { sortBy: 'study', sortDirection: 'ASC' } + const userAccess = await UserModel.findOne( + appDb, + { uid: req.user.uid }, + { access: 1 } + ) + const userStudies = await UserStudiesModel.all( + appDb, + userAccess.access, + parsedSortParams + ) + + return res.status(200).json({ data: userStudies }) + } catch (error) { + return res.status(400).json({ message: error.message }) + } + }, +} + +export default userStudiesController diff --git a/server/controllers/userStudiesController/userStudiesController.test.js b/server/controllers/userStudiesController/userStudiesController.test.js new file mode 100644 index 00000000..3206c4b8 --- /dev/null +++ b/server/controllers/userStudiesController/userStudiesController.test.js @@ -0,0 +1,126 @@ +import userStudiesController from '.' +import { + createResponse, + createRequestWithUser, + createUser, + createStudyTableRowData, +} from '../../../test/fixtures' +import { createStudies } from '../../../test/testUtils' +import { collections } from '../../utils/mongoCollections' + +describe('userStudiesController', () => { + describe(userStudiesController.index, () => { + describe('When successful', () => { + let appDb + let user + + beforeAll(async () => { + user = createUser({ + uid: 'owl', + preferences: {}, + access: ['YA', 'LA', 'MA'], + }) + + appDb = await global.MONGO_INSTANCE.db('studies') + + await appDb.collection(collections.users).insertOne(user) + await appDb.collection(collections.metadata).insertMany(createStudies()) + }) + afterAll(async () => { + await appDb.dropDatabase() + }) + + it('returns a list of studies with the column properties to be displayed', async () => { + const response = createResponse() + const request = createRequestWithUser( + { + query: { sort: {} }, + app: { locals: { appDb } }, + }, + user + ) + const data = [ + createStudyTableRowData({ + daysInStudy: 655, + numOfParticipants: 2, + study: 'LA', + updatedAt: new Date('01-05-2024'), + }), + createStudyTableRowData({ + daysInStudy: 1005, + numOfParticipants: 2, + study: 'MA', + updatedAt: new Date('01-05-2024'), + }), + createStudyTableRowData({ + daysInStudy: 105, + numOfParticipants: 2, + study: 'YA', + updatedAt: new Date('01-05-2024'), + }), + ] + await userStudiesController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data, + }) + }) + + it('returns a list using default sort properties if sort property is missing', async () => { + const response = createResponse() + const request = createRequestWithUser( + { + query: {}, + app: { locals: { appDb } }, + }, + user + ) + const data = [ + createStudyTableRowData({ + daysInStudy: 655, + numOfParticipants: 2, + study: 'LA', + updatedAt: new Date('01-05-2024'), + }), + createStudyTableRowData({ + daysInStudy: 1005, + numOfParticipants: 2, + study: 'MA', + updatedAt: new Date('01-05-2024'), + }), + createStudyTableRowData({ + daysInStudy: 105, + numOfParticipants: 2, + study: 'YA', + updatedAt: new Date('01-05-2024'), + }), + ] + + await userStudiesController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data, + }) + }) + }) + describe('When unsuccessful', () => { + it('returns a status of 400 and an error', async () => { + const request = createRequestWithUser({ query: { sort: {} } }) + const response = createResponse() + + request.app.locals.appDb.findOne.mockRejectedValueOnce( + new Error('some error') + ) + + await userStudiesController.index(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + message: 'some error', + }) + }) + }) + }) +}) diff --git a/server/controllers/usersController/index.js b/server/controllers/usersController/index.js new file mode 100644 index 00000000..5f03bf83 --- /dev/null +++ b/server/controllers/usersController/index.js @@ -0,0 +1,30 @@ +import UserModel from '../../models/UserModel' + +const UsersController = { + edit: async (req, res) => { + try { + const { appDb } = req.app.locals + const { uid } = req.params + const updatedUser = await UserModel.update(appDb, uid, req.body) + + return res.status(200).json({ data: updatedUser }) + } catch (error) { + return res.status(400).json({ error: error.message }) + } + }, + show: async (req, res) => { + try { + const { appDb } = req.app.locals + const { uid } = req.params + const user = await UserModel.findOne(appDb, { uid }) + + return res.status(200).json({ data: user }) + } catch (error) { + return res.status(400).json({ + error: error.message, + }) + } + }, +} + +export default UsersController diff --git a/server/controllers/usersController/usersController.test.js b/server/controllers/usersController/usersController.test.js new file mode 100644 index 00000000..d83c99d1 --- /dev/null +++ b/server/controllers/usersController/usersController.test.js @@ -0,0 +1,105 @@ +import UsersController from '.' +import { + createRequestWithUser, + createResponse, + createUser, +} from '../../../test/fixtures' + +describe('UsersController', () => { + const params = { uid: 'owl' } + + describe(UsersController.show, () => { + describe('When successful', () => { + it('returns a status of 200 and a user object', async () => { + const request = createRequestWithUser({ params }) + const response = createResponse() + + request.app.locals.appDb.findOne.mockResolvedValue( + createUser({ + uid: 'owl', + name: 'Eaurasian Eagle Owl', + }) + ) + + await UsersController.show(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: { + uid: 'owl', + name: 'Eaurasian Eagle Owl', + display_name: 'Display Name', + icon: 'icon', + }, + }) + }) + }) + + describe('When unsuccessful', () => { + it('returns a status of 400 and an error message', async () => { + const request = createRequestWithUser({ params }) + const response = createResponse() + + request.app.locals.appDb.findOne.mockImplementation(() => { + throw new Error('some error') + }) + + await UsersController.show(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'some error', + }) + }) + }) + }) + + describe(UsersController.edit, () => { + const body = { name: 'Eaurasian Eagle Owl' } + + describe('When successful', () => { + it('sends a status of 200 with a data result', async () => { + const request = createRequestWithUser({ params, body }) + const response = createResponse() + + request.app.locals.appDb.findOneAndUpdate.mockResolvedValueOnce( + createUser({ + name: 'Eaurasian Eagle Owl', + owner: 'owl', + }) + ) + + await UsersController.edit(request, response) + + expect(response.status).toHaveBeenCalledWith(200) + expect(response.json).toHaveBeenCalledWith({ + data: { + display_name: 'Display Name', + icon: 'icon', + name: 'Eaurasian Eagle Owl', + owner: 'owl', + uid: 'user-uid', + }, + }) + }) + }) + + describe('when unsuccessful', () => { + it('returns a 400 error with the error message', async () => { + const request = createRequestWithUser({ params, body }) + const response = createResponse() + + request.app.locals.appDb.findOneAndUpdate.mockRejectedValueOnce( + new Error('User could not be updated') + ) + + await UsersController.edit(request, response) + + expect(response.status).toHaveBeenCalledWith(400) + expect(response.json).toHaveBeenCalledWith({ + error: 'User could not be updated', + }) + }) + }) + }) +}) diff --git a/server/data_processors/BarChartDataProcessor/BarChartDataProcessor.test.js b/server/data_processors/BarChartDataProcessor/BarChartDataProcessor.test.js new file mode 100644 index 00000000..33709431 --- /dev/null +++ b/server/data_processors/BarChartDataProcessor/BarChartDataProcessor.test.js @@ -0,0 +1,164 @@ +import BarChartDataProcessor from '.' +import { createChart, createFieldLabelValue } from '../../../test/fixtures' +import { dayDataAssessments } from '../../../test/testUtils' +import { TOTALS_STUDY } from '../../constants' + +describe(BarChartDataProcessor, () => { + const chart = createChart( + { + title: 'Eeg Measurements', + description: 'Participant EEG Measurements', + assessment: 'eeg', + variable: 'eeg', + public: false, + owner: 'owl', + }, + [ + createFieldLabelValue({ + value: 'bar', + label: 'Bar', + color: 'red', + targetValues: { + LA: '2', + YA: '1', + MA: '2', + }, + }), + ] + ) + const initialStudyTotals = { + [TOTALS_STUDY]: { count: 0, targetTotal: 0 }, + 'Site 1': { count: 0, targetTotal: undefined }, + 'Site 2': { count: 0, targetTotal: undefined }, + } + const participants = dayDataAssessments + + describe('.processData', () => { + it('returns processed data', async () => { + const service = new BarChartDataProcessor(chart, initialStudyTotals) + participants.forEach((doc) => service.processDocument(doc)) + + const processedData = service.processData() + const expectedLabelMap = { + Bar: { + color: 'red', + name: 'Bar', + }, + Foo: { + color: '#e2860a', + name: 'Foo', + }, + } + const expectedDataMap = { + 'Madrid-Bar-MA-2': 0, + 'Madrid-Foo-MA-3': 4, + 'Totals-Bar': 2, + 'Totals-Foo': 10, + 'UCLA-Bar-LA-2': 0, + 'UCLA-Foo-LA-3': 4, + 'Yale-Bar-YA-1': 2, + 'Yale-Foo-YA-3': 2, + } + const expectedProcessedDataBySite = { + Madrid: { + counts: { + Bar: 0, + Foo: 4, + 'N/A': 0, + }, + siteCode: 'MA', + name: 'Madrid', + percentages: { + Bar: 0, + Foo: 100, + 'N/A': 0, + }, + targets: { + Bar: 2, + Foo: 3, + }, + totalsForStudy: { + count: 4, + targetValue: '3', + }, + }, + Totals: { + counts: { + Bar: 2, + Foo: 10, + 'N/A': 0, + }, + siteCode: 'Totals', + name: 'Totals', + percentages: { + Bar: 16.666666666666664, + Foo: 83.33333333333334, + 'N/A': 0, + }, + targets: { + Bar: 5, + Foo: 9, + }, + totalsForStudy: { + count: 12, + targetTotal: 0, + }, + }, + UCLA: { + counts: { + Bar: 0, + Foo: 4, + 'N/A': 0, + }, + siteCode: 'LA', + name: 'UCLA', + percentages: { + Bar: 0, + Foo: 100, + 'N/A': 0, + }, + targets: { + Bar: 2, + Foo: 3, + }, + totalsForStudy: { + count: 4, + targetValue: '3', + }, + }, + Yale: { + counts: { + Bar: 2, + Foo: 2, + 'N/A': 0, + }, + siteCode: 'YA', + name: 'Yale', + percentages: { + Bar: 50, + Foo: 50, + 'N/A': 0, + }, + targets: { + Bar: 1, + Foo: 3, + }, + totalsForStudy: { + count: 4, + targetValue: '3', + }, + }, + } + + expect(processedData.processedDataBySite).toEqual( + new Map(Object.entries(expectedProcessedDataBySite)) + ) + expect(processedData.dataMap).toEqual( + new Map(Object.entries(expectedDataMap)) + ) + expect(processedData.labelMap).toEqual( + new Map(Object.entries(expectedLabelMap)) + ) + }) + }) +}) diff --git a/server/data_processors/BarChartDataProcessor/index.js b/server/data_processors/BarChartDataProcessor/index.js new file mode 100644 index 00000000..da48b10b --- /dev/null +++ b/server/data_processors/BarChartDataProcessor/index.js @@ -0,0 +1,257 @@ +import { EMPTY_VALUE, N_A, TOTALS_STUDY } from '../../constants' +import { SITE_NAMES } from '../../utils/siteNames' + +const studyCountsToPercentage = (studyCount, targetTotal) => { + if (!targetTotal || Number.isNaN(+studyCount) || Number.isNaN(+targetTotal)) + return 0 + + return (+studyCount / +targetTotal) * 100 +} + +const calculateTotalsTargetValue = (currentTargetCount, nextTargetCount) => + currentTargetCount ? +currentTargetCount + +nextTargetCount : +nextTargetCount + +const calculateStudySectionTargetValue = ( + studySectionTotalTarget, + studySectionTotalCount +) => { + if ( + !!studySectionTotalTarget && + studySectionTotalTarget > studySectionTotalCount + ) { + return +studySectionTotalTarget + } + + return +studySectionTotalCount || 0 +} + +class BarChartDataProcessor { + constructor(chart, studyTotals) { + this.chart = chart + this.studyTotals = studyTotals + this.labelMap = new Map() + this.dataMap = new Map() + } + + processDocument = (document) => { + this.chart.fieldLabelValueMap.forEach((fieldLabelValueMap) => { + this._processFieldLabelValueMap( + fieldLabelValueMap, + document.study, + document.dayData + ) + }) + } + + processData = () => { + this._postProcessData() + + if (this._isAnyTargetIncluded()) { + this.labelMap.set(N_A, { name: N_A, color: '#808080' }) + } + + return this + } + + _processFieldLabelValueMap = ( + fieldLabelValueMap, + study, + participantDayData + ) => { + const { color, label, value, targetValues } = fieldLabelValueMap + const targetValue = targetValues[study] + const siteName = SITE_NAMES[study] || study + const dataKey = `${siteName}-${label}-${study}-${targetValue}` + const totalsDataKey = `${TOTALS_STUDY}-${label}` + const isVariableValueEmpty = value === EMPTY_VALUE + const shouldCountParticipant = isVariableValueEmpty + ? participantDayData.every((day) => day[this.chart.variable] === value) + : participantDayData.some( + (dayData) => String(dayData[this.chart.variable]) === String(value) + ) + const participantVariableDayCount = + isVariableValueEmpty && shouldCountParticipant + ? 1 + : this.#calculateParticipantVariableDayCount(participantDayData, value) + + this.labelMap.set(label, { name: label, color }) + this._processData({ + shouldCountParticipant, + dataKey, + totalsDataKey, + variableCount: participantVariableDayCount, + }) + this._processTotals({ + shouldCountParticipant, + siteName, + targetValue, + variableCount: participantVariableDayCount, + }) + } + + #calculateParticipantVariableDayCount = ( + participantAssessmentDayData, + chartValue + ) => { + const isChartVariableNaN = isNaN(chartValue) + const variableValue = isChartVariableNaN ? chartValue : +chartValue + const participantsDayDataAndVariable = participantAssessmentDayData.filter( + (dayData) => dayData[this.chart.variable] === variableValue + ) + + return participantsDayDataAndVariable.length + } + + _processData = ({ + shouldCountParticipant, + dataKey, + totalsDataKey, + variableCount, + }) => { + if (shouldCountParticipant) { + const existingData = this.dataMap.get(dataKey) + const existingTotalsData = this.dataMap.get(totalsDataKey) + + if (existingData) { + this.dataMap.set(dataKey, existingData + variableCount) + } else { + this.dataMap.set(dataKey, variableCount) + } + + if (existingTotalsData) { + this.dataMap.set(totalsDataKey, existingTotalsData + variableCount) + } else { + this.dataMap.set(totalsDataKey, variableCount) + } + } else { + if (!this.dataMap.get(dataKey)) this.dataMap.set(dataKey, 0) + } + } + + _processTotals = ({ + shouldCountParticipant, + siteName, + targetValue, + variableCount, + }) => { + if (shouldCountParticipant) { + if (this.studyTotals[siteName]) { + this.studyTotals[siteName].count += variableCount + } else { + this.studyTotals[siteName] = { + count: variableCount, + targetValue, + } + } + this.studyTotals[TOTALS_STUDY].count += variableCount + } + } + + _postProcessData = () => { + const processedDataBySite = new Map() + const totalsValueTargets = {} + + for (const [key, count] of this.dataMap) { + const [siteName, valueLabel, study, targetValue] = key.split('-') + const totalsForStudy = this.studyTotals[siteName] + const totals = totalsForStudy.targetTotal || totalsForStudy.count + const percent = studyCountsToPercentage(count, totals) + const existingEntriesForStudy = processedDataBySite.get(siteName) + const targetValueAsNumber = +targetValue + const targetValueIsNaN = Number.isNaN(targetValueAsNumber) + const hasTargetValue = + !!targetValue && !targetValueIsNaN && siteName !== TOTALS_STUDY + const isTargetValueMissing = !targetValue && siteName !== TOTALS_STUDY + + if (hasTargetValue) { + totalsValueTargets[valueLabel] = calculateTotalsTargetValue( + totalsValueTargets[valueLabel], + targetValue + ) + } + + if (isTargetValueMissing) { + totalsValueTargets[valueLabel] = calculateTotalsTargetValue( + totalsValueTargets[valueLabel], + totalsForStudy.count + ) + } + + if (existingEntriesForStudy) { + processedDataBySite.set(siteName, { + ...existingEntriesForStudy, + counts: { + ...existingEntriesForStudy.counts, + [valueLabel]: count, + }, + percentages: { + ...existingEntriesForStudy.percentages, + [valueLabel]: percent, + }, + targets: { + ...existingEntriesForStudy.targets, + [valueLabel]: targetValueIsNaN ? undefined : +targetValueAsNumber, + }, + }) + } else { + processedDataBySite.set(siteName, { + name: siteName, + siteCode: study, + counts: { + [valueLabel]: count, + }, + totalsForStudy, + percentages: { + [valueLabel]: percent, + }, + targets: { + [valueLabel]: targetValueIsNaN ? undefined : +targetValueAsNumber, + }, + }) + } + } + + for (const [study, values] of processedDataBySite) { + const { targetTotal, count: currentSiteCount } = this.studyTotals[study] + const isTargetGreaterThanCount = + targetTotal && targetTotal > currentSiteCount + const count = isTargetGreaterThanCount + ? targetTotal - currentSiteCount + : 0 + const studySectionTargetValue = calculateStudySectionTargetValue( + targetTotal, + currentSiteCount + ) + const percent = studyCountsToPercentage(count, studySectionTargetValue) + + processedDataBySite.set(study, { + ...values, + counts: { + ...values.counts, + [N_A]: count, + }, + percentages: { + ...values.percentages, + [N_A]: percent, + }, + }) + } + + const processedTotals = processedDataBySite.get(TOTALS_STUDY) + processedDataBySite.set(TOTALS_STUDY, { + ...processedTotals, + targets: totalsValueTargets, + siteCode: TOTALS_STUDY, + }) + + this.processedDataBySite = processedDataBySite + } + + _isAnyTargetIncluded = () => { + return Object.keys(this.studyTotals) + .filter((site) => site !== TOTALS_STUDY) + .some((site) => this.studyTotals[site]?.targetTotal !== undefined) + } +} + +export default BarChartDataProcessor diff --git a/server/data_processors/DashboardDataProcessor/DashboardDataProcessor.test.js b/server/data_processors/DashboardDataProcessor/DashboardDataProcessor.test.js new file mode 100644 index 00000000..2c9759a6 --- /dev/null +++ b/server/data_processors/DashboardDataProcessor/DashboardDataProcessor.test.js @@ -0,0 +1,144 @@ +import DashboardDataProcessor from '.' +import { + createAnalysisConfig, + createParticipantDayData, + createMatrixData, +} from '../../../test/fixtures' + +describe('Data Processors - Dashboard', () => { + describe(DashboardDataProcessor.calculateDashboardData, () => { + const jumpVariableData = { + assessment: 'jump_of', + dayData: [ + createParticipantDayData({ + day: 10, + jumpVariable: 1, + }), + createParticipantDayData({ + day: 20, + jumpVariable: 30, + }), + ], + } + const sizeVariableData = { + assessment: 'size_of', + dayData: [ + createParticipantDayData({ + day: 1, + sizeVariable: 30, + }), + createParticipantDayData({ + day: 45, + sizeVariable: 2, + }), + ], + } + const participantDataMap = new Map() + participantDataMap.set( + sizeVariableData.assessment, + sizeVariableData.dayData + ) + participantDataMap.set( + jumpVariableData.assessment, + jumpVariableData.dayData + ) + + const config = [ + createAnalysisConfig({ + label: 'Size', + analysis: 'size_of', + color: ['red', 'blue', 'white'], + range: [1, 2], + variable: 'sizeVariable', + category: 'measurements', + }), + createAnalysisConfig({ + label: 'Jump', + analysis: 'jump_of', + color: ['red', 'blue', 'white'], + range: [1, 2], + variable: 'jumpVariable', + category: 'power', + }), + createAnalysisConfig({ + label: 'Read', + analysis: 'read_of', + color: ['red', 'blue', 'white'], + range: [1, 2], + variable: 'readVariable', + category: 'reading', + }), + ] + + it('calculates the min, max and mean of the data and appends it to the matrix result array', () => { + const dashboardProcessor = new DashboardDataProcessor( + config, + participantDataMap + ) + const matrixData = dashboardProcessor.calculateDashboardData() + + expect(matrixData).toEqual([ + createMatrixData({ + analysis: 'size_of', + category: 'measurements', + color: ['red', 'blue', 'white'], + data: [ + { + day: 1, + sizeVariable: 30, + }, + { + day: 45, + sizeVariable: 2, + }, + ], + label: 'Size', + range: [1, 2], + stat: [ + { + max: 30, + mean: 16, + min: 2, + }, + ], + variable: 'sizeVariable', + }), + createMatrixData({ + analysis: 'jump_of', + category: 'power', + color: ['red', 'blue', 'white'], + data: [ + { + day: 10, + jumpVariable: 1, + }, + { + day: 20, + jumpVariable: 30, + }, + ], + label: 'Jump', + range: [1, 2], + stat: [ + { + max: 30, + mean: 15.5, + min: 1, + }, + ], + variable: 'jumpVariable', + }), + createMatrixData({ + analysis: 'read_of', + category: 'reading', + color: ['red', 'blue', 'white'], + data: [], + label: 'Read', + range: [1, 2], + stat: [], + variable: 'readVariable', + }), + ]) + }) + }) +}) diff --git a/server/data_processors/DashboardDataProcessor/index.js b/server/data_processors/DashboardDataProcessor/index.js new file mode 100644 index 00000000..53a53076 --- /dev/null +++ b/server/data_processors/DashboardDataProcessor/index.js @@ -0,0 +1,55 @@ +class DashboardDataProcessor { + matrixData = [] + + constructor(configuration, participantDataMap) { + this.configuration = configuration + this.participantDataMap = participantDataMap + } + + calculateDashboardData = () => { + this.configuration.forEach(({ analysis, variable, label, ...rest }) => { + const assessmentData = this.participantDataMap.get(analysis) + if (!assessmentData) + this.matrixData.push({ + analysis, + data: [], + label, + variable, + stat: [], + ...rest, + }) + else { + const variableData = assessmentData.reduce( + (variableDataArray, dayData) => { + if (Object.hasOwn(dayData, variable)) + variableDataArray.push({ + day: dayData.day, + [variable]: dayData[variable], + }) + + return variableDataArray + }, + [] + ) + const max = Math.max(...variableData.map((data) => data[variable])) + const min = Math.min(...variableData.map((data) => data[variable])) + const sum = variableData.reduce((prev, acc) => prev + acc[variable], 0) + const mean = sum / variableData.length + const stat = [{ max, min, mean }] + + this.matrixData.push({ + analysis, + data: variableData, + label, + variable, + stat: variableData.length ? stat : [], + ...rest, + }) + } + }) + + return this.matrixData + } +} + +export default DashboardDataProcessor diff --git a/server/mailer/AdminAccountPasswordMailer.js b/server/mailer/AdminAccountPasswordMailer.js new file mode 100644 index 00000000..6b52f372 --- /dev/null +++ b/server/mailer/AdminAccountPasswordMailer.js @@ -0,0 +1,13 @@ +import BaseMailer from './BaseMailer' + +export default class AdminAccountPasswordMailer extends BaseMailer { + constructor(resetKey) { + super({ to: [process.env.ADMIN_EMAIL], from: process.env.EMAIL_SENDER }) + this.subject = 'Admin Account Created' + this.resetKey = resetKey + } + + async body() { + return `You've installed DPdash! Your username is "admin". Your password reset token is ${this.resetKey}` + } +} diff --git a/server/mailer/BaseMailer.js b/server/mailer/BaseMailer.js new file mode 100644 index 00000000..df856c6e --- /dev/null +++ b/server/mailer/BaseMailer.js @@ -0,0 +1,64 @@ +import { SES } from '@aws-sdk/client-ses' +import { createTransport } from 'nodemailer' + +export default class BaseMailer { + constructor({ to, from }) { + this.to = to + this.from = from + } + + async sendMail() { + return this.mailService.sendEmail(await this.emailParams()) + } + + get mailService() { + if (process.env.SMTP_HOST) { + return { + sendEmail: async (params) => { + const transporter = createTransport({ + host: process.env.SMTP_HOST, + port: process.env.SMTP_PORT, + auth: { + user: process.env.SMTP_USER, + pass: process.env.SMTP_PASS, + }, + tls: { + // to not fail on invalid certs: + // set SMTP_REJECT_UNAUTHORIZED=false in .env file + rejectUnauthorized: process.env.SMTP_REJECT_UNAUTHORIZED == 'true', + }, + }) + + return await transporter.sendMail({ + from: params.Source, + to: params.Destination.ToAddresses, + subject: params.Message.Subject.Data, + html: params.Message.Body.Html.Data, + }) + }, + } + } + return new SES({ apiVersion: '2010-12-01', region: 'us-east-1' }) + } + + async emailParams() { + return { + Destination: { + ToAddresses: this.to, + }, + Source: this.from, + Message: { + Body: { + Html: { + Charset: 'UTF-8', + Data: await this.body(), + }, + }, + Subject: { + Charset: 'UTF-8', + Data: this.subject, + }, + }, + } + } +} diff --git a/server/mailer/RegistrationMailer.js b/server/mailer/RegistrationMailer.js new file mode 100644 index 00000000..b448cf2f --- /dev/null +++ b/server/mailer/RegistrationMailer.js @@ -0,0 +1,27 @@ +import path from 'path' + +import { renderFile } from 'ejs' + +import BaseMailer from './BaseMailer' + +export default class RegistrationMailer extends BaseMailer { + constructor(user) { + super({ to: [process.env.ADMIN_EMAIL], from: process.env.EMAIL_SENDER }) + this.subject = 'New Registered User' + this.user = user + this.redirectUrl = process.env.HOME_URL + } + + async body() { + const registrationEmailTemplate = path.join( + __dirname, + 'templates', + 'registrationTemplate.ejs' + ) + + return await renderFile(registrationEmailTemplate, { + ...this.user, + redirect: this.redirectUrl, + }) + } +} diff --git a/server/mailer/templates/registrationTemplate.ejs b/server/mailer/templates/registrationTemplate.ejs new file mode 100644 index 00000000..b4b98eb9 --- /dev/null +++ b/server/mailer/templates/registrationTemplate.ejs @@ -0,0 +1,25 @@ + + + + + + + +
+
+

<%= display_name %> using <%= mail %>

+

is requesting access to dpdash

+ Grant Access to Dpdash +
+
+ + diff --git a/server/middleware/validateRequest.js b/server/middleware/validateRequest.js new file mode 100644 index 00000000..6080bd45 --- /dev/null +++ b/server/middleware/validateRequest.js @@ -0,0 +1,31 @@ +import * as yup from 'yup' + +export const baseSchema = (overrides = {}) => + yup.object({ + body: yup.object(), + params: yup.object(), + query: yup.object(), + ...overrides, + }) + +async function validateRequest(schema, requestFields) { + return await schema.validate(requestFields, { + abortEarly: true, + }) +} + +const validateMiddleware = (schema) => async (req, res, next) => { + try { + await validateRequest(schema, { + body: req.body, + params: req.params, + query: req.query, + }) + + next() + } catch (error) { + return res.status(400).json({ error: error.message }) + } +} + +export default validateMiddleware diff --git a/server/middleware/validateRequest.test.js b/server/middleware/validateRequest.test.js new file mode 100644 index 00000000..fc41da10 --- /dev/null +++ b/server/middleware/validateRequest.test.js @@ -0,0 +1,49 @@ +import * as yup from 'yup' + +import validateMiddleware, { baseSchema } from './validateRequest' +import { createRequest, createResponse } from '../../test/fixtures' + +describe(validateMiddleware, () => { + it('returns an error message when inputs are nonvalid', async () => { + const req = createRequest({ + body: { nonexistant: 1 }, + params: { uid: 'some-id' }, + query: {}, + }) + const res = createResponse() + const next = jest.fn() + const schema = baseSchema({ + body: yup.object({ + exists: yup.string().required(), + }), + params: yup.object({ uid: yup.string().required() }), + }) + + await validateMiddleware(schema)(req, res, next) + + expect(res.status).toHaveBeenCalledWith(400) + expect(res.json).toHaveBeenCalledWith({ + error: 'body.exists is a required field', + }) + }) + + it('continues with logic if no errors', async () => { + const req = createRequest({ + body: { exists: 'string' }, + params: { uid: 'some-id' }, + query: {}, + }) + const res = createResponse() + const next = jest.fn() + const schema = baseSchema({ + body: yup.object({ + exists: yup.string().required(), + }), + params: yup.object({ uid: yup.string().required() }), + }) + + await validateMiddleware(schema)(req, res, next) + + expect(next).toHaveBeenCalled() + }) +}) diff --git a/server/models/AssessmentDayDataModel/index.js b/server/models/AssessmentDayDataModel/index.js new file mode 100644 index 00000000..3f2747da --- /dev/null +++ b/server/models/AssessmentDayDataModel/index.js @@ -0,0 +1,31 @@ +import { collections } from '../../utils/mongoCollections' + +const AssessmentDayDataModel = { + all: async (db, query) => + await db + .collection(collections.assessmentDayData) + .find(query, { projection: { participant: 1, _id: 0 } }) + .toArray(), + findOne: async (db, query) => + await db.collection(collections.assessmentDayData).findOne(query), + upsert: async (db, query, updatedAttributes) => + await db.collection(collections.assessmentDayData).findOneAndUpdate( + query, + { $set: updatedAttributes }, + { + upsert: true, + returnDocument: 'after', + } + ), + createMany: async (db, assessmentDayData) => + await db + .collection(collections.assessmentDayData) + .insertMany(assessmentDayData), + index: async (db, query) => + await db + .collection(collections.assessmentDayData) + .aggregate(query) + .toArray(), +} + +export default AssessmentDayDataModel diff --git a/server/models/AssessmentModel/index.js b/server/models/AssessmentModel/index.js new file mode 100644 index 00000000..242e0f24 --- /dev/null +++ b/server/models/AssessmentModel/index.js @@ -0,0 +1,23 @@ +import { collections } from '../../utils/mongoCollections' + +const AssessmentModel = { + all: async (db, query) => + await db.collection(collections.assessments).find(query).toArray(), + upsert: async (db, query, updatedAttributes) => + await db.collection(collections.assessments).findOneAndUpdate( + query, + { $set: updatedAttributes }, + { + upsert: true, + returnDocument: 'after', + } + ), + withDefaults: (overrides = {}) => ({ + name: '', + updatedAt: new Date(), + createdAt: new Date(), + ...overrides, + }), +} + +export default AssessmentModel diff --git a/server/models/AssessmentVariablesModel/assessmentVariablesModel.test.js b/server/models/AssessmentVariablesModel/assessmentVariablesModel.test.js new file mode 100644 index 00000000..3b950037 --- /dev/null +++ b/server/models/AssessmentVariablesModel/assessmentVariablesModel.test.js @@ -0,0 +1,186 @@ +import AssessmentVariablesModel from '.' +import { createAsessmentVariable } from '../../../test/fixtures' +import { collections } from '../../utils/mongoCollections' + +describe('AssessmentVariablesModel', () => { + let appDb + + const initialAssessmentVariables = [ + createAsessmentVariable({ + name: 'var1', + }), + createAsessmentVariable({ + name: 'var2', + }), + createAsessmentVariable({ + name: 'var3', + }), + createAsessmentVariable({ + name: 'var4', + }), + createAsessmentVariable({ + name: 'var6', + }), + createAsessmentVariable({ + name: 'var7', + }), + ] + beforeAll(async () => { + appDb = await global.MONGO_INSTANCE.db('assessment_vars') + }) + beforeEach(async () => { + await appDb.createCollection(collections.assessmentVariables) + }) + + afterEach(async () => { + await appDb.collection(collections.assessmentVariables).drop() + }) + afterAll(async () => { + await appDb.dropDatabase() + }) + + it('creates new assessment variables', async () => { + const newAssessment = 'new_assess_id' + const newVariables = initialAssessmentVariables.map(({ name }) => ({ + name, + assessment_id: newAssessment, + })) + await Promise.all( + newVariables.map( + async (variableMetadata) => + await AssessmentVariablesModel.upsert( + appDb, + variableMetadata, + variableMetadata + ) + ) + ) + + const insertedVariables = await appDb + .collection(collections.assessmentVariables) + .find({ assessment_id: newAssessment }) + .project({ _id: 0 }) + .sort({ name: 1 }) + .toArray() + + expect(insertedVariables).toEqual(newVariables) + }) + + it('will add only new variables to the database, and will not duplicate any variables', async () => { + const importedAssessment = 'already_imported' + await Promise.all( + initialAssessmentVariables.map( + async ({ name }) => + await AssessmentVariablesModel.upsert( + appDb, + { + name, + assessment_id: importedAssessment, + }, + { + name, + assessment_id: importedAssessment, + } + ) + ) + ) + const mixedPayload = [ + createAsessmentVariable({ + name: 'var1', + assessment_id: importedAssessment, + }), + createAsessmentVariable({ + name: 'var2', + assessment_id: importedAssessment, + }), + createAsessmentVariable({ + name: 'var3', + assessment_id: importedAssessment, + }), + createAsessmentVariable({ + name: 'var4', + assessment_id: importedAssessment, + }), + createAsessmentVariable({ + name: 'var6', + assessment_id: importedAssessment, + }), + createAsessmentVariable({ + name: 'var7', + assessment_id: importedAssessment, + }), + createAsessmentVariable({ + name: 'var5', + assessment_id: importedAssessment, + }), + createAsessmentVariable({ + name: 'new-var1', + assessment_id: importedAssessment, + }), + createAsessmentVariable({ + name: 'newvar2', + assessment_id: importedAssessment, + }), + ] + await Promise.all( + mixedPayload.map( + async (variableMetadata) => + await AssessmentVariablesModel.upsert( + appDb, + variableMetadata, + variableMetadata + ) + ) + ) + const insertedData = await appDb + .collection(collections.assessmentVariables) + .find({ assessment_id: importedAssessment }, { projection: { _id: 0 } }) + .toArray() + + expect(insertedData.length).toEqual(mixedPayload.length) + expect(insertedData.map(({ name }) => name).sort()).toEqual( + mixedPayload.map(({ name }) => name).sort() + ) + }) + + it('will not duplicate any data already present in the db', async () => { + const oldAssessment = 'old-assessment' + const varsToInsert = initialAssessmentVariables.map(async ({ name }) => ({ + name, + assessment_id: oldAssessment, + })) + + await Promise.all( + varsToInsert.map( + async (variableMetadata) => + await AssessmentVariablesModel.upsert( + appDb, + variableMetadata, + variableMetadata + ) + ) + ) + const alreadyInserted = await appDb + .collection(collections.assessmentVariables) + .find({ assessment_id: oldAssessment }) + .toArray() + + await Promise.all( + varsToInsert.map( + async (variableMetadata) => + await AssessmentVariablesModel.upsert( + appDb, + variableMetadata, + variableMetadata + ) + ) + ) + + const reImportedData = await appDb + .collection(collections.assessmentVariables) + .find({ assessment_id: oldAssessment }) + .toArray() + + expect(alreadyInserted).toEqual(reImportedData) + }) +}) diff --git a/server/models/AssessmentVariablesModel/index.js b/server/models/AssessmentVariablesModel/index.js new file mode 100644 index 00000000..ae684c7a --- /dev/null +++ b/server/models/AssessmentVariablesModel/index.js @@ -0,0 +1,15 @@ +import { collections } from '../../utils/mongoCollections' + +const AssessmentVariablesModel = { + upsert: async (db, query, assessmentVariableAttributes) => + await db.collection(collections.assessmentVariables).findOneAndUpdate( + query, + { $set: assessmentVariableAttributes }, + { + upsert: true, + returnDocument: 'after', + } + ), +} + +export default AssessmentVariablesModel diff --git a/server/models/ChartsModel/ChartsModel.test.js b/server/models/ChartsModel/ChartsModel.test.js new file mode 100644 index 00000000..e3808be5 --- /dev/null +++ b/server/models/ChartsModel/ChartsModel.test.js @@ -0,0 +1,47 @@ +import { chartsListQuery } from '.' +import { createUser } from '../../../test/fixtures' + +describe(chartsListQuery, () => { + it('returns a mongodb charts query', () => { + const user = createUser({ favoriteCharts: ['1', '2'] }) + const queryParams = { sortBy: 'title', sortDirection: 'ASC' } + + expect(chartsListQuery(user, queryParams)).toEqual([ + { + $match: { + $or: [ + { + owner: 'user-uid', + }, + { + sharedWith: 'user-uid', + }, + { + public: true, + }, + ], + }, + }, + { + $addFields: { + chart_id: { + $toString: '$_id', + }, + }, + }, + { + $addFields: { + favorite: { + $in: ['$chart_id', ['1', '2']], + }, + }, + }, + { + $sort: { + favorite: -1, + title: 1, + }, + }, + ]) + }) +}) diff --git a/server/models/ChartsModel/index.js b/server/models/ChartsModel/index.js new file mode 100644 index 00000000..b92afda6 --- /dev/null +++ b/server/models/ChartsModel/index.js @@ -0,0 +1,82 @@ +import { ObjectId } from 'mongodb' + +import { ASC } from '../../constants' +import { collections } from '../../utils/mongoCollections' + +const id = '$_id' +const idKey = '$chart_id' +const updatedAt = 'updatedAt' +const $updatedAt = '$updatedAt' +const today = () => new Date() + +const ChartsModel = { + create: async (db, chartAttributes) => + await db.collection(collections.charts).insertOne({ + ...chartAttributes, + updatedAt: today(), + createdAt: today(), + }), + all: async (db, user, queryParams) => + await db + .collection(collections.charts) + .aggregate(chartsListQuery(user, queryParams)), + destroy: async (db, chart_id) => { + const { deletedCount } = await db + .collection(collections.charts) + .deleteOne({ _id: new ObjectId(chart_id) }) + + if (deletedCount !== 1) { + throw new Error('Unable to delete chart') + } + }, + show: async (db, query) => + await db.collection(collections.charts).findOne(query), + update: async (db, query, chartAttributes) => + await db + .collection(collections.charts) + .findOneAndUpdate( + query, + { $set: { ...chartAttributes, updatedAt: today() } }, + { returnOriginal: false, upsert: true, returnDocument: 'after' } + ), +} + +export const chartsListQuery = (user, queryParams) => { + const { uid, favoriteCharts } = user + const { sortBy, sortDirection } = queryParams + const direction = sortDirection === ASC ? 1 : -1 + const sort = + sortBy === updatedAt + ? [ + { + $addFields: { + date: { $dateFromString: { dateString: $updatedAt } }, + }, + }, + { $sort: { favorite: -1, date: direction } }, + ] + : [{ $sort: { favorite: -1, [sortBy]: direction } }] + const searchQuery = queryParams?.search + ? { + title: { $regex: queryParams.search, $options: 'i' }, + $or: [{ owner: uid }, { sharedWith: uid }, { public: true }], + } + : { + $or: [{ owner: uid }, { sharedWith: uid }, { public: true }], + } + + return [ + { + $match: searchQuery, + }, + { $addFields: { chart_id: { $toString: id } } }, + { + $addFields: { + favorite: { $in: [idKey, favoriteCharts || []] }, + }, + }, + ...sort, + ] +} + +export default ChartsModel diff --git a/server/models/ConfigModel/index.js b/server/models/ConfigModel/index.js new file mode 100644 index 00000000..a8e11216 --- /dev/null +++ b/server/models/ConfigModel/index.js @@ -0,0 +1,71 @@ +import { ObjectId } from 'mongodb' + +import defaultUserConfig from '../../constants/defaultUserConfig' +import { collections } from '../../utils/mongoCollections' + +const ConfigModel = { + active: async (db, userId) => + await db + .collection(collections.configs) + .aggregate([ + { + $match: { + $or: [{ readers: userId }, { public: true }, { owner: userId }], + }, + }, + { + $match: { $or: [{ status: { $exists: false } }, { status: 1 }] }, + }, + ]) + .stream(), + all: async (db, userId) => + await db + .collection(collections.configs) + .find({ + $or: [{ readers: userId }, { public: true }, { owner: userId }], + }) + .stream(), + destroy: async (db, configId) => { + const { deletedCount } = await db + .collection(collections.configs) + .deleteOne({ _id: new ObjectId(configId) }) + + if (deletedCount !== 1) { + throw new Error('Unable to delete configuration') + } + }, + update: async (db, configId, configAttributes) => { + const value = await db + .collection(collections.configs) + .findOneAndUpdate( + { _id: new ObjectId(configId) }, + { $set: configAttributes }, + { returnOriginal: false, upsert: true, returnDocument: 'after' } + ) + + if (!value) { + throw new Error('Could not update configuration') + } + + return value + }, + + create: async (db, configAttributes) => { + const { insertedId } = await db + .collection(collections.configs) + .insertOne(configAttributes) + + return await ConfigModel.findOne(db, { _id: insertedId }) + }, + findOne: async (db, configQuery) => + await db.collection(collections.configs).findOne(configQuery), + withDefaults: (overrides = {}) => ({ + config: defaultUserConfig, + name: 'default', + type: 'matrix', + created: new Date().toUTCString(), + ...overrides, + }), +} + +export default ConfigModel diff --git a/server/models/ParticipantsModel/ParticipantsModel.test.js b/server/models/ParticipantsModel/ParticipantsModel.test.js new file mode 100644 index 00000000..3abed930 --- /dev/null +++ b/server/models/ParticipantsModel/ParticipantsModel.test.js @@ -0,0 +1,27 @@ +import ParticipantsModel from '.' + +describe('ParticipantsModel', () => { + describe(ParticipantsModel.intersectParticipants, () => { + it('intersects participants that appear in multiple partcipant lists', () => { + const groupA = ['A1', 'T1', 'A2', 'T3', 'A4', 'A5', 'A6'] + const groupB = ['T1', 'T3', 'T6'] + const groupC = ['B1', 'T3', 'B2', 'T1', 'B3', 'B4', 'B5'] + const groupedParticipants = [groupA, groupB, groupC] + + expect( + ParticipantsModel.intersectParticipants(groupedParticipants) + ).toEqual(['T1', 'T3']) + }) + + it('returns empty if no matching participants', () => { + const groupA = ['A1', 'A2', 'A4', 'A5', 'A6'] + const groupB = ['T1', 'T3', 'T6'] + const groupC = ['B1', 'B2', 'B3', 'B4', 'B5'] + const groupedParticipants = [groupA, groupB, groupC] + + expect( + ParticipantsModel.intersectParticipants(groupedParticipants) + ).toEqual([]) + }) + }) +}) diff --git a/server/models/ParticipantsModel/index.js b/server/models/ParticipantsModel/index.js new file mode 100644 index 00000000..f8af851b --- /dev/null +++ b/server/models/ParticipantsModel/index.js @@ -0,0 +1,170 @@ +import { + ASC, + ALL_SUBJECTS_MONGO_PROJECTION, + STUDIES_TO_OMIT, +} from '../../constants' +import { collections } from '../../utils/mongoCollections' + +const participant = 'participant' +const $participants = '$participants' + +const ParticipantsModel = { + index: async (db, user, queryParams) => + await db + .collection(collections.metadata) + .aggregate(allParticipantsQuery(user, queryParams)) + .toArray(), + allForAssessment: async (db, chart, filtersService) => { + const { filterQueries } = filtersService + const query = { + assessment: chart.assessment, + study: { $in: filtersService.requestedSites, $nin: STUDIES_TO_OMIT }, + } + if (filtersService.allFiltersInactive()) { + return await db + .collection(collections.assessmentDayData) + .find(query, { projection: ALL_SUBJECTS_MONGO_PROJECTION }) + .stream() + } + + const groupedParticipants = await Promise.all( + filterQueries.map((query) => { + return db + .collection(collections.assessmentDayData) + .distinct('participant', query) + }) + ) + + return await db + .collection(collections.assessmentDayData) + .find({ + ...query, + participant: { + $in: + groupedParticipants.length > 1 + ? ParticipantsModel.intersectParticipants(groupedParticipants) + : groupedParticipants.flat(), + }, + }) + .stream() + }, + intersectParticipants: (groupedParticipants) => { + const sortedGroupParticipants = groupedParticipants.sort( + (groupA, groupB) => { + if (groupA.length === groupB.length) return 0 + if (groupB.length > groupA.length) return 1 + if (groupA.length < groupB.length) return -1 + } + ) + + return sortedGroupParticipants.reduce( + (participantGroupA, participantGroupB) => + participantGroupA.filter((participant) => + participantGroupB.includes(participant) + ) + ) + }, +} + +const allParticipantsQuery = (user, queryParams) => { + const { star, complete } = user.preferences + const starred = star ? Object.values(star).flat() : [] + const completed = complete ? Object.values(complete).flat() : [] + const { status, sortBy, sortDirection, searchParticipants, studies } = + queryParams + const direction = sortDirection === ASC ? 1 : -1 + const sortByParams = { [sortBy]: direction } + const baseSort = { star: -1 } + const sort = sortBy + ? { $sort: { ...baseSort, ...sortByParams } } + : { $sort: baseSort } + const studiesSet = new Set(studies?.length ? studies : user.access) + + searchParticipants?.forEach((participant) => + studiesSet.add(`${participant[0]}${participant[1]}`) + ) + const studiesQuery = Array.from(studiesSet) + + const query = [ + { + $match: { + $or: [ + { + study: { + $in: studiesQuery, + }, + }, + ], + }, + }, + + { $unwind: $participants }, + { + $project: { + _id: 0, + Active: '$participants.Active', + Consent: '$participants.Consent', + complete: { $in: ['$participants.participant', completed] }, + days: 1, + star: { $in: ['$participants.participant', starred] }, + study: 1, + participant: '$participants.participant', + synced: '$participants.synced', + daysInStudy: '$participants.daysInStudy', + }, + }, + ] + + if (searchParticipants?.length) { + if (studies?.length) { + query.push({ + $match: { + $or: [ + { + study: { + $in: studies, + }, + }, + { + participant: { + $in: searchParticipants, + }, + }, + ], + }, + }) + } else { + query.push({ + $match: { + $or: [ + { + participant: { + $in: searchParticipants, + }, + }, + ], + }, + }) + } + } + + if (status) { + query.splice(1, 0, { + $project: { + participants: { + $filter: { + input: $participants, + as: participant, + cond: { $eq: ['$$participant.Active', +status] }, + }, + }, + }, + }) + } + + query.push(sort) + + return query +} + +export default ParticipantsModel diff --git a/server/models/SiteMetadataModel/index.js b/server/models/SiteMetadataModel/index.js new file mode 100644 index 00000000..e4cd8afb --- /dev/null +++ b/server/models/SiteMetadataModel/index.js @@ -0,0 +1,28 @@ +import { collections } from '../../utils/mongoCollections' + +const queryOptions = { + upsert: true, + returnDocument: 'after', +} +const SiteMetadataModel = { + findOne: async (db, query) => + await db.collection(collections.metadata).findOne(query), + upsert$Set: async (db, query, setAttributes) => + await db.collection(collections.metadata).findOneAndUpdate( + query, + { + $set: setAttributes, + }, + queryOptions + ), + upsert$addToSet: async (db, query, addToSetAttributes) => + await db.collection(collections.metadata).findOneAndUpdate( + query, + { + $addToSet: addToSetAttributes, + }, + queryOptions + ), +} + +export default SiteMetadataModel diff --git a/server/models/StudiesModel/index.js b/server/models/StudiesModel/index.js new file mode 100644 index 00000000..0fdf2b87 --- /dev/null +++ b/server/models/StudiesModel/index.js @@ -0,0 +1,15 @@ +import { STUDIES_TO_OMIT } from '../../constants' +import { collections } from '../../utils/mongoCollections' + +const study = 'study' + +const StudiesModel = { + all: async (db) => await db.collection(collections.metadata).distinct(study), + sanitizeAndSort: (studies) => { + return studies + .filter((study) => !STUDIES_TO_OMIT.includes(study)) + .sort((prevStudy, nextStudy) => (prevStudy < nextStudy ? -1 : 1)) + }, +} + +export default StudiesModel diff --git a/server/models/UserModel/index.js b/server/models/UserModel/index.js new file mode 100644 index 00000000..5ada2fd8 --- /dev/null +++ b/server/models/UserModel/index.js @@ -0,0 +1,172 @@ +import crypto from 'crypto' + +import AdminAccountPasswordMailer from '../../mailer/AdminAccountPasswordMailer' +import { collections } from '../../utils/mongoCollections' +import ConfigModel from '../ConfigModel' +import StudiesModel from '../StudiesModel' + +export const userMongoProjection = { + _id: 0, + password: 0, + bad_pwd_count: 0, + lockout_time: 0, + last_logoff: 0, + last_logon: 0, + force_reset_pw: 0, +} + +const admin = 'admin' + +const UserModel = { + all: async (db) => + await db + .collection(collections.users) + .find({}, { projection: userMongoProjection }) + .toArray(), + destroy: async (db, uid) => { + const { deletedCount } = await db + .collection(collections.users) + .deleteOne({ uid }) + + if (deletedCount !== 1) throw new Error('Unable to delete user') + }, + create: async (db, userAttributes) => { + const newUser = UserModel.withDefaults(userAttributes) + const { insertedId } = await db + .collection(collections.users) + .insertOne(newUser) + + return await db.collection(collections.users).findOne({ _id: insertedId }) + }, + findOne: async (db, userAttributes, includeFields = {}) => { + const includeOrExcludeFields = Object.keys(includeFields)?.length + ? includeFields + : userMongoProjection + + return await db.collection(collections.users).findOne(userAttributes, { + projection: includeOrExcludeFields, + }) + }, + update: async (db, uid, userUpdates) => { + const user = await UserModel.findOne(db, { uid }) + const updatedUser = { preferences: {}, ...user, ...userUpdates } + + if (updatedUser.role === admin) + updatedUser.access = await StudiesModel.all(db) + + const value = await db.collection(collections.users).findOneAndUpdate( + { uid }, + { + $set: updatedUser, + }, + { + projection: userMongoProjection, + returnOriginal: false, + upsert: true, + returnDocument: 'after', + } + ) + if (!value) throw new Error('Could not update user.') + + return value + }, + hasAdmin: async (db) => { + const pseudoAdmins = await db + .collection(collections.users) + .aggregate([ + { $match: { uid: { $in: [admin, null] } } }, + { $sort: { uid: -1 } }, + { $project: { _id: 1 } }, + ]) + .toArray() + + if (pseudoAdmins.length > 1) { + const [_first, ...rest] = pseudoAdmins.map((el) => el._id) + + await db.collection(collections.users).deleteMany({ _id: { $in: rest } }) + } + + const userCt = await db + .collection(collections.users) + .countDocuments({ role: admin, password: { $ne: null } }) + + return userCt > 0 + }, + adminPasswordIsNotReset: async (db) => { + const adminUser = await db + .collection(collections.users) + .findOne({ uid: admin }) + + return adminUser.password === adminUser.reset_key + }, + createFirstAdmin: async (db) => { + if (await UserModel.hasAdmin(db)) { + if (await UserModel.adminPasswordIsNotReset(db)) { + const adminUser = await UserModel.findOne(db, { uid: admin }) + await UserModel.sendResetPasswordKey(adminUser.reset_key) + } + return + } + + const reset_key = crypto.randomBytes(32).toString('hex') + const configuration = await ConfigModel.findOne(db, { owner: admin }) + const preferences = {} + + if (configuration) { + preferences.config = configuration._id.toString() + } else { + const configAttributes = ConfigModel.withDefaults({ + owner: admin, + readers: [admin], + }) + const newConfiguration = await ConfigModel.create(db, configAttributes) + preferences.config = newConfiguration._id.toString() + } + + await UserModel.create(db, { + uid: admin, + password: reset_key, + role: admin, + mail: process.env.ADMIN_EMAIL, + preferences, + force_reset_pw: true, + reset_key, + }) + + await UserModel.sendResetPasswordKey(reset_key) + }, + sendResetPasswordKey: async (reset_key) => { + if (process.env.NODE_ENV === 'development') + console.log(`RESET KEY: ${reset_key}`) + else { + const adminMailer = new AdminAccountPasswordMailer(reset_key) + await adminMailer.sendMail() + } + }, + withDefaults: (overrides = {}) => ({ + access: [], + account_expires: null, + bad_pwd_count: 0, + blocked: false, + company: '', + display_name: '', + title: '', + department: '', + favoriteCharts: [], + force_reset_pw: false, + icon: '', + iconFileName: '', + last_logoff: Date.now(), + last_logon: Date.now(), + ldap: false, + lockout_time: 0, + mail: '', + member_of: '', + password: '', + realms: [''], + role: 'member', + ...overrides, + }), +} + +export default UserModel diff --git a/server/models/UserStudiesModel/index.js b/server/models/UserStudiesModel/index.js new file mode 100644 index 00000000..4c0c3ff1 --- /dev/null +++ b/server/models/UserStudiesModel/index.js @@ -0,0 +1,37 @@ +import { ASC, STUDIES_TO_OMIT } from '../../constants' +import { collections } from '../../utils/mongoCollections' + +const UserStudiesModel = { + all: async (db, studiesList, sortDirective) => + await db + .collection(collections.metadata) + .aggregate(userStudiesQuery(studiesList, sortDirective)) + .toArray(), +} + +const userStudiesQuery = (studiesList, sortDirective) => { + const sortDirection = sortDirective.sortDirection === ASC ? 1 : -1 + const sort = { [sortDirective.sortBy]: sortDirection } + + return [ + { $match: { study: { $in: studiesList, $nin: STUDIES_TO_OMIT } } }, + { + $project: { + _id: 0, + study: 1, + numOfParticipants: { + $cond: { + if: { $isArray: '$participants' }, + then: { $size: '$participants' }, + else: 0, + }, + }, + daysInStudy: { $max: '$participants.daysInStudy' }, + updatedAt: 1, + }, + }, + { $sort: sort }, + ] +} + +export default UserStudiesModel diff --git a/server/routes/admin.js b/server/routes/admin.js new file mode 100644 index 00000000..58cbd0ef --- /dev/null +++ b/server/routes/admin.js @@ -0,0 +1,45 @@ +import { Router } from 'express' +import * as yup from 'yup' + +import AdminUsersController from '../controllers/adminController' +import studiesController from '../controllers/studiesController' +import validateRequest, { baseSchema } from '../middleware/validateRequest' +import ensureAdmin from '../utils/passport/ensure-admin' +import { v1Routes } from '../utils/routes' + +const router = Router() +const uid = yup.string().required() +const body = yup.object({ + access: yup.array().of(yup.string()), + blocked: yup.boolean(), + account_expires: yup.string(), + uid: yup.string(), + company: yup.string(), + department: yup.string(), + display_name: yup.string(), + icon: yup.string(), + mail: yup.string(), + role: yup.string(), + title: yup.string(), + reset_key: yup.string(), + preferences: yup.object(), +}) + +const patchSchema = baseSchema({ + params: yup.object({ uid }), + body, +}) +const params = baseSchema({ + params: yup.object({ uid }), +}) + +router + .route(v1Routes.admin.users.show) + .patch(validateRequest(patchSchema), ensureAdmin, AdminUsersController.update) + .delete(validateRequest(params), ensureAdmin, AdminUsersController.destroy) + +router + .route(v1Routes.admin.studies.index) + .get(ensureAdmin, studiesController.index) + +export default router diff --git a/server/routes/assessmentData.js b/server/routes/assessmentData.js new file mode 100644 index 00000000..ef4a3e31 --- /dev/null +++ b/server/routes/assessmentData.js @@ -0,0 +1,14 @@ +import { Router } from 'express' + +import AssessmentDayDataController from '../controllers/api/assessmentDayDataController' +import { ensureApiAuthenticated } from '../utils/passport/ensure-api-authenticated' +import { v1Routes } from '../utils/routes' + +const router = Router() + +router + .route(v1Routes.assessmentData.index) + .post(ensureApiAuthenticated, AssessmentDayDataController.create) + .delete(ensureApiAuthenticated, AssessmentDayDataController.destroy) + +export default router diff --git a/server/routes/assessments.js b/server/routes/assessments.js new file mode 100644 index 00000000..a8219755 --- /dev/null +++ b/server/routes/assessments.js @@ -0,0 +1,23 @@ +import { Router } from 'express' +import * as yup from 'yup' + +import assessmentsController from '../controllers/assessmentsController' +import validateRequest, { baseSchema } from '../middleware/validateRequest' +import ensureAuthenticated from '../utils/passport/ensure-authenticated' +import { v1Routes } from '../utils/routes' + +const router = Router() + +const assessmentIndexSchema = baseSchema({ + query: yup.object({ search: yup.string() }), +}) + +router + .route(v1Routes.assessments.index) + .get( + validateRequest(assessmentIndexSchema), + ensureAuthenticated, + assessmentsController.index + ) + +export default router diff --git a/server/routes/auth.js b/server/routes/auth.js new file mode 100644 index 00000000..e62c6d38 --- /dev/null +++ b/server/routes/auth.js @@ -0,0 +1,46 @@ +import { Router } from 'express' +import * as yup from 'yup' + +import AuthController from '../controllers/authController' +import validateRequest, { baseSchema } from '../middleware/validateRequest' +import ensureAuthenticated from '../utils/passport/ensure-authenticated' +import { v1Routes } from '../utils/routes' + +const router = Router() + +const signUpSchema = baseSchema({ + body: yup.object({ + username: yup.string().required(), + password: yup.string().min(8).required(), + confirmPassword: yup + .string() + .oneOf([yup.ref('password'), null], 'passwords do not match'), + fullName: yup.string().required(), + mail: yup.string().email().required(), + }), +}) + +const signInSchema = baseSchema({ + body: yup.object({ + username: yup.string().required(), + password: yup.string().min(8).required(), + }), +}) + +router + .route(v1Routes.auth.login) + .post(validateRequest(signInSchema), AuthController.authenticate) + +router + .route(v1Routes.auth.signup) + .post(validateRequest(signUpSchema), AuthController.create) + +router + .route(v1Routes.auth.logout) + .get(ensureAuthenticated, AuthController.destroy) + +router.route(v1Routes.auth.me).get(ensureAuthenticated, AuthController.show) + +router.route(v1Routes.auth.resetpw).post(AuthController.update) + +export default router diff --git a/server/routes/charts.js b/server/routes/charts.js new file mode 100644 index 00000000..85ac5747 --- /dev/null +++ b/server/routes/charts.js @@ -0,0 +1,128 @@ +import { Router } from 'express' +import * as yup from 'yup' + +import chartsController from '../controllers/chartsController' +import chartsDataController from '../controllers/chartsDataController' +import chartsDuplicateController from '../controllers/chartsDuplicateController' +import chartsShareController from '../controllers/chartsShareController' +import validateRequest, { baseSchema } from '../middleware/validateRequest' +import ensureAuthenticated from '../utils/passport/ensure-authenticated' +import { v1Routes } from '../utils/routes' + +const router = Router() +const chartsIndexSchema = baseSchema({ + query: yup.object({ + search: yup.string(), + sortBy: yup.string(), + sortDirection: yup.string(), + }), +}) +const chartSchema = baseSchema({ + body: yup.object({ + title: yup.string().required(), + description: yup.string().required(), + assessment: yup.string().required(), + variable: yup.string().required(), + public: yup.boolean(), + fieldLabelValueMap: yup.array().of( + yup.object({ + value: yup.string(), + label: yup.string(), + color: yup.string(), + targetValues: yup.object(), + }) + ), + }), +}) +const destroyChartSchema = baseSchema({ + params: yup.object({ + chart_id: yup.string().required(), + }), +}) +const duplicateChartSchema = baseSchema({ + body: yup.object({ + chart_id: yup.string().required(), + }), +}) +const shareChartSchema = baseSchema({ + body: yup.object({ + sharedWith: yup.array().of(yup.string()).required(), + }), + params: yup.object({ + chart_id: yup.string().required(), + }), +}) +const editChartSchema = baseSchema({ + params: yup.object({ + chart_id: yup.string().required(), + }), +}) +const nameValueSchema = yup.object({ name: yup.string(), value: yup.string() }) +const viewChartSchema = baseSchema({ + params: yup.object({ + chart_id: yup.string().required(), + }), + query: yup.object({ + chrcrit_part: yup.array().of(nameValueSchema), + included_excluded: yup.array().of(nameValueSchema), + sex_at_birth: yup.array().of(nameValueSchema), + sites: yup.array().of(yup.string()), + }), +}) + +router + .route(v1Routes.chartsData.show) + .get( + validateRequest(viewChartSchema), + ensureAuthenticated, + chartsDataController.show + ) + +router + .route(v1Routes.charts.index) + .post( + validateRequest(chartSchema), + ensureAuthenticated, + chartsController.create + ) + .get( + validateRequest(chartsIndexSchema), + ensureAuthenticated, + chartsController.index + ) + +router + .route(v1Routes.charts.show) + .delete( + validateRequest(destroyChartSchema), + ensureAuthenticated, + chartsController.destroy + ) + .get( + validateRequest(editChartSchema), + ensureAuthenticated, + chartsController.show + ) + .patch( + validateRequest(chartSchema), + ensureAuthenticated, + chartsController.update + ) + +router + .route(v1Routes.chartsDuplicate.index) + .post( + validateRequest(duplicateChartSchema), + ensureAuthenticated, + chartsDuplicateController.create + ) + +router + .route(v1Routes.chartsShare.index) + .post( + validateRequest(shareChartSchema), + ensureAuthenticated, + chartsShareController.create + ) + +export default router diff --git a/server/routes/configurations.js b/server/routes/configurations.js new file mode 100644 index 00000000..1cd1e3cb --- /dev/null +++ b/server/routes/configurations.js @@ -0,0 +1,77 @@ +import { Router } from 'express' +import * as yup from 'yup' + +import ConfigurationsController from '../controllers/configurationsController' +import validateRequest, { baseSchema } from '../middleware/validateRequest' +import ensureUser from '../utils/passport/ensure-user' +import { v1Routes } from '../utils/routes' + +const router = Router() + +const body = yup.object({ + name: yup.string().required(), + type: yup.string().required(), + readers: yup.array().of(yup.string()), + public: yup.boolean(), + owner: yup.string().required(), + config: yup.object({ + 0: yup.array().of( + yup.object({ + category: yup.string(), + analysis: yup.string(), + variable: yup.string(), + label: yup.string(), + color: yup.array().of(yup.string()), + range: yup.array().of(yup.string()), + text: yup.boolean(), + }) + ), + }), + status: yup.number(), +}) +const params = yup.object({ + config_id: yup.string().required(), +}) +const allSchema = baseSchema({ + params: yup.object({ + uid: yup.string().required(), + }), + query: yup.object({ + status: yup.string(), + }), +}) +const configurationSchema = baseSchema({ body }) +const paramsSchema = baseSchema({ params }) +const updateSchema = baseSchema({ + params, + body, +}) + +router + .route(v1Routes.config.index) + .get(validateRequest(allSchema), ensureUser, ConfigurationsController.index) + .post( + validateRequest(configurationSchema), + ensureUser, + ConfigurationsController.create + ) + +router + .route(v1Routes.config.show) + .get( + validateRequest(paramsSchema), + ensureUser, + ConfigurationsController.findOne + ) + .delete( + validateRequest(paramsSchema), + ensureUser, + ConfigurationsController.destroy + ) + .patch( + validateRequest(updateSchema), + ensureUser, + ConfigurationsController.update + ) + +export default router diff --git a/server/routes/counts.js b/server/routes/counts.js new file mode 100644 index 00000000..62bdf431 --- /dev/null +++ b/server/routes/counts.js @@ -0,0 +1,13 @@ +import { Router } from 'express' + +import CountsController from '../controllers/countsController' +import ensureAuthenticated from '../utils/passport/ensure-authenticated' +import { v1Routes } from '../utils/routes' + +const router = Router() + +router + .route(v1Routes.counts.index) + .get(ensureAuthenticated, CountsController.index) + +export default router diff --git a/server/routes/dashboards.js b/server/routes/dashboards.js new file mode 100644 index 00000000..d3c62c3e --- /dev/null +++ b/server/routes/dashboards.js @@ -0,0 +1,13 @@ +import { Router } from 'express' + +import DashboardsController from '../controllers/dashboardController' +import ensureStudyPermission from '../utils/passport/ensureStudyPermission' +import { v1Routes } from '../utils/routes' + +const router = Router() + +router + .route(v1Routes.dashboards.show) + .get(ensureStudyPermission, DashboardsController.show) + +export default router diff --git a/server/routes/index.js b/server/routes/index.js new file mode 100644 index 00000000..174ebc05 --- /dev/null +++ b/server/routes/index.js @@ -0,0 +1,11 @@ +import { Router } from 'express' + +import ApiUsersController from '../controllers/apiUsersController' +import ensureAuthenticated from '../utils/passport/ensure-authenticated' +import { v1Routes } from '../utils/routes' + +const router = Router() + +router.get(v1Routes.users.index, ensureAuthenticated, ApiUsersController.index) + +export default router diff --git a/server/routes/participants.js b/server/routes/participants.js new file mode 100644 index 00000000..3efdc22e --- /dev/null +++ b/server/routes/participants.js @@ -0,0 +1,29 @@ +import { Router } from 'express' +import * as yup from 'yup' + +import ParticipantsController from '../controllers/participantsController' +import validateRequest, { baseSchema } from '../middleware/validateRequest' +import ensureAuthenticated from '../utils/passport/ensure-authenticated' +import { v1Routes } from '../utils/routes' + +const router = Router() + +const schema = baseSchema({ + query: yup.object({ + status: yup.string(), + sortBy: yup.string(), + sortDirection: yup.string(), + searchSubjects: yup.array().optional(), + studies: yup.array().optional(), + }), +}) + +router + .route(v1Routes.participants.index) + .get( + validateRequest(schema), + ensureAuthenticated, + ParticipantsController.index + ) + +export default router diff --git a/server/routes/siteMetadata.js b/server/routes/siteMetadata.js new file mode 100644 index 00000000..7eff41c5 --- /dev/null +++ b/server/routes/siteMetadata.js @@ -0,0 +1,14 @@ +import { Router } from 'express' + +import SiteMetadataController from '../controllers/api/siteMetadataController' +import { ensureApiAuthenticated } from '../utils/passport/ensure-api-authenticated' +import { v1Routes } from '../utils/routes' + +const router = Router() + +router + .route(v1Routes.siteMetadata.index) + .post(ensureApiAuthenticated, SiteMetadataController.create) + .delete(ensureApiAuthenticated, SiteMetadataController.destroy) + +export default router diff --git a/server/routes/userStudies.js b/server/routes/userStudies.js new file mode 100644 index 00000000..7db07859 --- /dev/null +++ b/server/routes/userStudies.js @@ -0,0 +1,13 @@ +import { Router } from 'express' + +import userStudiesController from '../controllers/userStudiesController' +import ensureAuthenticated from '../utils/passport/ensure-authenticated' +import { v1Routes } from '../utils/routes' + +const router = Router() + +router + .route(v1Routes.userStudies.index) + .get(ensureAuthenticated, userStudiesController.index) + +export default router diff --git a/server/routes/users.js b/server/routes/users.js new file mode 100644 index 00000000..d0f6a15d --- /dev/null +++ b/server/routes/users.js @@ -0,0 +1,41 @@ +import { Router } from 'express' +import * as yup from 'yup' + +import UsersController from '../controllers/usersController' +import validateRequest, { baseSchema } from '../middleware/validateRequest' +import ensureUser from '../utils/passport/ensure-user' +import { v1Routes } from '../utils/routes' + +const router = Router() +const patchSchema = baseSchema({ + params: yup.object({ + uid: yup.string(), + }), + body: yup.object({ + company: yup.string(), + department: yup.string(), + display_name: yup.string(), + favoriteCharts: yup.array().of(yup.string()), + icon: yup.string(), + iconFileName: yup.string(), + mail: yup.string(), + preferences: yup.object({ + config: yup.string(), + star: yup.object(), + complete: yup.object(), + }), + title: yup.string(), + }), +}) +const getUserSchema = baseSchema({ + params: yup.object({ + uid: yup.string(), + }), +}) + +router + .route(v1Routes.users.show) + .get(validateRequest(getUserSchema), ensureUser, UsersController.show) + .patch(validateRequest(patchSchema), ensureUser, UsersController.edit) + +export default router diff --git a/server/services/BarChartService/BarChartService.test.js b/server/services/BarChartService/BarChartService.test.js new file mode 100644 index 00000000..942395f9 --- /dev/null +++ b/server/services/BarChartService/BarChartService.test.js @@ -0,0 +1,202 @@ +import { ObjectId } from 'mongodb' + +import BarChartService from '.' +import { createChart, createFieldLabelValue } from '../../../test/fixtures' +import { dayDataAssessments } from '../../../test/testUtils' +import { collections } from '../../utils/mongoCollections' +import FiltersService, { DEFAULT_FILTERS } from '../FiltersService' + +describe(BarChartService, () => { + describe('methods', () => { + describe('createChart', () => { + let appDb + const chart = createChart( + { + _id: new ObjectId(), + title: 'Eeg Measurements', + description: 'Participant EEG Measurements', + assessment: 'eeg', + variable: 'eeg', + public: false, + owner: 'owl', + }, + [ + createFieldLabelValue({ + value: 'bar', + label: 'Bar', + color: 'red', + targetValues: { + LA: '2', + YA: '1', + MA: '2', + }, + }), + ] + ) + + beforeAll(async () => { + appDb = await global.MONGO_INSTANCE.db('barService') + + await appDb + .collection(collections.assessmentDayData) + .insertMany(dayDataAssessments) + }) + + afterAll(async () => { + await appDb.dropDatabase() + }) + it('returns data, labels, and study totals', async () => { + const filters = { + ...DEFAULT_FILTERS, + recruitment_status: { + Recruited: { label: 'Recruited', value: 0 }, + 'Not recruited': { label: 'Not Recruited', value: 0 }, + }, + sites: { + YA: { label: 'YA', value: 1 }, + LA: { label: 'LA', value: 1 }, + MA: { label: 'MA', value: 1 }, + }, + } + const filterService = new FiltersService(filters, ['YA', 'LA', 'MA']) + const chartService = new BarChartService(appDb, chart, filterService) + const chartData = await chartService.createChart() + expect(chartData).toEqual({ + labelMap: new Map() + .set('Foo', { + color: '#e2860a', + name: 'Foo', + }) + .set('Bar', { + color: 'red', + name: 'Bar', + }) + .set('N/A', { + color: '#808080', + name: 'N/A', + }), + + processedDataBySite: new Map() + .set('Yale', { + counts: { + Bar: 2, + Foo: 2, + 'N/A': 0, + }, + siteCode: 'YA', + name: 'Yale', + percentages: { + Bar: 50, + Foo: 50, + 'N/A': 0, + }, + targets: { + Bar: 1, + Foo: 3, + }, + totalsForStudy: { + count: 4, + targetTotal: 4, + }, + }) + .set('Totals', { + counts: { + Bar: 2, + Foo: 6, + 'N/A': 6, + }, + siteCode: 'Totals', + name: 'Totals', + percentages: { + Bar: 14.285714285714285, + Foo: 42.857142857142854, + 'N/A': 42.857142857142854, + }, + targets: { + Bar: 3, + Foo: 6, + }, + totalsForStudy: { + count: 8, + targetTotal: 14, + }, + }) + .set('Madrid', { + counts: { + Bar: 0, + Foo: 4, + 'N/A': 1, + }, + siteCode: 'MA', + name: 'Madrid', + percentages: { + Bar: 0, + Foo: 80, + 'N/A': 20, + }, + targets: { + Bar: 2, + Foo: 3, + }, + totalsForStudy: { + count: 4, + targetTotal: 5, + }, + }), + studyTotals: { + Madrid: { + count: 4, + targetTotal: 5, + }, + Totals: { + count: 8, + targetTotal: 14, + }, + UCLA: { + count: 0, + targetTotal: 5, + }, + Yale: { + count: 4, + targetTotal: 4, + }, + }, + }) + }) + }) + }) + describe('.legend', () => { + const chart = createChart( + { + _id: new ObjectId(), + title: 'Eeg Measurements', + description: 'Participant EEG Measurements', + assessment: 'eeg', + variable: 'eeg', + public: false, + owner: 'owl', + }, + [ + createFieldLabelValue({ + value: 'bar', + label: 'Bar', + color: 'red', + targetValues: { + LA: '2', + YA: '1', + MA: '2', + }, + }), + ] + ) + + it('returns a legend object', () => { + const service = new BarChartService({}, chart, {}) + + expect(service.legend()).toEqual([ + { name: 'Foo', symbol: { fill: '#e2860a', type: 'rect' } }, + { name: 'Bar', symbol: { fill: 'red', type: 'rect' } }, + ]) + }) + }) +}) diff --git a/server/services/BarChartService/index.js b/server/services/BarChartService/index.js new file mode 100644 index 00000000..0988afce --- /dev/null +++ b/server/services/BarChartService/index.js @@ -0,0 +1,120 @@ +import { STUDIES_TO_OMIT, TOTALS_STUDY } from '../../constants' +import BarChartDataProcessor from '../../data_processors/BarChartDataProcessor' +import ParticipantsModel from '../../models/ParticipantsModel' +import { SITE_NAMES } from '../../utils/siteNames' + +class BarChartService { + constructor(appDb, chart, filtersService) { + this.chart = chart + this.appDb = appDb + this.filtersService = filtersService + } + + legend = () => { + return this.chart.fieldLabelValueMap.map(({ label, color }) => ({ + name: label, + symbol: { + type: 'rect', + fill: color, + }, + })) + } + + generateStudyTargetTotals = (userAccess) => { + const allowedStudies = userAccess.filter( + (study) => !STUDIES_TO_OMIT.includes(study) + ) + + const studyTotals = { + [TOTALS_STUDY]: { + count: 0, + targetTotal: 0, + }, + } + this.chart.fieldLabelValueMap.forEach((fieldValue) => { + const { targetValues } = fieldValue + + allowedStudies.forEach((study) => { + const siteName = SITE_NAMES[study] || study + const rawNewTargetValue = targetValues[study] + const newTargetValue = rawNewTargetValue + ? +rawNewTargetValue + : undefined + + studyTotals[siteName] = this._studyTargetTotal( + studyTotals[siteName], + newTargetValue + ) + + if (Object.prototype.hasOwnProperty.call(targetValues, study)) { + studyTotals[TOTALS_STUDY].targetTotal = this._totalStudyTargetValue( + studyTotals[TOTALS_STUDY].targetTotal, + newTargetValue + ) + } + }) + }) + + return studyTotals + } + + _studyTargetTotal = (studyTotals, newTargetValue) => { + if (studyTotals) { + if (studyTotals.targetTotal === undefined) { + return studyTotals + } + + return { + ...studyTotals, + targetTotal: newTargetValue + ? studyTotals.targetTotal + newTargetValue + : undefined, + } + } else { + return { + count: 0, + targetTotal: newTargetValue, + } + } + } + + _totalStudyTargetValue = (totalsStudyTargetTotal, siteTargetValue) => { + if (totalsStudyTargetTotal === undefined) { + return totalsStudyTargetTotal + } + + return siteTargetValue + ? totalsStudyTargetTotal + siteTargetValue + : undefined + } + + createChart = async () => { + const { requestedSites } = this.filtersService + const chartProcessor = new BarChartDataProcessor( + this.chart, + this.generateStudyTargetTotals(requestedSites) + ) + const dataStream = await ParticipantsModel.allForAssessment( + this.appDb, + this.chart, + this.filtersService + ) + + dataStream.on('data', (doc) => chartProcessor.processDocument(doc)) + await new Promise((resolve, reject) => { + dataStream.on('end', () => resolve()) + + dataStream.on('error', (err) => reject(err)) + }) + + const { processedDataBySite, studyTotals, labelMap, dataMap } = + chartProcessor.processData() + + if (dataMap.size === 0) + return { processedDataBySite: new Map(), studyTotals, labelMap } + + return { processedDataBySite, studyTotals, labelMap } + } +} + +export default BarChartService diff --git a/server/services/BarChartTableService/BarChartTableService.test.js b/server/services/BarChartTableService/BarChartTableService.test.js new file mode 100644 index 00000000..6d81260f --- /dev/null +++ b/server/services/BarChartTableService/BarChartTableService.test.js @@ -0,0 +1,115 @@ +import BarChartTableService from '.' +import { createLabel, createSiteData } from '../../../test/fixtures' +import { SITE_NAME, TOTAL_LABEL, SITE_CODE } from '../../constants' + +const dataBySite = [ + createSiteData({ + name: 'Site 1', + siteCode: 'S1', + counts: { + Good: 1, + Bad: 2, + Total: 3, + }, + totalsForStudy: { + count: 3, + }, + percentages: { + Good: 33.33, + Bad: 66.66, + }, + targets: { + Good: 0, + Bad: 0, + }, + }), + createSiteData({ + name: 'Site 2', + siteCode: 'S2', + counts: { + Good: 4, + Bad: 6, + Total: 10, + }, + totalsForStudy: { + count: 10, + }, + percentages: { + Good: 40, + Bad: 60, + }, + targets: { + Good: 4, + Bad: 6, + }, + }), +] +const labels = [ + createLabel({ name: 'Good', color: 'good-color' }), + createLabel({ name: 'Bad', color: 'bad-color' }), +] + +describe(BarChartTableService, () => { + describe('.websiteTableData', () => { + it('returns columns and rows', () => { + const service = new BarChartTableService(dataBySite, labels) + + expect(service.websiteTableData()).toEqual({ + tableColumns: [ + { + dataProperty: 'site', + label: SITE_NAME, + sortable: true, + }, + { + dataProperty: 'siteCode', + label: SITE_CODE, + sortable: false, + }, + { + dataProperty: 'Good', + label: 'Good', + sortable: false, + }, + { + dataProperty: 'Bad', + label: 'Bad', + sortable: false, + }, + { + dataProperty: 'Total', + label: 'Total', + sortable: false, + }, + ], + tableRows: [ + { Bad: '2', Good: '1', Total: '3', site: 'Site 1', siteCode: 'S1' }, + { + Bad: '6 / 6 (100%)', + Good: '4 / 4 (100%)', + Total: '10', + site: 'Site 2', + siteCode: 'S2', + }, + ], + }) + }) + }) + + describe('.csvTableData', () => { + it('returns columns and rows', () => { + const service = new BarChartTableService(dataBySite, labels) + + // website table data needs to be run first to build the data needed for csv + service.websiteTableData() + + expect(service.csvTableData()).toEqual({ + tableColumns: [SITE_NAME, SITE_CODE, 'Good', 'Bad', TOTAL_LABEL], + tableRows: [ + ['Site 1', 'S1', '1', '2', '3'], + ['Site 2', 'S2', '4 / 4 (100%)', '6 / 6 (100%)', '10'], + ], + }) + }) + }) +}) diff --git a/server/services/BarChartTableService/index.js b/server/services/BarChartTableService/index.js new file mode 100644 index 00000000..08c1e138 --- /dev/null +++ b/server/services/BarChartTableService/index.js @@ -0,0 +1,117 @@ +import { + SITE_NAME, + N_A, + TOTALS_STUDY, + TOTAL_LABEL, + SITE_CODE, +} from '../../constants' + +const formatAsPercentage = (value = 0) => value.toFixed(0) + '%' + +const studyCountsToPercentage = (studyCount, targetTotal) => { + if (!targetTotal || Number.isNaN(+studyCount) || Number.isNaN(+targetTotal)) { + return 0 + } + + return (+studyCount / +targetTotal) * 100 +} + +class BarChartTableService { + constructor(dataBySite, labels) { + this.dataBySite = dataBySite + this.labels = labels + this.websiteColumns = [] + this.websiteRows = [] + } + + websiteTableData = () => { + this.websiteColumns = this._graphTableColumns() + this.websiteRows = this._graphTableRowData(this._sortedTableRowDataBySite()) + + return { + tableColumns: this.websiteColumns, + tableRows: this.websiteRows, + } + } + + csvTableData = () => { + const tableColumns = this.websiteColumns.map(({ label }) => label) + const tableRows = this.websiteRows.map((siteData) => + this.websiteColumns.map(({ dataProperty }) => siteData[dataProperty]) + ) + + return { + tableColumns, + tableRows, + } + } + + _graphTableColumns = () => [ + { + dataProperty: 'site', + label: SITE_NAME, + sortable: true, + }, + { + dataProperty: 'siteCode', + label: SITE_CODE, + sortable: false, + }, + ...this.labels + .filter((column) => column.name !== N_A) + .concat({ name: TOTAL_LABEL }) + .map(({ name }) => ({ + dataProperty: name, + label: name, + sortable: false, + })), + ] + + _graphTableRowData = (sortedGraphTableData) => { + return sortedGraphTableData.map((siteData) => { + return { + site: siteData.name, + siteCode: siteData.siteCode, + ...Object.keys(siteData.counts).reduce((varData, nextVar) => { + varData[nextVar] = this._formatGraphTableCellData( + siteData.targets?.[nextVar], + siteData.counts[nextVar] + ) + + return varData + }, {}), + } + }) + } + + _formatGraphTableCellData = (siteTarget, studyCounts = 0) => { + if (!siteTarget) return `${studyCounts}` + + const percent = studyCountsToPercentage(studyCounts, siteTarget) + + return `${studyCounts} / ${siteTarget} (${formatAsPercentage(percent)})` + } + + _sortedTableRowDataBySite = () => { + return this.dataBySite + .map((site) => { + const { count, targetTotal } = site.totalsForStudy + site.counts[TOTAL_LABEL] = count + site.targets[TOTAL_LABEL] = targetTotal + + return site + }) + .sort(this._sortSitesByNameAndTotalsAtBottom) + } + + _sortSitesByNameAndTotalsAtBottom = (siteA, siteB) => { + if (siteA.name === TOTALS_STUDY) return 1 + if (siteB.name === TOTALS_STUDY) return -1 + if (siteA.name < siteB.name) return -1 + if (siteA.name > siteB.name) return 1 + + return 0 + } +} + +export default BarChartTableService diff --git a/server/services/CSVService.js b/server/services/CSVService.js new file mode 100644 index 00000000..c0a95be5 --- /dev/null +++ b/server/services/CSVService.js @@ -0,0 +1,25 @@ +import { stringify } from 'csv-stringify' + +class CsvService { + constructor(csvData) { + const { tableColumns, tableRows } = csvData + + if (!tableColumns || !tableRows) { + throw new Error( + 'CSV data must have tableColumns and tableRows attributes' + ) + } + + this.columns = tableColumns + this.rows = tableRows + } + + toReadableStream = () => { + return stringify(this.rows, { + header: true, + columns: this.columns, + }) + } +} + +export default CsvService diff --git a/server/services/DashboardService/DashboardService.test.js b/server/services/DashboardService/DashboardService.test.js new file mode 100644 index 00000000..1d641696 --- /dev/null +++ b/server/services/DashboardService/DashboardService.test.js @@ -0,0 +1,138 @@ +import DashboardService from '.' +import { + createAnalysisConfig, + createParticipantDayData, +} from '../../../test/fixtures' +import { collections } from '../../utils/mongoCollections' + +describe(DashboardService, () => { + describe('methods', () => { + describe('createMatrix', () => { + let appDb + + const configAnalysisData = [ + createAnalysisConfig({ + label: 'Jump', + analysis: 'jump_of', + variable: 'jumpVariable', + category: 'power', + }), + createAnalysisConfig({ + label: 'Size', + analysis: 'size_of', + variable: 'sizeVariable', + category: 'sizeing', + }), + ] + + const dataOne = { + study: 'YA', + assessment: 'jump_of', + participant: 'YA01', + dayData: [ + createParticipantDayData({ + day: 10, + jumpVariable: 1, + }), + createParticipantDayData({ + day: 20, + jumpVariable: 30, + }), + ], + } + const dataTwo = { + study: 'YA', + participant: 'YA01', + assessment: 'size_of', + dayData: [ + createParticipantDayData({ + day: 1, + sizeVariable: 30, + }), + createParticipantDayData({ + day: 45, + sizeVariable: 2, + }), + ], + } + + beforeAll(async () => { + appDb = await global.MONGO_INSTANCE.db('dashService') + + await appDb + .collection(collections.assessmentDayData) + .insertMany([dataOne, dataTwo]) + await appDb.collection(collections.metadata).insertOne({ + study: 'YA', + participants: [ + { participant: 'YA01', Consent: new Date('2022-02-26') }, + ], + }) + }) + afterAll(async () => await appDb.dropDatabase()) + + it('returns a list of prepared matrix data', async () => { + const dashboardService = new DashboardService( + appDb, + 'YA', + 'YA01', + configAnalysisData + ) + const matrixData = await dashboardService.createMatrix() + + expect(matrixData).toEqual([ + { + analysis: 'jump_of', + category: 'power', + color: [], + data: [ + { + day: 10, + jumpVariable: 1, + }, + { + day: 20, + jumpVariable: 30, + }, + ], + label: 'Jump', + range: [], + stat: [ + { + max: 30, + mean: 15.5, + min: 1, + }, + ], + variable: 'jumpVariable', + }, + { + analysis: 'size_of', + category: 'sizeing', + color: [], + data: [ + { + day: 1, + sizeVariable: 30, + }, + { + day: 45, + sizeVariable: 2, + }, + ], + label: 'Size', + range: [], + stat: [ + { + max: 30, + mean: 16, + min: 2, + }, + ], + variable: 'sizeVariable', + }, + ]) + }) + }) + }) +}) diff --git a/server/services/DashboardService/index.js b/server/services/DashboardService/index.js new file mode 100644 index 00000000..b75504ab --- /dev/null +++ b/server/services/DashboardService/index.js @@ -0,0 +1,75 @@ +import DashboardDataProcessor from '../../data_processors/DashboardDataProcessor' +import SiteMetadataModel from '../../models/SiteMetadataModel' +import { collections } from '../../utils/mongoCollections' + +class DashboardService { + constructor(appDb, study, participant, configuration) { + this.configuration = configuration + this.db = appDb + this.study = study + this.participant = participant + } + + get assessmentsFromConfig() { + const assessments = new Map() + + this.configuration.forEach((configuration) => { + const key = this.study + this.participant + configuration.analysis + + if (!assessments.has(key)) assessments.set(key, configuration.analysis) + }) + + return [...assessments.values()] + } + + consentDate = async () => { + const query = { + study: this.study, + } + + const studyMetadata = await SiteMetadataModel.findOne(this.db, query) + + return studyMetadata.participants.filter( + ({ participant }) => participant === this.participant + )[0].Consent + } + + dashboardDataCursor = async () => + await this.db + .collection(collections.assessmentDayData) + .find( + { + participant: this.participant, + study: this.study, + assessment: { $in: this.assessmentsFromConfig }, + }, + { projection: { dayData: 1, assessment: 1 } } + ) + .stream() + + createMatrix = async () => { + const dataStream = await this.dashboardDataCursor() + const participantDataMap = new Map() + + dataStream.on('data', (doc) => { + const dayData = doc?.dayData.length ? doc.dayData : [] + + participantDataMap.set(doc.assessment, dayData) + }) + + await new Promise((resolve, reject) => { + dataStream.on('end', () => resolve()) + + dataStream.on('error', (err) => reject(err)) + }) + + const dashboardProcessor = new DashboardDataProcessor( + this.configuration, + participantDataMap + ) + + return dashboardProcessor.calculateDashboardData() + } +} + +export default DashboardService diff --git a/server/services/FiltersService/FiltersService.test.js b/server/services/FiltersService/FiltersService.test.js new file mode 100644 index 00000000..431f598f --- /dev/null +++ b/server/services/FiltersService/FiltersService.test.js @@ -0,0 +1,149 @@ +import FiltersService, { DEFAULT_FILTERS } from '.' + +describe(FiltersService, () => { + describe('#filters', () => { + const initialFilters = { + chrcrit_part: { + HC: { label: 'HC', value: 1 }, + CHR: { label: 'CHR', value: 0 }, + Missing: { label: 'Missing', value: 0 }, + }, + recruitment_status: { + Recruited: { label: 'Recruited', value: 0 }, + 'Not recruited': { label: 'Not Recruited', value: 0 }, + }, + sex_at_birth: { + Male: { label: 'Male', value: 0 }, + Female: { label: 'Female', value: 1 }, + Missing: { label: 'Missing', value: 1 }, + }, + sites: {}, + networks: { + PRESCIENT: { label: 'PRESCIENT', value: 0 }, + ProNET: { label: 'ProNET', value: 0 }, + }, + } + const initialSites = ['one', 'two', 'three'] + + describe('when there are filters with empty sites', () => { + it('sanitizes the filters and sites', () => { + const service = new FiltersService(initialFilters, initialSites) + + expect(service.filters).toEqual({ + ...initialFilters, + sites: { + one: { + label: 'one', + value: 0, + }, + three: { + label: 'three', + value: 0, + }, + two: { + label: 'two', + value: 0, + }, + }, + }) + }) + }) + + describe('when there are filters with existing sites', () => { + it('sanitizes the filters and sites', () => { + const service = new FiltersService( + { + ...initialFilters, + sites: { + one: { + label: 'one', + value: 1, + }, + three: { + label: 'three', + value: 1, + }, + two: { + label: 'two', + value: 1, + }, + }, + }, + initialSites + ) + + expect(service.filters).toEqual({ + ...initialFilters, + sites: { + one: { + label: 'one', + value: 1, + }, + three: { + label: 'three', + value: 1, + }, + two: { + label: 'two', + value: 1, + }, + }, + }) + }) + }) + + describe('when there are no initial filters', () => { + it('sanitizes the filters and sites', () => { + const service = new FiltersService(undefined, initialSites) + + expect(service.filters).toEqual({ + ...DEFAULT_FILTERS, + sites: { + one: { + label: 'one', + value: 1, + }, + three: { + label: 'three', + value: 1, + }, + two: { + label: 'two', + value: 1, + }, + }, + }) + }) + }) + }) + + describe('#allFiltersInactive', () => { + it('return true when the filters have falsey values', () => { + const service = new FiltersService( + { + chrcrit_part: { + HC: { label: 'HC', value: 0 }, + }, + sites: {}, + }, + [] + ) + + expect(service.allFiltersInactive()).toBe(true) + }) + + it('return false if any category filter is true', () => { + const service = new FiltersService( + { + chrcrit_part: { + CHR: { name: 'CHR', value: 1 }, + Missing: { name: 'Missing', value: 0 }, + }, + sites: {}, + }, + [] + ) + expect(service.allFiltersInactive()).toBe(false) + }) + }) +}) diff --git a/server/services/FiltersService/index.js b/server/services/FiltersService/index.js new file mode 100644 index 00000000..dd8eb500 --- /dev/null +++ b/server/services/FiltersService/index.js @@ -0,0 +1,190 @@ +import { + FILTERS_FORM, + INCLUSION_EXCLUSION_CRITERIA_FORM, + SOCIODEMOGRAPHICS_FORM, +} from '../../constants' + +export const FILTER_TO_MONGO_VALUE_MAP = { + HC: 2, + CHR: 1, + Missing: null, + Recruited: 'recruited', + 'Not recruited': 'not recruited', + Male: 1, + Female: 2, +} + +export const INDIVIDUAL_FILTERS_MONGO_PROJECTION = { + study: 1, + collection: 1, + _id: 0, + subject: 1, +} + +export const DEFAULT_FILTERS = { + chrcrit_part: { + HC: { label: 'HC', value: 1 }, + CHR: { label: 'CHR', value: 1 }, + Missing: { label: 'Missing', value: 1 }, + }, + recruitment_status: { + Recruited: { label: 'Recruited', value: 1 }, + 'Not recruited': { label: 'Not Recruited', value: 0 }, + }, + sex_at_birth: { + Male: { label: 'Male', value: 1 }, + Female: { label: 'Female', value: 1 }, + Missing: { label: 'Missing', value: 1 }, + }, + sites: {}, + networks: { + PRESCIENT: { label: 'PRESCIENT', value: 0 }, + ProNET: { label: 'ProNET', value: 0 }, + }, +} + +const CHRCRIT_KEY = 'chrcrit_part' +const DAY_DATA_KEY = 'dayData' +const SEX_AT_BIRTH_FILTER_KEY = 'sex_at_birth' +const SEX_AT_BIRTH_DOCUMENT_KEY = 'chrdemo_sexassigned' +const RECRUITMENT_STATUS_KEY = 'recruitment_status' + +const filterToMongoValues = (filter) => { + return Object.values(filter) + .filter(({ value }) => value === 1) + .map(({ label }) => FILTER_TO_MONGO_VALUE_MAP[label]) +} + +class FiltersService { + constructor(filters, allSites) { + this._filters = filters + this.allSites = allSites + } + + allFiltersInactive = () => { + const { sites: _sites, networks: _networks, ...filters } = this.filters + return Object.keys(filters).every((category) => { + const filterCategory = filters[category] + + return Object.keys(filterCategory).every( + (filterKey) => filterCategory[filterKey].value === 0 + ) + }) + } + + get filters() { + return this._filters + ? this.#requestedFilters() + : { + ...DEFAULT_FILTERS, + sites: this.allSites.reduce((sitesObj, site) => { + sitesObj[site] = { label: site, value: 1 } + + return sitesObj + }, {}), + } + } + + get filterQueries() { + const chrChritQuery = (includedValues) => ({ + [`${DAY_DATA_KEY}.${CHRCRIT_KEY}`]: { $in: includedValues }, + }) + const recruitmentQuery = (includedValues) => { + const includeAllCategories = includedValues.length > 1 + + if (includeAllCategories) { + return { + [`${DAY_DATA_KEY}.${RECRUITMENT_STATUS_KEY}`]: { $exists: true }, + } + } else { + const isRecruited = includedValues.includes( + FILTER_TO_MONGO_VALUE_MAP.Recruited + ) + + if (!isRecruited) + return { + [`${DAY_DATA_KEY}.${RECRUITMENT_STATUS_KEY}`]: { + $ne: FILTER_TO_MONGO_VALUE_MAP.Recruited, + }, + } + + return { + [`${DAY_DATA_KEY}.${RECRUITMENT_STATUS_KEY}`]: + FILTER_TO_MONGO_VALUE_MAP.Recruited, + } + } + } + const sexAtBirthQuery = (includedValues) => ({ + [`${DAY_DATA_KEY}.${SEX_AT_BIRTH_DOCUMENT_KEY}`]: { $in: includedValues }, + }) + const filterQueries = [] + const filterNames = new Set( + Object.keys(this.filters).filter( + (catKey) => + Object.values(this.filters[catKey]) + .map((filter) => filter.value) + .indexOf(1) > -1 + ) + ) + + if (filterNames.has(CHRCRIT_KEY)) { + filterQueries.push({ + assessment: INCLUSION_EXCLUSION_CRITERIA_FORM, + ...chrChritQuery(filterToMongoValues(this.filters[CHRCRIT_KEY])), + }) + } + + if (filterNames.has(SEX_AT_BIRTH_FILTER_KEY)) { + filterQueries.push({ + assessment: SOCIODEMOGRAPHICS_FORM, + ...sexAtBirthQuery( + filterToMongoValues(this.filters[SEX_AT_BIRTH_FILTER_KEY]) + ), + }) + } + + if (filterNames.has(RECRUITMENT_STATUS_KEY)) + filterQueries.push({ + assessment: FILTERS_FORM, + ...recruitmentQuery( + filterToMongoValues(this.filters[RECRUITMENT_STATUS_KEY]) + ), + }) + + return filterQueries + } + #requestedFilters = () => { + const allFilters = { + ...DEFAULT_FILTERS, + sites: this.allSites.reduce((acc, site) => { + acc[site] = { label: site, value: 0 } + return acc + }, {}), + } + return Object.keys(allFilters).reduce((sanitizedFilters, key) => { + sanitizedFilters[key] = Object.keys(allFilters[key]).reduce( + (sanitizedFilters, reqFilter) => { + if (this._filters[key] && this._filters[key][reqFilter]) { + const { label, value } = this._filters[key][reqFilter] + sanitizedFilters[reqFilter] = { label, value: Number(value) } + } else { + sanitizedFilters[reqFilter] = { + label: allFilters[key][reqFilter].label, + value: 0, + } + } + return sanitizedFilters + }, + {} + ) + return sanitizedFilters + }, {}) + } + get requestedSites() { + const { sites } = this.filters + + return Object.keys(sites).filter((key) => sites[key].value === 1) + } +} + +export default FiltersService diff --git a/server/utils/browserUtil.js b/server/utils/browserUtil.js new file mode 100644 index 00000000..8645f033 --- /dev/null +++ b/server/utils/browserUtil.js @@ -0,0 +1,3 @@ +const isBrowser = () => typeof window !== 'undefined' + +export { isBrowser } diff --git a/server/utils/crypto/hash.js b/server/utils/crypto/hash.js new file mode 100755 index 00000000..327be266 --- /dev/null +++ b/server/utils/crypto/hash.js @@ -0,0 +1,43 @@ +import { + randomBytes, + createCipheriv, + createDecipheriv, + pbkdf2Sync, +} from 'crypto' + +// Provided for key-based encryption. Don't use encrypt and decrypt for passwords! +const encrypt = (text, algorithm, secret) => { + const iv = randomBytes(16) + const secret32 = Buffer.concat([Buffer.from(secret), Buffer.alloc(32)], 32) + const cipher = createCipheriv(algorithm, secret32, iv) + let crypted = cipher.update(text) + crypted = Buffer.concat([crypted, cipher.final()]) + return iv.toString('hex') + ':' + crypted.toString('hex') +} + +const decrypt = (text, algorithm, secret) => { + const splitText = text.split(':') + const iv = Buffer.from(splitText.shift(), 'hex') + const encryptedText = Buffer.from(splitText.join(':'), 'hex') + const secret32 = Buffer.concat([Buffer.from(secret), Buffer.alloc(32)], 32) + const decipher = createDecipheriv(algorithm, secret32, iv) + let decrypted = decipher.update(encryptedText) + decrypted = Buffer.concat([decrypted, decipher.final()]) + return decrypted.toString() +} + +// Use these for passwords. +const hash = (text) => { + const salt = randomBytes(16).toString('hex') + const hash = pbkdf2Sync(text, salt, 2048, 32, 'sha512').toString('hex') + return [salt, hash].join('$') +} + +const verifyHash = (text, original) => { + const originalHash = original.split('$')[1] + const salt = original.split('$')[0] + const hash = pbkdf2Sync(text, salt, 2048, 32, 'sha512').toString('hex') + return hash === originalHash +} + +export { encrypt, decrypt, hash, verifyHash } diff --git a/server/utils/dateConverter.js b/server/utils/dateConverter.js new file mode 100644 index 00000000..29af3feb --- /dev/null +++ b/server/utils/dateConverter.js @@ -0,0 +1,20 @@ +const stringToDate = (_date, _format, _delimiter) => { + const formatLowerCase = _format.toLowerCase() + const formatItems = formatLowerCase.split(_delimiter) + const dateItems = _date.split(_delimiter) + const monthIndex = formatItems.indexOf('mm') + const dayIndex = formatItems.indexOf('dd') + const yearIndex = formatItems.indexOf('yyyy') + let month = parseInt(dateItems[monthIndex], 10) + const year = + dateItems[yearIndex].length === 2 + ? '20' + dateItems[yearIndex] + : dateItems[yearIndex] + return new Date(year, --month, dateItems[dayIndex]) +} +const diffDates = (date1, date2) => { + const millisecondsPerDay = 24 * 60 * 60 * 1000 + return Math.round((date2 - date1) / millisecondsPerDay) +} + +export { diffDates, stringToDate } diff --git a/server/utils/defaultTargetValueMap.js b/server/utils/defaultTargetValueMap.js new file mode 100644 index 00000000..a7d03e15 --- /dev/null +++ b/server/utils/defaultTargetValueMap.js @@ -0,0 +1,8 @@ +const DISALLOWED_STUDIES = ['combined', 'files'] +const allowedStudies = (study) => !DISALLOWED_STUDIES.includes(study) + +export const defaultTargetValueMap = (studyList) => + studyList.filter(allowedStudies).reduce((targets, study) => { + targets[study] = '' + return targets + }, {}) diff --git a/server/utils/inputHandlers.js b/server/utils/inputHandlers.js new file mode 100644 index 00000000..9d87599e --- /dev/null +++ b/server/utils/inputHandlers.js @@ -0,0 +1,4 @@ +export const handleNumberStringInput = (input) => { + const regex = new RegExp(/^[0-9]+$/) + return regex.test(input) ? parseFloat(input) : input +} diff --git a/server/utils/invertColor.js b/server/utils/invertColor.js new file mode 100644 index 00000000..c94b00c4 --- /dev/null +++ b/server/utils/invertColor.js @@ -0,0 +1,28 @@ +/* http://stackoverflow.com/a/35970186 */ +const padZero = (str, len) => { + len = len || 2 + const zeros = new Array(len).join('0') + + return (zeros + str).slice(-len) +} +const getColor = (hex, bw) => { + if (hex.indexOf('#') === 0) { + hex = hex.slice(1) + } + + let r = parseInt(hex.slice(0, 2), 16) + let g = parseInt(hex.slice(2, 4), 16) + let b = parseInt(hex.slice(4, 6), 16) + + if (bw) { + return r * 0.299 + g * 0.587 + b * 0.114 > 186 ? '#000000' : '#FFFFFF' + } + + r = (255 - r).toString(16) + g = (255 - g).toString(16) + b = (255 - b).toString(16) + + return '#' + padZero(r) + padZero(g) + padZero(b) +} + +export { getColor } diff --git a/server/utils/mongoCollections.js b/server/utils/mongoCollections.js new file mode 100644 index 00000000..ba4d42a4 --- /dev/null +++ b/server/utils/mongoCollections.js @@ -0,0 +1,10 @@ +export const collections = { + charts: 'charts', + configs: 'configs', + metadata: 'metadata', + toc: 'toc', + users: 'users', + assessmentDayData: 'assessmentDayData', + assessments: 'assessments', + assessmentVariables: 'assessmentVariables', +} diff --git a/server/utils/passport/ensure-admin.js b/server/utils/passport/ensure-admin.js new file mode 100644 index 00000000..b3ea432f --- /dev/null +++ b/server/utils/passport/ensure-admin.js @@ -0,0 +1,18 @@ +import UserModel from '../../models/UserModel' + +export default async function ensureAdmin(req, res, next) { + try { + if (!req.isAuthenticated()) + return res.status(401).json({ error: 'Please login' }) + + const { appDb } = req.app.locals + req.user = await UserModel.findOne(appDb, { uid: req.user.uid }) + + if (req.user.role !== 'admin') + return res.status(401).json({ error: 'Incorrect access level.' }) + + return next() + } catch (error) { + return res.status(401).json({ error: error.message }) + } +} diff --git a/server/utils/passport/ensure-api-authenticated.js b/server/utils/passport/ensure-api-authenticated.js new file mode 100644 index 00000000..650900bd --- /dev/null +++ b/server/utils/passport/ensure-api-authenticated.js @@ -0,0 +1,36 @@ +import { timingSafeEqual } from 'crypto' + +export function ensureApiAuthenticated(req, res, next) { + const apiUsers = process.env.IMPORT_API_USERS.split(',') + const apiKeys = process.env.IMPORT_API_KEYS.split(',') + + const userHeader = req.headers['x-api-user'] + const keyHeader = req.headers['x-api-key'] + + if (!userHeader || !keyHeader) { + return res.status(401).send({ error: 'Unauthorized' }) + } + + let isAuthenticated = false + apiUsers.forEach((apiUser, index) => { + const apiUserBuffer = Buffer.from(apiUser, 'utf8') + const userHeaderBuffer = Buffer.from(userHeader, 'utf8') + if (apiUserBuffer.length === userHeaderBuffer.length) { + if (timingSafeEqual(apiUserBuffer, userHeaderBuffer)) { + const apiKeyBuffer = Buffer.from(apiKeys[index], 'utf8') + const keyHeaderBuffer = Buffer.from(keyHeader, 'utf8') + if (apiKeyBuffer.length === keyHeaderBuffer.length) { + if (timingSafeEqual(apiKeyBuffer, keyHeaderBuffer)) { + isAuthenticated = true + } + } + } + } + }) + + if (!isAuthenticated) { + return res.status(401).send({ error: 'Unauthorized' }) + } + + return next() +} diff --git a/server/utils/passport/ensure-authenticated.js b/server/utils/passport/ensure-authenticated.js new file mode 100644 index 00000000..9d39a147 --- /dev/null +++ b/server/utils/passport/ensure-authenticated.js @@ -0,0 +1,29 @@ +import { isAccountExpired } from './helpers' +import { logout } from './logout' +import UserModel from '../../models/UserModel' + +export default async function ensureAuthenticated(req, res, next) { + if (!req.isAuthenticated()) + return res.status(401).json({ error: 'Please login' }) + + const { appDb } = req.app.locals + req.user = await UserModel.findOne(appDb, { uid: req.user.uid }) + + const { account_expires, blocked, access, role } = req.user + + switch (true) { + case isAccountExpired(account_expires, role): + logout(req, res, next) + + return res.status(401).json({ error: 'Account is expired' }) + + case !!blocked: + return res + .status(403) + .json({ error: 'Account is blocked, please contact your admin' }) + case access.length === 0: + return res.status(403).json({ error: 'Forbidden.' }) + default: + return next() + } +} diff --git a/server/utils/passport/ensure-user.js b/server/utils/passport/ensure-user.js new file mode 100644 index 00000000..8e4f360e --- /dev/null +++ b/server/utils/passport/ensure-user.js @@ -0,0 +1,16 @@ +import UserModel from '../../models/UserModel' + +export default async function ensureUser(req, res, next) { + if (!req.isAuthenticated()) { + return res.status(401).json({ error: 'Unathorized' }) + } + + const { appDb } = req.app.locals + req.user = await UserModel.findOne(appDb, { uid: req.user.uid }) + + if (req.params.uid !== req.user.uid) { + return res.status(400).json({ error: 'Bad Request' }) + } else { + return next() + } +} diff --git a/server/utils/passport/ensureStudyPermission.js b/server/utils/passport/ensureStudyPermission.js new file mode 100644 index 00000000..f24bfa89 --- /dev/null +++ b/server/utils/passport/ensureStudyPermission.js @@ -0,0 +1,22 @@ +import UserModel from '../../models/UserModel' + +export default async function ensureStudyPermission(req, res, next) { + if (!req.isAuthenticated()) + return res.status(401).json({ error: 'Unauthorized' }) + + try { + const { appDb } = req.app.locals + const { study } = req.params + req.user = await UserModel.findOne(appDb, { uid: req.user.uid }) + const { blocked, access } = req.user + const isStudyInAccess = access.includes(study) + + if (!isStudyInAccess) return res.status(401).json({ error: 'Unauthorized' }) + + if (blocked) return res.status(403).json({ error: 'Forbidden' }) + + return next() + } catch (error) { + return res.status(400).json({ error: error.message }) + } +} diff --git a/server/utils/passport/helpers.js b/server/utils/passport/helpers.js new file mode 100644 index 00000000..ac11e29b --- /dev/null +++ b/server/utils/passport/helpers.js @@ -0,0 +1,13 @@ +import dayjs from 'dayjs' + +import { ADMIN_ROLE } from '../../constants' + +export const isAccountExpired = (accountExpires, role) => { + if (role === ADMIN_ROLE) return false + if (accountExpires === null) return true + + const today = dayjs() + const accountExpirationTodayjs = dayjs(accountExpires) + + return accountExpirationTodayjs.isBefore(today) +} diff --git a/server/utils/passport/helpers.test.js b/server/utils/passport/helpers.test.js new file mode 100644 index 00000000..35dd2fc0 --- /dev/null +++ b/server/utils/passport/helpers.test.js @@ -0,0 +1,21 @@ +import * as helpers from './helpers' + +describe('helpers', () => { + describe(helpers.isAccountExpired, () => { + it('returns false if user role is admin', () => { + expect(helpers.isAccountExpired(null, 'admin')).toEqual(false) + }) + + it('returns false when user is not an admin and account is current', () => { + expect(helpers.isAccountExpired('2122-08-21', 'member')).toEqual(false) + }) + + it('returns true if user role is not admin and account is expired', () => { + expect(helpers.isAccountExpired('2022-08-21', 'member')).toEqual(true) + }) + + it('returns true if user account is expired is not set', () => { + expect(helpers.isAccountExpired(null, 'member')).toEqual(true) + }) + }) +}) diff --git a/server/utils/passport/logout.js b/server/utils/passport/logout.js new file mode 100644 index 00000000..7b50c8a6 --- /dev/null +++ b/server/utils/passport/logout.js @@ -0,0 +1,11 @@ +export const logout = (req, res, next) => { + res.clearCookie('connect.sid') + + req.logout(function (err) { + if (err) return next(err) + + req.session.destroy(function (sessionError) { + if (sessionError) return next(sessionError) + }) + }) +} diff --git a/server/utils/routes.js b/server/utils/routes.js new file mode 100644 index 00000000..8fcaa28f --- /dev/null +++ b/server/utils/routes.js @@ -0,0 +1,69 @@ +const v1Root = `/api/v1` +const userRoot = `${v1Root}/users/:uid` + +export const routes = { + root: `/`, + chart: '/charts/:chart_id', + charts: '/charts', + editChart: '/charts/:chart_id/edit', + login: `/login`, + signup: `/signup`, + logout: `/logout`, +} + +export const v1Routes = { + assessments: { + index: `${v1Root}/assessments`, + }, + assessmentData: { + index: `${v1Root}/import/data/day`, + }, + auth: { + me: `${v1Root}/me`, + login: `${v1Root}/login`, + logout: `${v1Root}/logout`, + signup: `${v1Root}/signup`, + resetpw: `${v1Root}/resetpw`, + }, + chartsData: { + show: `${v1Root}/charts/:chart_id/data`, + }, + charts: { + show: `${v1Root}/charts/:chart_id`, + index: `${v1Root}/charts`, + }, + chartsDuplicate: { + index: `${v1Root}/charts/duplicate`, + }, + chartsShare: { + index: `${v1Root}/charts/:chart_id/share`, + }, + config: { + index: `${userRoot}/configs`, + show: `${userRoot}/configs/:config_id`, + }, + admin: { + users: { + show: `${v1Root}/admin/users/:uid`, + }, + studies: { + index: `${v1Root}/admin/search/studies`, + }, + }, + dashboards: { + show: `${v1Root}/dashboards/:study/:subject`, + }, + participants: { + index: `${v1Root}/participants`, + }, + siteMetadata: { + index: `${v1Root}/import/data/metadata`, + }, + userStudies: { + index: `${v1Root}/user-studies`, + }, + users: { + index: `${v1Root}/users`, + show: userRoot, + }, +} diff --git a/server/utils/siteNames.js b/server/utils/siteNames.js new file mode 100644 index 00000000..b99a7bcf --- /dev/null +++ b/server/utils/siteNames.js @@ -0,0 +1,42 @@ +export const SITE_NAMES = { + ME: 'Melbourne', + AD: 'Adelaide', + PE: 'Perth', + JE: 'Jena', + CP: 'Copenhagen', + BM: 'Birmingham', + AM: 'Amsterdam', + LS: 'Lausanne', + GW: 'Gwangju', + SG: 'Singapore', + HK: 'Hong Kong', + CG: 'Cologne', + ST: 'Santiago', + LA: 'UCLA', + OR: 'Oregon', + BI: 'BIDMC', + NL: 'Northwell', + NC: 'UNC', + SD: 'UCSD', + CA: 'Calgary', + YA: 'Yale', + SF: 'UCSF', + PA: 'Penn', + SI: 'Mt. Sinai', + PI: 'Pittsburgh', + NN: 'Northwestern', + IR: 'UC Irvine', + TE: 'Temple', + GA: 'Georgia', + WU: 'WashU', + HA: 'Hartford', + MT: 'Montreal', + KC: "King's College London", + PV: 'Pavia', + MA: 'Madrid', + CM: 'Cambridge UK', + MU: 'Munich', + SH: 'Shanghai', + SL: 'Seoul', + Totals: 'Totals', +} diff --git a/server/utils/userUpdatedSiteList.js b/server/utils/userUpdatedSiteList.js new file mode 100644 index 00000000..2a0d056a --- /dev/null +++ b/server/utils/userUpdatedSiteList.js @@ -0,0 +1,8 @@ +const DISALLOWED_STUDIES = ['combined', 'files', 'ProNet'] +const allowedStudies = (study) => !DISALLOWED_STUDIES.includes(study) + +export const recentStudyList = (studyList) => + studyList.filter(allowedStudies).reduce((targets, study) => { + targets[study] = '' + return targets + }, {}) diff --git a/singularity/Singularity b/singularity/Singularity deleted file mode 100644 index 6303b70d..00000000 --- a/singularity/Singularity +++ /dev/null @@ -1,82 +0,0 @@ -Bootstrap:docker -From:centos:7.4.1708 - -%environment -export PATH=/sw/apps/miniconda/bin:$PATH - -%labels -AUTHOR jisoolily_jeong@harvard.edu -AUTHOR timothy_okeefe@harvard.edu -AUTHOR hhoke@fas.harvard.edu - -%post -## Set data path -mkdir -p /data/dpdash - -## set web proxies if necessary -#export http_proxy="" -#export https_proxy="" -#export no_proxy="localhost" - -## update yum and install some useful things -yum -y update -yum clean all -yum -y groupinstall "Development tools" -yum -y install net-tools telnet wget git tar which whereis bzip2 p7zip vim vi vixie-cron cronie sudo - -## install the RabbitMQ message queue -wget https://github.com/rabbitmq/erlang-rpm/releases/download/v19.3.6.13/erlang-19.3.6.13-1.el7.centos.x86_64.rpm -yum -y install erlang-19.3.6.13-1.el7.centos.x86_64.rpm -wget http://www.rabbitmq.com/releases/rabbitmq-server/v3.6.9/rabbitmq-server-3.6.9-1.el6.noarch.rpm -rpm --import https://www.rabbitmq.com/rabbitmq-signing-key-public.asc -yum -y install rabbitmq-server-3.6.9-1.el6.noarch.rpm - -## install the Miniconda Python distribution -curl https://repo.continuum.io/miniconda/Miniconda2-4.3.21-Linux-x86_64.sh -o /tmp/conda.sh -bash /tmp/conda.sh -p /sw/apps/miniconda -b && rm /tmp/conda.sh -export PATH=/sw/apps/miniconda/bin:$PATH - -## install the Node.js run-time -curl --silent --location https://rpm.nodesource.com/setup_9.x | bash - -yum -y install nodejs - -# set npm proxy if necessary -#npm config set proxy "" -#npm config set https-proxy "" - -## set npm version -npm cache clean -f -npm install -g n -n 9.11.2 - -## install the MongoDB document database -mkdir -p /etc/yum.repos.d -cat >> /etc/yum.repos.d/mongodb-org-3.4.repo <<- 'EOF' -[mongodb-org-3.4] -name=MongoDB Repository -baseurl=https://repo.mongodb.org/yum/redhat/$releasever/mongodb-org/3.4/x86_64/ -gpgcheck=1 -enabled=1 -gpgkey=https://www.mongodb.org/static/pgp/server-3.4.asc -EOF -yum install -y mongodb-org - -## install the Celery asyncronous task queue -pip install celery - -## install the DPdash digital phenotyping dashboard -mkdir -p /sw/apps/dpdash && cd /sw/apps/dpdash -git clone https://ncfcode.rc.fas.harvard.edu/dpdash/dpdash.git . -rm -rf ./node_modules -npm install --save . -npm run build -rm -rf ./.git - -## install the DPPY DPdash file scanner/importer -mkdir -p /sw/apps/dppy && cd /sw/apps/dppy -git clone https://ncfcode.rc.fas.harvard.edu/dpdash/dppy.git . -pip install -r requirements.txt -rm -rf ./.git - -## install Supervisord process control system -easy_install supervisor diff --git a/singularity/configs/config.schema b/singularity/configs/config.schema deleted file mode 100755 index 62135e1e..00000000 --- a/singularity/configs/config.schema +++ /dev/null @@ -1,45 +0,0 @@ -{ - "$schema": "http://json-schema.org/draft-04/schema#", - "title": "Configuration", - "description": "DPdash configuration file", - "type": "array", - "items": { - "title": "row", - "description": "Configuration file row", - "type": "object", - "properties": { - "data_type": { - "description": "Data type name", - "type": "string", - "pattern": "^[a-zA-Z]+$" - }, - "assessment": { - "description": "Assessment name", - "type": "string", - "pattern": "^[a-zA-Z_]+$" - }, - "variable": { - "description": "Variable description", - "type": "string", - "pattern": "^[a-zA-Z_]+$" - }, - "alias": { - "description": "Alias", - "type": "string" - }, - "range": { - "description": "Tick marks", - "type": "array", - "uniqueItems": true, - "items": { - "type": "number" - } - }, - "colorbar": { - "description": "Color bar", - "enum": ["YlGn", "RdYlBu", "RdBu"] - } - }, - "required": ["data_type", "assessment", "variable", "alias", "range"] - } -} diff --git a/singularity/configs/defaultStudyConfig.js b/singularity/configs/defaultStudyConfig.js deleted file mode 100644 index cf1f44a1..00000000 --- a/singularity/configs/defaultStudyConfig.js +++ /dev/null @@ -1,76 +0,0 @@ -var configs = {}; -configs.colormap = [ - { - category : "daily_survey", - analysis : "timestamp", - variable : "daily_surveyAnswers_hours_since_1", - label : "daily_survey", - range : [0, 24], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text: true - }, - { - category : "daily_survey", - analysis : "questionnaireStat", - variable : "DAILY_1_NUM_UNANSWERED", - label : "unanswered_num", - range : [0, 10], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text: true - }, - { - category : "voice", - analysis : "timestamp", - variable : "daily_voiceRecording_hours_since_1", - label : "daily_voice", - range : [0, 24], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text: true - }, - { - category : "weekly_survey", - analysis : "timestamp", - variable : "weekly_surveyAnswers_hours_since_1", - label : "weekly_survey", - range : [0, 24], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text: true - }, - { - category : "weekly_survey", - analysis : "questionnaireStat", - variable : "WEEKLY_1_NUM_UNANSWERED", - label : "unanswered_num", - range : [0, 10], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text: true - }, - { - category : "actigraphy", - analysis : "Geneactivwrist", - variable : "button", - label : "button", - range : [10, 50], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text: true - }, - { - category : "balancesheet", - analysis : "balancesheetGps", - variable : "gps_count", - label : "gps_file_count", - range : [0, 24], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text : true - }, - { - category : "balancesheet", - analysis : "balancesheetAccel", - variable : "accel_count", - label : "accel_file_count", - range : [0, 24], - color : ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"], - text : true - } - ]; -module.exports = configs; diff --git a/singularity/configs/defaultUserConfig.js b/singularity/configs/defaultUserConfig.js deleted file mode 100644 index ee65b447..00000000 --- a/singularity/configs/defaultUserConfig.js +++ /dev/null @@ -1,1949 +0,0 @@ -var userConfig = {}; -userConfig.colormap =[ - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_00_filesize", - label : "callLog_00HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_01_filesize", - label : "callLog_01HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_02_filesize", - label : "callLog_02HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_03_filesize", - label : "callLog_03HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_04_filesize", - label : "callLog_04HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_05_filesize", - label : "callLog_05HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_06_filesize", - label : "callLog_06HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_07_filesize", - label : "callLog_07HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_08_filesize", - label : "callLog_08HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_09_filesize", - label : "callLog_09HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_10_filesize", - label : "callLog_10HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_11_filesize", - label : "callLog_11HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_12_filesize", - label : "callLog_12HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_13_filesize", - label : "callLog_13HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_14_filesize", - label : "callLog_14HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_15_filesize", - label : "callLog_15HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_16_filesize", - label : "callLog_16HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_17_filesize", - label : "callLog_17HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_18_filesize", - label : "callLog_18HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_19_filesize", - label : "callLog_19HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_20_filesize", - label : "callLog_20HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_21_filesize", - label : "callLog_21HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_22_filesize", - label : "callLog_22HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "callLog", - analysis : "balancesheetCalllog", - variable : "callLog_hour_23_filesize", - label : "callLog_23HR", - range : [165, 565], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_00_filesize", - label : "textsLog_00HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_01_filesize", - label : "textsLog_01HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_02_filesize", - label : "textsLog_02HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_03_filesize", - label : "textsLog_03HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_04_filesize", - label : "textsLog_04HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_05_filesize", - label : "textsLog_05HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_06_filesize", - label : "textsLog_06HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_07_filesize", - label : "textsLog_07HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_08_filesize", - label : "textsLog_08HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_09_filesize", - label : "textsLog_09HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_10_filesize", - label : "textsLog_10HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_11_filesize", - label : "textsLog_11HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_12_filesize", - label : "textsLog_12HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_13_filesize", - label : "textsLog_13HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_14_filesize", - label : "textsLog_14HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_15_filesize", - label : "textsLog_15HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_16_filesize", - label : "textsLog_16HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_17_filesize", - label : "textsLog_17HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_18_filesize", - label : "textsLog_18HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_19_filesize", - label : "textsLog_19HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_20_filesize", - label : "textsLog_20HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_21_filesize", - label : "textsLog_21HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "textsLog", - analysis : "balancesheetTextslog", - variable : "textsLog_hour_22_filesize", - label : "textsLog_22HR", - range : [174, 2524], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - 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label : "powerState_00HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_01_filesize", - label : "powerState_01HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_02_filesize", - label : "powerState_02HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_03_filesize", - label : "powerState_03HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - 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label : "powerState_07HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_08_filesize", - label : "powerState_08HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_09_filesize", - label : "powerState_09HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_10_filesize", - label : "powerState_10HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_11_filesize", - label : "powerState_11HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_12_filesize", - label : "powerState_12HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_13_filesize", - label : "powerState_13HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_14_filesize", - label : "powerState_14HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_15_filesize", - label : "powerState_15HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_16_filesize", - label : "powerState_16HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_17_filesize", - label : "powerState_17HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_18_filesize", - label : "powerState_18HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_19_filesize", - label : "powerState_19HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_20_filesize", - label : "powerState_20HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_21_filesize", - label : "powerState_21HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_22_filesize", - label : "powerState_22HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "powerState", - analysis : "balancesheetPowerstate", - variable : "powerState_hour_23_filesize", - label : "powerState_23HR", - range : [77, 2680], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_00_filesize", - label : "gps_00HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_01_filesize", - label : "gps_01HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_02_filesize", - label : "gps_02HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_03_filesize", - label : "gps_03HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_04_filesize", - label : "gps_04HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_05_filesize", - label : "gps_05HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_06_filesize", - label : "gps_06HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_07_filesize", - label : "gps_07HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_08_filesize", - label : "gps_08HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_09_filesize", - label : "gps_09HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_10_filesize", - label : "gps_10HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_11_filesize", - label : "gps_11HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_12_filesize", - label : "gps_12HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_13_filesize", - label : "gps_13HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_14_filesize", - label : "gps_14HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_15_filesize", - label : "gps_15HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_16_filesize", - label : "gps_16HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_17_filesize", - label : "gps_17HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_18_filesize", - label : "gps_18HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_19_filesize", - label : "gps_19HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_20_filesize", - label : "gps_20HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_21_filesize", - label : "gps_21HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_22_filesize", - label : "gps_22HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "gps", - analysis : "balancesheetGps", - variable : "gps_hour_23_filesize", - label : "gps_23HR", - range : [37500, 60000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_00_filesize", - label : "accel_00HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_01_filesize", - label : "accel_01HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_02_filesize", - label : "accel_02HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_03_filesize", - label : "accel_03HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_04_filesize", - label : "accel_04HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_05_filesize", - label : "accel_05HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_06_filesize", - label : "accel_06HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_07_filesize", - label : "accel_07HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_08_filesize", - label : "accel_08HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_09_filesize", - label : "accel_09HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_10_filesize", - label : "accel_10HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_11_filesize", - label : "accel_11HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_12_filesize", - label : "accel_12HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_13_filesize", - label : "accel_13HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_14_filesize", - label : "accel_14HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_15_filesize", - label : "accel_15HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_16_filesize", - label : "accel_16HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_17_filesize", - label : "accel_17HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_18_filesize", - label : "accel_18HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_19_filesize", - label : "accel_19HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_20_filesize", - label : "accel_20HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_21_filesize", - label : "accel_21HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_22_filesize", - label : "accel_22HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "accel", - analysis : "balancesheetAccel", - variable : "accel_hour_23_filesize", - label : "accel_23HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_00_filesize", - label : "wifiLog_00HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_01_filesize", - label : "wifiLog_01HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_02_filesize", - label : "wifiLog_02HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_03_filesize", - label : "wifiLog_03HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_04_filesize", - label : "wifiLog_04HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_05_filesize", - label : "wifiLog_05HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_06_filesize", - label : "wifiLog_06HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_07_filesize", - label : "wifiLog_07HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_08_filesize", - label : "wifiLog_08HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_09_filesize", - label : "wifiLog_09HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_10_filesize", - label : "wifiLog_10HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_11_filesize", - label : "wifiLog_11HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_12_filesize", - label : "wifiLog_12HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_13_filesize", - label : "wifiLog_13HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_14_filesize", - label : "wifiLog_14HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_15_filesize", - label : "wifiLog_15HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_16_filesize", - label : "wifiLog_16HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_17_filesize", - label : "wifiLog_17HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_18_filesize", - label : "wifiLog_18HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_19_filesize", - label : "wifiLog_19HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_20_filesize", - label : "wifiLog_20HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_21_filesize", - label : "wifiLog_21HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_22_filesize", - label : "wifiLog_22HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "wifiLog", - analysis : "balancesheetWifilog", - variable : "wifiLog_hour_23_filesize", - label : "wifiLog_23HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_00_filesize", - label : "bluetoothLog_00HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_01_filesize", - label : "bluetoothLog_01HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_02_filesize", - label : "bluetoothLog_02HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_03_filesize", - label : "bluetoothLog_03HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_04_filesize", - label : "bluetoothLog_04HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_05_filesize", - label : "bluetoothLog_05HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_06_filesize", - label : "bluetoothLog_06HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_07_filesize", - label : "bluetoothLog_07HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_08_filesize", - label : "bluetoothLog_08HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_09_filesize", - label : "bluetoothLog_09HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_10_filesize", - label : "bluetoothLog_10HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_11_filesize", - label : "bluetoothLog_11HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_12_filesize", - label : "bluetoothLog_12HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_13_filesize", - label : "bluetoothLog_13HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_14_filesize", - label : "bluetoothLog_14HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_15_filesize", - label : "bluetoothLog_15HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_16_filesize", - label : "bluetoothLog_16HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_17_filesize", - label : "bluetoothLog_17HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_18_filesize", - label : "bluetoothLog_18HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_19_filesize", - label : "bluetoothLog_19HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_20_filesize", - label : "bluetoothLog_20HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_21_filesize", - label : "bluetoothLog_21HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_22_filesize", - label : "bluetoothLog_22HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - }, - { - category : "bluetoothLog", - analysis : "balancesheetBluetoothlog", - variable : "bluetoothLog_hour_23_filesize", - label : "bluetoothLog_23HR", - range : [1711938, 2000000], - color : ["#4575b4", "#74add1", "#abd9e9", "#e0f3f8", "#ffffbf", "#fee090", "#fdae61", "#f46d43", "#d73027"], - text : false - } -]; -module.exports = userConfig; - diff --git a/singularity/configure.py b/singularity/configure.py deleted file mode 100755 index 083be34b..00000000 --- a/singularity/configure.py +++ /dev/null @@ -1,229 +0,0 @@ -#!/usr/b n/env python - -import argparse as ap -import os -import logging - -logger = logging.getLogger(os.path.basename(__file__)) -logging.basicConfig(level=logging.INFO, format='%(asctime)s - %(levelname)s - %(message)s') - -def main(): - parser = ap.ArgumentParser('DPdash Configuration') - - parser.add_argument('--data-dir', help='Path to the root directory for GENERAL and PROTECTED folders') - parser.add_argument('--config-dir', help='Path to the directory for all configuration files') - parser.add_argument('--mongo-pw', help='MongoDB password for username dpdash') - parser.add_argument('--rabbit-username', help='RabbitMQ username') - parser.add_argument('--rabbit-pw', help='RabbitMQ password') - parser.add_argument('--ssl-ca', help='Path to the ssl CA in PEM') - parser.add_argument('--ssl-client-cert', help='Path to the client ssl certificate') - parser.add_argument('--ssl-client-key', help='Path to the client ssl key') - parser.add_argument('--ssl-server-cert', help='Path to the server ssl certificate') - parser.add_argument('--ssl-server-key', help='Path to the server ssl key') - parser.add_argument('--mongo-server-cert', help='Path to the MongoDB certificate') - parser.add_argument('--mongo-path', help='Path to the MongoDB bind path') - parser.add_argument('--celery-path', help='Path to the Celery bind path') - parser.add_argument('--dpdash-path', help='Path to the DPdash bind path') - - parser.add_argument('--rabbit-host', help='Rabbitmq host address') - parser.add_argument('--mongo-host', help='MongoDB host address') - parser.add_argument('--rabbit-port', help='Rabbitmq port number', default=5671) - parser.add_argument('--mongo-port', help='MongoDB port number', default=27017) - parser.add_argument('--dpdash-port', help='DPdash port number', default=8000) - - parser.add_argument('--dpdash-secret', help='DPdash session secret') - parser.add_argument('--app-secret', help='App secret') - - args = parser.parse_args() - - configure_rabbit(args.rabbit_port, args.ssl_ca, args.ssl_server_cert, args.ssl_server_key, args.config_dir) - configure_mongo(args.mongo_port, args.mongo_path, args.ssl_ca, args.mongo_server_cert, args.config_dir) - configure_dppy(args.rabbit_port, args.celery_path, args.ssl_client_key, args.ssl_client_cert, args.ssl_ca, args.config_dir, args.rabbit_pw, args.rabbit_host) - configure_dpdash(args.ssl_ca, args.ssl_client_key, args.ssl_client_cert, args.dpdash_port, args.mongo_port, args.rabbit_port, args.mongo_pw, args.rabbit_pw, args.dpdash_secret, args.config_dir, args.data_dir, args.dpdash_path, args.rabbit_host, args.mongo_host, args.app_secret) - -def export_file(file_path, content): - try: - with open(file_path, 'w') as writeable: - logger.info('Writing {FILE}'.format(FILE=file_path)) - writeable.write(content) - except Exception as e: - logger.error(e) - - return - -def configure_rabbit(rabbit_port, ca_path, cert_path, key_path, config_path): - configuration = '''[ - {ssl, [{versions, ['tlsv1.2', 'tlsv1.1']}]}, - {rabbit, [ - {ssl_listeners, [%(rabbit_port)s]}, - {ssl_options, [{cacertfile, "%(ca_path)s"}, - {certfile, "%(cert_path)s"}, - {keyfile, "%(key_path)s"}, - {versions, ['tlsv1.2','tlsv1.1']}, - {verify, verify_peer}, - {fail_if_no_peer_cert, true}]} - ]} -].''' % { 'rabbit_port' : rabbit_port, 'ca_path' : ca_path, 'cert_path' : cert_path, 'key_path' : key_path } - - return export_file(os.path.join(config_path,'rabbitmq.config'), configuration) - -def configure_mongo(mongo_port, mongo_path, ca_path, mongocert_path, config_path): - configuration = '''auth = true -fork = false -port = %(mongo_port)s -dbpath = %(mongo_path)s/dbs/ -logappend = true -logpath = %(mongo_path)s/logs/mongodb.log -sslMode = requireSSL -sslPEMKeyFile = %(mongocert_path)s -sslCAFile = %(ca_path)s''' % { 'mongo_port' : mongo_port, 'mongo_path' : mongo_path, 'mongocert_path' : mongocert_path, 'ca_path' : ca_path } - - return export_file(os.path.join(config_path, 'mongodb.conf'), configuration) - -def configure_dppy(rabbit_port, celery_path, key_path, cert_path, ca_path, config_path, rabbit_pw, rabbit_host): - configuration = '''{ - "celery" : { - "queue" : "dpdash", - "broker" : "amqp://dpdash:%(rabbit_pw)s@%(rabbit_host)s:%(rabbit_port)s//", - "backend" : "amqp://dpdash:%(rabbit_pw)s@%(rabbit_host)s:%(rabbit_port)s//", - "CELERY_RESULT_BACKEND" : "rpc", - "CELERY_RESULT_PERSISTENT" : true, - "CELERY_TASK_SERIALIZER" : "json", - "CELERY_RESULT_SERIALIZER" : "json", - "CELERY_IGNORE_RESULT" : false, - "CELERY_ACCEPT_CONTENT" : ["json"], - "CELERYD_STATE_DB" : "%(celery_path)s", - "BROKER_USE_SSL" : { - "keyfile": "%(key_path)s", - "certfile" : "%(cert_path)s", - "ca_certs" : "%(ca_path)s" - }, - "BROKER_TRANSPORT_OPTIONS" : { - "confirm_publish" : true - } - }, - "mongodb" : { - "ssl" : { - "ssl_certfile" : "%(cert_path)s", - "ssl_keyfile" : "%(key_path)s", - "ca_certs" : "%(ca_path)s" - } - } -}''' % { - 'rabbit_host' : rabbit_host, - 'rabbit_port' : rabbit_port, - 'celery_path' : celery_path, - 'key_path': key_path, - 'cert_path' : cert_path, - 'ca_path' : ca_path, - 'rabbit_pw':rabbit_pw - } - - return export_file(os.path.join(config_path, 'dppy.conf'), configuration) - -def configure_dpdash(ca_path, key_path, cert_path, dpdash_port, mongo_port, rabbit_port, mongo_password, rabbit_password, session_secret, config_path, data_repo, dpdash_path, rabbit_host, mongo_host, secret): - configuration = '''var fs = require("fs"); -var cert = fs.readFileSync("%(cert_path)s"); -var key = fs.readFileSync("%(key_path)s"); -var ca = [fs.readFileSync("%(ca_path)s")]; - -var config = {}; - -config.app = {}; -config.app.debug = false; -config.app.address = "0.0.0.0"; -config.app.port = %(dpdash_port)s; -config.app.logfile = "%(dpdash_log)s"; -config.app.archive = "data"; -config.app.secret = "%(secret)s"; -config.app.sslKey = "%(key_path)s"; -config.app.sslCertificate = "%(cert_path)s"; -config.app.realms = [ "" ]; -config.app.rootDir = "%(data_repo)s"; - -config.database = {}; -config.database.mongo = {}; -config.database.mongo.host = "%(mongo_host)s"; -config.database.mongo.port = %(mongo_port)s; -config.database.mongo.appDB = "dpdmongo"; -config.database.mongo.dataDB = "dpdata"; -config.database.mongo.authSource = "admin"; -config.database.mongo.username = "dpdash"; -config.database.mongo.password = "%(mongo_password)s"; - -config.database.mongo.server = {}; -config.database.mongo.server.ssl = true; -config.database.mongo.server.sslCA = ca; -config.database.mongo.server.sslCert = cert; -config.database.mongo.server.sslKey = key; -config.database.mongo.server.sslValidate = false; -config.database.mongo.server.reconnectTries = 1; -config.database.mongo.server.useNewUrlParser = true; - -config.database.acl = {}; -config.database.acl.json = "%(acl_path)s"; - -config.rabbitmq = {}; - -config.rabbitmq.host = "%(rabbit_host)s"; -config.rabbitmq.port = "%(rabbit_port)s"; -config.rabbitmq.vhost = "/"; -config.rabbitmq.username = "dpdash"; -config.rabbitmq.password = "%(rabbit_password)s"; -config.rabbitmq.publisherQueue = "dpdash"; -config.rabbitmq.consumerQueue = "dpdashResponse"; - -config.rabbitmq.opts = {}; -config.rabbitmq.opts.ca = ca; -config.rabbitmq.opts.cert = cert; -config.rabbitmq.opts.key = key; - -config.rabbitmq.sync = {}; -config.rabbitmq.sync.hours = [1]; - -config.session = {}; - -config.session.secret = "%(session_secret)s"; -config.session.saveUninitialized = false; -config.session.resave = true; - -config.session.cookie = {}; -config.session.cookie.secure = true; -config.session.cookie.maxAge = 24*60*60*1000; - -config.auth = {}; -config.auth.table = "users"; -config.auth.usernameField = "username"; -config.auth.passwordField = "password"; -config.auth.useLDAP = false; - -config.auth.ldap = {}; -config.auth.ldap.url = "ldap://0.0.0.0:000"; -config.auth.ldap.bindDn = "cn=,ou=,dc="; -config.auth.ldap.bindCredentials = "PASSWORD"; -config.auth.ldap.searchBase = "ou=,dc=,dc="; -config.auth.ldap.searchFilter = "(uid={{username}})"; -config.auth.ldap.searchAttributes = ["cn", "mail", "memberOf", "uid", "title", "department", "company", "telephoneNumber", "badPwdCount", "badPasswordTime", "lockoutTime", "whenCreated", "whenChanged", "lastLogoff", "lastLogon", "accountExpires"]; - -module.exports = config;''' % { - 'secret' : secret, - 'rabbit_host': rabbit_host, - 'mongo_host': mongo_host, - 'rabbit_port' : rabbit_port, - 'mongo_port' : mongo_port, - 'dpdash_port' : dpdash_port, - 'key_path' : key_path, - 'cert_path' : cert_path, - 'ca_path' : ca_path, - 'mongo_password' : mongo_password, - 'rabbit_password' : rabbit_password, - 'session_secret' : session_secret, - 'data_repo' : data_repo, - 'acl_path': os.path.join(dpdash_path, 'acl.json'), - 'dpdash_log': os.path.join(dpdash_path, 'dpdash.log') - } - - return export_file(os.path.join(config_path, 'dpdash.js'), configuration) - -if __name__ == '__main__': - main() diff --git a/singularity/configure.sh b/singularity/configure.sh deleted file mode 100755 index bd6745ff..00000000 --- a/singularity/configure.sh +++ /dev/null @@ -1,19 +0,0 @@ -#!/bin/bash - -# strict mode so script quits immediately upon failure -set -eo pipefail - -sudo /sbin/sysctl -p /etc/sysctl.conf -sudo /sbin/sysctl -w fs.file-max=100000 -sudo /sbin/sysctl --system - -sudo bash -c "cat >> /etc/security/limits.conf <<- 'EOF' -* soft nproc 100000 -* hard nproc 100000 -* soft nofile 100000 -* hard nofile 100000 -root soft nproc 100000 -root hard nproc 100000 -root soft nofile 100000 -root hard nofile 100000 -EOF" diff --git a/singularity/import.sh b/singularity/import.sh deleted file mode 100755 index 153d28b9..00000000 --- a/singularity/import.sh +++ /dev/null @@ -1,9 +0,0 @@ -#!/bin/bash - -# strict mode so script quits immediately upon failure -set -eo pipefail - -dataDir=$1 ## Directory that contains GENERAL and PROTECTED folders -containerDataDir=$2 ## Directory that contains data generated by dpdash - -singularity exec -B ${containerDataDir}:/data -B ${dataDir}:${dataDir} dpdash2.img /data/scripts/push.sh diff --git a/singularity/init.sh b/singularity/init.sh deleted file mode 100755 index d15311f5..00000000 --- a/singularity/init.sh +++ /dev/null @@ -1,98 +0,0 @@ -#!/bin/bash - -# strict mode so script quits immediately upon failure -set -eo pipefail - -dataDir=$1 ## Directory that contains GENERAL and PROTECTED folders -containerDataDir=$2 ## Directory to save data generated by dpdash -serviceHost=$3 ##Optional; all long host names (FQDNs) of rabbitmq and mongodb services. - -if [ -z "$serviceHost" ] -then - serviceHost=`hostname -f | xargs` -fi - -if [ -d "$containerDataDir" ] && [ "$(ls -A $containerDataDir)" ]; then - echo "$containerDataDir needs to both exist and be empty" - exit 1 -fi - -## Transport script files -mkdir -p ${containerDataDir}/scripts -find ./ -type f -maxdepth 1 ! -name dpdash2.img -exec cp -t ${containerDataDir}/scripts/ {} + - -## Get current working directory -DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" - -## Generate SSL certificates -echo '***************Generating SSL Certificates***************' -mkdir -p ${containerDataDir}/ssl/ca ${containerDataDir}/ssl/server ${containerDataDir}/ssl/client -mkdir -p ${containerDataDir}/ssl/ca/certs ${containerDataDir}/ssl/ca/private -chmod 700 ${containerDataDir}/ssl/ca/private -cp ./openssl.cnf ${containerDataDir}/ssl/ca/openssl.cnf -cd ${containerDataDir}/ssl/ca -echo 01 > serial -touch index.txt - -echo 'Generating CAs' -cd ${containerDataDir}/ssl/ca -openssl req -x509 -config openssl.cnf -newkey rsa:4096 -days 365 \ - -out cacert.pem -outform PEM -subj /CN=DPdashCA/ -nodes -openssl x509 -in cacert.pem -out cacert.cer -outform DER - -echo 'Generating server keys' -cd ../server -openssl genrsa -out key.pem 4096 -openssl req -new -key key.pem -out req.pem -outform PEM \ - -subj "/CN=${serviceHost}/O=server/" -nodes - -cd ../ca -openssl ca -config openssl.cnf -in ../server/req.pem -out \ - ../server/cert.pem -notext -batch -extensions server_ca_extensions - -echo 'Generating client keys' -cd ../client -openssl genrsa -out key.pem 4096 -openssl req -new -key key.pem -out req.pem -outform PEM \ - -subj "/CN=${serviceHost}/O=client/" -nodes - -cd ../ca -openssl ca -config openssl.cnf -in ../client/req.pem -out \ - ../client/cert.pem -notext -batch -extensions client_ca_extensions - -echo 'Generating Mongodb keys' -cat ${containerDataDir}/ssl/server/key.pem ${containerDataDir}/ssl/server/cert.pem > ${containerDataDir}/ssl/mongo_server.pem -cat ${containerDataDir}/ssl/client/key.pem ${containerDataDir}/ssl/client/cert.pem > ${containerDataDir}/ssl/mongo_client.pem - -## Generate Configurations -echo '***************Generating Configs***************' -cd ${containerDataDir}/scripts -mkdir -p ${containerDataDir}/dpdash/configs -export mongopw=`openssl rand -base64 32 | tr -d "+=/"` -export rabbitpw=`openssl rand -base64 32| tr -d "+=/"` -export dpdashsecret=`openssl rand -base64 32` -export appsecret=`openssl rand -base64 32 | tr -d "+=/"` -python ./configure.py --data-dir ${dataDir} --config-dir ${containerDataDir}/dpdash/configs --mongo-pw $mongopw --rabbit-pw $rabbitpw --ssl-ca /data/ssl/ca/cacert.pem --ssl-server-cert /data/ssl/server/cert.pem --ssl-server-key /data/ssl/server/key.pem --ssl-client-cert /data/ssl/client/cert.pem --ssl-client-key /data/ssl/client/key.pem --mongo-server-cert /data/ssl/mongo_server.pem --mongo-path /data/dpdash/mongodb --celery-path /data/dpdash/celery/ --dpdash-secret $dpdashsecret --mongo-host ${serviceHost} --rabbit-host ${serviceHost} --dpdash-path /data/dpdash/ --app-secret $appsecret - -## Initializing supervisord Space -echo '***************Initializing supervisord logdir***************' -mkdir -p ${containerDataDir}/dpdash/supervisord/logs - -## Initializing MongoDB Space -echo '***************Initializing MONGOB Space***************' -mkdir -p ${containerDataDir}/dpdash/mongodb/logs && mkdir ${containerDataDir}/dpdash/mongodb/dbs - -## Initializing Rabbitmq Space -echo '***************Initializing RABBITMQ Space***************' -mkdir -p ${containerDataDir}/dpdash/rabbitmq && mkdir ${containerDataDir}/dpdash/celery - -## Initializing DPdash Upload Space -echo '***************Initializing DPdash Space*****************' -mkdir -p ${containerDataDir}/dpdash/uploads && mkdir -p ${containerDataDir}/dpdash/configs/dashboard -cd ${DIR} -cp -R ./configs/* ${containerDataDir}/dpdash/configs/dashboard/ -cp supervisord.conf ${containerDataDir}/dpdash/configs/ - -## Set-up the container -echo '***************Setting up DPdash*****************' -singularity exec -B ${containerDataDir}:/data dpdash2.img /data/scripts/setup.sh $mongopw $rabbitpw $appsecret diff --git a/singularity/openssl.cnf b/singularity/openssl.cnf deleted file mode 100644 index b246302a..00000000 --- a/singularity/openssl.cnf +++ /dev/null @@ -1,54 +0,0 @@ -[ ca ] -default_ca = dpdashca - -[ dpdashca ] -dir = . -certificate = $dir/cacert.pem -database = $dir/index.txt -new_certs_dir = $dir/certs -private_key = $dir/private/cakey.pem -serial = $dir/serial - -default_crl_days = 7 -default_days = 365 -default_md = sha256 - -policy = dpdashca_policy -x509_extensions = certificate_extensions - -[ dpdashca_policy ] -commonName = supplied -stateOrProvinceName = optional -countryName = optional -emailAddress = optional -organizationName = optional -organizationalUnitName = optional -domainComponent = optional - -[ certificate_extensions ] -basicConstraints = CA:false - -[ req ] -default_bits = 2048 -default_keyfile = ./private/cakey.pem -default_md = sha256 -prompt = yes -distinguished_name = root_ca_distinguished_name -x509_extensions = root_ca_extensions - -[ root_ca_distinguished_name ] -commonName = hostname - -[ root_ca_extensions ] -basicConstraints = CA:true -keyUsage = keyCertSign, cRLSign - -[ client_ca_extensions ] -basicConstraints = CA:false -keyUsage = digitalSignature,keyEncipherment -extendedKeyUsage = 1.3.6.1.5.5.7.3.2 - -[ server_ca_extensions ] -basicConstraints = CA:false -keyUsage = digitalSignature,keyEncipherment -extendedKeyUsage = 1.3.6.1.5.5.7.3.1 diff --git a/singularity/push.sh b/singularity/push.sh deleted file mode 100755 index c14ce710..00000000 --- a/singularity/push.sh +++ /dev/null @@ -1,30 +0,0 @@ -#!/bin/bash - -# strict mode so script quits immediately upon failure -set -eo pipefail - -# Proxy settings -export http_proxy=${httpProxy} -export https_proxy=${httpsProxy} -export noProxy=${noProxy} - -# miniconda2 settings -export PATH=/sw/apps/miniconda/bin:$PATH - -# vars for rabbitmq-server -export RABBITMQ_CONFIG_FILE=/data/dpdash/configs/rabbitmq -export RABBITMQ_MNESIA_BASE=/data/dpdash/rabbitmq -export RABBITMQ_LOG_BASE=/data/dpdash/rabbitmq - -# vars for celery worker -export dppy_config=/data/dpdash/configs/dppy.conf - -# vars for DPdash node app -export DPDASH_CONFIG=/data/dpdash/configs/dpdash.js -export DPDASH_UPLOADS=/data/dpdash/uploads -export DPDASH_UPLOADS_CONFIG_SCHEMA=/data/dpdash/configs/dashboard/config.schema -export DPDASH_DASHBOARD_CONFIG_DEFAULT=/data/dpdash/configs/dashboard/defaultUserConfig.js -export DPDASH_DASHBOARD_CONFIG_DEFAULT_STUDY=/data/dpdash/configs/dashboard/defaultStudyConfig.js -cd /sw/apps/dpdash - -node ./utils/importer.js diff --git a/singularity/quit.sh b/singularity/quit.sh deleted file mode 100755 index fb4e78b9..00000000 --- a/singularity/quit.sh +++ /dev/null @@ -1,24 +0,0 @@ -#!/bin/bash - -# strict mode so script quits immediately upon failure -set -eo pipefail - -# stop npm -cd /sw/apps/dpdash -npm stop - -# todo: make this do a graceful exit - -# The commented line below is not working on Linux 7 -# ps auxww | grep 'pm2' | awk '{print $2}' | xargs kill -9 -pkill -f 'pm2' - -#todo: send SIGQUIT to supervisord - -# The commented line below is not working on Linux 7 -# ps auxww | grep 'supervisord' | awk '{print $2}' | xargs kill -15 -pkill -f 'supervisord' -pkill -f 'rabbitmq' -pkill -f 'erlang' -pkill -f 'celery' -pkill -f 'mongo' diff --git a/singularity/replaceCert-nginx.sh b/singularity/replaceCert-nginx.sh deleted file mode 100755 index 1b1fae61..00000000 --- a/singularity/replaceCert-nginx.sh +++ /dev/null @@ -1,9 +0,0 @@ -#!/bin/bash -## usage: sudo ./replaceCert-nginx.sh yourNewSiteName - -## Remove last line and include dpdash conf -sed -i '$ d' /etc/nginx/nginx.conf -echo ' include /etc/nginx/conf.d/*.conf;' >> /etc/nginx/nginx.conf -echo '}' >> /etc/nginx/nginx.conf - -sed -i 's:test2.neuroinfo.org:'${1}':' /etc/nginx/conf.d/dpdash.conf diff --git a/singularity/run.sh b/singularity/run.sh deleted file mode 100755 index db9ca445..00000000 --- a/singularity/run.sh +++ /dev/null @@ -1,39 +0,0 @@ -#!/bin/bash - -# strict mode so script quits immediately upon failure -set -eo pipefail - -httpProxy=$1 -httpsProxy=$2 -noProxy=$3 - -# Proxy settings -export http_proxy=${httpProxy} -export https_proxy=${httpsProxy} -export noProxy=${noProxy} - -# miniconda2 settings -export PATH=/sw/apps/miniconda/bin:$PATH - -# vars for rabbitmq-server -export RABBITMQ_CONFIG_FILE=/data/dpdash/configs/rabbitmq -export RABBITMQ_MNESIA_BASE=/data/dpdash/rabbitmq -export RABBITMQ_LOG_BASE=/data/dpdash/rabbitmq - -# vars for celery worker -export dppy_config=/data/dpdash/configs/dppy.conf - -# start mongodb, celery, and rabbit -/sw/apps/miniconda/bin/supervisord -c /data/dpdash/configs/supervisord.conf - -# sleep 100 seconds -sleep 100 - -# vars for DPdash node app -export DPDASH_CONFIG=/data/dpdash/configs/dpdash.js -export DPDASH_UPLOADS=/data/dpdash/uploads -export DPDASH_UPLOADS_CONFIG_SCHEMA=/data/dpdash/configs/dashboard/config.schema -export DPDASH_DASHBOARD_CONFIG_DEFAULT=/data/dpdash/configs/dashboard/defaultUserConfig.js -export DPDASH_DASHBOARD_CONFIG_DEFAULT_STUDY=/data/dpdash/configs/dashboard/defaultStudyConfig.js -cd /sw/apps/dpdash -npm start diff --git a/singularity/setup.sh b/singularity/setup.sh deleted file mode 100755 index 6328e907..00000000 --- a/singularity/setup.sh +++ /dev/null @@ -1,36 +0,0 @@ -#!/bin/bash - -# strict mode so script quits immediately upon failure -set -eo pipefail - -mongopw=$1 -rabbitpw=$2 -appsecret=$3 - -# Generate dpdash password -nodecmd='require("/sw/apps/dpdash/utils/crypto/hash.js")("dpdash","aes-256-ctr","encrypt","'$appsecret'")' -adminpw=`node -p $nodecmd` - -## Set up MongoDB Authentication & SSL -echo '***************Setting up MONGOB***************' -mongod --port 27017 --logpath /data/dpdash/mongodb/logs/mongod.log --dbpath /data/dpdash/mongodb/dbs --fork -mongo admin --eval "db.createUser({user: 'dpdash', pwd:'"$mongopw"', roles: [ { role: 'root', db: 'admin' } ] });" -mongo dpdmongo --eval "db.users.insertOne({uid : 'dpdash', password:'"$adminpw"', role: 'admin', ldap: false, display_name: 'dpdash'});" -mongod --shutdown --dbpath /data/dpdash/mongodb/dbs - -## Set up Rabbitmq Server -echo '***************Setting up RABBITMQ***************' -export RABBITMQ_CONFIG_FILE=/data/dpdash/configs/rabbitmq -export RABBITMQ_MNESIA_BASE=/data/dpdash/rabbitmq -export RABBITMQ_LOG_BASE=/data/dpdash/rabbitmq -/usr/lib/rabbitmq/bin/rabbitmq-server start -detached -sleep 10 && /usr/lib/rabbitmq/bin/rabbitmqctl add_user dpdash $rabbitpw -sleep 10 && /usr/lib/rabbitmq/bin/rabbitmqctl set_permissions -p / dpdash ".*" ".*" ".*" -sleep 10 && /usr/lib/rabbitmq/bin/rabbitmqctl delete_user guest -sleep 10 && /usr/lib/rabbitmq/bin/rabbitmqctl stop - -## Set up Celery Server -echo '***************Setting up CELERY***************' -export dppy_config=/data/dpdash/configs/dppy.conf - -echo '****************Set Up Complete****************' diff --git a/singularity/supervisord.conf b/singularity/supervisord.conf deleted file mode 100644 index c67c3969..00000000 --- a/singularity/supervisord.conf +++ /dev/null @@ -1,192 +0,0 @@ -; Sample supervisor config file. -; -; For more information on the config file, please see: -; http://supervisord.org/configuration.html -; -; Notes: -; - Shell expansion ("~" or "$HOME") is not supported. Environment -; variables can be expanded using this syntax: "%(ENV_HOME)s". -; - Quotes around values are not supported, except in the case of -; the environment= options as shown below. -; - Comments must have a leading space: "a=b ;comment" not "a=b;comment". -; - Command will be truncated if it looks like a config file comment, e.g. -; "command=bash -c 'foo ; bar'" will truncate to "command=bash -c 'foo ". - -[unix_http_server] -file=/tmp/supervisor.sock ; the path to the socket file -;chmod=0700 ; socket file mode (default 0700) -;chown=nobody:nogroup ; socket file uid:gid owner -;username=user ; default is no username (open server) -;password=123 ; default is no password (open server) - -;[inet_http_server] ; inet (TCP) server disabled by default -;port=127.0.0.1:9001 ; ip_address:port specifier, *:port for all iface -;username=user ; default is no username (open server) -;password=123 ; default is no password (open server) - -[supervisord] -logfile=/data/dpdash/supervisord/logs/supervisord.log ; main log file; default $CWD/supervisord.log -logfile_maxbytes=50MB ; max main logfile bytes b4 rotation; default 50MB -logfile_backups=10 ; # of main logfile backups; 0 means none, default 10 -loglevel=info ; log level; default info; others: debug,warn,trace -pidfile=/data/dpdash/supervisord/supervisord.pid ; supervisord pidfile; default supervisord.pid -nodaemon=false ; start in foreground if true; default false -minfds=1024 ; min. avail startup file descriptors; default 1024 -minprocs=200 ; min. avail process descriptors;default 200 -;umask=022 ; process file creation umask; default 022 -;user=chrism ; default is current user, required if root -;identifier=supervisor ; supervisord identifier, default is 'supervisor' -;directory=/tmp ; default is not to cd during start -;nocleanup=true ; don't clean up tempfiles at start; default false -;childlogdir=/tmp ; 'AUTO' child log dir, default $TEMP -;environment=KEY="value" ; key value pairs to add to environment -;strip_ansi=false ; strip ansi escape codes in logs; def. false - -; The rpcinterface:supervisor section must remain in the config file for -; RPC (supervisorctl/web interface) to work. Additional interfaces may be -; added by defining them in separate [rpcinterface:x] sections. - -[rpcinterface:supervisor] -supervisor.rpcinterface_factory = supervisor.rpcinterface:make_main_rpcinterface - -; The supervisorctl section configures how supervisorctl will connect to -; supervisord. configure it match the settings in either the unix_http_server -; or inet_http_server section. - -[supervisorctl] -serverurl=unix:///tmp/supervisor.sock ; use a unix:// URL for a unix socket -;serverurl=http://127.0.0.1:9001 ; use an http:// url to specify an inet socket -;username=chris ; should be same as in [*_http_server] if set -;password=123 ; should be same as in [*_http_server] if set -;prompt=mysupervisor ; cmd line prompt (default "supervisor") -;history_file=~/.sc_history ; use readline history if available - -[program:mongod] -command=mongod --config /data/dpdash/configs/mongodb.conf --logpath /data/dpdash/mongodb/logs/mongod.log ; the program (relative uses PATH, can take args) -process_name=%(program_name)s ; process_name expr (default %(program_name)s) -priority=1 ; the relative start priority (default 999) -autostart=true ; start at supervisord start (default: true) -startsecs=10 ; # of secs prog must stay up to be running (def. 1) -startretries=3 ; max # of serial start failures when starting (default 3) -autorestart=unexpected ; when to restart if exited after running (def: unexpected) -exitcodes=0,2 ; 'expected' exit codes used with autorestart (default 0,2) -stopsignal=QUIT ; signal used to kill process (default TERM) -stopwaitsecs=10 ; max num secs to wait b4 SIGKILL (default 10) -stopasgroup=false ; send stop signal to the UNIX process group (default false) -killasgroup=true ; SIGKILL the UNIX process group (def false) -redirect_stderr=true ; redirect proc stderr to stdout (default false) -stdout_logfile=/data/dpdash/supervisord/logs/mongod.out ; stdout log path, NONE for none; default AUTO -stdout_logfile_maxbytes=1MB ; max # logfile bytes b4 rotation (default 50MB) -stdout_logfile_backups=10 ; # of stdout logfile backups (0 means none, default 10) -stdout_capture_maxbytes=1MB ; number of bytes in 'capturemode' (default 0) -stdout_events_enabled=false ; emit events on stdout writes (default false) -stderr_logfile=/data/dpdash/supervisord/logs/mongod.err ; stderr log path, NONE for none; default AUTO -stderr_logfile_maxbytes=1MB ; max # logfile bytes b4 rotation (default 50MB) -stderr_logfile_backups=10 ; # of stderr logfile backups (0 means none, default 10) -stderr_capture_maxbytes=1MB ; number of bytes in 'capturemode' (default 0) -stderr_events_enabled=false ; emit events on stderr writes (default false) -serverurl=AUTO ; override serverurl computation (childutils) - -[program:rabbitMQ] -command=/usr/lib/rabbitmq/bin/rabbitmq-server ; the program (relative uses PATH, can take args) -process_name=%(program_name)s ; process_name expr (default %(program_name)s) -priority=2 ; the relative start priority (default 999) -autostart=true ; start at supervisord start (default: true) -startsecs=10 ; # of secs prog must stay up to be running (def. 1) -startretries=3 ; max # of serial start failures when starting (default 3) -autorestart=unexpected ; when to restart if exited after running (def: unexpected) -exitcodes=0,2 ; 'expected' exit codes used with autorestart (default 0,2) -stopsignal=QUIT ; signal used to kill process (default TERM) -stopwaitsecs=10 ; max num secs to wait b4 SIGKILL (default 10) -stopasgroup=false ; send stop signal to the UNIX process group (default false) -killasgroup=true ; SIGKILL the UNIX process group (def false) -redirect_stderr=true ; redirect proc stderr to stdout (default false) -stdout_logfile=/data/dpdash/supervisord/logs/rabbitmq.out ; stdout log path, NONE for none; default AUTO -stdout_logfile_maxbytes=1MB ; max # logfile bytes b4 rotation (default 50MB) -stdout_logfile_backups=10 ; # of stdout logfile backups (0 means none, default 10) -stdout_capture_maxbytes=1MB ; number of bytes in 'capturemode' (default 0) -stdout_events_enabled=false ; emit events on stdout writes (default false) -stderr_logfile=/data/dpdash/supervisord/logs/rabbitmq.err ; stderr log path, NONE for none; default AUTO -stderr_logfile_maxbytes=1MB ; max # logfile bytes b4 rotation (default 50MB) -stderr_logfile_backups=10 ; # of stderr logfile backups (0 means none, default 10) -stderr_capture_maxbytes=1MB ; number of bytes in 'capturemode' (default 0) -stderr_events_enabled=false ; emit events on stderr writes (default false) -serverurl=AUTO ; override serverurl computation (childutils) - -[program:celery] -command=celery worker -A dppy -l info -E -f /data/dpdash/celery/celery.log -Q dpdash -Ofair --pidfile /data/dpdash/celery/celeryd.pid ; the program (relative uses PATH, can take args) -process_name=%(program_name)s ; process_name expr (default %(program_name)s) -priority=3 ; the relative start priority (default 999) -directory=/sw/apps/dppy -autostart=true ; start at supervisord start (default: true) -startsecs=10 ; # of secs prog must stay up to be running (def. 1) -startretries=3 ; max # of serial start failures when starting (default 3) -autorestart=unexpected ; when to restart if exited after running (def: unexpected) -exitcodes=0,2 ; 'expected' exit codes used with autorestart (default 0,2) -stopsignal=QUIT ; signal used to kill process (default TERM) -stopwaitsecs=10 ; max num secs to wait b4 SIGKILL (default 10) -stopasgroup=false ; send stop signal to the UNIX process group (default false) -killasgroup=true ; SIGKILL the UNIX process group (def false) -redirect_stderr=true ; redirect proc stderr to stdout (default false) -stdout_logfile=/data/dpdash/supervisord/logs/celery_worker.out ; stdout log path, NONE for none; default AUTO -stdout_logfile_maxbytes=1MB ; max # logfile bytes b4 rotation (default 50MB) -stdout_logfile_backups=10 ; # of stdout logfile backups (0 means none, default 10) -stdout_capture_maxbytes=1MB ; number of bytes in 'capturemode' (default 0) -stdout_events_enabled=false ; emit events on stdout writes (default false) -stderr_logfile=/data/dpdash/supervisord/logs/celery_worker.err ; stderr log path, NONE for none; default AUTO -stderr_logfile_maxbytes=1MB ; max # logfile bytes b4 rotation (default 50MB) -stderr_logfile_backups=10 ; # of stderr logfile backups (0 means none, default 10) -stderr_capture_maxbytes=1MB ; number of bytes in 'capturemode' (default 0) -stderr_events_enabled=false ; emit events on stderr writes (default false) -serverurl=AUTO ; override serverurl computation (childutils) - -; The sample eventlistener section below shows all possible eventlistener -; subsection values. Create one or more 'real' eventlistener: sections to be -; able to handle event notifications sent by supervisord. - -;[eventlistener:theeventlistenername] -;command=/bin/eventlistener ; the program (relative uses PATH, can take args) -;process_name=%(program_name)s ; process_name expr (default %(program_name)s) -;numprocs=1 ; number of processes copies to start (def 1) -;events=EVENT ; event notif. types to subscribe to (req'd) -;buffer_size=10 ; event buffer queue size (default 10) -;directory=/tmp ; directory to cwd to before exec (def no cwd) -;umask=022 ; umask for process (default None) -;priority=-1 ; the relative start priority (default -1) -;autostart=true ; start at supervisord start (default: true) -;startsecs=1 ; # of secs prog must stay up to be running (def. 1) -;startretries=3 ; max # of serial start failures when starting (default 3) -;autorestart=unexpected ; autorestart if exited after running (def: unexpected) -;exitcodes=0,2 ; 'expected' exit codes used with autorestart (default 0,2) -;stopsignal=QUIT ; signal used to kill process (default TERM) -;stopwaitsecs=10 ; max num secs to wait b4 SIGKILL (default 10) -;stopasgroup=false ; send stop signal to the UNIX process group (default false) -;killasgroup=false ; SIGKILL the UNIX process group (def false) -;user=chrism ; setuid to this UNIX account to run the program -;redirect_stderr=false ; redirect_stderr=true is not allowed for eventlisteners -;stdout_logfile=/a/path ; stdout log path, NONE for none; default AUTO -;stdout_logfile_maxbytes=1MB ; max # logfile bytes b4 rotation (default 50MB) -;stdout_logfile_backups=10 ; # of stdout logfile backups (0 means none, default 10) -;stdout_events_enabled=false ; emit events on stdout writes (default false) -;stderr_logfile=/a/path ; stderr log path, NONE for none; default AUTO -;stderr_logfile_maxbytes=1MB ; max # logfile bytes b4 rotation (default 50MB) -;stderr_logfile_backups=10 ; # of stderr logfile backups (0 means none, default 10) -;stderr_events_enabled=false ; emit events on stderr writes (default false) -;environment=A="1",B="2" ; process environment additions -;serverurl=AUTO ; override serverurl computation (childutils) - -; The sample group section below shows all possible group values. Create one -; or more 'real' group: sections to create "heterogeneous" process groups. - -;[group:thegroupname] -;programs=progname1,progname2 ; each refers to 'x' in [program:x] definitions -;priority=999 ; the relative start priority (default 999) - -; The [include] section can just contain the "files" setting. This -; setting can list multiple files (separated by whitespace or -; newlines). It can also contain wildcards. The filenames are -; interpreted as relative to this file. Included files *cannot* -; include files themselves. - -;[include] -;files = relative/directory/*.ini diff --git a/stores/actions.js b/stores/actions.js deleted file mode 100755 index e228e820..00000000 --- a/stores/actions.js +++ /dev/null @@ -1,12 +0,0 @@ -export const CONFIGURE_DASHBOARD = 'CONFIGURE_DASHBOARD' - -export function setDashboardConfiguration(configuration) { - return { - type: CONFIGURE_DASHBOARD, - configuration - } -} - -function getDashboardConfiguration() { - -} \ No newline at end of file diff --git a/stores/reducers.js b/stores/reducers.js deleted file mode 100755 index c639e941..00000000 --- a/stores/reducers.js +++ /dev/null @@ -1,32 +0,0 @@ -import { combineReducers } from 'redux' - -import { - CONFIGURE_DASHBOARD -} from './actions' - -function subject(state = window.SUBJECT, action) { - return state -} - -function graph(state = window.GRAPH, action) { - return state -} - -function user(state = window.USER, action) { -// switch(action.type) { -// case CONFIGURE_DASHBOARD: -// return Object.assign({}, state, { -// dashboard.configuration: action.configuration -// }) -// default: -// } - return state -} - -const rootReducer = combineReducers({ - graph, - user, - subject -}) - -export default rootReducer diff --git a/stores/store.js b/stores/store.js deleted file mode 100755 index 01875039..00000000 --- a/stores/store.js +++ /dev/null @@ -1,12 +0,0 @@ -import {createStore, applyMiddleware} from 'redux' -import thunk from 'redux-thunk' -import reducer from './reducers' - -//Redux store set-up -export default function store(preloadedState) { - return createStore( - reducer, - preloadedState, - applyMiddleware(thunk) - ) -} diff --git a/template/template.html b/template/template.html new file mode 100644 index 00000000..a4237912 --- /dev/null +++ b/template/template.html @@ -0,0 +1,13 @@ + + + + + + + DPdash + + + +
+ + diff --git a/test/FormProviderFixture.jsx b/test/FormProviderFixture.jsx new file mode 100644 index 00000000..4560d885 --- /dev/null +++ b/test/FormProviderFixture.jsx @@ -0,0 +1,11 @@ +import React from 'react' + +import { FormProvider, useForm } from 'react-hook-form' + +const FormProviderFixture = ({ children }) => { + const methods = useForm() + + return {children} +} + +export default FormProviderFixture diff --git a/test/PageRenderer.jsx b/test/PageRenderer.jsx new file mode 100644 index 00000000..9ab5c0ac --- /dev/null +++ b/test/PageRenderer.jsx @@ -0,0 +1,23 @@ +import React from 'react' + +import { LocalizationProvider } from '@mui/x-date-pickers' +import { AdapterDayjs } from '@mui/x-date-pickers/AdapterDayjs' +import { render } from '@testing-library/react' +import { MemoryRouter } from 'react-router-dom' + +import { AuthContext, NotificationContext } from '../views/contexts' + +const renderPage = (PageComponent, props = {}) => + render( + + + + + + + + + + ) + +export default renderPage diff --git a/test/fixtures.js b/test/fixtures.js new file mode 100644 index 00000000..cd459080 --- /dev/null +++ b/test/fixtures.js @@ -0,0 +1,414 @@ +import { N_A } from '../server/constants' + +export const createFieldLabelValue = (overrides = {}) => ({ + value: '', + label: '', + color: '#e2860a', + targetValues: {}, + ...overrides, +}) + +let chartID = 0 + +export const createChart = (overrides = {}, fieldLabelOverrides = []) => ({ + _id: (chartID++).toString(), + assessment: '', + description: '', + fieldLabelValueMap: [ + createFieldLabelValue({ + value: 'foo', + label: 'Foo', + targetValues: { + LA: '3', + YA: '3', + MA: '3', + }, + }), + ...fieldLabelOverrides, + ], + owner: '', + title: '', + variable: '', + ...overrides, +}) + +export const createLabel = (overrides = {}) => ({ + name: 'label-name', + color: 'label-color', + ...overrides, +}) + +export const createSiteData = (overrides = {}) => ({ + name: 'Site name', + counts: { + Good: 1, + Bad: 1, + [N_A]: 0, + Total: 2, + }, + totalsForStudy: { + count: 2, + }, + percentages: { + Good: 50, + Bad: 50, + [N_A]: 0, + }, + targets: { + Good: 0, + Bad: 0, + }, + ...overrides, +}) + +export const createDb = (overrides = {}) => ({ + aggregate: jest.fn(function () { + return this + }), + collection: jest.fn(function () { + return this + }), + distinct: jest.fn(), + deleteOne: jest.fn(), + drop: jest.fn(), + insertOne: jest.fn(), + insertMany: jest.fn(), + find: jest.fn(function () { + return this + }), + findOne: jest.fn(), + findOneAndUpdate: jest.fn(), + limit: jest.fn(function () { + return this + }), + sort: jest.fn(function () { + return this + }), + toArray: jest.fn(), + updateOne: jest.fn(), + stream: jest.fn(), + ...overrides, +}) + +export const createResponse = (overrides = {}) => ({ + clearCookie: jest.fn(), + header: jest.fn(), + json: jest.fn(), + redirect: jest.fn(), + send: jest.fn(), + status: jest.fn(function () { + return this + }), + ...overrides, +}) + +export const createRequest = (overrides = {}) => ({ + headers: {}, + params: {}, + query: '', + body: {}, + app: { + locals: { + appDb: createDb(), + dataDb: createDb(), + }, + }, + logout: jest.fn(), + ...overrides, +}) + +export const createUser = (overrides = {}) => ({ + uid: 'user-uid', + display_name: 'Display Name', + icon: 'icon', + ...overrides, +}) + +export const createRequestWithUser = (overrides = {}, userOverrides = {}) => ({ + ...createRequest(overrides), + user: createUser({ ...userOverrides }), + session: { + icon: 'icon', + display_name: 'Display Name', + role: '', + destroy: jest.fn(), + }, +}) + +export const createSubject = (overrides = {}) => ({ + collection: 'collection', + study: 'study', + subject: 'subject', + ...overrides, +}) + +export const createParticipantDayData = (overrides = {}) => ({ + ...overrides, +}) + +export const createConfiguration = (overrides = {}) => ({ + _id: '1', + owner: 'owl', + config: {}, + type: 'matrix', + created: 'Mon, 12 June 2023', + readers: ['owl'], + status: 1, + ...overrides, +}) + +export const createColorbrewer = (overrides = {}) => ({ + schemeGroups: { + sequential: [ + 'BuGn', + 'BuPu', + 'GnBu', + 'OrRd', + 'PuBu', + 'PuBuGn', + 'PuRd', + 'RdPu', + 'YlGn', + 'YlGnBu', + 'YlOrBr', + 'YlOrRd', + ], + singlehue: ['Blues', 'Greens', 'Greys', 'Oranges', 'Purples', 'Reds'], + diverging: [ + 'BrBG', + 'PiYG', + 'PRGn', + 'PuOr', + 'RdBu', + 'RdGy', + 'RdYlBu', + 'RdYlGn', + 'Spectral', + ], + qualitative: [ + 'Accent', + 'Dark2', + 'Paired', + 'Pastel1', + 'Pastel2', + 'Set1', + 'Set2', + 'Set3', + ], + }, + YlGn: { + 3: ['#f7fcb9', '#addd8e', '#31a354'], + 4: ['#ffffcc', '#c2e699', '#78c679', '#238443'], + 5: ['#ffffcc', '#c2e699', '#78c679', '#31a354', '#006837'], + 6: ['#ffffcc', '#d9f0a3', '#addd8e', '#78c679', '#31a354', '#006837'], + }, + ...overrides, +}) + +export const createColorList = (overrides = []) => [ + { value: 0, label: ['#f7fcb9', '#addd8e', '#31a354'] }, + { value: 1, label: ['#ffffcc', '#c2e699', '#78c679', '#238443'] }, + { + value: 2, + label: ['#ffffcc', '#c2e699', '#78c679', '#31a354', '#006837'], + }, + { + label: ['#ffffcc', '#d9f0a3', '#addd8e', '#78c679', '#31a354', '#006837'], + value: 3, + }, + ...overrides, +] + +export const createAnalysisConfig = (overrides = {}) => ({ + label: '', + analysis: '', + color: [], + range: [], + variable: '', + category: '', + ...overrides, +}) + +export const createMatrixData = (overrides = {}) => ({ + analysis: '', + category: '', + color: [], + data: [], + label: '', + range: [], + stat: [], + variable: '', + ...overrides, +}) + +export const createAssessmentsFromConfig = (overrides = {}) => ({ + assessment: '', + collection: '', + ...overrides, +}) + +export const createMetadataParticipant = (overrides = {}) => ({ + Active: 1, + Consent: '', + participant: '', + synced: '', + study: '', + daysInStudy: 0, + ...overrides, +}) + +export const createParticipantRow = (overrides = {}) => ({ + participant: 'CA00066', + days: 1, + study: 'CA', + star: true, + complete: true, + ...overrides, +}) + +export const createParticipantList = (length = 10, overrides = {}) => + Array(length).fill(createParticipantRow(overrides)) + +export const createFilters = (overrides = {}) => ({ + chrcrit_part: [ + { name: 'HC', value: 'true' }, + { name: 'CHR', value: 'true' }, + { name: 'Missing', value: 'true' }, + ], + included_excluded: [ + { name: 'Included', value: 'true' }, + { name: 'Excluded', value: 'true' }, + { name: 'Missing', value: 'true' }, + ], + sex_at_birth: [ + { name: 'Male', value: 'true' }, + { name: 'Female', value: 'true' }, + { name: 'Missing', value: 'true' }, + ], + ...overrides, +}) + +export const createNewAssessmentDayData = (overrides = {}) => ({ + metadata: {}, + participant_assessments: [], + assessment_variables: [], + ...overrides, +}) + +export const createSiteMetadata = (overrides = {}) => ({ + metadata: {}, + participants: [], + ...overrides, +}) + +export const createAssessmentDayData = (overrides = {}) => ({ + day: 1, + assessment: '', + participant: '', + study: '', + dayData: [], + daysInStudy: overrides.dayData + ? Math.max(...overrides.dayData.map((dayData) => dayData.day)) + : 0, + ...overrides, +}) + +export const createGraphDataResponse = (overrides = {}) => ({ + subject: { + sid: 'LA48928', + project: 'LA', + }, + graph: { + matrixData: [ + { + analysis: 'phone_power_activityScores_hourly', + data: [], + label: 'Day', + variable: 'day', + stat: [], + range: [1, '3655'], + text: true, + color: [ + '#f7fcf5', + '#e5f5e0', + '#c7e9c0', + '#a1d99b', + '#74c476', + '#41ab5d', + '#238b45', + '#006d2c', + '#00441b', + ], + category: 'phone_use', + }, + ], + configurations: [ + { + range: [1, '3655'], + text: true, + variable: 'day', + label: 'Day', + color: [ + '#f7fcf5', + '#e5f5e0', + '#c7e9c0', + '#a1d99b', + '#74c476', + '#41ab5d', + '#238b45', + '#006d2c', + '#00441b', + ], + category: 'phone_use', + analysis: 'phone_power_activityScores_hourly', + }, + ], + consentDate: '2022-06-02T00:00:00.000Z', + }, + ...overrides, +}) +export const createAssessmentDayDataMetadata = (overrides = {}) => ({ + study: ' ', + participant: ' ', + assessment: ' ', + units: ' ', + start: ' ', + end: ' ', + time_end: ' ', + Consent: ' ', + Active: 1, + ...overrides, +}) + +export const createAsessmentVariable = (overrides = {}) => ({ + name: '', + ...overrides, +}) +export const createAssessment = (overrides = {}) => ({ + name: '', + ...overrides, +}) + +export const createStudy = (overrides = {}) => ({ + study: '', + updatedAt: '', + participants: [], + ...overrides, +}) + +export const createStudyTableRowData = (overrides = {}) => ({ + daysInStudy: 0, + numOfParticipants: 0, + study: '', + updatedAt: '', + ...overrides, +}) + +export const createSiteParticipant = (overrides = {}) => ({ + participant: ' ', + Active: 1, + Consent: '', + study: '', + daysInStudy: 0, + ...overrides, +}) diff --git a/test/testUtils.js b/test/testUtils.js new file mode 100644 index 00000000..8e0ae91e --- /dev/null +++ b/test/testUtils.js @@ -0,0 +1,1050 @@ +import { + createAssessmentDayData, + createSiteParticipant, + createStudy, +} from './fixtures' +import { + FILTERS_FORM, + INCLUSION_EXCLUSION_CRITERIA_FORM, + SOCIODEMOGRAPHICS_FORM, +} from '../server/constants' + +export const dayDataAssessments = [ + createAssessmentDayData({ + assessment: INCLUSION_EXCLUSION_CRITERIA_FORM, + participant: 'YA1', + study: 'YA', + dayData: [{ chrcrit_part: 1, day: 4 }], + }), + createAssessmentDayData({ + assessment: FILTERS_FORM, + participant: 'YA1', + study: 'YA', + dayData: [{ recruitment_status: 'recruited', day: 4 }], + }), + createAssessmentDayData({ + assessment: SOCIODEMOGRAPHICS_FORM, + participant: 'YA1', + study: 'YA', + dayData: [{ chrdemo_sexassigned: 2, day: 4 }], + }), + createAssessmentDayData({ + assessment: 'eeg', + participant: 'YA1', + study: 'YA', + dayData: [{ eeg: 'foo', var: 'var', baz: 'baz' }], + }), + createAssessmentDayData({ + assessment: 'eeg', + participant: 'YA2', + study: 'YA', + dayData: [{ day: 5, eeg: 'bar', var: 'var', baz: 'baz' }], + }), + createAssessmentDayData({ + assessment: INCLUSION_EXCLUSION_CRITERIA_FORM, + participant: 'YA2', + study: 'YA', + dayData: [{ chrcrit_part: 1, day: 4 }], + }), + createAssessmentDayData({ + assessment: FILTERS_FORM, + participant: 'YA2', + study: 'YA', + dayData: [{ recruitment_status: 'consented', day: 4 }], + }), + createAssessmentDayData({ + assessment: SOCIODEMOGRAPHICS_FORM, + participant: 'YA2', + study: 'YA', + dayData: [{ chrdemo_sexassigned: 2, day: 4 }], + }), + createAssessmentDayData({ + assessment: 'eeg', + participant: 'YA3', + study: 'YA', + dayData: [{ day: 2, eeg: 'bar', var: 'var', baz: 'baz' }], + }), + createAssessmentDayData({ + assessment: INCLUSION_EXCLUSION_CRITERIA_FORM, + participant: 'YA3', + study: 'YA', + dayData: [{ chrcrit_part: 1, day: 4 }], + }), + createAssessmentDayData({ + assessment: FILTERS_FORM, + participant: 'YA3', + study: 'YA', + dayData: [{ recruitment_status: 'recruited', day: 4 }], + }), + createAssessmentDayData({ + assessment: SOCIODEMOGRAPHICS_FORM, + participant: 'YA3', + study: 'YA', + dayData: [{ chrdemo_sexassigned: 2, day: 4 }], + }), + createAssessmentDayData({ + assessment: 'eeg', + participant: 'YA4', + study: 'YA', + dayData: [ + { day: 5, eeg: null, var: 'var', baz: 'baz' }, + { eeg: 'foo', var: 'var', baz: 'baz', day: 6 }, + ], + }), + createAssessmentDayData({ + assessment: SOCIODEMOGRAPHICS_FORM, + participant: 'YA4', + study: 'YA', + dayData: [{ chrdemo_sexassigned: 2, day: 4 }], + }), + createAssessmentDayData({ + assessment: INCLUSION_EXCLUSION_CRITERIA_FORM, + participant: 'YA4', + study: 'YA', + dayData: [{ chrcrit_part: 1, day: 4 }], + }), + createAssessmentDayData({ + assessment: FILTERS_FORM, + participant: 'YA4', + study: 'YA', + dayData: [{ recruitment_status: 'recruited', day: 4 }], + }), + createAssessmentDayData({ + assessment: 'eeg', + participant: 'MA1', + study: 'MA', + dayData: [{ day: 1, eeg: 'foo', var: 'var', baz: 'baz' }], + }), + createAssessmentDayData({ + assessment: FILTERS_FORM, + participant: 'MA1', + study: 'MA', + dayData: [{ recruitment_status: 'recruited', day: 4 }], + }), + createAssessmentDayData({ + assessment: INCLUSION_EXCLUSION_CRITERIA_FORM, + participant: 'MA1', + study: 'MA', + dayData: [{ chrcrit_part: 1, day: 4 }], + }), + createAssessmentDayData({ + assessment: SOCIODEMOGRAPHICS_FORM, + participant: 'MA1', + study: 'MA', + dayData: [{ chrdemo_sexassigned: 1, day: 4 }], + }), + createAssessmentDayData({ + assessment: 'eeg', + participant: 'MA2', + study: 'MA', + dayData: [{ day: 5, eeg: 'foo', var: 'var', baz: 'baz' }], + }), + createAssessmentDayData({ + assessment: FILTERS_FORM, + participant: 'MA2', + study: 'MA', + dayData: [{ recruitment_status: 'not recruited', day: 4 }], + }), + createAssessmentDayData({ + assessment: INCLUSION_EXCLUSION_CRITERIA_FORM, + participant: 'MA2', + study: 'MA', + dayData: [{ chrcrit_part: 1, day: 4 }], + }), + createAssessmentDayData({ + assessment: SOCIODEMOGRAPHICS_FORM, + participant: 'MA2', + study: 'MA', + dayData: [{ chrdemo_sexassigned: 1, day: 4 }], + }), + createAssessmentDayData({ + assessment: 'eeg', + participant: 'MA3', + study: 'MA', + dayData: [{ day: 2, eeg: 'foo', var: 'var', baz: 'baz' }], + }), + createAssessmentDayData({ + assessment: FILTERS_FORM, + participant: 'MA3', + study: 'MA', + dayData: [{ recruitment_status: 'recruited', day: 4 }], + }), + createAssessmentDayData({ + assessment: INCLUSION_EXCLUSION_CRITERIA_FORM, + participant: 'MA3', + study: 'MA', + dayData: [{ chrcrit_part: 1, day: 4 }], + }), + createAssessmentDayData({ + assessment: SOCIODEMOGRAPHICS_FORM, + participant: 'MA3', + study: 'MA', + dayData: [{ chrdemo_sexassigned: 1, day: 4 }], + }), + createAssessmentDayData({ + assessment: 'eeg', + participant: 'MA4', + study: 'MA', + dayData: [ + { day: 5, eeg: null, var: 'var', baz: 'baz' }, + { day: 7, eeg: 'foo', var: 'var', baz: 'baz' }, + ], + }), + createAssessmentDayData({ + assessment: FILTERS_FORM, + participant: 'MA4', + study: 'MA', + dayData: [{ recruitment_status: 'recruited', day: 4 }], + }), + createAssessmentDayData({ + assessment: INCLUSION_EXCLUSION_CRITERIA_FORM, + participant: 'MA4', + study: 'MA', + dayData: [{ chrcrit_part: 1, day: 4 }], + }), + createAssessmentDayData({ + assessment: SOCIODEMOGRAPHICS_FORM, + participant: 'MA4', + study: 'MA', + dayData: [{ chrdemo_sexassigned: 1, day: 4 }], + }), + createAssessmentDayData({ + assessment: 'eeg', + participant: 'LA1', + study: 'LA', + dayData: [{ eeg: 'foo', var: 'var', baz: 'baz' }], + }), + createAssessmentDayData({ + assessment: 'eeg', + participant: 'LA2', + study: 'LA', + dayData: [{ day: 5, eeg: 'foo', var: 'var', baz: 'baz' }], + }), + createAssessmentDayData({ + assessment: 'eeg', + participant: 'LA3', + study: 'LA', + dayData: [{ day: 2, eeg: 'foo', var: 'var', baz: 'baz' }], + }), + createAssessmentDayData({ + assessment: 'eeg', + participant: 'LA4', + study: 'LA', + dayData: [ + { day: 5, eeg: null, var: 'var', baz: 'baz' }, + { eeg: 'foo', var: 'var', baz: 'baz' }, + ], + }), +] + +export const chartsDataSuccessResponse = (overrides = {}) => ({ + chartOwner: { + display_name: 'Display Name', + icon: 'icon', + uid: 'owl', + }, + chart_id: '', + dataBySite: [ + { + counts: { + Bar: 2, + Foo: 2, + 'N/A': 0, + Total: 4, + }, + siteCode: 'YA', + name: 'Yale', + percentages: { + Bar: 50, + Foo: 50, + 'N/A': 0, + }, + targets: { + Bar: 1, + Foo: 3, + Total: 4, + }, + totalsForStudy: { + count: 4, + targetTotal: 4, + }, + }, + { + counts: { + Bar: 2, + Foo: 10, + 'N/A': 2, + Total: 12, + }, + siteCode: 'Totals', + name: 'Totals', + percentages: { + Bar: 14.285714285714285, + Foo: 71.42857142857143, + 'N/A': 14.285714285714285, + }, + targets: { + Bar: 5, + Foo: 9, + Total: 14, + }, + totalsForStudy: { + count: 12, + targetTotal: 14, + }, + }, + { + counts: { + Bar: 0, + Foo: 4, + 'N/A': 1, + Total: 4, + }, + siteCode: 'MA', + name: 'Madrid', + percentages: { + Bar: 0, + Foo: 80, + 'N/A': 20, + }, + targets: { + Bar: 2, + Foo: 3, + Total: 5, + }, + totalsForStudy: { + count: 4, + targetTotal: 5, + }, + }, + { + counts: { + Bar: 0, + Foo: 4, + 'N/A': 1, + Total: 4, + }, + siteCode: 'LA', + name: 'UCLA', + percentages: { + Bar: 0, + Foo: 80, + 'N/A': 20, + }, + targets: { + Bar: 2, + Foo: 3, + Total: 5, + }, + totalsForStudy: { + count: 4, + targetTotal: 5, + }, + }, + ], + description: 'Participant EEG Measurements', + filters: { + chrcrit_part: { + HC: { + label: 'HC', + value: 0, + }, + CHR: { + label: 'CHR', + value: 0, + }, + Missing: { + label: 'Missing', + value: 0, + }, + }, + + sex_at_birth: { + Male: { + label: 'Male', + value: 0, + }, + Female: { + label: 'Female', + value: 0, + }, + Missing: { + label: 'Missing', + value: 0, + }, + }, + sites: { + YA: { label: 'YA', value: 1 }, + LA: { label: 'LA', value: 1 }, + MA: { label: 'MA', value: 1 }, + }, + networks: { + PRESCIENT: { label: 'PRESCIENT', value: 0 }, + ProNET: { label: 'ProNET', value: 0 }, + }, + recruitment_status: { + 'Not recruited': { + label: 'Not Recruited', + value: 0, + }, + + Recruited: { + label: 'Recruited', + value: 0, + }, + }, + }, + graphTable: { + tableColumns: [ + { + dataProperty: 'site', + label: 'Site Name', + sortable: true, + }, + { + dataProperty: 'siteCode', + label: 'Site Code', + sortable: false, + }, + { + dataProperty: 'Foo', + label: 'Foo', + sortable: false, + }, + { + dataProperty: 'Bar', + label: 'Bar', + sortable: false, + }, + { + dataProperty: 'Total', + label: 'Total', + sortable: false, + }, + ], + tableRows: [ + { + Bar: '0 / 2 (0%)', + Foo: '4 / 3 (133%)', + 'N/A': '1', + Total: '4 / 5 (80%)', + site: 'Madrid', + siteCode: 'MA', + }, + { + Bar: '0 / 2 (0%)', + Foo: '4 / 3 (133%)', + 'N/A': '1', + Total: '4 / 5 (80%)', + site: 'UCLA', + siteCode: 'LA', + }, + { + Bar: '2 / 1 (200%)', + Foo: '2 / 3 (67%)', + 'N/A': '0', + Total: '4 / 4 (100%)', + site: 'Yale', + siteCode: 'YA', + }, + { + Bar: '2 / 5 (40%)', + Foo: '10 / 9 (111%)', + 'N/A': '2', + Total: '12 / 14 (86%)', + site: 'Totals', + siteCode: 'Totals', + }, + ], + }, + labels: [ + { + color: '#e2860a', + name: 'Foo', + }, + { + color: 'red', + name: 'Bar', + }, + { + color: '#808080', + name: 'N/A', + }, + ], + legend: [ + { + name: 'Foo', + symbol: { + fill: '#e2860a', + type: 'rect', + }, + }, + { + name: 'Bar', + symbol: { + fill: 'red', + type: 'rect', + }, + }, + ], + studyTotals: { + Madrid: { + count: 4, + targetTotal: 5, + }, + Totals: { + count: 12, + targetTotal: 14, + }, + UCLA: { + count: 4, + targetTotal: 5, + }, + Yale: { + count: 4, + targetTotal: 4, + }, + }, + title: 'Eeg Measurements', + userSites: ['LA', 'MA', 'YA'], + lastModified: '', + ...overrides, +}) + +export const chartsDataInitialResponse = (overrides = {}) => ({ + chart_id: '', + chartOwner: { + display_name: 'Display Name', + icon: 'icon', + uid: 'owl', + }, + dataBySite: [ + { + counts: { + Bar: 1, + Foo: 2, + 'N/A': 1, + Total: 3, + }, + name: 'Yale', + percentages: { + Bar: 25, + Foo: 50, + 'N/A': 25, + }, + siteCode: 'YA', + targets: { + Bar: 1, + Foo: 3, + Total: 4, + }, + totalsForStudy: { + count: 3, + targetTotal: 4, + }, + }, + { + counts: { + Bar: 1, + Foo: 5, + 'N/A': 8, + Total: 6, + }, + name: 'Totals', + percentages: { + Bar: 7.142857142857142, + Foo: 35.714285714285715, + 'N/A': 57.14285714285714, + }, + siteCode: 'Totals', + targets: { + Bar: 3, + Foo: 6, + Total: 14, + }, + totalsForStudy: { + count: 6, + targetTotal: 14, + }, + }, + { + counts: { + Bar: 0, + Foo: 3, + 'N/A': 2, + Total: 3, + }, + name: 'Madrid', + percentages: { + Bar: 0, + Foo: 60, + 'N/A': 40, + }, + siteCode: 'MA', + targets: { + Bar: 2, + Foo: 3, + Total: 5, + }, + totalsForStudy: { + count: 3, + targetTotal: 5, + }, + }, + ], + description: 'Participant EEG Measurements', + filters: { + chrcrit_part: { + CHR: { + label: 'CHR', + value: 1, + }, + HC: { + label: 'HC', + value: 1, + }, + Missing: { + label: 'Missing', + value: 1, + }, + }, + networks: { + PRESCIENT: { + label: 'PRESCIENT', + value: 0, + }, + ProNET: { + label: 'ProNET', + value: 0, + }, + }, + recruitment_status: { + 'Not recruited': { + label: 'Not Recruited', + value: 0, + }, + Recruited: { + label: 'Recruited', + value: 1, + }, + }, + sex_at_birth: { + Female: { + label: 'Female', + value: 1, + }, + Male: { + label: 'Male', + value: 1, + }, + Missing: { + label: 'Missing', + value: 1, + }, + }, + sites: { + LA: { + label: 'LA', + value: 1, + }, + MA: { + label: 'MA', + value: 1, + }, + YA: { + label: 'YA', + value: 1, + }, + }, + }, + graphTable: { + tableColumns: [ + { + dataProperty: 'site', + label: 'Site Name', + sortable: true, + }, + { + dataProperty: 'siteCode', + label: 'Site Code', + sortable: false, + }, + { + dataProperty: 'Foo', + label: 'Foo', + sortable: false, + }, + { + dataProperty: 'Bar', + label: 'Bar', + sortable: false, + }, + { + dataProperty: 'Total', + label: 'Total', + sortable: false, + }, + ], + tableRows: [ + { + Bar: '0 / 2 (0%)', + Foo: '3 / 3 (100%)', + 'N/A': '2', + Total: '3 / 5 (60%)', + site: 'Madrid', + siteCode: 'MA', + }, + { + Bar: '1 / 1 (100%)', + Foo: '2 / 3 (67%)', + 'N/A': '1', + Total: '3 / 4 (75%)', + site: 'Yale', + siteCode: 'YA', + }, + { + Bar: '1 / 3 (33%)', + Foo: '5 / 6 (83%)', + 'N/A': '8', + Total: '6 / 14 (43%)', + site: 'Totals', + siteCode: 'Totals', + }, + ], + }, + labels: [ + { + color: '#e2860a', + name: 'Foo', + }, + { + color: 'red', + name: 'Bar', + }, + { + color: '#808080', + name: 'N/A', + }, + ], + lastModified: '', + legend: [ + { + name: 'Foo', + symbol: { + fill: '#e2860a', + type: 'rect', + }, + }, + { + name: 'Bar', + symbol: { + fill: 'red', + type: 'rect', + }, + }, + ], + studyTotals: { + Madrid: { + count: 3, + targetTotal: 5, + }, + Totals: { + count: 6, + targetTotal: 14, + }, + UCLA: { + count: 0, + targetTotal: 5, + }, + Yale: { + count: 3, + targetTotal: 4, + }, + }, + title: 'Eeg Measurements', + userSites: ['LA', 'MA', 'YA'], + ...overrides, +}) + +export const chartsDataFilterResponse = (overrides = {}) => ({ + chart_id: '', + chartOwner: { + display_name: 'Display Name', + icon: 'icon', + uid: 'owl', + }, + dataBySite: [ + { + counts: { + Bar: 0, + Foo: 1, + 'N/A': 4, + Total: 1, + }, + name: 'Madrid', + percentages: { + Bar: 0, + Foo: 20, + 'N/A': 80, + }, + siteCode: 'MA', + targets: { + Bar: 2, + Foo: 3, + Total: 5, + }, + totalsForStudy: { + count: 1, + targetTotal: 5, + }, + }, + { + counts: { + Foo: 1, + 'N/A': 13, + Total: 1, + }, + name: 'Totals', + percentages: { + Foo: 7.142857142857142, + 'N/A': 92.85714285714286, + }, + siteCode: 'Totals', + targets: { + Bar: 2, + Foo: 3, + Total: 14, + }, + totalsForStudy: { + count: 1, + targetTotal: 14, + }, + }, + ], + description: 'Participant EEG Measurements', + filters: { + chrcrit_part: { + CHR: { + label: 'CHR', + value: 0, + }, + HC: { + label: 'HC', + value: 0, + }, + Missing: { + label: 'Missing', + value: 0, + }, + }, + networks: { + PRESCIENT: { + label: 'PRESCIENT', + value: 0, + }, + ProNET: { + label: 'ProNET', + value: 0, + }, + }, + recruitment_status: { + 'Not recruited': { + label: 'Not Recruited', + value: 1, + }, + Recruited: { + label: 'Recruited', + value: 0, + }, + }, + sex_at_birth: { + Female: { + label: 'Female', + value: 0, + }, + Male: { + label: 'Male', + value: 1, + }, + Missing: { + label: 'Missing', + value: 0, + }, + }, + sites: { + LA: { + label: 'LA', + value: 1, + }, + MA: { + label: 'MA', + value: 1, + }, + YA: { + label: 'YA', + value: 1, + }, + }, + }, + graphTable: { + tableColumns: [ + { + dataProperty: 'site', + label: 'Site Name', + sortable: true, + }, + { + dataProperty: 'siteCode', + label: 'Site Code', + sortable: false, + }, + { + dataProperty: 'Foo', + label: 'Foo', + sortable: false, + }, + { + dataProperty: 'Bar', + label: 'Bar', + sortable: false, + }, + { + dataProperty: 'Total', + label: 'Total', + sortable: false, + }, + ], + tableRows: [ + { + Bar: '0 / 2 (0%)', + Foo: '1 / 3 (33%)', + 'N/A': '4', + Total: '1 / 5 (20%)', + site: 'Madrid', + siteCode: 'MA', + }, + { + Foo: '1 / 3 (33%)', + 'N/A': '13', + Total: '1 / 14 (7%)', + site: 'Totals', + siteCode: 'Totals', + }, + ], + }, + labels: [ + { + color: '#e2860a', + name: 'Foo', + }, + { + color: 'red', + name: 'Bar', + }, + { + color: '#808080', + name: 'N/A', + }, + ], + lastModified: '', + legend: [ + { + name: 'Foo', + symbol: { + fill: '#e2860a', + type: 'rect', + }, + }, + { + name: 'Bar', + symbol: { + fill: 'red', + type: 'rect', + }, + }, + ], + studyTotals: { + Madrid: { + count: 1, + targetTotal: 5, + }, + Totals: { + count: 1, + targetTotal: 14, + }, + UCLA: { + count: 0, + targetTotal: 5, + }, + Yale: { + count: 0, + targetTotal: 4, + }, + }, + title: 'Eeg Measurements', + userSites: ['LA', 'MA', 'YA'], + ...overrides, +}) + +export const createStudies = () => [ + createStudy({ + study: 'YA', + updatedAt: new Date('01-05-2024'), + participants: [ + createSiteParticipant({ + participant: 'YA1', + Active: 1, + Consent: '2022-06-02', + study: 'YA', + daysInStudy: 55, + }), + createSiteParticipant({ + participant: 'YA2', + Active: 1, + Consent: '2022-06-02', + study: 'YA', + daysInStudy: 105, + }), + ], + }), + createStudy({ + study: 'MA', + updatedAt: new Date('01-05-2024'), + participants: [ + createSiteParticipant({ + participant: 'MA1', + Active: 1, + Consent: '2022-06-02', + study: 'MA', + daysInStudy: 55, + }), + createSiteParticipant({ + participant: 'MA2', + Active: 1, + Consent: '2022-06-02', + study: 'MA', + daysInStudy: 1005, + }), + ], + }), + createStudy({ + study: 'LA', + updatedAt: new Date('01-05-2024'), + participants: [ + createSiteParticipant({ + participant: 'LA1', + Active: 1, + Consent: '2022-06-02', + study: 'LA', + daysInStudy: 655, + }), + createSiteParticipant({ + participant: 'LA2', + Active: 1, + Consent: '2022-06-02', + study: 'LA', + daysInStudy: 5, + }), + ], + }), +] diff --git a/ts_bin/dpdash-cdk.ts b/ts_bin/dpdash-cdk.ts new file mode 100644 index 00000000..27cd031c --- /dev/null +++ b/ts_bin/dpdash-cdk.ts @@ -0,0 +1,18 @@ +#!/usr/bin/env node +import 'source-map-support/register' +import * as cdk from 'aws-cdk-lib' +import { DpdashCdkStack } from '../cdk_lib/dpdash-cdk-stack' + +const app = new cdk.App() +new DpdashCdkStack(app, 'DpdashCdkStack', { + /* If you don't specify 'env', this stack will be environment-agnostic. + * Account/Region-dependent features and context lookups will not work, + * but a single synthesized template can be deployed anywhere. */ + /* Uncomment the next line to specialize this stack for the AWS Account + * and Region that are implied by the current CLI configuration. */ + // env: { account: process.env.CDK_DEFAULT_ACCOUNT, region: process.env.CDK_DEFAULT_REGION }, + /* Uncomment the next line if you know exactly what Account and Region you + * want to deploy the stack to. */ + // env: { account: '123456789012', region: 'us-east-1' }, + /* For more information, see https://docs.aws.amazon.com/cdk/latest/guide/environments.html */ +}) diff --git a/tsconfig.json b/tsconfig.json new file mode 100644 index 00000000..813ff9e6 --- /dev/null +++ b/tsconfig.json @@ -0,0 +1,32 @@ +{ + "compilerOptions": { + "target": "ES2020", + "module": "commonjs", + "lib": ["es2020", "dom"], + "declaration": true, + "strict": true, + "noImplicitAny": true, + "strictNullChecks": true, + "noImplicitThis": true, + "alwaysStrict": true, + "noUnusedLocals": false, + "noUnusedParameters": false, + "noImplicitReturns": true, + "noFallthroughCasesInSwitch": false, + "inlineSourceMap": true, + "inlineSources": true, + "experimentalDecorators": true, + "strictPropertyInitialization": false, + "typeRoots": ["./node_modules/@types"] + }, + "exclude": [ + "node_modules", + "public", + "constants", + "server", + "template", + "test", + "views", + "cdk.out" + ] +} diff --git a/utils/crypto/hash.js b/utils/crypto/hash.js deleted file mode 100755 index 019187b9..00000000 --- a/utils/crypto/hash.js +++ /dev/null @@ -1,27 +0,0 @@ -#!/usr/bin/env node - -var crypto = require('crypto'); - -function encrypt(text, algorithm, secret) { - var cipher = crypto.createCipher(algorithm, secret); - var crypted = cipher.update(text,'utf8','hex'); - crypted += cipher.final('hex'); - return crypted; -} - -function decrypt(text, algorithm, secret) { - var decipher = crypto.createDecipher(algorithm, secret); - var dec = decipher.update(text,'hex','utf8'); - dec += decipher.final('utf8'); - return dec; -} - -module.exports = (text, algorithm, method, secret) => { - if(method == 'encrypt') { - return encrypt(text, algorithm, secret); - } else if (method == 'decrypt') { - return decrypt(text, algorithm, secret); - } else { - return null; - } -}; diff --git a/utils/dateConverter.js b/utils/dateConverter.js deleted file mode 100644 index d89b4e18..00000000 --- a/utils/dateConverter.js +++ /dev/null @@ -1,18 +0,0 @@ -function stringToDate(_date,_format,_delimiter) { - let formatLowerCase=_format.toLowerCase(); - let formatItems=formatLowerCase.split(_delimiter); - let dateItems=_date.split(_delimiter); - let monthIndex=formatItems.indexOf("mm"); - let dayIndex=formatItems.indexOf("dd"); - let yearIndex=formatItems.indexOf("yyyy"); - let month=parseInt(dateItems[monthIndex]); - let year=(dateItems[yearIndex].length == 2 ? '20' + dateItems[yearIndex] : dateItems[yearIndex]); - return new Date(year,--month,dateItems[dayIndex]); -} -function diffDates(date1, date2) { - let millisecondsPerDay = 24 * 60 * 60 * 1000; - return Math.round((date2-date1)/millisecondsPerDay); -} - -exports.diffDates = diffDates; -exports.stringToDate = stringToDate; diff --git a/utils/importer.js b/utils/importer.js deleted file mode 100755 index c66adcef..00000000 --- a/utils/importer.js +++ /dev/null @@ -1,79 +0,0 @@ -#!/usr/bin/env node - -var configPath = process.env.DPDASH_CONFIG || '../config'; -var config = require(configPath); -var amqp = require('amqplib/callback_api'); -var MongoClient = require('mongodb').MongoClient; -const uuidV4 = require('uuid/v4'); - -function dataImport() { - console.log('INFO - data - connecting to queue'); - var amqpAddress = 'amqps://' + config.rabbitmq.username; - amqpAddress = amqpAddress + ':' + config.rabbitmq.password; - amqpAddress = amqpAddress + '@' + config.rabbitmq.host + ':' + config.rabbitmq.port; - amqp.connect(amqpAddress, config.rabbitmq.opts, function(err, conn) { - if (err) { - console.log('ERROR - rabbimtq - ' + err); - return; - } - conn.createChannel(function(err, ch) { - if (err) { - console.log('ERROR - rabbimtq - ' + err); - return; - } - ch.assertQueue('', {durable: false}, function(err, q) { - if (err) { - console.log('ERROR - rabbimtq - ' + err); - return; - } - var correlationId = uuidV4(); - ch.consume(q.queue, function(msg) { - if (msg.properties.correlationId == correlationId) { - console.log('rabbitmq - cron - ' + msg.content.toString()); - } - var messageContent = JSON.parse(msg.content); - var messageStatus = messageContent.status; - if(messageStatus) { - if (messageStatus == 'SUCCESS') { - console.log('rabbitmq - cron - success. exiting...'); - process.exit(0); - } else if (messageStatus == 'FAILURE') { - console.log('rabbitmq - cron - failed.'); - process.exit(1); - } else if (messageStatus.startsWith('PROCESSING')) { - console.log(messageStatus); - }else { - console.log('rabbitmq - cron - failed. reason unknown. exiting'); - process.exit(1); - } - } - }); - - var message = {}; - message.id = correlationId; - message.task = 'import'; - message.args = [ - config.app.rootDir, - config.app.rootDir, - '', - '', - config.database.mongo.username, - config.database.mongo.password, - config.database.mongo.host, - config.database.mongo.port, - config.database.mongo.authSource, - config.database.mongo.dataDB - ]; - message.kwargs = {}; - message.retries = 0; - - var sent = ch.sendToQueue( - config.rabbitmq.publisherQueue, - new Buffer(JSON.stringify(message)), - { correlationId: correlationId, contentType: 'application/json', replyTo: q.queue } - ); - }); - }); - }); -} -dataImport(); diff --git a/utils/invertColor.js b/utils/invertColor.js deleted file mode 100644 index c3bdf123..00000000 --- a/utils/invertColor.js +++ /dev/null @@ -1,30 +0,0 @@ -/* http://stackoverflow.com/a/35970186 */ -function padZero(str, len) { - len = len || 2 - let zeros = new Array(len).join('0') - - return (zeros + str).slice(-len) -} -function getColor(hex, bw) { - if (hex.indexOf('#') === 0) { - hex = hex.slice(1) - } - - let r = parseInt(hex.slice(0, 2), 16) - let g = parseInt(hex.slice(2, 4), 16) - let b = parseInt(hex.slice(4, 6), 16) - - if (bw) { - return (r * 0.299 + g * 0.587 + b * 0.114) > 186 - ? '#000000' - : '#FFFFFF' - } - - r = (255 - r).toString(16) - g = (255 - g).toString(16) - b = (255 - b).toString(16) - - return "#" + padZero(r) + padZero(g) + padZero(b) -} - -exports.getColor = getColor; diff --git a/utils/passport/ldap.js b/utils/passport/ldap.js deleted file mode 100755 index ec18317c..00000000 --- a/utils/passport/ldap.js +++ /dev/null @@ -1,212 +0,0 @@ -var configPath = process.env.DPDASH_CONFIG || '../../config'; -var config = require(configPath); -var defaultUserConfigPath = process.env.DPDASH_DASHBOARD_CONFIG_DEFAULT || '../../defaultUserConfig'; -var defaultUserConfig = require(defaultUserConfigPath); -var passport = require('passport'); -var MongoDB = require('mongodb'); -var MongoClient = MongoDB.MongoClient; - -function getRealms(user) { - if(user != null && user.realms) { - return user.realms; - } else { - config.app.realms; - } -} - -function getUserIcon(user) { - if(user != null && user.icon) { - return user.icon; - } else { - return ''; - } -} - -function getUserRoles(user) { - if(user != null && user.role) { - return user.role; - } else { - return "member"; - } -} -function getUserAccess(user) { - if(user != null && user.access) { - return user.access; - } else { - return []; - } -} - -function getUserBlocked(user) { - if(user != null && user.blocked) { - return user.blocked; - } else { - return false; - } -} - -function getUserName(user, ldap_name) { - if(user != null && user.display_name) { - return user.display_name; - } else if (ldap_name){ - return ldap_name; - } else { - return ''; - } -} - -function getUserMail(user, ldap_email) { - if(user != null && user.mail) { - return user.mail; - } else if (ldap_email){ - return ldap_email; - } else { - return ''; - } -} - -function getUserTitle(user, ldap_title) { - if(user != null && user.title) { - return user.title; - } else if (ldap_title){ - return ldap_title; - } else { - return ''; - } -} - -function getUserDpt(user, ldap_dpt) { - if(user != null && user.department) { - return user.department; - } else if (ldap_dpt){ - return ldap_dpt; - } else { - return ''; - } -} - -function getUserCompany(user, ldap_company) { - if(user != null && user.company) { - return user.company; - } else if (ldap_company){ - return ldap_company; - } else { - return ''; - } -} - -module.exports = (req, res, next) => { - passport.serializeUser(function(user, done) { - done(null, user.uid); - }); - - passport.deserializeUser(function(user, done) { - done(null, user); - }); - passport.authenticate('ldapauth', {session: true}, function(err, user, info) { - if(err) { - return res.redirect('/login?e=' + err); - } - if(!user) { - return res.redirect('/login?e=forbidden'); - } - req.login(user, function(err) { - if (err) { - return next(err); - } else { - var mongoURI = 'mongodb://' + config.database.mongo.username + ':'; - mongoURI = mongoURI + config.database.mongo.password + '@' + config.database.mongo.host; - mongoURI = mongoURI + ':' + config.database.mongo.port + '/' + config.database.mongo.authSource; - MongoClient.connect(mongoURI, config.database.mongo.server, function(err, client) { - if (err) { - console.error(err.message); - return res.redirect('/login?e=forbidden'); - } - const mongodb = client.db(config.database.mongo.appDB); - var uid = user.uid; - mongodb.collection('users').findOne( - {uid: uid}, - {realms : 1, role: 1, icon: 1, access: 1, blocked: 1}, - function (err, userObj) { - if(err){ - console.error(err.message); - } - var userRealms = getRealms(userObj); - var userIcon = getUserIcon(userObj); - var userName = getUserName(userObj, user.cn); - var userRoles = getUserRoles(userObj); - var userAccess = getUserAccess(userObj); - var userBlocked = getUserBlocked(userObj); - var userMail = getUserMail(userObj, user.mail); - var userDpt = getUserDpt(userObj, user.department); - var userCompany = getUserCompany(userObj, user.company); - var userTitle = getUserTitle(userObj, user.title); - - mongodb.collection('configs').findOne( - {owner: uid}, - function(err, configObj) { - if(err){ - console.error(err.message); - } - if(!configObj) { - var defaultConfig = { - owner: uid, - config: defaultUserConfig, - name: 'default', - type: 'matrix', - readers : [uid], - created: (new Date()).toUTCString() - }; - mongodb.collection('configs').insertOne(defaultConfig); - } - mongodb.collection('users').findOneAndUpdate( - {uid: uid}, - { - $set: { - display_name: userName, - title: userTitle, - department: userDpt, - company: userCompany, - mail: userMail, - member_of: user.memberOf, - bad_pwd_count: user.badPwdCount, - lockout_time: user.lockoutTime, - last_logoff: user.lastLogoff, - last_logon: user.lastLogon, - account_expires: user.accountExpires, - password: null, - ldap: true, - force_reset_pw: false, - realms: userRealms, - icon: userIcon, - role: userRoles, - blocked: userBlocked, - access: userAccess - } - }, - { - upsert: true, - returnOriginal: false, - }, - function(err, userinfo) { - if(err) { - console.error(err.message); - } - client.close(); - req.session.role = userRoles; - req.session.display_name = userName; - req.session.mail = userMail; - req.session.celery_tasks = []; - req.session.icon = userIcon; - return res.redirect('/'); - }); - }); - - }); - - }); - - } - }); - })(req, res, next); -}; diff --git a/utils/passport/local-login.js b/utils/passport/local-login.js deleted file mode 100755 index 39004660..00000000 --- a/utils/passport/local-login.js +++ /dev/null @@ -1,90 +0,0 @@ -var passport = require('passport'); -var configPath = process.env.DPDASH_CONFIG || '../../config'; -var config = require(configPath); -var defaultUserConfigPath = process.env.DPDASH_DASHBOARD_CONFIG_DEFAULT || '../../defaultUserConfig'; -var defaultUserConfig = require(defaultUserConfigPath); -var MongoDB = require('mongodb'); -var MongoClient = MongoDB.MongoClient; - -module.exports = (req, res, next, user) => { - //validate submitted password - var hashedPassword = require('../crypto/hash')(req.body.password, 'aes-256-ctr', 'encrypt', config.app.secret); - if (user.password != hashedPassword) { - return res.redirect('/login?e=forbidden'); - } - //passport local log-in serializer - passport.serializeUser(function(user, done) { - done(null, user.uid); - }); - passport.deserializeUser(function(user, done) { - done(null, user); - }); - //If the user exists, serialize the user to the session - req.login(user, function(err) { - if (err) { - return next(err); - } else { - var mongoURI = 'mongodb://' + config.database.mongo.username + ':'; - mongoURI = mongoURI + config.database.mongo.password + '@' + config.database.mongo.host; - mongoURI = mongoURI + ':' + config.database.mongo.port + '/' + config.database.mongo.authSource; - MongoClient.connect(mongoURI, config.database.mongo.server, function(err, client) { - if (err) { - console.error(err.message); - return res.redirect('/login?e=forbidden'); - } - const mongodb = client.db(config.database.mongo.appDB); - var uid = user.uid; - mongodb.collection('configs').findOne( - {owner: uid}, - function(err, configObj) { - if(err){ - console.error(err.message); - } - if(!configObj) { - var defaultConfig = { - owner: uid, - config: defaultUserConfig, - name: 'default', - type: 'matrix', - readers : [uid], - created: (new Date()).toUTCString() - }; - mongodb.collection('configs').insertOne(defaultConfig); - } - mongodb.collection('users').findOneAndUpdate( - {uid: user.uid}, - { - $set: { - last_logon: Date.now() - } - }, - { - projection : { - _id : 0, - uid : 1, - display_name : 1, - acl : 1, - role: 1, - icon: 1, - mail: 1 - }, - returnOriginal: false, - upsert: true - }, - function(err, userinfo) { - if(err) { - console.error(err.message); - } - client.close(); - req.session.role = userinfo.value.role; - req.session.display_name = userinfo.value.display_name; - req.session.mail = userinfo.value.mail; - req.session.celery_tasks = []; - req.session.icon = userinfo.value.icon; - return res.redirect('/'); - }); - }); - }); - } - }); -}; diff --git a/utils/passport/local-signup.js b/utils/passport/local-signup.js deleted file mode 100755 index 7b7820e6..00000000 --- a/utils/passport/local-signup.js +++ /dev/null @@ -1,96 +0,0 @@ -var passport = require('passport'); -var configPath = process.env.DPDASH_CONFIG || '../../config'; -var config = require(configPath); -var defaultUserConfigPath = process.env.DPDASH_DASHBOARD_CONFIG_DEFAULT || '../../defaultUserConfig'; -var defaultUserConfig = require(defaultUserConfigPath); -var MongoDB = require('mongodb'); -var MongoClient = MongoDB.MongoClient; - -module.exports = (req, res, next) => { - passport.authenticate('local-signup', {session: true}, function(err, user, reqBody) { - if(err) { - return res.redirect('/login?e=' + err); - } - if(user) { - return res.redirect('/signup?e=existingUser'); - } - var password = reqBody.password; - var username = reqBody.username; - var email = reqBody.email; - var display_name = reqBody.display_name; - - var mongoURI = 'mongodb://' + config.database.mongo.username + ':'; - mongoURI = mongoURI + config.database.mongo.password + '@' + config.database.mongo.host; - mongoURI = mongoURI + ':' + config.database.mongo.port + '/' + config.database.mongo.authSource; - MongoClient.connect(mongoURI, config.database.mongo.server, function(err, client) { - if (err) { - console.error(err.message); - return res.redirect('/login?e=forbidden'); - } - const mongodb = client.db(config.database.mongo.appDB); - var hashedPW = require('../crypto/hash')(password, 'aes-256-ctr', 'encrypt', config.app.secret); - mongodb.collection('users').findOneAndUpdate( - {uid: username}, - { - $set: { - display_name: display_name, - title: '', - department: '', - company: '', - mail: email, - member_of: '', - bad_pwd_count: 0, - lockout_time: 0, - last_logoff: Date.now(), - last_logon: Date.now(), - account_expires: null, - password: hashedPW, - ldap: false, - force_reset_pw: false, - realms: config.app.realms, - icon: '', - access:[], - blocked: false, - role: "member" - } - }, - { - projection : { - _id : 0, - uid : 1, - display_name : 1, - acl : 1, - role: 1, - icon: 1, - mail: 1 - }, - returnOriginal: false, - upsert: true - }, - function(err, userinfo) { - if(err) { - console.error(err.message); - } - - var defaultConfig = { - owner: username, - config: defaultUserConfig, - name: 'default', - type: 'matrix', - readers : [username], - created: (new Date()).toUTCString() - }; - mongodb.collection('configs').insertOne(defaultConfig); - client.close(); - - req.session.role = userinfo.value.role; - req.session.uid = userinfo.value.uid; - req.session.display_name = userinfo.value.display_name; - req.session.mail = userinfo.value.mail; - req.session.celery_tasks = []; - req.session.icon = userinfo.value.icon; - return res.redirect('/'); - }); - }); - })(req, res, next); -}; diff --git a/views/AbstractGraph.d3.js b/views/AbstractGraph.d3.js deleted file mode 100755 index 1c612475..00000000 --- a/views/AbstractGraph.d3.js +++ /dev/null @@ -1,17 +0,0 @@ -import * as d3 from 'd3'; - -export default class AbstractGraph { - constructor(el, props) { - this.el = el; - this.props = props; - } - unmount() { - this.el.remove(); - } - create() { - - } - update() { - - } -} \ No newline at end of file diff --git a/views/Account.react.js b/views/Account.react.js deleted file mode 100644 index 91393fad..00000000 --- a/views/Account.react.js +++ /dev/null @@ -1,515 +0,0 @@ -import React, {Component} from 'react'; -import {connect} from 'react-redux'; -import moment from 'moment'; -import 'whatwg-fetch'; -import update from 'immutability-helper'; - -import Avatar from '@material-ui/core/Avatar'; -import Typography from '@material-ui/core/Typography'; -import Person from '@material-ui/icons/Person'; -import AppBar from '@material-ui/core/AppBar'; -import Toolbar from '@material-ui/core/Toolbar'; -import TextField from '@material-ui/core/TextField'; -import IconButton from '@material-ui/core/IconButton'; -import ColorLens from '@material-ui/icons/ColorLens'; -import Button from '@material-ui/core/Button'; -import Tooltip from '@material-ui/core/Tooltip'; -import ButtonBase from '@material-ui/core/ButtonBase'; -import Snackbar from '@material-ui/core/Snackbar'; - -import {compose} from 'redux'; -import { withStyles } from '@material-ui/core/styles'; -import DrawerComponent from './Drawer.react'; -import Drawer from '@material-ui/core/Drawer'; -const drawerWidth = 200; -import Hidden from '@material-ui/core/Hidden'; -const styles = theme => ({ - root: { - flexGrow: 1, - height: '100vh', - zIndex: 1, - overflow: 'hidden', - position: 'relative', - display: 'flex', - width: '100%', - }, - appBar: { - position: 'absolute', - marginLeft: drawerWidth, - [theme.breakpoints.up('md')]: { - width: `calc(100% - ${drawerWidth}px)`, - }, - borderLeft: '1px solid rgba(0, 0, 0, 0.12)', - backgroundColor: 'white', - color: 'rgba(0, 0, 0, 0.54)' - }, - navIconHide: { - [theme.breakpoints.up('md')]: { - display: 'none', - }, - }, - drawerPaper: { - width: drawerWidth, - [theme.breakpoints.up('md')]: { - position: 'relative', - }, - borderRight: '0px' - }, - content: { - borderLeft: '1px solid rgba(0, 0, 0, 0.12)', - flexGrow: 1, - backgroundColor: '#fefefe', - padding: theme.spacing.unit * 3, - marginTop: '64px', - } -}); - -class AccountPage extends Component { - constructor(props) { - super(props); - this.state = { - user: {}, - _id: '', - uid: '', - display_name : '', - title: '', - department: '', - company: '', - mail: '', - ldap: '', - icon: '', - totalStudies: 0, - totalSubjects: 0, - totalDays : 0, - snackTime: false, - mobileOpen: false - }; - } - componentDidUpdate() { - } - componentWillMount() { - this.fetchUserInfo(this.props.user.uid); - this.setState({ - user : this.props.user - }); - this.fetchSubjects(); - } - componentDidMount() { - } - componentWillUnmount() { - } - handleDrawerToggle = () => { - this.setState(state => ({ mobileOpen: !state.mobileOpen })); - }; - fetchSubjects = () => { - return window.fetch('/api/v1/studies', { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - let studies = response ? response : []; - window.fetch('/api/v1/subjects?q=' + JSON.stringify(studies), { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - this.autocomplete(response) - }); - }); - } - getAvatar = (icon) => { - var username = this.state.display_name; - var uid = this.state.uid; - if(icon == '' || icon == undefined) { - if(username == '' || username == undefined) { - if(uid && uid.length > 0) { - return ( - - {uid[0]} - - ); - } else { - return ( - - - - ); - } - } else { - return ( - - {username[0]} - - ); - } - } else { - return ( - - ); - } - } - autocomplete = (acl) => { - var options = []; - for(var study = 0; study < acl.length; study++) { - Array.prototype.push.apply(options, acl[study].subjects); - } - this.setState({ - totalStudies: acl.length, - totalSubjects: options.length, - totalDays: Math.max.apply(Math, options.map(function(o) { return o.days; })) - }); - } - fetchUserInfo = (uid) => { - return window.fetch('/api/v1/users/' + uid, { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return; - } - return response.json(); - }).then((response) => { - this.setState({ - _id: response['_id'], - uid: response['uid'], - display_name : response['display_name'], - title: response['title'], - department: response['department'], - company: response['company'], - mail: response['mail'], - ldap: response['ldap'], - icon: response['icon'] - }); - }); - } - handleChange = (event, key) => { - this.setState({ - [key]: event.target.value, - }); - }; - editUserInfo = () => { - let uid = this.state.uid; - let user = {}; - user['uid'] = uid; - user['display_name'] = this.state.display_name; - user['title'] = this.state.title; - user['department'] = this.state.department; - user['company'] = this.state.company; - user['mail'] = this.state.mail; - user['icon'] = this.state.icon; - - return window.fetch('/api/v1/users/' + uid, { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - user: user - }) - }).then((response) => { - return response; - }).then(data => { - this.setState({ - snackTime: true - }); - return data; - }).catch(error => { - return error; - }); - } - openNewWindow = (uri) => { - window.open(uri, '_self'); - } - scaleDownImage = () => { - let image = this.refs.userSubmittedAvatar; - let canvas = this.refs.canvas; - let ctx = canvas.getContext('2d'); - - canvas.height = 200; - canvas.width = 200; - - let sx = 0; - let sy = (image.naturalHeight - image.naturalWidth) / 2; - let swidth = image.naturalWidth; - let sheight = image.naturalWidth; - - if(image.naturalHeight < image.naturalWidth) { - sy = 0; - sx = (image.naturalWidth - image.naturalHeight) / 2; - swidth = image.naturalHeight; - sheight = image.naturalHeight; - } - - let x = 0; - let y = 0; - - ctx.drawImage(image, sx, sy, swidth, sheight, x, y, 200, 200); - - let dataURL = canvas.toDataURL('image/png'); - this.setState({ icon : dataURL}, ()=> { - this.editUserInfo(); - ctx.clearRect(0,0,canvas.width,canvas.height); - }); - } - handleChangeIcon = (event) => { - let accepted_files = event.target.files; - if (accepted_files.length > 0) { - let reader = new FileReader(); - reader.readAsDataURL(accepted_files[0]); - reader.onload = (e) => { - this.setState({ - baseURL : e.target.result - }); - }; - } - } - handleCrumbs =()=> { - this.setState({ - snackTime: false - }); - } - render() { - const { classes, theme } = this.props; - return ( -
- - - - - - - Account - - this.openNewWindow('/u/configure')} - > - - - - - - - - - - - - - - -
-
- - -
- this.handleChange(e, 'display_name')} - fullWidth={true} - /> - this.handleChange(e, 'mail')} - /> - this.handleChange(e, 'title')} - /> - this.handleChange(e, 'department')} - /> - this.handleChange(e, 'company')} - /> -
- -
-
- - - -
- ); - } -} - -const mapStateToProps = (state) => ({ - user: state.user -}); - -export default compose( - withStyles(styles, { withTheme: true }), - connect(mapStateToProps) -)(AccountPage); diff --git a/views/Account.render.react.js b/views/Account.render.react.js deleted file mode 100755 index 2044c114..00000000 --- a/views/Account.render.react.js +++ /dev/null @@ -1,10 +0,0 @@ -import React from 'react' -import {render} from 'react-dom' -import { Provider } from 'react-redux' - -import AccountPage from './Account.react' -import store from '../stores/store' - -const reduxStore = store() - -render(, document.getElementById('main')); diff --git a/views/Account.template.js b/views/Account.template.js deleted file mode 100755 index b951e806..00000000 --- a/views/Account.template.js +++ /dev/null @@ -1,28 +0,0 @@ -module.exports = (user, name, icon, mail, role) => { - var userState = { - "uid" : user, - "name" : name, - "icon" : icon, - "mail" : mail, - "role" : role - }; - return ` - - - - - - Account - DPdash - - - -
- - - - `; -}; diff --git a/views/Admin.react.js b/views/Admin.react.js deleted file mode 100644 index a7c7e61d..00000000 --- a/views/Admin.react.js +++ /dev/null @@ -1,992 +0,0 @@ -import React, {Component} from 'react'; -import {connect} from 'react-redux'; -import moment from 'moment'; -import 'whatwg-fetch'; -import update from 'immutability-helper'; -import { Column, Table } from 'react-virtualized'; -import * as _ from 'lodash'; -import ChipInput from 'material-ui-chip-input'; -import uuid from 'uuid'; -import classNames from 'classnames'; - -import Person from '@material-ui/icons/AccountCircle'; -import Settings from '@material-ui/icons/Settings'; -import Back from '@material-ui/icons/ChevronLeft'; -import SearchIcon from '@material-ui/icons/Search'; -import Clear from '@material-ui/icons/Clear'; - -import DialogActions from '@material-ui/core/DialogActions'; -import DialogTitle from '@material-ui/core/DialogTitle'; -import DialogContent from '@material-ui/core/DialogContent'; -import Dialog from '@material-ui/core/Dialog'; -import Button from '@material-ui/core/Button'; -import Subheader from '@material-ui/core/ListSubheader';; -import Divider from '@material-ui/core/Divider'; -import SelectField from '@material-ui/core/Select'; -import MenuItem from '@material-ui/core/MenuItem'; -import Checkbox from '@material-ui/core/Checkbox'; -import IconButton from '@material-ui/core/IconButton'; -import AppBar from '@material-ui/core/AppBar'; -import Toolbar from '@material-ui/core/Toolbar'; -import Typography from '@material-ui/core/Typography'; -import Avatar from '@material-ui/core/Avatar'; -import NoSsr from '@material-ui/core/NoSsr'; -import Select from 'react-select'; -import TextField from '@material-ui/core/TextField'; -import Paper from '@material-ui/core/Paper'; -import Chip from '@material-ui/core/Chip'; -import { emphasize } from '@material-ui/core/styles/colorManipulator'; - -const memberMenu = [ - {value: 0, level: 'admin', text: 'System Admins'}, - {value: 1, level: 'manager', text: 'Study Manager'}, - {value: 2, level: 'member', text: 'Member'} -]; - -import {compose} from 'redux'; -import { withStyles } from '@material-ui/core/styles'; -import DrawerComponent from './Drawer.react'; -import Drawer from '@material-ui/core/Drawer'; -const drawerWidth = 200; -import Hidden from '@material-ui/core/Hidden'; - -const styles = theme => ({ - root: { - flexGrow: 1, - height: '100vh', - zIndex: 1, - overflow: 'hidden', - position: 'relative', - display: 'flex', - width: '100%', - }, - appBar: { - position: 'absolute', - marginLeft: drawerWidth, - [theme.breakpoints.up('md')]: { - width: `calc(100% - ${drawerWidth}px)`, - }, - borderLeft: '1px solid rgba(0, 0, 0, 0.12)', - backgroundColor: 'white', - color: 'rgba(0, 0, 0, 0.54)' - }, - navIconHide: { - [theme.breakpoints.up('md')]: { - display: 'none', - }, - }, - drawerPaper: { - width: drawerWidth, - [theme.breakpoints.up('md')]: { - position: 'relative', - }, - borderRight: '0px' - }, - content: { - borderLeft: '1px solid rgba(0, 0, 0, 0.12)', - flexGrow: 1, - backgroundColor: '#fefefe', - padding: theme.spacing.unit * 3, - }, - input: { - display: 'flex', - padding: 0, - }, - valueContainer: { - display: 'flex', - flexWrap: 'wrap', - flex: 1, - alignItems: 'center', - }, - chip: { - margin: `${theme.spacing.unit / 2}px ${theme.spacing.unit / 4}px`, - }, - chipFocused: { - backgroundColor: emphasize( - theme.palette.type === 'light' ? theme.palette.grey[300] : theme.palette.grey[700], - 0.08, - ), - }, - noOptionsMessage: { - padding: `${theme.spacing.unit}px ${theme.spacing.unit * 2}px`, - }, - singleValue: { - fontSize: 16, - }, - placeholder: { - position: 'absolute', - left: 2, - fontSize: 16, - }, - paper: { - marginTop: theme.spacing.unit, - position: 'absolute', - width: '100%' - }, -}); - -function NoOptionsMessage(props) { - return ( - - {props.children} - - ); -} -function inputComponent({ inputRef, ...props }) { - return
; -} -function Control(props) { - return ( - - ); -} -function Option(props) { - return ( - - - {props.children} - - - ); -} -function Placeholder(props) { - return ( - - {props.children} - - ); -} -function SingleValue(props) { - return ( - - {props.children} - - ); -} -function ValueContainer(props) { - return
{props.children}
; -} -function MultiValue(props) { - return ( - { - props.removeProps.onClick(); - props.removeProps.onMouseDown(event); - }} - /> - ); -} -function Menu(props) { - return ( - - {props.children} - - ); -} -function DropdownIndicator(props) { - return ( - - ); -} -const indicatorSeparatorStyle = { - display: 'none' -}; - -const IndicatorSeparator = ({ innerProps }) => { - return ( - - ); -}; -var autocomplete = []; - -class AdminPage extends Component { - constructor(props) { - super(props); - this.state = { - tab: 0, - width: 0, - height: 0, - sortBy: '', - sortDirection: 'ASC', - marginHeight: 72, - marginWidth: 24, - studies: [], - editACL : [], - editLevel : '', - openAccess: false, - openReset: false, - resetUser: 0, - totalStudies: 0, - totalSubjects: 0, - totalDays : 0, - mobileOpen: false, - search: [], - search_array: [], - deleteUser: -1 - }; - } - componentDidUpdate() { - } - componentDidMount() { - this.setState({ - width: window.innerWidth - this.state.marginWidth, - height: window.innerHeight - this.state.marginHeight, - avatar : this.getAvatar() - }) - /* Resize listener register */ - window.addEventListener('resize', this.handleResize) - } - countSubjects = (acl) => { - var options = []; - for(var study = 0; study < acl.length; study++) { - Array.prototype.push.apply(options, acl[study].subjects); - } - this.setState({ - totalStudies: acl.length, - totalSubjects: options.length, - totalDays: Math.max.apply(Math, options.map(function(o) { return o.days; })) - }); - } - componentWillMount() { - this.fetchUsers(); - this.fetchStudies(); - this.fetchSubjects(); - } - componentWillUnmount() { - window.removeEventListener('resize', this.handleResize); - } - handleDrawerToggle = () => { - this.setState(state => ({ mobileOpen: !state.mobileOpen })); - }; - fetchSubjects = () => { - return window.fetch('/api/v1/studies', { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - let studies = response ? response : []; - window.fetch('/api/v1/subjects?q=' + JSON.stringify(studies), { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - this.countSubjects(response) - }); - }); - } - getAvatar = () => { - var icon = this.props.user.icon; - var username = this.props.user.name; - var uid = this.props.user.uid; - if(icon == '' || icon == undefined) { - if(username == '' || username == undefined) { - if(uid && uid.length > 0) { - return {uid[0]} - } else { - return - } - } else { - return {username[0]} - } - } else { - return - } - } - fetchStudies = () => { - return window.fetch('/api/v1/search/studies', { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - this.setState({ - studies: response.map(suggestion => ({ - value: suggestion, - label: suggestion - })) - }); - return; - }); - } - fetchUsers = () => { - return window.fetch('/api/v1/users', { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - this.setState({ - users: this.autocomplete(response) - }); - return; - }); - } - autocomplete = (users) => { - autocomplete = users.map(option => ({ - value: option.uid, - label: ((/\S/.test(option.display_name) && option.display_name != undefined) ? option.display_name : option.uid) - })); - return users; - } - handleTab = (value) => { - this.setState({ - tab: value, - }); - } - handleResize = (event) => { - this.setState({ - width: window.innerWidth - this.state.marginWidth, - height: window.innerHeight - this.state.marginHeight - }) - } - sort = ({sortBy, sortDirection}) => { - const sortedList = this.sortList({sortBy, sortDirection}) - this.setState({ - sortBy: sortBy, - sortDirection: sortDirection, - users: sortedList - }) - } - sortList = ({sortBy, sortDirection}) => { - let list = _.map(this.state.users, _.clone) - return _.orderBy(list, [sortBy], sortDirection.toLowerCase()) - } - rowClassName = ({index}) => { - if (index < 0) { - return 'headerRow' - } else { - return index % 2 === 0 ? 'evenRow' : 'oddRow' - } - } - resetPassword =(cellData)=> { - let index = _.findIndex(this.state.users, function(i) { return cellData['rowData'].uid == i.uid}); - this.openReset(index); - } - closeReset =()=> { - this.setState({ - openReset: false, - resetUser: 0 - }); - } - deleteUser = (cellData) => { - let index = _.findIndex(this.state.users, function(i) { return cellData['rowData'].uid == i.uid}); - this.setState({ - deleteUser: index, - openDelete : true - }); - } - confirmDelete =() => { - let index = this.state.deleteUser; - return window.fetch('/api/v1/users/' + this.state.users[index].uid + '/delete', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - this.closeDelete(); - location.reload(); - }); - } - closeDelete = () => { - this.setState({ - openDelete: false, - deleteUser: -1 - }); - } - blockUser = (cellData) => { - let index = _.findIndex(this.state.users, function(i) { return cellData['rowData'].uid == i.uid}); - let blocked = this.state.users[index]['blocked'] ? this.state.users[index]['blocked'] : false; - let block = !blocked; - let uid = this.state.users[index]['uid']; - this.setState({ - users: update(this.state.users, { - [index] : { - blocked : { - $set : block - } - } - }) - }); - this.updateBlockedUser(uid, block); - } - updateBlockedUser =(uid, block)=> { - return window.fetch('/api/v1/users/' + uid + '/blocked', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - blocked : block, - }) - }).then((response) => { - return; - }); - } - openReset =(index) => { - let uid = this.state.users[index]['uid']; - let reset = this.state.users[index]['force_reset_pw'] ? this.state.users[index]['force_reset_pw'] : false; - let reset_key = uuid.v4(); - if(reset == true) { - reset_key = ''; - this.setState({ - users: update(this.state.users, { - [index] : { - force_reset_pw : { - $set : !reset - }, - reset_key : { - $set : reset_key - } - } - }) - }); - } else { - this.setState({ - users: update(this.state.users, { - [index] : { - force_reset_pw : { - $set : !reset - }, - reset_key : { - $set : reset_key - } - } - }), - openReset: true, - resetUser : index - }); - } - - this.updateReset(uid, !reset, reset_key); - } - updateReset = (uid, force_reset, reset_key) => { - return window.fetch('/api/v1/users/' + uid + '/resetpw', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - force_reset_pw : force_reset, - reset_key: reset_key - }) - }).then((response) => { - return; - }); - } - openAccess = (cellData) => { - let index = _.findIndex(this.state.users, function(i) { return cellData['rowData'].uid == i.uid}); - let access = ('access' in this.state.users[index]) ? this.state.users[index]['access'].map(suggestion => ({ - value: suggestion, - label: suggestion - })) : []; - this.setState({ - editACL: access, - editLevel: this.findEditLevel(this.state.users[index]['role']), - editUser: index, - openAccess: true - }); - } - findEditLevel = (role) => { - for (let key = 0; key < memberMenu.length; key++) { - if(memberMenu[key].level === role) { - return key - } - } - return 0 - } - closeAccess = () => { - let role = memberMenu[this.state.editLevel]['level']; - let uid = this.state.users[this.state.editUser]['uid']; - let access = this.state.editACL; - this.updateRole(uid, role); - - this.setState({ - editACL: [], - editUser: -1, - openAccess: false - }); - } - handleAddChip = (chip) => { - this.setState({ - editACL: update(this.state.editACL, { - $push: [chip] - }) - }); - } - handleDeleteChip = (chip, index) => { - this.setState({ - editACL: update(this.state.editACL, { - $splice: [[index, 1]] - }) - }); - } - modifyACL = () => { - let uid = this.state.users[this.state.editUser]['uid']; - let role = memberMenu[this.state.editLevel]['level']; - let access = this.state.editACL.map(f => f.value); - - this.setState({ - users: update(this.state.users, { - [this.state.editUser] : { - access: { - $set : access - }, - role : { - $set : role - } - } - }) - }); - return window.fetch('/api/v1/users/' + uid + '/studies', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - acl : access, - }) - }).then((response) => { - this.closeAccess(); - }); - } - handleLevelChange =(event)=> { - this.setState({ - editLevel: event.target.value - }); - } - openNewWindow = (uri) => { - window.open(uri, '_self'); - } - updateRole = (uid, role) => { - return window.fetch('/api/v1/users/' + uid + '/role', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - role : role, - }) - }).then((response) => { - return; - }); - } - generatetMenu = (options) => { - return options.map((option, index) => ( - {option.text} - )); - } - handleSearch = value => { - this.setState({ - search : value, - search_array: value.map(option=> option.value) - }); - }; - handleChange = name => value => { - this.setState({ - [name]: value, - }); - }; - render() { - const actions = [ - - - - - { this.state.users && this.state.deleteUser != -1 ? - - - Delete user {this.state.users[this.state.deleteUser].display_name} (uid: {this.state.users[this.state.deleteUser].uid})? - - - - - - : null} - { this.state.users ? - - - Reset user password - - - - {this.state.users[this.state.resetUser] ? 'Reset key for user: ' + this.state.users[this.state.resetUser]['uid'] : ''} - -

{this.state.users[this.state.resetUser]['reset_key'] ? this.state.users[this.state.resetUser]['reset_key'] : ''}

- - : null} -
- ); - } -} - -const mapStateToProps = (state) => ({ - user: state.user -}) - -export default compose( - withStyles(styles, { withTheme: true }), - connect(mapStateToProps) -)(AdminPage); diff --git a/views/Admin.render.react.js b/views/Admin.render.react.js deleted file mode 100755 index 9b3850c1..00000000 --- a/views/Admin.render.react.js +++ /dev/null @@ -1,10 +0,0 @@ -import React from 'react'; -import {render} from 'react-dom'; -import { Provider } from 'react-redux'; - -import AdminPage from './Admin.react'; -import store from '../stores/store'; - -const reduxStore = store(); - -render(, document.getElementById('main')); diff --git a/views/Admin.template.js b/views/Admin.template.js deleted file mode 100644 index 7de92c4a..00000000 --- a/views/Admin.template.js +++ /dev/null @@ -1,29 +0,0 @@ -module.exports = (user,name,role,icon) => { - var userState = { - "uid" : user, - "name" : name, - "role" : role, - "icon" : icon - }; - return ` - - - - - - - DPdash - - - -
- - - - `; -}; diff --git a/views/App.css b/views/App.css new file mode 100644 index 00000000..761494b0 --- /dev/null +++ b/views/App.css @@ -0,0 +1,15 @@ +:root { + --primary-light: #addbff; + --primary-main: #2196f3; + --text-secondary: #054da7; + --dark-transparent-grey: #616161e6; + --underline-grey: #0000001f; +} + +.Link--unstyled { + text-decoration: none; +} + +.Link--unstyled { + text-decoration: none; +} diff --git a/views/App.jsx b/views/App.jsx new file mode 100644 index 00000000..996a26b8 --- /dev/null +++ b/views/App.jsx @@ -0,0 +1,50 @@ +import React, { useState } from 'react' + +import { + CssBaseline, + StyledEngineProvider, + createTheme, + ThemeProvider, + Snackbar, +} from '@mui/material' +import { LocalizationProvider } from '@mui/x-date-pickers' +import { AdapterDayjs } from '@mui/x-date-pickers/AdapterDayjs' + +import { AuthContext, NotificationContext } from './contexts' +import Router from './routes' +import { NOTIFICATION_DEFAULT, THEME } from '../constants' + +import './App.css' + +const theme = createTheme(THEME) + +const App = () => { + const [notification, setNotification] = useState(NOTIFICATION_DEFAULT) + const [user, setUser] = useState(null) + + const handleNotificationClose = () => setNotification(NOTIFICATION_DEFAULT) + + return ( + + + + + + + + + + + + + + ) +} + +export default App diff --git a/views/Config.react.js b/views/Config.react.js deleted file mode 100644 index c98efc81..00000000 --- a/views/Config.react.js +++ /dev/null @@ -1,1000 +0,0 @@ -import React, {Component} from 'react'; -import {connect} from 'react-redux'; -import moment from 'moment'; -import 'whatwg-fetch'; -import update from 'immutability-helper'; - -import Person from '@material-ui/icons/Person'; -import ColorLens from '@material-ui/icons/ColorLens'; -import Edit from '@material-ui/icons/Edit'; -import Clear from '@material-ui/icons/Clear'; -import Share from '@material-ui/icons/Share'; -import FullView from '@material-ui/icons/AspectRatio'; -import Add from '@material-ui/icons/Add'; -import Copy from '@material-ui/icons/FileCopy'; -import ContentAdd from '@material-ui/icons/Add'; -import AttachFile from '@material-ui/icons/AttachFile'; - -import Card from '@material-ui/core/Card'; -import CardActions from '@material-ui/core/CardActions'; -import CardHeader from '@material-ui/core/CardHeader'; -import CardMedia from '@material-ui/core/CardMedia'; -import CardContent from '@material-ui/core/CardContent'; - -import FormControlLabel from '@material-ui/core/FormControlLabel'; -import Button from '@material-ui/core/Button'; -import GridList from '@material-ui/core/GridList'; -import Avatar from '@material-ui/core/Avatar'; -import IconButton from '@material-ui/core/IconButton'; -import Dialog from '@material-ui/core/Dialog'; -import DialogActions from '@material-ui/core/DialogActions'; -import DialogContent from '@material-ui/core/DialogContent'; -import DialogTitle from '@material-ui/core/DialogTitle'; -import ChipInput from 'material-ui-chip-input'; -import Switch from '@material-ui/core/Switch'; -import Divider from '@material-ui/core/Divider'; -import AppBar from '@material-ui/core/AppBar'; -import Toolbar from '@material-ui/core/Toolbar'; -import Snackbar from '@material-ui/core/Snackbar'; -import ButtonBase from '@material-ui/core/ButtonBase'; -import Tooltip from '@material-ui/core/Tooltip'; - -import {compose} from 'redux'; -import { withStyles } from '@material-ui/core/styles'; -import DrawerComponent from './Drawer.react'; -import Drawer from '@material-ui/core/Drawer'; -const drawerWidth = 200; -import Hidden from '@material-ui/core/Hidden'; - -import NoSsr from '@material-ui/core/NoSsr'; -import TextField from '@material-ui/core/TextField'; -import Paper from '@material-ui/core/Paper'; -import Chip from '@material-ui/core/Chip'; -import MenuList from '@material-ui/core/MenuList'; -import MenuItem from '@material-ui/core/MenuItem'; -import CancelIcon from '@material-ui/icons/Cancel'; -import { emphasize } from '@material-ui/core/styles/colorManipulator'; -import Select from 'react-select'; -import classNames from 'classnames'; -import Typography from '@material-ui/core/Typography'; - -const styles = theme => ({ - root: { - flexGrow: 1, - height: '100vh', - zIndex: 1, - overflow: 'hidden', - position: 'relative', - display: 'flex', - width: '100%', - backgroundColor: '#fefefe', - }, - appBar: { - position: 'absolute', - marginLeft: drawerWidth, - [theme.breakpoints.up('md')]: { - width: `calc(100% - ${drawerWidth}px)`, - }, - borderLeft: '1px solid rgba(0, 0, 0, 0.12)', - backgroundColor: 'white', - color: 'rgba(0, 0, 0, 0.54)' - }, - navIconHide: { - [theme.breakpoints.up('md')]: { - display: 'none', - }, - }, - drawerPaper: { - width: drawerWidth, - [theme.breakpoints.up('md')]: { - position: 'relative', - }, - borderRight: '0px' - }, - content: { - flexGrow: 1, - borderLeft: '1px solid rgba(0, 0, 0, 0.12)', - backgroundColor: '#fefefe', - padding: theme.spacing.unit * 3, - }, - input: { - display: 'flex', - padding: 0, - }, - valueContainer: { - display: 'flex', - flexWrap: 'wrap', - flex: 1, - alignItems: 'center', - }, - chip: { - margin: `${theme.spacing.unit / 2}px ${theme.spacing.unit / 4}px`, - }, - chipFocused: { - backgroundColor: emphasize( - theme.palette.type === 'light' ? theme.palette.grey[300] : theme.palette.grey[700], - 0.08, - ), - }, - noOptionsMessage: { - padding: `${theme.spacing.unit}px ${theme.spacing.unit * 2}px`, - }, - singleValue: { - fontSize: 16, - }, - placeholder: { - position: 'absolute', - left: 2, - fontSize: 16, - }, - paper: { - position: 'relative', - marginTop: theme.spacing.unit, - left: 0, - right: 0, - zIndex: 1 - }, - divider: { - height: theme.spacing.unit * 2, - }, -}); - -function NoOptionsMessage(props) { - return ( - - {props.children} - - ); -} - -function inputComponent({ inputRef, ...props }) { - return
; -} - -function Control(props) { - return ( - - ); -} - -function Option(props) { - return ( - - {props.children} - - ); -} - -function Placeholder(props) { - return ( - - {props.children} - - ); -} - -function SingleValue(props) { - return ( - - {props.children} - - ); -} - -function ValueContainer(props) { - return
{props.children}
; -} - -function MultiValue(props) { - return ( - } - /> - ); -} - -function Menu(props) { - return ( - - - {props.children} - - - ); -} - -const components = { - Control, - Menu, - MultiValue, - NoOptionsMessage, - Option, - Placeholder, - SingleValue, - ValueContainer, -}; - -class ConfigPage extends Component { - constructor(props) { - super(props); - this.state = { - user: {}, - preferences:{}, - configurations: [], - gridCols : 1, - gridWidth : 350, - searchUsers: false, - friends: [], - shared: [], - snackTime: false, - uploadSnack: false, - selectedConfig: {}, - configOwner: '', - totalStudies: 0, - totalSubjects: 0, - totalDays : 0, - mobileOpen: false - }; - } - handleDrawerToggle = () => { - this.setState(state => ({ mobileOpen: !state.mobileOpen })); - }; - componentDidUpdate() { - } - componentWillMount() { - this.fetchConfigurations(this.props.user.uid); - this.fetchPreferences(this.props.user.uid); - this.fetchUsers(); - this.fetchSubjects(); - } - fetchSubjects = () => { - return window.fetch('/api/v1/studies', { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - let studies = response ? response : []; - window.fetch('/api/v1/subjects?q=' + JSON.stringify(studies), { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - this.autocomplete(response) - }); - }); - } - autocomplete = (acl) => { - var options = []; - for(var study = 0; study < acl.length; study++) { - Array.prototype.push.apply(options, acl[study].subjects); - } - this.setState({ - totalStudies: acl.length, - totalSubjects: options.length, - totalDays: Math.max.apply(Math, options.map(function(o) { return o.days; })) - }); - } - componentDidMount() { - if(this.props.user.message.length > 0) { - this.setState({ - uploadSnack: true, - avatar : this.getAvatar() - }); - } else { - this.setState({ - avatar : this.getAvatar() - }); - } - /* Initial Sizing */ - this.handleResize(true); - /* Resize listener register */ - window.addEventListener('resize', this.handleResize); - } - componentWillUnmount() { - window.removeEventListener('resize', this.handleResize); - } - getAvatar = () => { - var icon = this.props.user.icon; - var username = this.props.user.name; - var uid = this.props.user.uid; - if(icon == '' || icon == undefined) { - if(username == '' || username == undefined) { - if(uid && uid.length > 0) { - return {uid[0]} - } else { - return - } - } else { - return {username[0]} - } - } else { - return - } - } - handleResize = (event) => { - if (window.innerWidth >= 768) { - let gridCols = Math.floor(window.innerWidth / this.state.gridWidth); - this.setState({ - gridCols: gridCols - }); - } else { - this.setState({ - gridCols: 1 - }); - } - } - fetchUsers = () => { - return window.fetch('/api/v1/search/users', { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return; - } - return response.json(); - }).then((response) => { - this.setState({ - friends: response.map(friend => ({ - value: friend, - label: friend - })) - }); - }); - } - babyProofPreferences = (preferences) => { - let preference = {}; - preference['star'] = 'star' in preferences ? preferences['star'] : {}; - preference['sort'] = 'sort' in preferences ? preferences['sort'] : 0; - preference['config'] = 'config' in preferences ? preferences['config'] : ''; - preference['complete'] = 'complete' in preferences ? preferences['complete'] : {}; - return preference; - } - updateUserPreferences = (index, type) => { - let uid = this.props.user.uid; - let preference = {}; - if (type == 'index') { - if(this.state.configurations.length > 0 && this.state.configurations[index]) { - preference['config'] = this.state.configurations[index]['_id']; - } - } else { - preference['config'] = index; - } - preference['complete'] = 'complete' in this.state.preferences ? this.state.preferences['complete'] : {}; - preference['star'] = 'star' in this.state.preferences ? this.state.preferences['star'] : {}; - preference['sort'] = 'sort' in this.state.preferences ? this.state.preferences['sort'] : 0; - preference = this.babyProofPreferences(preference); - - return window.fetch('/api/v1/users/' + uid + '/preferences', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - preferences: preference - }) - }).then((response) => { - if (type == 'index') { - this.setState({ - preferences: preference, - snackTime: true - }); - } else { - this.setState({ - preferences: preference - }); - } - }); - } - fetchPreferences = (uid) => { - return window.fetch('/api/v1/users/' + uid + '/preferences', { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return; - } - return response.json(); - }).then((response) => { - this.setState({ - preferences: this.babyProofPreferences(response) - }); - }); - } - fetchConfigItem =(uid, _id)=> { - return window.fetch('/api/v1/users/' + uid + '/configs/' + _id , { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return; - } - return response.json(); - }).then((response) => { - }); - } - fetchConfigurations = (uid) => { - return window.fetch('/api/v1/users/' + uid + '/configs', { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return; - } - return response.json(); - }).then((response) => { - this.setState({ - configurations: response - }); - }); - } - updateConfigurations = (configID, ownsConfig) => { - if(ownsConfig) { - window.fetch('/api/v1/users/' + this.props.user.uid + '/configs', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - remove : configID - }) - }).then((response) => { - return; - }); - } else { - window.fetch('/api/v1/users/' + this.props.user.uid + '/configs', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - disable : configID - }) - }).then((response) => { - return; - }); - } - } - handleCrumbs =()=> { - this.setState({ - snackTime: false, - uploadSnack : false - }); - } - removeConfig = (configs, index, configID, ownsConfig) => { - this.updateConfigurations(configID, ownsConfig); - this.setState({ - configurations: update(configs, { - $splice: [[index, 1]] - }), - snackTime: true - }); - if(index == this.state.preferences['config']) { - this.updateUserPreferences(0, 'index'); - } - } - openSearchUsers = (index, configID, shared, owner) => { - this.setState({ - searchUsers: true, - selectedConfig: { - _id: configID, - index: index - }, - shared: shared.map(friend => ({ - label: friend, - value: friend - })), - configOwner: owner - }); - } - closeSearchUsers = () => { - this.setState({ - searchUsers: false, - selectedConfig: { - _id: '', - index: -1 - }, - shared: [], - configOwner: '' - }); - } - copyConfig = (config) => { - let newConfig = {}; - newConfig['owner'] = this.props.user.uid; - newConfig['readers'] = [this.props.user.uid]; - newConfig['created'] = (new Date()).toUTCString(); - newConfig['type'] = config['type']; - newConfig['name'] = config['name']; - newConfig['config'] = config['config']; - - return window.fetch('/api/v1/users/' + this.props.user.uid + '/configs', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - add : newConfig - }) - }).then((response) => { - if (response.status == 201) { - this.fetchConfigurations(this.props.user.uid); - } - }); - } - openNewWindow = (uri) => { - window.open(uri, '_self'); - } - generateCards = (configs, preference) => { - let cards = []; - if(configs && configs.length > 0) { - for (let item in configs) { - let ownsConfig = this.props.user.uid === configs[item]['owner'] ? true : false; - let showTime = 'modified' in configs[item] ? configs[item]['modified'] : configs[item]['created']; - let localTime = moment.utc(showTime).local().format(); - let updated = moment(localTime).calendar(); - cards.push( - - this.removeConfig(configs,item,configs[item]['_id'],ownsConfig)} - > - - - } - /> - -
- - {configs[item]['name']} - - - {configs[item]['type']} - -
- -
-
- { ownsConfig ? this.openNewWindow('/u/configure?s=edit&id=' + configs[item]['_id'])} - iconStyle={{color: 'rgba(0, 0, 0, 0.54)'}} - tooltipPosition='top-center' - tooltip="Edit"> : this.openNewWindow('/u/configure?s=view&id=' + configs[item]['_id'])} - iconStyle={{color: 'rgba(0, 0, 0, 0.54)'}} - tooltipPosition='top-center' - tooltip="View"> - } - { ownsConfig ? this.openSearchUsers(item, configs[item]['_id'], configs[item]['readers'], configs[item]['owner'])} - > : this.copyConfig(configs[item])} - > - - - } -
- this.changeDefaultConfig(e, isInputChecked, item)} - /> - } - label='Default' - /> -
- - - ); - } - } - return cards; - } - shareWithUsers = () => { - return window.fetch('/api/v1/users/' + this.props.user.uid + '/configs', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - share : this.state.selectedConfig['_id'], - shared: this.state.shared.map(o => { return o.value }) - }) - }).then((response) => { - if (response.status == 201) { - this.setState({ - configurations: update(this.state.configurations, { - [this.state.selectedConfig['index']]: { - ['readers'] : { - $set : this.state.shared.map(o => { return o.value }) - } - } - }) - }); - } - this.closeSearchUsers(); - }); - } - handleChange = name => value => { - let uid = this.props.user.uid; - let names = value.map(o=> {return o.value}); - if(names.indexOf(uid) === -1) { - console.log("Can't delete the owner."); - return; - } - this.setState({ - [name]: value, - }); - } - handleChangeFile = (event) => { - this.refs.config_file.submit(); - } - changeDefaultConfig = (e, checked, index) => { - this.updateUserPreferences(index, 'index'); - } - render() { - const { classes, theme } = this.props; - const actions = [ - , - , - ]; - const selectStyles = { - input: base => ({ - ...base, - color: theme.palette.text.primary, - '& input': { - font: 'inherit', - }, - }), - }; - return ( -
- - - - - - - Configuration - - this.openNewWindow('/u')} - > - - - - - - - - - - - - - - -
- - {this.generateCards(this.state.configurations, this.state.preferences)} - -
-
- - -
- -
- - - - Share your configuration - - - - this.handlePaint(event, item)} - > - {this.state.colorblock} - -
-
- this.handleRangeChange(event, item, 'min')} - /> - this.handleRangeChange(event, item, 'max')} - /> -
- } - icon={} - onChange={(event, isInputChecked) => this.makeVisible(event, isInputChecked, item)} - checked={config[item]['text']} - style={{ - width: 'auto', - paddingTop: '4px', - paddingLeft: '4px', - paddingRight: '4px', - paddingBottom: '12px' - }} - /> - } - label='Display Value' - /> - - - - this.copyConfig(item)} - > - - - this.removeConfig(item)} - > - - - - - ); - } - } - return cards; - } - handlePaint = (event, row) => { - let value = event.target.value - this.setState({ - themes: update(this.state.themes, { - [row] : { - $set : value - } - }), - config: update(this.state.config, { - [this.state.configKey]: { - [row] : { - ['color'] : { - $set : this.state.colorarray[value] - } - } - } - }) - }); - } - copyConfig = (index) => { - let configurationItem = this.state.config[this.state.configKey][index]; - let newConfigIndex = this.state.config[this.state.configKey].length; - this.setState({ - config: update(this.state.config, { - [this.state.configKey] : { - $push: [configurationItem] - } - }), - themes: update(this.state.themes, { - [newConfigIndex] : { - $set: this.state.themes[index] - } - }) - }); - } - addConfiguration =()=> { - let newConfigIndex = this.state.config[this.state.configKey].length; - let configurationItem = { - _id : newConfigIndex, - analysis: '', - category: '', - color: this.state.colorarray[0], - label: '', - range: [0,1], - text: false, - variable: '' - }; - - this.setState({ - config: update(this.state.config, { - [this.state.configKey] : { - $push: [configurationItem] - } - }), - themes: update(this.state.themes, { - [newConfigIndex] : { - $set: 0 - } - }) - }); - } - saveConfiguration = () => { - let newReaders = this.state.readers.map(o => { return o.value }); - let newConfig = { - _id : this.state._id, - config: this.state.config, - name: this.state.name, - type: this.state.type, - readers : newReaders, - modified: (new Date()).toUTCString() - }; - return window.fetch('/api/v1/users/' + this.state.user.uid + '/configs', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - edit: newConfig - }) - }).then((response) => { - if (response.status !== 201) { - return; - } - return response.json(); - }).then((response) => { - this.setState({ - snackTime: true - }); - }); - } - insertConfiguration = () => { - let newReaders = this.state.readers.map(o => { return o.value }); - let newConfig = { - owner: this.state.owner, - config: this.state.config, - name: this.state.name, - type: this.state.type, - readers : newReaders, - created: this.state.created - }; - return window.fetch('/api/v1/users/' + this.state.user.uid + '/configs', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - redirect: 'follow', - credentials: 'same-origin', - body: JSON.stringify({ - add: newConfig - }) - }).then((response) => { - if (response.status !== 201) { - return; - } - return response.json(); - }).then((response) => { - this.setState({ - snackTime: true - }); - if('uri' in response) { - window.location.replace(response.uri); - } - }); - } - handleChange = name => value => { - let uid = this.props.user.uid; - let names = value.map(o=> {return o.value}); - if(names.indexOf(uid) === -1) { - console.log("Can't delete the owner."); - return; - } - this.setState({ - [name]: value, - }); - } - handleCrumbs =()=> { - this.setState({ - snackTime: false - }); - } - render() { - const { classes, theme } = this.props; - const selectStyles = { - input: base => ({ - ...base, - color: theme.palette.text.primary, - '& input': { - font: 'inherit', - }, - }), - }; - return ( -
- - - - - - - - {this.generateCards(this.state.config)} - - { !this.state.viewOnly ? -
- -
- { this.props.user.goal == 'add' ? - - : } -
- : null } - -
- ); - } -} - -const mapStateToProps = (state) => ({ - user: state.user -}); - -export default compose( - withStyles(styles, { withTheme: true }), - connect(mapStateToProps) -)(EditConfig); diff --git a/views/EditConfig.render.react.js b/views/EditConfig.render.react.js deleted file mode 100755 index 7af6adbc..00000000 --- a/views/EditConfig.render.react.js +++ /dev/null @@ -1,10 +0,0 @@ -import React from 'react' -import {render} from 'react-dom' -import { Provider } from 'react-redux' - -import EditConfig from './EditConfig.react' -import store from '../stores/store' - -const reduxStore = store() - -render(, document.getElementById('main')); diff --git a/views/EditConfig.template.js b/views/EditConfig.template.js deleted file mode 100755 index dfb19709..00000000 --- a/views/EditConfig.template.js +++ /dev/null @@ -1,25 +0,0 @@ -module.exports = (user, goal, id) => { - var userState = { - "uid" : user, - "goal" : goal, - "config" : id - }; - return ` - - - - - Edit Configuration - DPdash - - - -
- - - - `; -}; diff --git a/views/Graph.react.js b/views/Graph.react.js deleted file mode 100755 index 44448ac2..00000000 --- a/views/Graph.react.js +++ /dev/null @@ -1,634 +0,0 @@ -import React, {Component} from 'react' -import GraphFactory from './GraphFactory.react' -import { connect } from 'react-redux' -import io from 'socket.io-client' -import 'whatwg-fetch' -import update from 'immutability-helper' -import FileSaver from 'file-saver' - -import Button from '@material-ui/core/Button'; -import List from '@material-ui/core/List'; -import ListItem from '@material-ui/core/ListItem'; -import * as _ from 'lodash'; - -import AppBar from '@material-ui/core/AppBar'; -import Toolbar from '@material-ui/core/Toolbar'; -import IconButton from '@material-ui/core/IconButton'; -import Typography from '@material-ui/core/Typography'; - -import Avatar from '@material-ui/core/Avatar'; -import {compose} from 'redux'; -import { withStyles } from '@material-ui/core/styles'; -import DrawerComponent from './Drawer.react'; -import Drawer from '@material-ui/core/Drawer'; -const drawerWidth = 200; -import Hidden from '@material-ui/core/Hidden'; - -import SaveIcon from '@material-ui/icons/Save'; -import CircularProgress from '@material-ui/core/CircularProgress'; -import green from '@material-ui/core/colors/green'; -import CheckIcon from '@material-ui/icons/Check'; -import RefreshIcon from '@material-ui/icons/Refresh'; -import Tooltip from '@material-ui/core/Tooltip'; -import classNames from 'classnames'; - -import DialogActions from '@material-ui/core/DialogActions'; -import DialogContent from '@material-ui/core/DialogContent'; -import Dialog from '@material-ui/core/Dialog'; -import Functions from '@material-ui/icons/Functions'; - -import Table from '@material-ui/core/Table'; -import TableBody from '@material-ui/core/TableBody'; -import TableCell from '@material-ui/core/TableCell'; -import TableHead from '@material-ui/core/TableHead'; -import TableRow from '@material-ui/core/TableRow'; - -const socketAddress = 'https://' + window.location.hostname + '/dashboard' -const socket = io(socketAddress, { - requestTimeout: 1250, -// timeout: 1600, - randomizationFactor: 0, - reconnectionDelay: 0, - autoConnect: false -}) - -const styles = theme => ({ - root: { - flexGrow: 1, - height: '100vh', - zIndex: 1, - overflow: 'hidden', - position: 'relative', - display: 'flex', - width: '100%', - }, - appBar: { - position: 'absolute', - marginLeft: drawerWidth, - [theme.breakpoints.up('md')]: { - width: `calc(100% - 0px)`, - }, - borderLeft: '1px solid rgba(0, 0, 0, 0.12)', - backgroundColor: 'white', - color: 'rgba(0, 0, 0, 0.54)' - }, - navIconHide: { - }, - drawerPaper: { - width: drawerWidth, - [theme.breakpoints.up('md')]: { - position: 'relative', - }, - borderRight: '0px' - }, - content: { - borderLeft: '1px solid rgba(0, 0, 0, 0.12)', - flexGrow: 1, - backgroundColor: '#fefefe', - padding: theme.spacing.unit * 3, - }, - wrapper: { - margin: theme.spacing.unit, - position: 'relative', - }, - buttonSuccess: { - backgroundColor: green[500], - '&:hover': { - backgroundColor: green[700], - }, - }, - fabProgress: { - color: green[500], - position: 'absolute', - bottom: -6, - left: -6, - zIndex: 1, - }, - buttonProgress: { - color: green[500], - position: 'absolute', - top: '50%', - left: '50%', - marginTop: -12, - marginLeft: -12, - }, -}); - -const CustomTableCell = withStyles(theme => ({ - head: { - backgroundColor: theme.palette.common.black, - color: theme.palette.common.white, - }, - body: { - fontSize: 14, - }, -}))(TableCell); - -class Graph extends Component { - constructor(props) { - super(props); - this.state = { - subject: {}, - graph: {}, - user: {}, - searchList: {}, - svgLink : {}, - startFromTheLastDay: false, - graphWidth: 0, - graphHeight: 0, - startDay: 1, - lastDay: null, - maxDay: 1, - socketIOSubjectRoom: null, - socketIOUserRoom: null, - taskId: '', - metadata: {}, - configurations: { - colormap: [] - }, - data: { - matrix: {} - }, - mobileOpen: false, - icon: '', - totalSubjects: 0, - totalStudies: 0, - totalDays: 0, - loading: false, - success: false, - cardSize: 50, - openStat: false - } - } - fetchMetadata = (study, subject, day) => { - return fetch('/api/v1/studies/' + study + '/subjects/' + subject + '/deepdive/' + day, { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 201) { - return - } - return response.json() - }).then((response) => { - this.setState({ - data: response - }) - }) - } - filterList = (event) => { - let updatedList = this.state.searchList - if(event.target.value !== "") { - updatedList = this.props.user.acl.filter(function(item) { - return (item['subjects'].toLowerCase().search(event.target.value.toLowerCase()) !== -1) - }) - } else { - //reset the acl - updatedList = this.props.user.acl - } - - this.setState({searchList: updatedList}) - } - - generateListItem(acl) { - let listItem = [] - for (let i in acl) { - let link = '/dashboard/' + acl[i]['study'] + '/' + acl[i]['subjects'] - listItem.push( - - ) - } - return listItem - } - downloadPng = (event) => { - let SID = this.props.subject.sid - this.refs.canvas.toBlob((blob) => { - FileSaver.saveAs(blob, SID + '.png') - }) - } - handleResize = (event) => { - this.setState({ - graphWidth: window.innerWidth, - graphHeight: window.innerHeight - 30 - }) - } - getAvatar = () => { - var icon = this.props.user.icon; - var username = this.props.user.name; - var uid = this.props.user.uid; - if(icon == '' || icon == undefined) { - if(username == '' || username == undefined) { - if(uid && uid.length > 0) { - return {uid[0]} - } else { - return - } - } else { - return {username[0]} - } - } else { - return - } - } - resync = (event) => { - window.fetch(this.state.socketIOSubjectRoom, { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if(response.status !== 201) { - return - } - return response.json() - }).then((response) => { - this.setState({taskId: response.correlationId, loading: true, success: false}) - }) - } - fetchSubjects = () => { - return window.fetch('/api/v1/studies', { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - let studies = response ? response : []; - window.fetch('/api/v1/subjects?q=' + JSON.stringify(studies), { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - this.countSubjects(response) - }); - }); - } - closeStat = () => { - this.setState({ - openStat: false, - }); - } - openStat = () => { - this.setState({ - openStat: true, - }); - } - componentDidUpdate() { - } - componentWillMount() { - this.fetchSubjects(); - //this.fetchConfigurations() - //this.fetchMetadata(this.props.subject.project, this.props.subject.sid) - //this.getData(this.props.subject.project, this.props.subject.sid, this.props.graph.matrixConfig) - let maxDay = 1 - for (let dataIndex = 0; dataIndex < this.props.graph.matrixData.length; dataIndex++) { - let maxObj = _.maxBy(this.props.graph.matrixData[dataIndex]['data'], function(o) { return o.day }) - if (maxObj == undefined) { - continue - } - let day = maxObj['day'] - if (day > maxDay) { - maxDay = day - } - } - - this.setState({ - maxDay: maxDay, - subject : this.props.subject, - user : this.props.user, - iconBase64: this.props.user.icon, - searchList: this.props.user.acl, - socketIOSubjectRoom : '/resync/' + this.props.subject.project + '/' + this.props.subject.sid, - socketIOUserRoom : this.props.user.uid - }) - this.setState({configurations : this.props.user.configs }) - if (!HTMLCanvasElement.prototype.toBlob) { - Object.defineProperty(HTMLCanvasElement.prototype, 'toBlob', { - value: function (callback, type, quality) { - var binStr = atob( this.toDataURL(type, quality).split(',')[1] ), - len = binStr.length, - arr = new Uint8Array(len) - - for (var i = 0; i < len; i++ ) { - arr[i] = binStr.charCodeAt(i) - } - callback( new Blob( [arr], {type: type || 'image/png'} ) ) - } - }) - } - } - countSubjects = (acl) => { - var options = []; - for(var study = 0; study < acl.length; study++) { - Array.prototype.push.apply(options, acl[study].subjects); - } - this.setState({ - totalStudies: acl.length, - totalSubjects: options.length, - totalDays: Math.max.apply(Math, options.map(function(o) { return o.days; })) - }); - } - handleDrawerToggle = () => { - this.setState(state => ({ mobileOpen: !state.mobileOpen })); - } - generateStatItem(data) { - let tableItem = [] - for (let i in data) { - let dataItem = data[i] - let validData = _.filter(dataItem['data'], _.conforms({[dataItem['variable']] : function(n) { return _.isNumber(n) }})) - let missingDataPercentage = 100 - (validData.length * 100 / this.state.maxDay) - tableItem.push( - - {dataItem['label']} - {(dataItem['stat'].length > 0 && !isNaN(parseFloat(dataItem['stat'][0].min) && isFinite(dataItem['stat'][0].min)) ? dataItem['stat'][0].min.toFixed(2) : 'N/A' )} - {(dataItem['stat'].length > 0 && !isNaN(parseFloat(dataItem['stat'][0].max) && isFinite(dataItem['stat'][0].max)) ? dataItem['stat'][0].max.toFixed(2) : 'N/A' )} - {(dataItem['stat'].length > 0 && !isNaN(parseFloat(dataItem['stat'][0].mean) && isFinite(dataItem['stat'][0].mean)) ? dataItem['stat'][0].mean.toFixed(2) : 'N/A' )} - { missingDataPercentage.toFixed(2) + ' (' + validData.length + '/' + this.state.maxDay + ')' } - - ) - } - return tableItem - } - componentDidMount() { - socket.open() - this.setState({ - avatar : this.getAvatar() - }) - if(this.refs.matrix.graph === undefined) { - console.log('error'); - return - } - let svgElement = this.refs.matrix.graph.el.lastChild - this.setState({ - graphWidth: svgElement.getBBox().width + 20, - graphHeight: svgElement.getBBox().height, - }, - ()=>{ - // Download set-up - let DOMURL = window.URL || window.webkitURL || window - - //svg conversion - let updatedSvgElement = this.refs.matrix.graph.el.lastChild - let svgString = (new XMLSerializer()).serializeToString(updatedSvgElement) - let svgUrl = 'data:image/svg+xml; charset=utf8, '+encodeURIComponent(svgString) - - let canvas = this.refs.canvas - canvas.width = updatedSvgElement.getBBox().width - canvas.height = updatedSvgElement.getBBox().height - - // png conversion - let img = new Image() - let ctx = canvas.getContext('2d') - - img.onload = () => { - ctx.drawImage(img, 0, 0, canvas.width, canvas.height, 0, 0, canvas.width, canvas.height) - } - img.src = svgUrl - - this.setState({ - svgLink:svgUrl, - graphWidth: window.innerWidth, - graphHeight: window.innerHeight - 30, - cardSize: 20 - }) - } - ) - - /* Resize listener register */ - window.addEventListener('resize', this.handleResize) - - /* Socket.io */ - socket.on('PROCESSING', message => { - }) - - socket.on('SUCCESS', message => { - if (this.state.taskId === message.taskId) { - socket.disconnect(); - this.setState({ - loading: false, - success: true - }, - () => { - setTimeout(() => { - location.reload(true) - }, 2000) - }); - } - }) - socket.on('ERROR', message => { - }) - socket.on('CONFIG_UPDATED', message => { - if(message.uid === this.state.user.uid) { - // location.reload(true) - } - }) - } - - componentWillUnmount() { - socket.disconnect() - socket.close() - window.removeEventListener('resize', this.handleResize) - } - - render() { - const { loading, success } = this.state; - const { classes, theme } = this.props; - const buttonClassname = classNames({ - [classes.buttonSuccess]: success, - }); - const selectStyles = { - input: base => ({ - ...base, - color: theme.palette.text.primary, - }), - }; - return ( -
- - - - - - - {this.state.subject.sid + ' - ' + this.state.subject.project} - - - - - - - - - -
-
- -
-
- -
- - {loading && } -
-
-
- - - - - - Label - Min - Max - Mean - Missing % - - - - {this.generateStatItem(this.props.graph.matrixData)} - -
- - - - - - -
- ); - } -} - -const mapStateToProps = (state) => ({ - graph: state.graph, - user: state.user, - subject: state.subject -}) - -export default compose( - withStyles(styles, { withTheme: true }), - connect(mapStateToProps) -)(Graph); diff --git a/views/Graph.render.react.js b/views/Graph.render.react.js deleted file mode 100755 index df4a5579..00000000 --- a/views/Graph.render.react.js +++ /dev/null @@ -1,10 +0,0 @@ -import React from 'react' -import {render} from 'react-dom' -import { Provider } from 'react-redux' - -import Graph from './Graph.react' -import store from '../stores/store' - -const reduxStore = store() - -render(, document.getElementById('graph')) diff --git a/views/Graph.template.js b/views/Graph.template.js deleted file mode 100755 index c9e2bbdb..00000000 --- a/views/Graph.template.js +++ /dev/null @@ -1,56 +0,0 @@ -module.exports = (subject, project, user, name, icon, mail, acl, matrixData, configs, celeryTasks, role) => { - var userState = { - "uid": user, - "name" : name, - "icon" : icon, - "mail" : mail, - "role" : role, - "acl": acl, - "celeryTasks" : celeryTasks, - 'configs' : configs - }; - var subjectState = { - "sid": subject, - "project" : project - }; - var graphState = { - "matrixData" : matrixData.matrixData, - "configurations" : matrixData.matrixConfig, - "consentDate" : matrixData.consentDate - }; - - return ` - - - - ${subject} - DPdash - - - - - - -
- - - - `; - -}; diff --git a/views/GraphFactory.react.js b/views/GraphFactory.react.js deleted file mode 100755 index 97f27c94..00000000 --- a/views/GraphFactory.react.js +++ /dev/null @@ -1,41 +0,0 @@ -import React, {Component} from 'react' -import { findDOMNode } from 'react-dom' - -import Matrix from './Matrix.d3' - -export default class GraphFactory extends Component { - constructor(props) { - super(props) - this.graphs = { - matrix: Matrix, - } - } - componentDidMount() { - if(!this.props.data || Object.keys(this.props.data).length == 0) { - return - } - const el = findDOMNode(this) - this.graph = new this.graphs[this.props.type](el, this.props) - this.graph.create(this.props.data) - } - - componentDidUpdate() { - const el = findDOMNode(this) - if (el.firstChild) { - el.removeChild(el.firstChild) - } - if(!this.props.data || Object.keys(this.props.data).length == 0) { - return - } - this.graph = new this.graphs[this.props.type](el, this.props) - this.graph.create(this.props.data) - //this.graph.update(this.props.data, this.props) - } - - componentWillUnmount() { - } - - render() { - return (
) - } -} diff --git a/views/Login.react.js b/views/Login.react.js deleted file mode 100644 index 4c305e76..00000000 --- a/views/Login.react.js +++ /dev/null @@ -1,246 +0,0 @@ -import React from 'react'; -import Card from '@material-ui/core/Card'; -import CardContent from '@material-ui/core/CardContent'; -import CardMedia from '@material-ui/core/CardMedia'; -import Typography from '@material-ui/core/Typography'; -import TextField from '@material-ui/core/TextField'; -import Visibility from '@material-ui/icons/Visibility'; -import VisibilityOff from '@material-ui/icons/VisibilityOff'; -import IconButton from '@material-ui/core/IconButton'; -import Input from '@material-ui/core/Input'; -import InputLabel from '@material-ui/core/InputLabel'; -import InputAdornment from '@material-ui/core/InputAdornment'; -import FormControl from '@material-ui/core/FormControl'; -import Button from '@material-ui/core/Button'; -import { connect } from 'react-redux'; -import Snackbar from '@material-ui/core/Snackbar'; - -class LoginPage extends React.Component { - constructor(props) { - super(props); - this.state = { - message: '', - username: '', - password: '', - showPassword: false, - open: false - }; - } - componentDidUpdate() { - } - - handleClick = () => { - this.setState({ - open: true, - }); - }; - - handleRequestClose = () => { - this.setState({ - open: false, - }); - }; - componentWillMount() { - if(this.props.user.message.length > 0) { - this.setState({ - open : true - }); - } - - /* Resize listener register */ - window.addEventListener('resize', this.handleResize) - } - handleResize = (event) => { - this.setState({ - windowWidth: window.innerWidth - }); - } - componentWillUnmount() { - window.removeEventListener('resize', this.handleResize); - } - handleChange = prop => event => { - this.setState({ [prop]: event.target.value }); - }; - handleMouseDownPassword = event => { - event.preventDefault(); - }; - handleClickShowPassword = () => { - this.setState(state => ({ showPassword: !this.state.showPassword })); - }; - render() { - return ( -
- -
- - - Welcome to DPdash! - - - Please log in to continue. - - -
-
-
- -
- - - {this.state.showPassword ? : } - - - ) - }} - required={true} - margin="normal" - /> - -
- - Forgot your password? - -
- -
- - - Don't have an account? - -   - - Sign up - - -
-
-
- {this.state.windowWidth < 620 ? null : - - } - - -
- ); - } -} -const mapStateToProps = (state) => ({ - user: state.user -}); - -export default connect(mapStateToProps)(LoginPage); diff --git a/views/Login.render.react.js b/views/Login.render.react.js deleted file mode 100755 index b6501106..00000000 --- a/views/Login.render.react.js +++ /dev/null @@ -1,10 +0,0 @@ -import React from 'react'; -import {render} from 'react-dom'; -import { Provider } from 'react-redux'; - -import LoginPage from './Login.react'; -import store from '../stores/store'; - -const reduxStore = store(); - -render(, document.getElementById('main')); diff --git a/views/Login.template.js b/views/Login.template.js deleted file mode 100755 index dbcbb79f..00000000 --- a/views/Login.template.js +++ /dev/null @@ -1,25 +0,0 @@ -module.exports = (message) => { - var userState = { - "message" : message, - }; - return ` - - - - - DPdash - - - - -
- - - - `; -}; diff --git a/views/Main.react.js b/views/Main.react.js deleted file mode 100755 index ade72a07..00000000 --- a/views/Main.react.js +++ /dev/null @@ -1,875 +0,0 @@ -import React, {Component} from 'react'; -import {compose} from 'redux'; -import {connect} from 'react-redux'; -import io from 'socket.io-client'; -import 'whatwg-fetch'; -import Select from 'react-select'; -import classNames from 'classnames'; -import _ from "lodash"; -import { Column, Table } from 'react-virtualized'; -import moment from 'moment'; -import update from 'immutability-helper'; - -import DrawerComponent from './Drawer.react'; - -import { withStyles } from '@material-ui/core/styles'; -import Drawer from '@material-ui/core/Drawer'; -import AppBar from '@material-ui/core/AppBar'; -import Divider from '@material-ui/core/Divider'; -import Toolbar from '@material-ui/core/Toolbar'; -import Typography from '@material-ui/core/Typography'; -import IconButton from '@material-ui/core/IconButton'; -import Hidden from '@material-ui/core/Hidden'; -import TextField from '@material-ui/core/TextField'; -import NoSsr from '@material-ui/core/NoSsr'; -import { emphasize } from '@material-ui/core/styles/colorManipulator'; -import Paper from '@material-ui/core/Paper'; -import MenuItem from '@material-ui/core/MenuItem'; -import Chip from '@material-ui/core/Chip'; -import Avatar from '@material-ui/core/Avatar'; -import Checkbox from '@material-ui/core/Checkbox'; -import Tooltip from '@material-ui/core/Tooltip'; - -import StarBorder from '@material-ui/icons/StarBorder'; -import Star from '@material-ui/icons/Star'; -import CheckBoxOutlineBlankIcon from '@material-ui/icons/CheckBoxOutlineBlank'; -import CheckBoxIcon from '@material-ui/icons/CheckBox'; -import Person from '@material-ui/icons/Person'; -import ColorLens from '@material-ui/icons/ColorLens'; -import ExitToApp from '@material-ui/icons/ExitToApp'; -import Settings from '@material-ui/icons/Settings'; -import SearchIcon from '@material-ui/icons/Search'; -import MenuIcon from '@material-ui/icons/Menu'; - -const socketAddress = 'https://' + window.location.hostname + '/'; -const socket = io(socketAddress, { - timeout: 1500 -}); - -const sortMenu = [ - {sort: 'days', order: 'asc', text: 'Days (Asc)'}, - {sort: 'days', order: 'desc', text: 'Days (Desc)'}, - {sort: 'synced', order: 'asc', text: 'Updated (Asc)'}, - {sort: 'synced', order: 'desc', text: 'Updated (Desc)'}, - {sort: 'subject', order: 'asc', text: 'Subject ID (Asc)'}, - {sort: 'subject', order: 'desc', text: 'Subject ID (Desc)'} -]; - -const drawerWidth = 200; -const styles = theme => ({ - root: { - flexGrow: 1, - height: '100vh', - zIndex: 1, - overflow: 'hidden', - position: 'relative', - display: 'flex', - width: '100%', - }, - appBar: { - position: 'absolute', - marginLeft: drawerWidth, - [theme.breakpoints.up('md')]: { - width: `calc(100% - ${drawerWidth}px)`, - }, - borderLeft: '1px solid rgba(0, 0, 0, 0.12)', - backgroundColor: 'white', - color: 'rgba(0, 0, 0, 0.54)' - }, - navIconHide: { - [theme.breakpoints.up('md')]: { - display: 'none', - }, - }, - drawerPaper: { - width: drawerWidth, - [theme.breakpoints.up('md')]: { - position: 'relative', - }, - borderRight: '0px' - }, - content: { - padding: 0, - borderLeft: '1px solid rgba(0, 0, 0, 0.12)', - flexGrow: 1, - backgroundColor: '#fefefe', - padding: theme.spacing.unit * 3, - }, - input: { - display: 'flex', - padding: 0, - }, - valueContainer: { - display: 'flex', - flexWrap: 'wrap', - flex: 1, - alignItems: 'center', - }, - chip: { - margin: `${theme.spacing.unit / 2}px ${theme.spacing.unit / 4}px`, - }, - chipFocused: { - backgroundColor: emphasize( - theme.palette.type === 'light' ? theme.palette.grey[300] : theme.palette.grey[700], - 0.08, - ), - }, - noOptionsMessage: { - padding: `${theme.spacing.unit}px ${theme.spacing.unit * 2}px`, - }, - singleValue: { - fontSize: 16, - }, - placeholder: { - position: 'absolute', - left: 2, - fontSize: 16, - }, - paper: { - marginTop: theme.spacing.unit, - position: 'absolute', - width: '100%' - }, -}); - -function NoOptionsMessage(props) { - return ( - - {props.children} - - ); -} -function inputComponent({ inputRef, ...props }) { - return
; -} -function Control(props) { - return ( - - ); -} -function Option(props) { - var index = props.children.indexOf(' '); - return ( - - - {props.children.substr(0, index)} - -   - - {props.children.substr(index)} - - - ); -} -function Placeholder(props) { - return ( - - {props.children} - - ); -} -function SingleValue(props) { - return ( - - {props.children} - - ); -} -function ValueContainer(props) { - return
{props.children}
; -} -function MultiValue(props) { - var index = props.children.indexOf(' '); - return ( - { - props.removeProps.onClick(); - props.removeProps.onMouseDown(event); - }} - /> - ); -} -function Menu(props) { - return ( - - {props.children} - - ); -} -function DropdownIndicator(props) { - return ( - - ); -} -const indicatorSeparatorStyle = { - display: 'none' -}; - -const IndicatorSeparator = ({ innerProps }) => { - return ( - - ); -}; - -var autocomplete = []; -var default_acl = []; - -class MainPage extends Component { - constructor(props) { - super(props); - this.state = { - acl: [], - default_acl : [], - mobileOpen: false, - icon: '', - totalSubjects: 0, - totalStudies: 0, - totalDays: 0, - search: [], - search_array: [], - width: 0, - height: 0, - marginHeight: 72, - marginWidth: 24, - sortBy: '', - sortDirection: 'ASC', - preferences: {}, - star: {}, - complete: {} - }; - } - componentDidUpdate() { - } - componentDidMount() { - this.setState({ - width: window.innerWidth - this.state.marginWidth, - height: window.innerHeight - this.state.marginHeight, - avatar : this.getAvatar() - }); - window.addEventListener('resize', this.handleResize) - } - fetchUserPreferences = (uid) => { - let star = this.state.star; - let complete = this.state.complete; - return fetch('/api/v1/users/' + uid + '/preferences', { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - if (response) { - star = 'star' in response ? response['star'] : star; - complete = 'complete' in response ? response['complete'] : complete; - } - this.setState({ - star: star, - complete: complete, - preferences: response - }); - return; - }); - } - handleComplete =(e, checked, cellData) => { - var study = cellData['rowData']['study']; - var subject = cellData['rowData']['subject']; - if (checked == true) { - this.complete(study, subject); - } else { - this.incomplete(study, subject); - } - } - handleStar =(e, checked, cellData) => { - var study = cellData['rowData']['study']; - var subject = cellData['rowData']['subject']; - if (checked == true) { - this.favorite(study, subject); - } else { - this.unfavorite(study, subject); - } - } - favorite = (study, subject) => { - const newState = this.state.star; - if (study in newState) { - let subjectIndex = newState[study].indexOf(subject); - if(subjectIndex == -1) { - let updated = update(this.state.star, { - [study]: { - $push: [subject] - } - }); - this.setState({star: updated}); - this.updateUserStars(updated); - this.starAcl(this.state.default_acl, updated); - } else { - //already favorited - } - } else { - let updated = update(this.state.star, { - [study]: { - $set: [subject] - } - }); - this.updateUserStars(updated); - this.setState({ - star: updated, - }); - this.starAcl(this.state.default_acl, updated); - } - } - unfavorite = (study, subject) => { - const newState = this.state.star; - if (study in newState) { - let subjectIndex = newState[study].indexOf(subject); - if(subjectIndex > -1) { - let updated = update(this.state.star, { - [study]: { - $splice: [[subjectIndex, 1]] - } - }); - this.updateUserStars(updated); - this.setState({ - star: updated, - }); - this.starAcl(this.state.default_acl, updated); - } - } - } - complete = (study, subject) => { - const newState = this.state.complete; - if (study in newState) { - let subjectIndex = newState[study].indexOf(subject); - if(subjectIndex == -1) { - let updated = update(this.state.complete, { - [study]: { - $push: [subject] - } - }); - this.setState({complete: updated}); - this.updateUserComplete(updated); - } else { - //already favorited - } - } else { - let updated = update(this.state.complete, { - [study]: { - $set: [subject] - } - }); - this.updateUserComplete(updated); - this.setState({ - complete: updated, - }); - } - } - incomplete = (study, subject) => { - const newState = this.state.complete; - if (study in newState) { - let subjectIndex = newState[study].indexOf(subject); - if(subjectIndex > -1) { - let updated = update(this.state.complete, { - [study]: { - $splice: [[subjectIndex, 1]] - } - }); - this.updateUserComplete(updated); - this.setState({ - complete: updated, - }); - } - } - } - starAcl = (default_acl, stars) => { - var starred_acl = []; - var unstarred_acl = []; - for(var i = 0; i < default_acl.length; i++) { - var study = default_acl[i]['study']; - var subject = default_acl[i]['subject']; - if(study in stars && stars[study].indexOf(subject) > -1) { - starred_acl.push(default_acl[i]); - } else { - unstarred_acl.push(default_acl[i]); - } - } - this.setState({ - acl: starred_acl.concat(unstarred_acl) - }); - } - checkComplete = (complete, cellData) => { - var study = (cellData['rowData']['study'] in this.state.complete); - if (study) { - var subject = this.state.complete[cellData['rowData']['study']].indexOf(cellData['rowData']['subject']); - if (subject > -1) { - return true; - } else { - return false; - } - } else { - return false; - } - } - checkStar = (star, cellData) => { - var study = (cellData['rowData']['study'] in this.state.star); - if (study) { - var subject = this.state.star[cellData['rowData']['study']].indexOf(cellData['rowData']['subject']); - if (subject > -1) { - return true; - } else { - return false; - } - } else { - return false; - } - } - updateUserStars = (star) => { - let uid = this.props.user.uid; - let preference = {}; - preference['star'] = star ? star : this.state.star; - preference['complete'] = this.state.complete; - preference['config'] = 'config' in this.state.preferences ? this.state.preferences['config'] : ''; - return fetch('/api/v1/users/' + uid + '/preferences', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - preferences: preference - }) - }).then((response) => { - return; - }); - } - updateUserComplete = (complete) => { - let uid = this.props.user.uid; - let preference = {}; - preference['star'] = this.state.star; - preference['complete'] = complete; - preference['config'] = 'config' in this.state.preferences ? this.state.preferences['config'] : ''; - return fetch('/api/v1/users/' + uid + '/preferences', { - method: 'POST', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - body: JSON.stringify({ - preferences: preference - }) - }).then((response) => { - return; - }); - } - handleResize = (event) => { - this.setState({ - width: window.innerWidth - this.state.marginWidth, - height: window.innerHeight - this.state.marginHeight - }) - } - componentWillMount() { - this.fetchSubjects(); - this.fetchUserPreferences(this.props.user.uid); - } - sort = ({sortBy, sortDirection}) => { - const sortedList = this.sortList({sortBy, sortDirection}) - this.setState({ - sortBy: sortBy, - sortDirection: sortDirection, - }) - this.starAcl(sortedList, this.state.star) - } - sortList = ({sortBy, sortDirection}) => { - let list = _.map(this.state.acl, _.clone) - return _.orderBy(list, [sortBy], sortDirection.toLowerCase()) - } - rowClassName = ({index}) => { - if (index < 0) { - return 'headerRow' - } else { - return index % 2 === 0 ? 'evenRow' : 'oddRow' - } - } - getAvatar = () => { - var icon = this.props.user.icon; - var username = this.props.user.name; - var uid = this.props.user.uid; - if(icon == '' || icon == undefined) { - if(username == '' || username == undefined) { - if(uid && uid.length > 0) { - return {uid[0]} - } else { - return - } - } else { - return {username[0]} - } - } else { - return - } - } - handleDrawerToggle = () => { - this.setState(state => ({ mobileOpen: !state.mobileOpen })); - }; - fetchSubjects = () => { - return window.fetch('/api/v1/studies', { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin' - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - let studies = response ? response : []; - window.fetch('/api/v1/subjects?q=' + JSON.stringify(studies), { - method: 'GET', - headers: { - 'Content-Type': 'application/json' - }, - credentials: 'same-origin', - }).then((response) => { - if (response.status !== 200) { - return - } - return response.json() - }).then((response) => { - this.autocomplete(this.aggregateSubjects(response), response) - }); - }); - } - handleSearch = value => { - this.setState({ - search : value, - search_array: value.map(option=> option.value) - }); - }; - handleChange = name => value => { - this.setState({ - [name]: value, - acl : _.map(default_acl, _.clone).filter((row) => { - var key = row.study + row.subject; - var filter = value.map(f => f.value); - if(filter.length > 0 && filter.indexOf(key) === -1) { - return false; - } else { - return true; - } - }) - }); - }; - componentWillUnmount() { - window.removeEventListener('resize', this.handleResize); - } - aggregateSubjects =(acl)=> { - var options = []; - for(var study = 0; study < acl.length; study++) { - Array.prototype.push.apply(options, acl[study].subjects); - } - return this.processDates(options) - } - processDates = (options) => { - const momentSetting = { - sameDay: '[Today]', - nextDay: '[Tomorrow]', - nextWeek: 'dddd', - lastDay: '[Yesterday]', - lastWeek: '[Last] dddd', - sameElse: 'MM/DD/YYYY'}; - const nowT = moment().local(); - for(var i = 0; i < options.length; i++) { - var row = options[i]; - var syncedT = moment.utc(row.synced).local(); - var syncedL = moment(syncedT.format('YYYY-MM-DD')) - .calendar(null,momentSetting); - var days = nowT.diff(syncedT, 'days'); - var color = days > 14 ? '#de1d16' : '#14c774'; - options[i]['synced'] = syncedL; - options[i]['lastSyncedColor'] = color; - } - return options; - } - autocomplete = (options, acl) => { - autocomplete = options.map(option => ({ - value: option.study + option.subject, - label: option.subject + ' in ' + option.study - })); - default_acl = options; - this.starAcl(options, this.state.star) - this.setState({ - totalStudies: acl.length, - totalSubjects: options.length, - totalDays: Math.max.apply(Math, options.map(function(o) { return o.days; })), - default_acl: options - }); - } - getStudyCell = (data) => { - return {data.study} - }; - getSubjectCell = (data) => { - return {data.subject} - } - getSyncedCell = (data, type) => { - var complete = this.state.complete; - if(data.study in complete && complete[data.study].indexOf(data.subject)> -1) { - return {data.synced} - } else { - return {data.synced} - } - }; - render() { - const { classes, theme } = this.props; - const components = { Option, Control, - NoOptionsMessage, Placeholder, - SingleValue, MultiValue, IndicatorSeparator, - ValueContainer, Menu, DropdownIndicator }; - const selectStyles = { - input: base => ({ - ...base, - color: theme.palette.text.primary, - }), - }; - const momentSetting = { - sameDay: '[Today]', - nextDay: '[Tomorrow]', - nextWeek: 'dddd', - lastDay: '[Yesterday]', - lastWeek: '[Last] dddd', - sameElse: 'MM/DD/YYYY'}; - const nowT = moment().local(); - return ( -
- - - - - -
- - field.onChange(e.target.value)} + /> + ))} +
+ + )} + /> + +
+ ) +} + +export default ColorPicker diff --git a/views/components/ConfigurationCategoryCard/index.jsx b/views/components/ConfigurationCategoryCard/index.jsx new file mode 100644 index 00000000..ce72c336 --- /dev/null +++ b/views/components/ConfigurationCategoryCard/index.jsx @@ -0,0 +1,27 @@ +import React from 'react' + +import { Delete, ContentCopy } from '@mui/icons-material' +import { Card, CardActions, CardContent, IconButton } from '@mui/material' + +const ConfigurationCategoryCard = ({ + children, + formIndex, + onCopy, + onRemove, +}) => { + return ( + + {children} + + onRemove(formIndex)}> + + + onCopy(formIndex)}> + + + + + ) +} + +export default ConfigurationCategoryCard diff --git a/views/components/Graph/Graph.test.jsx b/views/components/Graph/Graph.test.jsx new file mode 100644 index 00000000..9ee471d5 --- /dev/null +++ b/views/components/Graph/Graph.test.jsx @@ -0,0 +1,56 @@ +import { render, screen, waitFor } from '@testing-library/react' +import { MemoryRouter } from 'react-router-dom' + +import { Graph } from '.' +import { createGraphDataResponse, createUser } from '../../../test/fixtures' +import api from '../../api' + +const mockGraphDataResponse = createGraphDataResponse({ + subject: { + sid: 'subject', + project: 'study', + }, +}) +describe('Graph', () => { + const user = createUser({ preferences: { config: 'config' } }) + + it('calls the graph data API endpoint for the given participant', async () => { + const mockApi = jest.spyOn(api.dashboard, 'load') + mockApi.mockResolvedValue(mockGraphDataResponse) + + render( + + + + ) + await waitFor(() => { + expect(api.dashboard.load).toHaveBeenCalledWith('study', 'subject') + }) + }) + it('renders the graph', async () => { + const mockApi = jest.spyOn(api.dashboard, 'load') + mockApi.mockResolvedValue(mockGraphDataResponse) + + render( + + + + ) + const graphElement = await screen.findByTestId('graph') + await waitFor(() => { + expect(graphElement.firstChild).toBeInTheDocument() + }) + }) +}) diff --git a/views/components/Graph/index.jsx b/views/components/Graph/index.jsx new file mode 100644 index 00000000..132488c7 --- /dev/null +++ b/views/components/Graph/index.jsx @@ -0,0 +1,213 @@ +import React, { createRef, useRef, useState } from 'react' + +import { Save, Functions } from '@mui/icons-material' +import { + Box, + Button, + DialogActions, + DialogContent, + Dialog, + Typography, +} from '@mui/material' +import FileSaver from 'file-saver' +import { Link } from 'react-router-dom' + +import { fontSize } from '../../../constants' +import api from '../../api' +import { routes } from '../../routes/routes' +import GraphPageTable from '../GraphPageTable' +import Matrix from '../Matrix.d3' + +const cardSize = 20 + +export const Graph = ({ study, subject, user, theme, setNotification }) => { + const [shoulDrawPng, setShouldDrawPng] = useState(false) + const canvasRef = useRef() + const graphRef = createRef() + const [openStat, setOpenStat] = React.useState(false) + const [graph, setGraph] = React.useState({ + configurations: [], + consentDate: '', + matrixData: [], + }) + const [dayData, setDayData] = React.useState({ + startFromTheLastDay: false, + startDay: 1, + lastDay: null, + maxDay: 1, + }) + + const fetchGraph = async () => await api.dashboard.load(study, subject) + const downloadPng = () => + canvasRef.current.toBlob((blob) => { + FileSaver.saveAs(blob, `${subject}.png`) + }) + + const closeStat = () => setOpenStat(false) + const updateMaxDay = (graph) => { + const daysParticipated = graph.matrixData + .flatMap(({ data }) => data) + .map(({ day }) => day) + const calculateMaxDay = Math.max(...daysParticipated) + + setDayData({ ...dayData, maxDay: calculateMaxDay || 1 }) + } + + const onMount = async () => { + try { + const graphData = await fetchGraph() + + setGraph(graphData.graph) + updateMaxDay(graphData.graph) + + if (!HTMLCanvasElement.prototype.toBlob) { + Object.defineProperty(HTMLCanvasElement.prototype, 'toBlob', { + value(callback, type, quality) { + const binStr = atob( + HTMLCanvasElement.prototype + .toDataURL(type, quality) + .split(',')[1] + ), + len = binStr.length, + arr = new Uint8Array(len) + + for (let i = 0; i < len; i++) { + arr[i] = binStr.charCodeAt(i) + } + callback(new Blob([arr], { type: type || 'image/png' })) + }, + }) + } + } catch (e) { + setNotification({ open: true, message: e.message }) + } + } + const renderMatrix = (graph) => { + if (graphRef.current && graphRef.current.firstChild) { + graphRef.current.removeChild(graphRef.current.firstChild) + } + if ( + !graph || + !graph.matrixData || + Object.keys(graph.matrixData).length === 0 + ) { + return + } + const matrixProps = { + id: 'matrix', + type: 'matrix', + data: graph.matrixData, + cardSize, + study, + subject, + consentDate: graph.consentDate, + configuration: graph.configurations, + startFromTheLastDay: dayData.startFromTheLastDay, + startDay: dayData.startDay, + lastDay: dayData.lastDay, + maxDay: dayData.maxDay, + user: user.uid, + } + + graphRef.current = new Matrix(graphRef.current, matrixProps) + graphRef.current.create(graph.matrixData) + + setShouldDrawPng(true) + } + + React.useEffect(() => { + onMount() + }, [user.preferences.config]) + + React.useEffect(() => { + if (shoulDrawPng) { + const updatedSvgElement = graphRef.current.lastChild + + const svgString = new XMLSerializer().serializeToString(updatedSvgElement) + + const kanvas = canvasRef.current + kanvas.width = updatedSvgElement.getBBox().width + kanvas.height = updatedSvgElement.getBBox().height + + const svgUrl = + 'data:image/svg+xml; charset=utf8, ' + + encodeURIComponent( + svgString.replace( + '', + `` + ) + ) + + // png conversion + const img = new Image(kanvas.width, kanvas.height) + const ctx = kanvas.getContext('2d') + img.src = svgUrl + + img.onload = () => { + ctx.drawImage(img, 0, 0) + } + + setShouldDrawPng(false) + } + }, [shoulDrawPng]) + + React.useEffect(() => { + renderMatrix(graph) + }, [graph.matrixData]) + + return ( + + + {subject} + + +
+
+
+
+ +
+ + + + + + + + + + + ) +} diff --git a/views/components/GraphPageTable/GraphPageTableCell.jsx b/views/components/GraphPageTable/GraphPageTableCell.jsx new file mode 100644 index 00000000..b5d9da59 --- /dev/null +++ b/views/components/GraphPageTable/GraphPageTableCell.jsx @@ -0,0 +1,13 @@ +import * as React from 'react' + +import TableCell from '@mui/material/TableCell' + +const GraphPageTableCell = (props) => { + return ( + + {props.children} + + ) +} + +export default GraphPageTableCell diff --git a/views/components/GraphPageTable/index.jsx b/views/components/GraphPageTable/index.jsx new file mode 100644 index 00000000..558bb9e1 --- /dev/null +++ b/views/components/GraphPageTable/index.jsx @@ -0,0 +1,69 @@ +import * as React from 'react' + +import Table from '@mui/material/Table' +import TableBody from '@mui/material/TableBody' +import TableHead from '@mui/material/TableHead' +import TableRow from '@mui/material/TableRow' + +import GraphPageTableCell from './GraphPageTableCell' + +const GraphPageTable = (props) => { + return ( + + + + Label + Min + Max + Mean + Missing % + + + + {props.matrixData.map((data, idx) => { + const validData = data.data.filter( + (assessmentData) => + typeof assessmentData[data.variable] === 'number' + ) + const missingDataPercentage = + 100 - (validData.length * 100) / props.maxDay + const dataStat = data.stat[0] + + return ( + + + {data.label} + + + {!isNaN(parseFloat(dataStat?.min)) && isFinite(dataStat.min) + ? dataStat.min.toFixed(2) + : 'N/A'} + + + {!isNaN(parseFloat(dataStat?.max)) && isFinite(dataStat.max) + ? dataStat.max.toFixed(2) + : 'N/A'} + + + {!isNaN(parseFloat(dataStat?.mean)) && isFinite(dataStat.mean) + ? dataStat.mean.toFixed(2) + : 'N/A'} + + + {`${missingDataPercentage.toFixed(2)} (${validData.length}/${ + props.maxDay + })`} + + + ) + })} + +
+ ) +} + +export default GraphPageTable diff --git a/views/components/GraphTable/GraphTable.css b/views/components/GraphTable/GraphTable.css new file mode 100644 index 00000000..ed21dc7c --- /dev/null +++ b/views/components/GraphTable/GraphTable.css @@ -0,0 +1,5 @@ +.GraphTable_Top { + padding: 25px; + display: flex; + justify-content: flex-end; +} diff --git a/views/components/GraphTable/index.jsx b/views/components/GraphTable/index.jsx new file mode 100644 index 00000000..1b9ba3b6 --- /dev/null +++ b/views/components/GraphTable/index.jsx @@ -0,0 +1,67 @@ +import React from 'react' + +import { SaveAlt } from '@mui/icons-material' +import { Paper, Button } from '@mui/material' + +import { SORT_DIRECTION } from '../../../constants' +import Table from '../../tables/Table' + +import './GraphTable.css' + +const GraphTable = ({ + graph, + onGetCsv, + page, + rowsPerPage, + handleChangePage, + handleChangeRowsPerPage, + onSort, + rowCount, + tableColumns, + tableRows, + sortBy, + sortDirection, +}) => { + if (!graph) return null + + const cellRenderer = (site, property) => site[property] + + const handleRequestSort = (_event, property) => { + const isAsc = sortDirection === SORT_DIRECTION.ASC + + return onSort(property, isAsc ? SORT_DIRECTION.DESC : SORT_DIRECTION.ASC) + } + + return ( + +
+ +
+ + + ) +} + +export default GraphTable diff --git a/views/components/HeroCard/HeroCard.css b/views/components/HeroCard/HeroCard.css new file mode 100644 index 00000000..0bb2d13b --- /dev/null +++ b/views/components/HeroCard/HeroCard.css @@ -0,0 +1,22 @@ +.HeroCard_container { + box-shadow: 0 0 0 0; + width: 350px; +} +.HeroCard_button { + text-transform: none; + border-radius: 8px; +} +.HeroCard_image { + height: 80px; +} + +@media screen and (min-width: 900px) { + .HeroCard_container { + width: 565px; + /* flex-grow: 1; */ + } + .HeroCard_image { + height: 106px; + width: 476px; + } +} diff --git a/views/components/HeroCard/HeroCard.test.jsx b/views/components/HeroCard/HeroCard.test.jsx new file mode 100644 index 00000000..10c01741 --- /dev/null +++ b/views/components/HeroCard/HeroCard.test.jsx @@ -0,0 +1,44 @@ +import React from 'react' + +import { render, screen } from '@testing-library/react' +import { MemoryRouter } from 'react-router-dom' + +import Hero from '.' + +describe('Hero Component', () => { + beforeEach(() => { + render( + + + + ) + }) + + test('renders Hero image', () => { + const image = screen.getByRole('img') + + expect(image).toBeInTheDocument() + }) + + test('renders Hero content', () => { + const heroCopyContent = + 'DPDash is a Deep/Digital Phenotyping Dashboard designed to manage and visualize multiple data streams coming in continuously over extended periods of time in individuals.' + const content = screen.getByText(heroCopyContent) + + expect(content).toBeInTheDocument() + }) + + test('renders Hero Learn More button', () => { + const learnMoreButton = screen.getByText('Learn More') + + expect(learnMoreButton).toBeDefined() + }) + test('Learn More button has href attribuates', () => { + const learnMoreButton = screen.getByText('Learn More') + + expect(learnMoreButton).toHaveAttribute( + 'href', + 'https://sites.google.com/g.harvard.edu/dpdash/' + ) + }) +}) diff --git a/views/components/HeroCard/index.jsx b/views/components/HeroCard/index.jsx new file mode 100644 index 00000000..07bfac22 --- /dev/null +++ b/views/components/HeroCard/index.jsx @@ -0,0 +1,42 @@ +import React from 'react' + +import { ArrowForwardOutlined } from '@mui/icons-material' +import { + Button, + Card, + CardMedia, + CardContent, + CardActions, + Typography, +} from '@mui/material' +import './HeroCard.css' + +const HeroCard = () => { + return ( + + + + + DPDash is a Deep/Digital Phenotyping Dashboard designed to manage and + visualize multiple data streams coming in continuously over extended + periods of time in individuals. + + + + + + + ) +} + +export default HeroCard diff --git a/views/components/HeroFooter/HeroFooter.css b/views/components/HeroFooter/HeroFooter.css new file mode 100644 index 00000000..a7975ae8 --- /dev/null +++ b/views/components/HeroFooter/HeroFooter.css @@ -0,0 +1,40 @@ +.HeroFooter_container { + bottom: 0; + display: flex; + gap: 60px; + left: 0; + padding: 24px 72px; + right: 0; +} + +.HeroFooter_linksContainer { + display: flex; + gap: 40px; +} + +@media screen and (max-width: 500px) { + .HeroFooter_container { + flex-direction: column-reverse; + gap: 20px; + padding: 20px; + } + .HeroFooter_linksContainer { + gap: 20px; + flex-direction: column; + } +} + +@media screen and (min-width: 700px) { + .HeroFooter_container { + position: fixed; + } + .HeroFooter_linksContainer { + gap: 24px; + } +} + +@media screen and (min-width: 1000px) { + .HeroFooter_linksContainer { + gap: 80px; + } +} diff --git a/views/components/HeroFooter/HeroFooter.test.jsx b/views/components/HeroFooter/HeroFooter.test.jsx new file mode 100644 index 00000000..f7c1bbd0 --- /dev/null +++ b/views/components/HeroFooter/HeroFooter.test.jsx @@ -0,0 +1,43 @@ +import React from 'react' + +import { render, screen } from '@testing-library/react' +import { MemoryRouter } from 'react-router-dom' + +import HeroFooter from '.' + +describe('Hero Component', () => { + beforeEach(() => { + render( + + + + ) + }) + + test('renders copyright notice', () => { + const currentYear = new Date().getFullYear() + const copyright = screen.getByText( + `©${currentYear} Mass General Hospital. All rights reserved.` + ) + + expect(copyright).toBeInTheDocument() + }) + + test('renders contact us link', () => { + const contactUsLink = screen.getByText('Contact Us') + + expect(contactUsLink).toBeInTheDocument() + }) + + test('renders contact us link', () => { + const privacyPolicyLink = screen.getByText('Privacy Policy') + + expect(privacyPolicyLink).toBeInTheDocument() + }) + + test('renders contact us link', () => { + const termsOfUseLink = screen.getByText('Terms of Use') + + expect(termsOfUseLink).toBeInTheDocument() + }) +}) diff --git a/views/components/HeroFooter/HeroFooterLink.jsx b/views/components/HeroFooter/HeroFooterLink.jsx new file mode 100644 index 00000000..263e0d40 --- /dev/null +++ b/views/components/HeroFooter/HeroFooterLink.jsx @@ -0,0 +1,20 @@ +import React from 'react' + +import { Typography } from '@mui/material' +import { Link } from 'react-router-dom' + +import { fontSize } from '../../../constants' + +const HeroFooterLink = ({ to, label }) => { + return ( + + {label} + + ) +} + +export default HeroFooterLink diff --git a/views/components/HeroFooter/index.jsx b/views/components/HeroFooter/index.jsx new file mode 100644 index 00000000..88af35ab --- /dev/null +++ b/views/components/HeroFooter/index.jsx @@ -0,0 +1,37 @@ +import React from 'react' + +import { Box, Typography } from '@mui/material' + +import HeroFooterLink from './HeroFooterLink' +import { fontSize } from '../../../constants' +import { routes } from '../../routes/routes' + +import './HeroFooter.css' + +const HeroFooter = () => { + const currentYear = new Date().getFullYear() + + return ( + + + ©{currentYear} Mass General Hospital. All rights reserved. + +
+ + + +
+ + ) +} + +export default HeroFooter diff --git a/views/components/Matrix.d3.js b/views/components/Matrix.d3.js new file mode 100644 index 00000000..ad49caea --- /dev/null +++ b/views/components/Matrix.d3.js @@ -0,0 +1,408 @@ +import * as d3 from 'd3' + +import { stringToDate } from '../../server/utils/dateConverter' +import { getColor } from '../../server/utils/invertColor' + +const margin = { + top: 30, + bottom: 20, + left: 10, + right: 30, +} + +const cellWidth = 65 +const DARK_GREY = '#545454' +const GREY = '#e6e6e6' +const NONE = 'none' +const WHITE = '#ffffff' + +export default class Matrix { + constructor(el, props) { + this.el = el + this.cardSize = props.cardSize + this.halfCardSize = props.cardSize / 2 + this.startDay = props.startDay + this.lastDay = props.lastDay + this.maxDay = props.maxDay + this.study = props.study + this.subject = props.subject + this.consentDate = props.consentDate + this.startFromTheLastDay = props.startFromTheLastDay + } + + cleanData = (data) => { + if (data.length > 0) { + return data + } + + const newData = [] + for (let day = this.startDay; day <= this.lastDayForFilter; day++) { + newData.push({ day }) + } + + return newData + } + + get lastDayForFilter() { + return this.lastDay === null || this.lastDay === '' + ? this.maxDay + : this.lastDay + } + + validDay = (d) => d.day >= this.startDay && d.day <= this.lastDayForFilter + create = (data) => { + this.data = data + const calculatedHeight = + data.length * this.cardSize + margin.top + margin.bottom + + const svgElement = d3 + .select(this.el) + .append('svg') + .attr('width', () => '100%') + .attr('height', () => calculatedHeight) + this.svg = svgElement.append('g') + this.cards = this.svg + .append('g') + .attr('class', 'Cards') + .attr('transform', 'translate(0,0)') + + let category = null + const yIndices = [] + + for (let idx = 0; idx < data.length; idx++) { + const dataEl = data[idx] + + if (category !== dataEl.category) { + category = dataEl.category + yIndices.push(idx) + } + + //d3.thresholdScale takes in range as (firstIndex, lastIndex]. This is a way around to ensure we get [firstIndex, lastIndex] + const colors = dataEl.color.slice() + colors.unshift(dataEl.color[0]) + const range = + dataEl.range.length === 2 + ? d3.range( + dataEl.range[0], + dataEl.range[1], + (dataEl.range[1] - dataEl.range[0]) / 8 + ) + : dataEl.range + const thresholdScale = d3.scaleThreshold().domain(range).range(colors) + + if (Object.hasOwn(dataEl, 'data')) { + const dataVariable = dataEl.variable + + //append rectangles filled with colors <3 + const card = this.cards + .selectAll('.cell') + .data(this.cleanData(dataEl.data), (d) => `${dataEl.label}:${d.day}`) + card + .enter() + .append('rect') + .filter(this.validDay) + .attr('x', (d) => (d.day - this.startDay) * cellWidth) + .attr('y', () => idx * this.cardSize) + .attr('class', 'Card hour') + .attr('width', cellWidth) + .attr('height', this.cardSize) + .style('fill', (d) => + d[dataVariable] !== '' && d[dataVariable] !== undefined + ? thresholdScale(d[dataVariable]) + : WHITE + ) + .style('stroke', (d) => (d[dataVariable] === undefined ? NONE : GREY)) + .style('stroke-width', '2px') + .on('click', (d) => { + const val = d[dataVariable] || 'Not Available' + const msg = `The value for ${dataEl.label} on day ${d.day} is: ${val}` + + alert(msg) + }) + .append('svg:title') + .filter(this.validDay) + .text((d) => d[dataVariable]) + + if (dataEl?.text === true) { + card + .enter() + .append('text') + .filter(this.validDay) + .text((d) => d[dataVariable]) + .attr( + 'x', + (d) => (d.day - this.startDay) * cellWidth + cellWidth / 2 + ) + .attr('y', () => idx * this.cardSize + (this.cardSize * 3) / 4) + .attr('font-size', this.halfCardSize) + .style('fill', (d) => { + const blockColor = d[dataVariable] + ? thresholdScale(d[dataVariable]) + : WHITE + + return getColor(blockColor, true) + }) + .attr('font-family', 'Tahoma, Geneva, sans-serif') + .style('text-anchor', 'middle') + } + } + } + this.maxYAxisWidth = margin.left + this.matrixHeight = margin.top //temp placeholder + this.matrixWidth = this.svg + .select('.Cards') + .node() + .getBoundingClientRect().width + + const leftMarginWhiteOut = this.generateMarginWhiteOutLeft() + //an array of labels for the variables + const yAxisRange = [] + const yAxisValues = [] + for (let idx = 0; idx < data.length; idx++) { + yAxisRange.push((idx + 1) * this.cardSize - this.halfCardSize) + yAxisValues.push(idx) + } + this.yScaleLinear = d3 + .scaleLinear() + .range([this.halfCardSize, yAxisRange[yAxisRange.length - 1]]) + .domain([0, data.length - 1]) + this.yAxisLinear = d3 + .axisLeft(this.yScaleLinear) + .ticks(data.length - 1) + .tickValues(yAxisValues) + .tickSize(0) + + this.yAxisLeft = this.svg + .append('g') + .attr('class', 'yAxisLinear') + .call(this.yAxisLinear) + this.adjustYAxisLeft() + this.maxYAxisWidth = this.svg.select('.yAxisLinear').node().getBBox().width + this.matrixHeight = + this.svg.select('.yAxisLinear').node().getBBox().height + this.cardSize + + if (this.initialHeight === -1) { + svgElement + .attr('width', () => Math.max(this.width, 0)) + .attr('height', this.matrixHeight + this.cardSize * 2) + } else if (this.initialHeight === 0 && this.width === 0) { + svgElement + .attr('width', () => Math.max(this.width, 0)) + .attr('height', this.matrixHeight + this.cardSize * 2) + + this.matrixHeight = this.matrixHeight + this.cardSize * 3 + } + + this.svg.attr( + 'transform', + `translate(${this.maxYAxisWidth + margin.left},${margin.top - 5})` + ) + leftMarginWhiteOut.attr( + 'transform', + `translate(-${this.maxYAxisWidth + margin.left},-${this.cardSize})` + ) + leftMarginWhiteOut + .select('rect') + .attr('width', this.maxYAxisWidth + margin.left) + .attr('height', this.matrixHeight + this.cardSize) + this.categoryMarker = this.generateCategoryMarker(yIndices) + this.generateMarginWhiteOutBottom() + this.generateMarginWhiteOutTop() + this.xAxisForDatesData = this.generateXAxisForDatesData() + this.generateXAxis() + this.generateWhiteSpaceTopLeft() + + if (this.startFromTheLastDay) { + this.update() + } + } + + adjustYAxisLeft = () => { + return this.yAxisLeft + .selectAll('text') + .data(this.data) + .text((d) => d.label) + .attr('font-size', this.halfCardSize) + .style('fill', DARK_GREY) + } + + filteredXAxisTop = () => { + return this.xAxisTop + .selectAll('text') + .data(this.xAxisForDatesData.filter(this.validDay)) + .text((d) => d.marker) + .attr('class', (d) => (d.marker === 'N/A' ? 'EmptyDates' : 'DatesText')) + } + + generateXAxisForDatesData = () => { + const xAxisForDatesData = [] + const startDate = this.consentDate + ? stringToDate(this.consentDate, 'yyyy-mm-dd', '-') + : null + const firstDay = this.startDay - 1 //Consent date is 1 + for (let i = firstDay; i < this.lastDayForFilter; i++) { + const day = i + 1 + + if (startDate && (startDate.getDay() === 0 || startDate.getDay() === 6)) { + xAxisForDatesData.push({ day, marker: 'S' }) + } else if (startDate && startDate.getDay() === 3) { + const month = startDate.getMonth() + 1 + const localeDate = `${month}/${startDate.getDate()}/${startDate.getFullYear()}` + + xAxisForDatesData.push({ + day, + marker: localeDate.substring(0, localeDate.length - 5), + }) + } else { + xAxisForDatesData.push({ day, marker: 'N/A' }) + } + if (startDate) { + startDate.setDate(startDate.getDate() + 1) + } + } + + return xAxisForDatesData + } + + generateCategoryMarker = (indices) => { + const { matrixWidth, matrixHeight, maxYAxisWidth } = this + const categoryMarker = this.svg + .append('g') + .attr('class', 'CategoryMarker') + .attr('transform', 'translate(-' + maxYAxisWidth + ',0)') + + for (let i = 0; i < indices.length; i++) { + const yPosition = i === 0 ? 1 : indices[i] * this.cardSize + + categoryMarker + .append('line') + .attr('x1', 0) + .attr('x2', matrixWidth + maxYAxisWidth) + .attr('y1', yPosition) + .attr('y2', yPosition) + .attr('stroke', DARK_GREY) + } + categoryMarker + .append('line') + .attr('x1', 0) + .attr('x2', matrixWidth + maxYAxisWidth) + .attr('y1', matrixHeight - this.halfCardSize) + .attr('y2', matrixHeight - this.halfCardSize) + .attr('stroke-width', 1.5) + .attr('stroke', DARK_GREY) + + return categoryMarker + } + + generateXAxis = () => { + const { xAxisForDatesData, startDay } = this + const xAxisRange = [] + const xAxisValuesTop = [] + const xAxisValuesBottom = [] + + for (let idx = 0; idx < xAxisForDatesData.length; idx++) { + xAxisRange.push((idx + 1) * cellWidth - cellWidth / 2) + xAxisValuesBottom.push(xAxisForDatesData[idx].day.toString()) + xAxisValuesTop.push(idx) + } + + this.xScaleLinearTop = d3 + .scaleLinear() + .range([cellWidth / 2, xAxisRange[xAxisRange.length - 1] || 0]) + .domain([0, xAxisForDatesData.length - 1]) + this.xScaleLinearBottom = d3 + .scaleLinear() + .range([cellWidth / 2, xAxisRange[xAxisRange.length - 1] || 0]) + .domain( + [startDay, xAxisForDatesData[xAxisForDatesData.length - 1]?.day] || 0 + ) + this.xAxisLinearTop = d3 + .axisTop(this.xScaleLinearTop) + .ticks(xAxisForDatesData.length - 1 || 1) + .tickValues(xAxisValuesTop) + + this.xAxisTop = this.svg + .append('g') + .attr('class', 'xAxisLinearTop') + .call(this.xAxisLinearTop) + + this.filteredXAxisTop() + .attr('font-size', this.halfCardSize) + .style('fill', (d) => (d.marker === 'N/A' ? WHITE : DARK_GREY)) + + this.xAxisTop.selectAll('path').attr('stroke-opacity', 0) + this.xAxisTop.selectAll('line').attr('stroke-opacity', 0) + } + + get widthBasedFill() { + return this.width === 0 ? NONE : WHITE + } + + generateMarginWhiteOutLeft = () => { + const { matrixHeight, maxYAxisWidth } = this + + return this.generateSpace({ + width: maxYAxisWidth + margin.left + this.cardSize, + height: matrixHeight + this.cardSize, + x: 0, + y: -this.halfCardSize + 2, + }) + } + + generateMarginWhiteOutTop = () => { + const { matrixWidth, maxYAxisWidth } = this + + return this.generateSpace({ + width: matrixWidth + maxYAxisWidth, + height: this.cardSize + this.halfCardSize, + x: -maxYAxisWidth, + y: -(this.cardSize + this.halfCardSize), + }) + } + + generateMarginWhiteOutBottom = () => { + const bottomYCoordinate = + this.height > 0 && this.height < this.matrixHeight + ? this.height - this.cardSize * 2 + 1 + : this.matrixHeight - this.halfCardSize + 1 + this.generateSpace({ + width: this.matrixWidth + this.maxYAxisWidth, + height: this.cardSize + 2, + x: -this.maxYAxisWidth, + y: 0, + }) + .attr('class', 'marginBottom') + .attr('transform', `translate(0,${bottomYCoordinate})`) + } + + generateWhiteSpaceTopLeft = () => { + const { maxYAxisWidth } = this + + this.generateSpace({ + width: maxYAxisWidth + margin.left, + height: this.cardSize, + x: -(maxYAxisWidth + margin.left), + y: -this.cardSize, + }) + } + + generateSpace = ({ width, height, x, y }) => { + const el = this.svg.append('g') + + el.append('rect') + .attr('width', width) + .attr('height', height) + .attr('x', x) + .attr('y', y) + .style('fill', this.widthBasedFill) + + return el + } + + update() { + d3.select(this.el) + .select('svg') + .style('width', this.width) + .style('height', this.height) + } +} diff --git a/views/components/Modal/index.jsx b/views/components/Modal/index.jsx new file mode 100644 index 00000000..589a2c71 --- /dev/null +++ b/views/components/Modal/index.jsx @@ -0,0 +1,18 @@ +import { Typography, DialogTitle, DialogContent, Dialog } from '@mui/material' + +const Modal = (props) => { + return ( + + + {props.title} + + {props.children} + + ) +} + +export default Modal diff --git a/views/components/PageHeader/PageHeader.css b/views/components/PageHeader/PageHeader.css new file mode 100644 index 00000000..1dbd9b13 --- /dev/null +++ b/views/components/PageHeader/PageHeader.css @@ -0,0 +1,46 @@ +.PageHeader { + display: grid; + grid-template-columns: repeat(5, 1fr); + column-gap: 20px; + padding-bottom: 20px; +} +.PageHeaderTitle { + font-weight: 600; + font-size: 16px; + grid-column-start: 1; + flex-grow: 0.1; + padding-top: 10px; +} +.PageHeaderCTA { + grid-column-start: 4; + grid-column-end: 6; + align-content: center; +} +.PageHeaderDescription { + grid-column-start: 1; + grid-column-end: 5; +} + +@media screen and (max-width: 1200px) { + .PageHeader { + display: grid; + grid-template-columns: repeat(1, 1fr); + column-gap: 20px; + padding-bottom: 20px; + } + .PageHeaderCTA { + grid-column-start: 1; + align-content: center; + } + .PageHeaderDescription { + grid-column-start: 1; + } +} + +@media screen and (min-width: 2000px) { + .PageHeaderCTA { + grid-column-start: 5; + grid-column-end: 6; + align-content: center; + } +} diff --git a/views/components/PageHeader/index.jsx b/views/components/PageHeader/index.jsx new file mode 100644 index 00000000..dc75bcf8 --- /dev/null +++ b/views/components/PageHeader/index.jsx @@ -0,0 +1,55 @@ +import React from 'react' + +import { ArrowBack } from '@mui/icons-material' +import { Box, Typography, IconButton } from '@mui/material' + +import './PageHeader.css' + +const PageHeader = (props) => { + return props.isDescription ? ( + + + + + + {props.title} + {props.cta && {props.cta}} +
{props.description}
+ + ) : ( + + + {props.title} + + + + {props.form} + + + {props.cta && {props.cta}} + + ) +} + +export default PageHeader diff --git a/views/components/SearchSelect/MenuWithFooterActions.jsx b/views/components/SearchSelect/MenuWithFooterActions.jsx new file mode 100644 index 00000000..1c7e00b2 --- /dev/null +++ b/views/components/SearchSelect/MenuWithFooterActions.jsx @@ -0,0 +1,18 @@ +import React, { forwardRef } from 'react' + +import { Paper } from '@mui/material' + +const MenuWithFooterActions = forwardRef(function MenuWithFooterActions( + { children, actions, searchInput, ...other }, + ref +) { + return ( + + {searchInput} + {children} + {actions} + + ) +}) + +export default MenuWithFooterActions diff --git a/views/components/SearchSelect/SearchInput.css b/views/components/SearchSelect/SearchInput.css new file mode 100644 index 00000000..53abb4ba --- /dev/null +++ b/views/components/SearchSelect/SearchInput.css @@ -0,0 +1,9 @@ +.SearchInput { + padding: 10px; + position: sticky; + bottom: 0; + right: 0; + top: 0; + z-index: 100; + background-color: white; +} diff --git a/views/components/SearchSelect/SearchInput.jsx b/views/components/SearchSelect/SearchInput.jsx new file mode 100644 index 00000000..2abb405f --- /dev/null +++ b/views/components/SearchSelect/SearchInput.jsx @@ -0,0 +1,18 @@ +import React from 'react' + +import { TextField } from '@mui/material' +import './SearchInput.css' + +const SearchInput = ({ handleSearch }) => ( +
+ +
+) + +export default SearchInput diff --git a/views/components/SearchSelect/SearchSelect.test.jsx b/views/components/SearchSelect/SearchSelect.test.jsx new file mode 100644 index 00000000..bb716a71 --- /dev/null +++ b/views/components/SearchSelect/SearchSelect.test.jsx @@ -0,0 +1,88 @@ +import React from 'react' + +import { render, screen, waitFor } from '@testing-library/react' +import userEvent from '@testing-library/user-event' + +import SearchSelect from '.' + +jest.mock('react-hook-form', () => ({ + ...jest.requireActual('react-hook-form'), + useController: () => jest.fn().mockReturnValue({ field: {} }), + control: {}, +})) + +describe('Search Select', () => { + beforeEach(() => { + jest.resetAllMocks() + }) + + const defaultProps = { + control: {}, + options: [ + { label: 'AA', value: 'AA' }, + { label: 'BB', value: 'BB' }, + { label: 'CC', value: 'CC' }, + ], + actions: ( +
+ + +
+ ), + name: 'studies', + formValues: { studies: ['BB'] }, + label: 'search select', + } + const elements = { + searchSelect: () => + screen.getByRole('combobox', { label: 'search select' }), + } + const renderElement = (props) => render() + + it('renders a dropdown menu with input and actions', async () => { + renderElement(defaultProps) + + const searchSelect = elements.searchSelect() + + await userEvent.click(searchSelect) + + const searchSelectInput = await screen.findByLabelText('Find category') + const optionsPopupEl = await screen.findByRole('listbox') + const leftActionButton = await screen.findByText('Left') + const rightActionButton = await screen.findByText('Right') + + expect(optionsPopupEl.childElementCount).toEqual(3) + expect(searchSelectInput).toBeInTheDocument() + expect(leftActionButton).toBeInTheDocument() + expect(rightActionButton).toBeInTheDocument() + }) + + it('filters the list of options based on search', async () => { + renderElement(defaultProps) + + const searchSelect = elements.searchSelect() + + await userEvent.click(searchSelect) + + const searchSelectInput = await screen.findByLabelText('Find category') + + await userEvent.type(searchSelectInput, 'c') + const optionsPopupEl = await screen.findByRole('listbox') + + await waitFor(() => expect(optionsPopupEl.childElementCount).toEqual(1)) + }) + + it('checks the checkbox when value is within formValues', async () => { + renderElement(defaultProps) + + const searchSelect = elements.searchSelect() + + await userEvent.click(searchSelect) + + const unchecked = screen.getAllByTestId('CheckBoxOutlineBlankIcon') + const checked = screen.getAllByTestId('CheckBoxIcon') + + expect(unchecked.length).toBe(2) + expect(checked.length).toBe(1) + }) +}) diff --git a/views/components/SearchSelect/index.jsx b/views/components/SearchSelect/index.jsx new file mode 100644 index 00000000..4dc9b2f8 --- /dev/null +++ b/views/components/SearchSelect/index.jsx @@ -0,0 +1,81 @@ +import React, { useState, useMemo } from 'react' + +import { Card, Checkbox, Chip, MenuItem, ListItemText } from '@mui/material/' + +import MenuWithFooterActions from './MenuWithFooterActions' +import SearchInput from './SearchInput' +import { fontSize } from '../../../constants' +import ControlledSelect from '../../forms/ControlledSelect' + +const SearchSelect = ({ + control, + options, + actions, + name, + formValues, + label, +}) => { + const [search, setSearch] = useState('') + const displayedOptions = useMemo(() => { + const searchTerm = new RegExp(search, 'i') + return options.filter(({ value }) => searchTerm.test(value)) + }, [search]) + + const handleSearch = (e) => setSearch(e.target.value) + const handleClose = () => setSearch('') + + return ( + + selected.map((l) => ), + onClose: () => handleClose(), + multiple: true, + MenuProps: { + autoFocus: false, + MenuListProps: { + autoFocus: true, + }, + PaperProps: { + component: MenuWithFooterActions, + searchInput: , + actions: ( + + {actions} + + ), + }, + }, + }} + > + {displayedOptions.map(({ label, value }) => { + return ( + + + + + ) + })} + + ) +} + +export default SearchSelect diff --git a/views/components/Sidebar/NavItem.jsx b/views/components/Sidebar/NavItem.jsx new file mode 100644 index 00000000..4cba7204 --- /dev/null +++ b/views/components/Sidebar/NavItem.jsx @@ -0,0 +1,24 @@ +import React from 'react' + +import { ListItem, ListItemIcon, ListItemText } from '@mui/material' + +import SidebarLink from './SidebarLink' + +const NavItem = ({ to, Icon, label }) => { + return ( + + + + + + + ) +} + +export default NavItem diff --git a/views/components/Sidebar/SideNavigation.jsx b/views/components/Sidebar/SideNavigation.jsx new file mode 100644 index 00000000..795c9e66 --- /dev/null +++ b/views/components/Sidebar/SideNavigation.jsx @@ -0,0 +1,38 @@ +import React from 'react' + +import { + SpaceDashboard, + Group, + ShowChart, + DashboardCustomize, + AdminPanelSettings, + FolderOpen, +} from '@mui/icons-material' +import { List, Divider } from '@mui/material' + +import NavItem from './NavItem' +import { routes } from '../../routes/routes' + +const SideNavigation = ({ user }) => { + return ( + + ) +} + +export default SideNavigation diff --git a/views/components/Sidebar/SideNavigation.test.jsx b/views/components/Sidebar/SideNavigation.test.jsx new file mode 100644 index 00000000..8484adb2 --- /dev/null +++ b/views/components/Sidebar/SideNavigation.test.jsx @@ -0,0 +1,27 @@ +import React from 'react' + +import { render, screen } from '@testing-library/react' +import { MemoryRouter } from 'react-router-dom' + +import SideNavigation from './SideNavigation' +import { createUser } from '../../../test/fixtures' + +jest.mock('./SidebarLink') + +describe('SideNavigation', () => { + const user = createUser({ role: 'admin' }) + + beforeEach(() => { + render( + + + + ) + }) + + test('renders SideNavigation component', () => { + const nav = screen.getByTestId('nav') + + expect(nav).toBeInTheDocument() + }) +}) diff --git a/views/components/Sidebar/Sidebar.test.jsx b/views/components/Sidebar/Sidebar.test.jsx new file mode 100644 index 00000000..b54a5e3b --- /dev/null +++ b/views/components/Sidebar/Sidebar.test.jsx @@ -0,0 +1,39 @@ +import React from 'react' + +import { render, screen } from '@testing-library/react' +import { BrowserRouter } from 'react-router-dom' // Use MemoryRouter for testing routes + +import Sidebar from '.' +import { createUser } from '../../../test/fixtures' + +describe('Sidebar', () => { + const user = createUser() + + beforeEach(() => { + render(, { + wrapper: BrowserRouter, + }) + }) + + test('renders the Logo, Navigation and Footer', async () => { + const logo = screen.getByAltText('dpdash logo') + const navigation = screen.getByTestId('nav') + const footer = screen.getByAltText('D') + + expect(logo).toHaveAttribute('src', '/img/dpdash.png') + expect(navigation).toBeInTheDocument() + expect(footer).toBeInTheDocument() + }) + + test('it renders the side navigation items', () => { + const dashboard = screen.getByText('Dashboard') + const charts = screen.getByText('Charts') + const participants = screen.getByText('Participants') + const configurations = screen.getByText('Configurations') + + expect(dashboard).toBeInTheDocument() + expect(charts).toBeInTheDocument() + expect(participants).toBeInTheDocument() + expect(configurations).toBeInTheDocument() + }) +}) diff --git a/views/components/Sidebar/SidebarFooter.css b/views/components/Sidebar/SidebarFooter.css new file mode 100644 index 00000000..8de7855e --- /dev/null +++ b/views/components/Sidebar/SidebarFooter.css @@ -0,0 +1,17 @@ +.SidebarFooter_container { + margin-top: auto; + padding-left: 24px; +} + +.SidebarFooter_content { + padding: 8px 0; +} + +.SidebarFooter_actions { + display: flex; + gap: 16px; +} + +.SidebarFooter_version { + padding: 16px; +} diff --git a/views/components/Sidebar/SidebarFooter.jsx b/views/components/Sidebar/SidebarFooter.jsx new file mode 100644 index 00000000..958387e1 --- /dev/null +++ b/views/components/Sidebar/SidebarFooter.jsx @@ -0,0 +1,75 @@ +import React from 'react' + +import { + Typography, + Card, + Avatar, + CardHeader, + CardContent, + CardActions, + Button, +} from '@mui/material' +import { Link } from 'react-router-dom' + +import { fontSize } from '../../../constants' +import { routes } from '../../routes/routes' +import './SidebarFooter.css' + +const SidebarFooter = ({ user, onLogout }) => { + return ( + + } + sx={{ pb: '8px' }} + /> + + {user.display_name} + + {user.title} + + + + + + + + + DPdash v{process.env.DPDASH_VERSION} + + + + ) +} + +export default SidebarFooter diff --git a/views/components/Sidebar/SidebarFooter.test.jsx b/views/components/Sidebar/SidebarFooter.test.jsx new file mode 100644 index 00000000..cfe49dba --- /dev/null +++ b/views/components/Sidebar/SidebarFooter.test.jsx @@ -0,0 +1,48 @@ +import React from 'react' + +import { render, screen } from '@testing-library/react' +import { MemoryRouter } from 'react-router-dom' + +import SidebarFooter from './SidebarFooter' +import { createUser } from '../../../test/fixtures' + +describe('SidebarFooter', () => { + const envVars = process.env + const user = createUser() + + process.env.DPDASH_VERSION = '1.0.0' + + beforeEach(() => { + render( + + + + ) + }) + afterAll(() => { + process.env = envVars + }) + + test('renders SidebarFooter component with user data', async () => { + const userNameElement = screen.getByText(user.display_name) + const userAvatarElement = screen.getByAltText('D') + + expect(userNameElement).toBeInTheDocument() + expect(userAvatarElement).toBeInTheDocument() + }) + + test('renders Edit Profile and Log Out buttons with correct links', () => { + const editProfileButton = screen.getByText('Edit Profile') + const logOutButton = screen.getByText('Log out') + + expect(editProfileButton).toBeInTheDocument() + expect(editProfileButton).toHaveAttribute('href', '/user-account') + expect(logOutButton).toBeInTheDocument() + }) + + test('renders DPdash version correctly', () => { + const versionElement = screen.getByText('DPdash v1.0.0') + + expect(versionElement).toBeInTheDocument() + }) +}) diff --git a/views/components/Sidebar/SidebarLink.css b/views/components/Sidebar/SidebarLink.css new file mode 100644 index 00000000..f0402a0a --- /dev/null +++ b/views/components/Sidebar/SidebarLink.css @@ -0,0 +1,29 @@ +.SidebarLink_link { + border-radius: 8px; + display: flex; + gap: 20px; + text-decoration: none; + padding: 6px 12px; + + &:visited&:focus { + text-decoration: none; + } +} + +.SidebarLink_link-active { + display: flex; + text-decoration: none; + &:visited&:focus { + text-decoration: none; + } + background-color: var(--primary-light); + border-radius: 8px; +} + +.SidebarLink_link-active .MuiListItemIcon-root { + color: var(--text-secondary); +} + +.SidebarLink_link-active .MuiListItemText-root { + color: var(--text-secondary); +} diff --git a/views/components/Sidebar/SidebarLink.jsx b/views/components/Sidebar/SidebarLink.jsx new file mode 100644 index 00000000..25fcc554 --- /dev/null +++ b/views/components/Sidebar/SidebarLink.jsx @@ -0,0 +1,22 @@ +import React, { forwardRef } from 'react' + +import classNames from 'classnames' +import { NavLink } from 'react-router-dom' + +import './SidebarLink.css' + +const SidebarLink = forwardRef(function SidebarLink(props, ref) { + return ( + + classNames('SidebarLink_link', { 'SidebarLink_link-active': isActive }) + } + > + {props.children} + + ) +}) + +export default SidebarLink diff --git a/views/components/Sidebar/SidebarLogo.css b/views/components/Sidebar/SidebarLogo.css new file mode 100644 index 00000000..d8db941d --- /dev/null +++ b/views/components/Sidebar/SidebarLogo.css @@ -0,0 +1,9 @@ +.SidebarLogo_container { + display: flex; + justify-content: center; + align-items: center; + padding: 32px 16px; +} +.SidebarLogo_image { + height: 45px; +} diff --git a/views/components/Sidebar/SidebarLogo.jsx b/views/components/Sidebar/SidebarLogo.jsx new file mode 100644 index 00000000..cc54f81b --- /dev/null +++ b/views/components/Sidebar/SidebarLogo.jsx @@ -0,0 +1,16 @@ +import React from 'react' +import './SidebarLogo.css' + +const SidebarLogo = () => { + return ( +
+ dpdash logo +
+ ) +} + +export default SidebarLogo diff --git a/views/components/Sidebar/index.jsx b/views/components/Sidebar/index.jsx new file mode 100644 index 00000000..bd7ddf81 --- /dev/null +++ b/views/components/Sidebar/index.jsx @@ -0,0 +1,36 @@ +import React from 'react' + +import { Drawer } from '@mui/material' + +import SidebarFooter from './SidebarFooter' +import SidebarLogo from './SidebarLogo' +import SideNavigation from './SideNavigation' + +const Sidebar = ({ user, sidebarOpen, onLogout, isMobile, onClose }) => { + const status = isMobile ? 'temporary' : 'permanent' + + return ( + + + + + + ) +} + +export default Sidebar diff --git a/views/components/StatusChip/index.jsx b/views/components/StatusChip/index.jsx new file mode 100644 index 00000000..aadc4d19 --- /dev/null +++ b/views/components/StatusChip/index.jsx @@ -0,0 +1,23 @@ +import React from 'react' + +import { Chip } from '@mui/material' + +import { borderRadius, fontSize } from '../../../constants' + +const StatusChip = ({ isActive }) => { + return ( + + ) +} + +export default StatusChip diff --git a/views/components/StudyDetails/UploadFile.jsx b/views/components/StudyDetails/UploadFile.jsx new file mode 100644 index 00000000..59a7e833 --- /dev/null +++ b/views/components/StudyDetails/UploadFile.jsx @@ -0,0 +1,30 @@ +import Add from '@mui/icons-material/Add' +import Button from '@mui/material/Button' + +const UploadFile = ({ handleChangeFile }) => { + return ( +
+ + +
+ ) +} + +export default UploadFile diff --git a/views/components/UserAvatar/index.jsx b/views/components/UserAvatar/index.jsx new file mode 100644 index 00000000..0ad5660e --- /dev/null +++ b/views/components/UserAvatar/index.jsx @@ -0,0 +1,54 @@ +import React from 'react' + +import Person from '@mui/icons-material/AccountCircle' +import Avatar from '@mui/material/Avatar' + +import { colors } from '../../../constants' + +const DEFAULT_AVATAR_STYLE = { width: 60, height: 60 } +const AVATAR_STYLE_WITH_COLOR = { + ...DEFAULT_AVATAR_STYLE, + backgroundColor: colors.columbia_blue, +} +const SMALLER_AVATAR_STYLE = { + width: 30, + height: 30, +} +const SMALLER_AVATAR_WITH_COLOR = { + ...SMALLER_AVATAR_STYLE, + backgroundColor: colors.columbia_blue, +} +const UserAvatar = ({ user, small }) => { + const { icon, name, uid } = user + + if (icon) { + return ( + + ) + } + + if (name) { + return ( + + {name[0]} + + ) + } + + return uid && uid.length > 0 ? ( + + {uid[0]} + + ) : ( + + + + ) +} + +export default UserAvatar diff --git a/views/contexts/AuthContext.js b/views/contexts/AuthContext.js new file mode 100644 index 00000000..f5d4674d --- /dev/null +++ b/views/contexts/AuthContext.js @@ -0,0 +1,3 @@ +import { createContext } from 'react' + +export const AuthContext = createContext() diff --git a/views/contexts/GridContext.js b/views/contexts/GridContext.js new file mode 100644 index 00000000..1c29bb1a --- /dev/null +++ b/views/contexts/GridContext.js @@ -0,0 +1,3 @@ +import { createContext } from 'react' + +export const GridContext = createContext() diff --git a/views/contexts/NotificationContext.js b/views/contexts/NotificationContext.js new file mode 100644 index 00000000..96c83bba --- /dev/null +++ b/views/contexts/NotificationContext.js @@ -0,0 +1,3 @@ +import { createContext } from 'react' + +export const NotificationContext = createContext() diff --git a/views/contexts/ThemeContext.js b/views/contexts/ThemeContext.js new file mode 100644 index 00000000..bad3ab2c --- /dev/null +++ b/views/contexts/ThemeContext.js @@ -0,0 +1,3 @@ +import { createContext } from 'react' + +export const ThemeContext = createContext() diff --git a/views/contexts/index.js b/views/contexts/index.js new file mode 100644 index 00000000..91c84821 --- /dev/null +++ b/views/contexts/index.js @@ -0,0 +1,5 @@ +import { AuthContext } from './AuthContext' +import { NotificationContext } from './NotificationContext' +import { ThemeContext } from './ThemeContext' + +export { AuthContext, NotificationContext, ThemeContext } diff --git a/views/fe-utils/colorList.js b/views/fe-utils/colorList.js new file mode 100644 index 00000000..c1c02d51 --- /dev/null +++ b/views/fe-utils/colorList.js @@ -0,0 +1,9 @@ +import colorbrewer from 'colorbrewer' + +export const colorList = (colorObj = colorbrewer) => { + const { schemeGroups: _, ...colorBrewer } = colorObj + + return Object.values(colorBrewer) + .flatMap((colorPalette) => Object.values(colorPalette)) + .map((colors, i) => ({ value: i, label: colors })) +} diff --git a/views/fe-utils/colorList.test.js b/views/fe-utils/colorList.test.js new file mode 100644 index 00000000..2db38cb3 --- /dev/null +++ b/views/fe-utils/colorList.test.js @@ -0,0 +1,12 @@ +import { colorList } from './colorList' +import { createColorList, createColorbrewer } from '../../test/fixtures' + +const colorbrewer = createColorbrewer() + +describe('Utils - colorList', () => { + it('returns an array of objects containing a label and values property', () => { + const colors = colorList(colorbrewer) + + expect(colors).toEqual(createColorList()) + }) +}) diff --git a/views/fe-utils/helpers.js b/views/fe-utils/helpers.js new file mode 100644 index 00000000..0fc7d12a --- /dev/null +++ b/views/fe-utils/helpers.js @@ -0,0 +1,9 @@ +export const formatAsPercentage = (value = 0) => value.toFixed(0) + '%' + +export const studyCountsToPercentage = (studyCount, targetTotal) => { + if (!targetTotal || Number.isNaN(+studyCount) || Number.isNaN(+targetTotal)) { + return 0 + } + + return (+studyCount / +targetTotal) * 100 +} diff --git a/views/fe-utils/preferencesUtil.js b/views/fe-utils/preferencesUtil.js new file mode 100644 index 00000000..bf176b02 --- /dev/null +++ b/views/fe-utils/preferencesUtil.js @@ -0,0 +1,14 @@ +const babyProofPreferences = (preferences) => { + const defaultPreferences = { + complete: {}, + star: {}, + sort: 0, + } + + return { ...defaultPreferences, ...preferences } +} + +export const preparePreferences = (configurationId = '', preferences = {}) => ({ + ...babyProofPreferences(preferences), + config: configurationId, +}) diff --git a/views/fe-utils/styleUtil.js b/views/fe-utils/styleUtil.js new file mode 100644 index 00000000..49c9197a --- /dev/null +++ b/views/fe-utils/styleUtil.js @@ -0,0 +1,25 @@ +import { colors } from '../../constants' + +const getDefaultStyles = (theme) => ({ + root: { + flexGrow: 1, + zIndex: 1, + overflow: 'hidden', + position: 'relative', + display: 'flex', + width: '100%', + backgroundColor: colors.configWhite, + }, + content: { + flexGrow: 1, + backgroundColor: '#fefefe', + padding: theme.spacing.unit * 3, + }, + contentPadded: { + padding: '12px', + marginTop: '64px', + overflow: 'scroll', + }, +}) + +export default getDefaultStyles diff --git a/views/fe-utils/targetValuesUtil.js b/views/fe-utils/targetValuesUtil.js new file mode 100644 index 00000000..6cc94a2b --- /dev/null +++ b/views/fe-utils/targetValuesUtil.js @@ -0,0 +1,9 @@ +import { DISALLOWED_STUDIES } from '../../constants' + +const allowedStudies = (study) => !DISALLOWED_STUDIES.includes(study) + +export const targetValuesFields = (studyList) => + studyList.filter(allowedStudies).reduce((targets, study) => { + targets[study] = '' + return targets + }, {}) diff --git a/views/fe-utils/tooltipUtil.js b/views/fe-utils/tooltipUtil.js new file mode 100644 index 00000000..0d9c4f0f --- /dev/null +++ b/views/fe-utils/tooltipUtil.js @@ -0,0 +1,7 @@ +export const toolTipPercent = (count, targetTotal) => { + if (!targetTotal || Number.isNaN(+count) || Number.isNaN(+targetTotal)) { + return 0 + } + + return ((+count / +targetTotal) * 100).toFixed(0) +} diff --git a/views/fe-utils/windowUtil.js b/views/fe-utils/windowUtil.js new file mode 100644 index 00000000..560be64c --- /dev/null +++ b/views/fe-utils/windowUtil.js @@ -0,0 +1,5 @@ +const openNewWindow = (uri) => { + window.open(uri, '_self') +} + +export default openNewWindow diff --git a/views/forms/AdminUsersSearchForm/AdminUsersSearchForm.test.jsx b/views/forms/AdminUsersSearchForm/AdminUsersSearchForm.test.jsx new file mode 100644 index 00000000..8e251348 --- /dev/null +++ b/views/forms/AdminUsersSearchForm/AdminUsersSearchForm.test.jsx @@ -0,0 +1,41 @@ +import React from 'react' + +import { render, screen, waitFor } from '@testing-library/react' +import userEvent from '@testing-library/user-event' + +import { AdminUsersSearchForm } from '.' + +describe('Admin User Search Form', () => { + const defaultProps = { + allOptions: [ + { label: 'dpdash', value: 'dpdash' }, + { label: 'asdf', value: 'asdf' }, + { label: 'person', value: 'person' }, + ], + onSubmit: () => {}, + } + const elements = { + searchField: () => screen.getByRole('combobox'), + } + const renderForm = (props = defaultProps) => { + render() + } + + test('calls the onSubmit prop when the form is submitted with valid data', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { ...defaultProps, onSubmit } + + renderForm(props) + + user.type(elements.searchField(), 'dpdash') + + userEvent.click(await screen.findByText('dpdash')) + + await waitFor(() => + expect(onSubmit).toHaveBeenCalledWith([ + { label: 'dpdash', value: 'dpdash' }, + ]) + ) + }) +}) diff --git a/views/forms/AdminUsersSearchForm/index.jsx b/views/forms/AdminUsersSearchForm/index.jsx new file mode 100644 index 00000000..5df5790c --- /dev/null +++ b/views/forms/AdminUsersSearchForm/index.jsx @@ -0,0 +1,48 @@ +import React, { useEffect } from 'react' + +import { yupResolver } from '@hookform/resolvers/yup' +import SearchIcon from '@mui/icons-material/Search' +import { InputAdornment } from '@mui/material' +import { useForm } from 'react-hook-form' +import * as yup from 'yup' + +import ControlledMultiSelect from '../ControlledMultiSelect' + +const schema = yup.object({ + users: yup.array(), +}) + +export const AdminUsersSearchForm = ({ onSubmit, allOptions }) => { + const { handleSubmit, control, formState, watch } = useForm({ + defaultValues: { + users: [], + }, + mode: 'onChange', + resolver: yupResolver(schema), + }) + + const data = watch() + + useEffect(() => { + if (formState.isValid && !formState.isValidating) { + onSubmit(data.users) + } + }, [data, formState]) + + return ( +
+ + + + } + fullWidth + /> + + ) +} diff --git a/views/forms/BarChartFields/BarChartFields.css b/views/forms/BarChartFields/BarChartFields.css new file mode 100644 index 00000000..6a723b5b --- /dev/null +++ b/views/forms/BarChartFields/BarChartFields.css @@ -0,0 +1,24 @@ +.BarChartFieldsValueLabel { + display: flex; + flex-direction: column; + padding-bottom: 20px; + padding-top: 20px; +} +.BarChartFieldsTargetValues { + display: flex; + align-items: center; +} +.BarChartFieldsAddTargets { + padding-top: 20px; +} +@media screen and (max-width: 800px) { + .BarChartFieldsValueLabel { + width: auto; + } +} + +@media screen and (min-width: 900px) { + .BarChartFieldsValueLabel { + width: 50%; + } +} diff --git a/views/forms/BarChartFields/index.jsx b/views/forms/BarChartFields/index.jsx new file mode 100644 index 00000000..7c6c8618 --- /dev/null +++ b/views/forms/BarChartFields/index.jsx @@ -0,0 +1,134 @@ +import React from 'react' + +import Delete from '@mui/icons-material/Delete' +import { Button, Typography } from '@mui/material' + +import { presetColors } from '../../../constants' +import ColorPicker from '../../components/ColorPicker/' +import ControlledCheckbox from '../ControlledCheckbox' +import TextInput from '../TextInput' + +import './BarChartFields.css' + +const BarChartFields = ({ + control, + fields, + onRemove, + onAddNewFields, + fieldsValue, +}) => { + return ( + <> + + + + +
+ +
+ {fields.map((field, index) => { + const { id, targetValues } = field + return ( + +
+ +
+
+ + +
+ + + Targets + + {Object.keys(targetValues).map((study, idx) => ( +
+ + {study} + + +
+ ))} + + ) + })} +
+ +
+ + ) +} + +export default BarChartFields diff --git a/views/forms/ChartFilterForm/ChartFilterForm.css b/views/forms/ChartFilterForm/ChartFilterForm.css new file mode 100644 index 00000000..d916c222 --- /dev/null +++ b/views/forms/ChartFilterForm/ChartFilterForm.css @@ -0,0 +1,35 @@ +.ChartFilterForm { + display: grid; + width: 100%; + gap: 10px; + padding-bottom: 20px; + grid-template-columns: repeat(1fr, 4); + grid-template-rows: auto; +} +.ChartFilterForm_container { + display: flex; + padding-left: 15px; +} +.ChartFilterForm_text { + margin-top: 0; + margin-bottom: 0; + text-indent: 15px; +} +.ChartFilterForm_nested { + padding: 0; +} +.ChartFilterForm_submit { + padding-top: 20px; + width: 158px; + padding-left: 15px; +} + +@media screen and (max-width: 1040px) { + .ChartFilterForm { + display: flex; + flex-direction: column; + width: 100%; + gap: 20px; + padding-bottom: 20px; + } +} diff --git a/views/forms/ChartFilterForm/ChartFilterForm.test.jsx b/views/forms/ChartFilterForm/ChartFilterForm.test.jsx new file mode 100644 index 00000000..0d83afc7 --- /dev/null +++ b/views/forms/ChartFilterForm/ChartFilterForm.test.jsx @@ -0,0 +1,120 @@ +import React from 'react' + +import { render, screen, waitFor } from '@testing-library/react' +import userEvent from '@testing-library/user-event' + +import ChartFilterForm from '.' +import { SITES_BY_NETWORK } from '../../../constants' + +describe('Chart Filter Form', () => { + const defaultInitialValues = { + chrcrit_part: { + HC: { label: 'HC', value: 0 }, + CHR: { label: 'CHR', value: 0 }, + Missing: { label: 'Missing', value: 0 }, + }, + recruitment_status: { + Recruited: { label: 'Recruited', value: 0 }, + 'Not recruited': { label: 'Not Recruited', value: 0 }, + }, + sex_at_birth: { + Male: { label: 'Male', value: 0 }, + Female: { label: 'Female', value: 0 }, + Missing: { label: 'Missing', value: 0 }, + }, + sites: { + CA: { label: 'CA', value: 1 }, + LA: { label: 'LA', value: 1 }, + MA: { label: 'MA', value: 0 }, + ME: { label: 'ME', value: 0 }, + }, + networks: { + PRESCIENT: { label: 'PRESCIENT', value: 0 }, + ProNET: { label: 'ProNET', value: 0 }, + }, + } + + const defaultProps = { + initialValues: defaultInitialValues, + onSubmit: () => {}, + } + + const elements = { + form: () => screen.getByTestId('filter_form'), + clearButton: () => screen.getByRole('button', { name: 'Clear' }), + sitesFilters: () => screen.getByRole('textbox', { name: 'sites' }), + cohortFilters: () => screen.getByLabelText('Cohort'), + recruitmentFilters: () => screen.getByLabelText('Recruitment Status'), + networkFilters: () => screen.getByLabelText('Networks'), + getFilterElement: (name) => screen.getByText(name), + } + + const renderForm = (props = defaultProps) => { + return render() + } + + test('calls the onSubmit prop when the form is submitted with valid data', async () => { + const onSubmit = jest.fn() + + renderForm({ ...defaultProps, onSubmit }) + + const cohortElement = elements.cohortFilters() + const recruitmentFilterElement = elements.recruitmentFilters() + + await userEvent.click(cohortElement) + await userEvent.click(elements.getFilterElement('HC')) + await userEvent.click(recruitmentFilterElement) + await userEvent.click(elements.getFilterElement('Recruited')) + await userEvent.keyboard('{Escape}') + + await waitFor(() => + expect(onSubmit).toHaveBeenCalledWith( + { + chrcrit_part: ['HC'], + recruitment_status: ['Recruited'], + networks: [], + sex_at_birth: [], + sites: ['CA', 'LA'], + }, + expect.anything() + ) + ) + }) + + test('updates the available sites when a network is selected', async () => { + const prescient = 'PRESCIENT' + const onSubmit = jest.fn() + + const props = { + ...defaultProps, + onSubmit, + } + + renderForm(props) + + const networksElement = elements.networkFilters() + + await userEvent.click(networksElement) + await userEvent.click(elements.getFilterElement(prescient)) + await userEvent.keyboard('{Escape}') + + const prescientSites = screen.queryByDisplayValue( + SITES_BY_NETWORK[prescient].join(',') + ) + + expect(prescientSites).toBeInTheDocument() + + await waitFor(() => { + expect(onSubmit).toHaveBeenCalledWith( + { + chrcrit_part: [], + recruitment_status: [], + networks: [prescient], + sex_at_birth: [], + sites: SITES_BY_NETWORK[prescient], + }, + expect.anything() + ) + }) + }) +}) diff --git a/views/forms/ChartFilterForm/index.jsx b/views/forms/ChartFilterForm/index.jsx new file mode 100644 index 00000000..4cc8403a --- /dev/null +++ b/views/forms/ChartFilterForm/index.jsx @@ -0,0 +1,85 @@ +import React, { useEffect } from 'react' + +import { FormControl, InputLabel } from '@mui/material' +import { useForm } from 'react-hook-form' + +import { + SITES_BY_NETWORK, + NETWORKS_FILTER_KEY, + SITES_FILTER_KEY, + FILTER_CATEGORIES, +} from '../../../constants' +import { ChartFiltersModel } from '../../models' +import DropdownCheckboxGroup from '../DropdownCheckboxGroup' + +import './ChartFilterForm.css' + +const ChartFilterForm = ({ initialValues, onSubmit }) => { + const { handleSubmit, setValue, watch, control } = useForm({ + defaultValues: ChartFiltersModel.filtersToFormValues(initialValues), + }) + const handleClear = (filterField) => setValue(filterField, []) + const handleSelectAll = (filterField) => { + const allFilterValues = Object.values(initialValues[filterField]).map( + ({ label }) => label + ) + return setValue(filterField, allFilterValues) + } + + useEffect(() => { + const subscription = watch((value, { name }) => { + if (name === NETWORKS_FILTER_KEY) { + const sitesUnion = [ + ...new Set( + value[NETWORKS_FILTER_KEY].reduce((siteList, network) => { + return siteList.concat(SITES_BY_NETWORK[network]) + }, []) + ), + ] + + setValue(SITES_FILTER_KEY, sitesUnion) + } + }) + return () => subscription.unsubscribe() + }, [watch]) + + return ( +
+
+ {Object.keys(initialValues).map((filterKey, i) => { + const columnStart = (i % 4) + 1 + const row = Math.trunc(i / 4) + 1 + + return ( + + + {FILTER_CATEGORIES[filterKey]} + + + + ) + })} +
+ + ) +} + +export default ChartFilterForm diff --git a/views/forms/ChartForm.jsx b/views/forms/ChartForm.jsx new file mode 100644 index 00000000..5e36dca8 --- /dev/null +++ b/views/forms/ChartForm.jsx @@ -0,0 +1,62 @@ +import React from 'react' + +import { yupResolver } from '@hookform/resolvers/yup' +import Button from '@mui/material/Button' +import { useForm } from 'react-hook-form' +import * as yup from 'yup' + +import BarChartFields from './BarChartFields' +import { colors } from '../../constants' +import { targetValuesFields } from '../fe-utils/targetValuesUtil' +import useArrayFormFields from '../hooks/useArrayFormFields' + +const schema = yup.object({ + title: yup.string().required(), + description: yup.string().required(), + assessment: yup.string().required(), + variable: yup.string().required(), + public: yup.boolean(), + fieldLabelValueMap: yup.array().of( + yup.object({ + value: yup.string(), + label: yup.string(), + color: yup.string(), + targetValues: yup.object(), + }) + ), +}) + +const ChartForm = ({ onSubmit, user, initialValues }) => { + const { handleSubmit, control, watch } = useForm({ + defaultValues: initialValues, + resolver: yupResolver(schema), + }) + const { fields, addNewField, removeField } = useArrayFormFields({ + control, + name: 'fieldLabelValueMap', + defaultFieldValue: { + value: '', + label: '', + color: colors.dark_sky_blue, + targetValues: targetValuesFields(user.access), + }, + }) + return ( +
+ +
+ +
+ + ) +} + +export default ChartForm diff --git a/views/forms/ChartShareForm/ChartShareForm.test.jsx b/views/forms/ChartShareForm/ChartShareForm.test.jsx new file mode 100644 index 00000000..5bcaa887 --- /dev/null +++ b/views/forms/ChartShareForm/ChartShareForm.test.jsx @@ -0,0 +1,157 @@ +import React from 'react' + +import { render, screen, waitFor, fireEvent } from '@testing-library/react' +import userEvent from '@testing-library/user-event' + +import ChartShareForm from '.' +import { createChart } from '../../../test/fixtures' + +jest.mock('react-hook-form', () => ({ + ...jest.requireActual('react-hook-form'), + useController: () => jest.fn().mockReturnValue({ field: {} }), + control: {}, +})) + +beforeEach(() => { + jest.resetAllMocks() +}) +describe(ChartShareForm, () => { + const defaultProps = { + chartToShare: {}, + closeDialog: jest.fn(), + shareWithUsers: jest.fn(), + sharedWithOptions: [], + shareFormControl: jest.fn().mockReturnValue({ field: {} }), + shareFormValues: { + sharedWith: [], + }, + clearSelectedUsers: jest.fn(), + selectAllUsers: jest.fn(), + } + + const elements = { + dialogs: () => screen.queryAllByRole('dialog'), + dialog: () => screen.findByRole('dialog'), + combobox: () => screen.getByRole('combobox'), + checkbox: async () => { + const checkboxes = await screen.findAllByRole('checkbox') + return checkboxes[0] + }, + submitButton: () => screen.getByTestId('submit'), + cancelButton: () => screen.getByTestId('cancel'), + clearButton: () => screen.getByRole('button', { name: 'CLEAR' }), + selectAllButton: () => screen.getByRole('button', { name: 'SELECT ALL' }), + } + + describe('when the chart to share is empty', () => { + it('does not show the dialog', async () => { + render() + + expect(await elements.dialogs()).toEqual([]) + }) + }) + + describe('when the chart to share is populated', () => { + const chartToShare = createChart() + const selectedUser = { + value: 'alice', + label: 'Alice', + } + + const sharedWithOptions = [ + selectedUser, + { value: 'bob', label: 'Bob' }, + { value: 'cody', label: 'Cody' }, + ] + it('shows the dialog', async () => { + render( + + ) + + await waitFor(async () => { + expect(await elements.dialog()).toBeInTheDocument() + }) + }) + it('allows the user to select other users to share the chart with', async () => { + render( + + ) + + await waitFor(async () => + expect(await elements.dialog()).toBeInTheDocument() + ) + + await userEvent.click(elements.combobox()) + + await waitFor(async () => { + expect(await elements.checkbox()).toBeInTheDocument() + }) + + await userEvent.click(await elements.checkbox()) + fireEvent.submit(await elements.submitButton()) + + await waitFor(async () => { + expect(defaultProps.shareWithUsers).toHaveBeenCalled() + }) + }) + + it('allows the user to clear all selected users', async () => { + render( + + ) + + await waitFor(async () => + expect(await elements.dialog()).toBeInTheDocument() + ) + + await userEvent.click(elements.combobox()) + + await waitFor(async () => { + expect(await elements.checkbox()).toBeInTheDocument() + }) + + await userEvent.click(await elements.clearButton()) + + await waitFor(async () => { + expect(defaultProps.clearSelectedUsers).toHaveBeenCalled() + }) + }) + it('allows the user to select all users', async () => { + render( + + ) + + await waitFor(async () => + expect(await elements.dialog()).toBeInTheDocument() + ) + + await userEvent.click(elements.combobox()) + + await waitFor(async () => { + expect(await elements.checkbox()).toBeInTheDocument() + }) + + await userEvent.click(await elements.selectAllButton()) + + await waitFor(async () => { + expect(defaultProps.selectAllUsers).toHaveBeenCalled() + }) + }) + }) +}) diff --git a/views/forms/ChartShareForm/index.jsx b/views/forms/ChartShareForm/index.jsx new file mode 100644 index 00000000..29325fc0 --- /dev/null +++ b/views/forms/ChartShareForm/index.jsx @@ -0,0 +1,77 @@ +import React from 'react' + +import { + Button, + CardActions, + Dialog, + DialogTitle, + DialogContent, + DialogActions, +} from '@mui/material' + +import SearchSelect from '../../components/SearchSelect' + +const ChartShareForm = ({ + chartToShare, + closeDialog, + shareWithUsers, + sharedWithOptions, + shareFormControl, + shareFormValues, + clearSelectedUsers, + selectAllUsers, +}) => { + return ( + + Share Chart {chartToShare.title}? + + + + + + + } + /> + + + + + + + ) +} + +export default ChartShareForm diff --git a/views/forms/ChartsSearchForm/index.jsx b/views/forms/ChartsSearchForm/index.jsx new file mode 100644 index 00000000..7e274ba2 --- /dev/null +++ b/views/forms/ChartsSearchForm/index.jsx @@ -0,0 +1,44 @@ +import React from 'react' + +import { yupResolver } from '@hookform/resolvers/yup' +import SearchIcon from '@mui/icons-material/Search' +import { InputAdornment } from '@mui/material' +import debounce from 'debounce' +import { useForm } from 'react-hook-form' +import * as yup from 'yup' + +import TextInput from '../TextInput' + +const schema = yup.object({ + search: yup.string(), +}) + +const ChartsSearchForm = ({ initialValues, onSubmit }) => { + const { handleSubmit, control } = useForm({ + defaultValues: initialValues, + resolver: yupResolver(schema), + }) + + return ( +
+ + + + } + fullWidth + onChange={debounce( + (e) => onSubmit({ [e.target.name]: e.target.value }), + 500 + )} + InputProps={{ autoComplete: 'off' }} + /> + + ) +} + +export default ChartsSearchForm diff --git a/views/forms/ConfigAssessmentFormFields/ConfigAssessmentFormFields.css b/views/forms/ConfigAssessmentFormFields/ConfigAssessmentFormFields.css new file mode 100644 index 00000000..d8095507 --- /dev/null +++ b/views/forms/ConfigAssessmentFormFields/ConfigAssessmentFormFields.css @@ -0,0 +1,12 @@ +.ColorPaletteDropdown { + display: table; + width: 100%; +} +.ColorPaletteBlock { + width: 20px; + height: 20px; + display: table-cell; +} +.RangeFields { + display: 'flex'; +} diff --git a/views/forms/ConfigAssessmentFormFields/index.jsx b/views/forms/ConfigAssessmentFormFields/index.jsx new file mode 100644 index 00000000..2b5c9a02 --- /dev/null +++ b/views/forms/ConfigAssessmentFormFields/index.jsx @@ -0,0 +1,104 @@ +import React from 'react' + +import { VisibilityOffOutlined, Visibility } from '@mui/icons-material' +import { MenuItem } from '@mui/material' + +import ConfigurationCategoryCard from '../../components/ConfigurationCategoryCard' +import ControlledCheckbox from '../ControlledCheckbox' +import ControlledSelectInput from '../ControlledSelect' +import PredictiveInputSelect from '../PredictiveInputSelect' +import TextInput from '../TextInput' +import './ConfigAssessmentFormFields.css' + +const ConfigAssessmentFormFields = ({ + control, + colors, + index, + id, + onCopy, + onRemove, + assessmentOptions, + handleAssessmentSearch, + handleClearAssessments, +}) => { + return ( + + + + + + + {colors.map(({ value, label }, colorsIndex) => ( + +
+ {label.map((palette) => ( + + ))} +
+ + ))} + +
+ + +
+ } + checkedIcon={} + labelprops={{}} + /> + + ) +} + +export default ConfigAssessmentFormFields diff --git a/views/forms/ConfigFields/ConfigFields.css b/views/forms/ConfigFields/ConfigFields.css new file mode 100644 index 00000000..edc0c924 --- /dev/null +++ b/views/forms/ConfigFields/ConfigFields.css @@ -0,0 +1,6 @@ +.ConfigFields { + display: flex; + gap: 10px; + flex-flow: wrap; + padding-top: 40px; +} diff --git a/views/forms/ConfigFields/index.jsx b/views/forms/ConfigFields/index.jsx new file mode 100644 index 00000000..b81dbffa --- /dev/null +++ b/views/forms/ConfigFields/index.jsx @@ -0,0 +1,54 @@ +import React from 'react' + +import ConfigAssessmentFormFields from '../ConfigAssessmentFormFields' +import ConfigTypeFormFields from '../ConfigTypeFormFields' + +import './ConfigFields.css' + +const ConfigFormFields = ({ + control, + colors, + fields, + friendsList, + onCopy, + onRemove, + assessmentOptions, + handleAssessmentSearch, + handleClearAssessments, + handleClearUsers, + handleSelectAllUsers, +}) => { + return ( + <> + +
+ {fields.map((field, index) => { + const { id, ...rest } = field + + return ( + + ) + })} +
+ + ) +} + +export default ConfigFormFields diff --git a/views/forms/ConfigForm/ConfigForm.css b/views/forms/ConfigForm/ConfigForm.css new file mode 100644 index 00000000..754ea4c1 --- /dev/null +++ b/views/forms/ConfigForm/ConfigForm.css @@ -0,0 +1,17 @@ +.ConfigFormActions { + position: fixed; + bottom: 0; + right: 0; + border: 0; + padding: 24px; + display: grid; + grid-template-columns: repeat(1fr, 3); + gap: 10px; + font-size: 12px; +} + +@media screen and (min-width: 1000px) { + .ConfigForm { + padding-top: 40px; + } +} diff --git a/views/forms/ConfigForm/ConfigForm.test.jsx b/views/forms/ConfigForm/ConfigForm.test.jsx new file mode 100644 index 00000000..883faa84 --- /dev/null +++ b/views/forms/ConfigForm/ConfigForm.test.jsx @@ -0,0 +1,91 @@ +import React from 'react' + +import { render, screen, waitFor } from '@testing-library/react' +import userEvent from '@testing-library/user-event' + +import ConfigForm from '.' +import { colorList } from '../../fe-utils/colorList' +import { UserConfigModel } from '../../models' + +describe('ConfigForm', () => { + const defaultProps = { + colors: colorList(), + friendsList: [ + { label: 'user 1', value: 'user 1' }, + { label: 'user 2', value: 'user 2' }, + ], + initialValues: UserConfigModel.defaultFormValues({ + readers: [], + owner: 'user 1', + }), + handleClearAssessments: () => {}, + handleAssessmentSearch: () => {}, + handleSubmitDraft: () => {}, + onSubmit: () => {}, + } + const elements = { + configNameInput: () => + screen.getByRole('textbox', { name: 'Configuration name' }), + description: () => + screen.getByRole('textbox', { name: 'Description (Optional)' }), + submitAsDraft: () => screen.getByText('Save as draft'), + publishConfig: () => screen.getByText('Publish'), + makePublic: () => screen.getByRole('checkbox', { name: 'public' }), + } + const renderForm = (props = defaultProps) => { + return render() + } + + it('calls the onSubmit prop when the form is submitted with valid data', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { ...defaultProps, onSubmit } + + renderForm(props) + await user.type(elements.configNameInput(), 'my config') + await user.type(elements.description(), 'description') + await user.click(elements.makePublic()) + + await user.click(elements.publishConfig()) + + await waitFor(() => + expect(onSubmit).toHaveBeenCalledWith( + { + config: [], + configName: 'my config', + configType: 'matrix', + description: 'description', + owner: 'user 1', + public: true, + readers: [], + }, + expect.anything() + ) + ) + }) + it('calls the save as draft prop when the form is saved as a draft configuration', async () => { + const user = userEvent.setup() + const handleSubmitDraft = jest.fn() + const props = { ...defaultProps, handleSubmitDraft } + + renderForm(props) + await user.type(elements.configNameInput(), 'draft config') + await user.type(elements.description(), 'draft') + await user.click(elements.submitAsDraft()) + + await waitFor(() => + expect(handleSubmitDraft).toHaveBeenCalledWith( + { + config: [], + configName: 'draft config', + configType: 'matrix', + description: 'draft', + owner: 'user 1', + public: false, + readers: [], + }, + expect.anything() + ) + ) + }) +}) diff --git a/views/forms/ConfigForm/index.jsx b/views/forms/ConfigForm/index.jsx new file mode 100644 index 00000000..e23522e6 --- /dev/null +++ b/views/forms/ConfigForm/index.jsx @@ -0,0 +1,133 @@ +import React from 'react' + +import { yupResolver } from '@hookform/resolvers/yup' +import { Button } from '@mui/material' +import { useForm } from 'react-hook-form' +import * as yup from 'yup' + +import useArrayFormFields from '../../hooks/useArrayFormFields' +import { UserConfigModel } from '../../models' +import ConfigFormFields from '../ConfigFields' +import './ConfigForm.css' + +const schema = yup.object({ + configName: yup.string().required(), + configType: yup.string().required(), + description: yup.string(), + readers: yup.array().of( + yup.object({ + value: yup.string(), + label: yup.string(), + isFixed: yup.boolean(), + }) + ), + public: yup.boolean(), + owner: yup.string().required(), + config: yup.array().of( + yup.object({ + category: yup.string(), + analysis: yup.string(), + variable: yup.string(), + label: yup.string(), + color: yup.number(), + min: yup.string(), + max: yup.string(), + text: yup.boolean(), + }) + ), + status: yup.number(), +}) + +const ConfigForm = ({ + colors, + friendsList, + initialValues, + onSubmit, + assessmentOptions, + handleClearAssessments, + handleAssessmentSearch, + handleSubmitDraft, +}) => { + const defaultFieldValue = UserConfigModel.defaultConfigValues + + const { handleSubmit, control, getValues, setValue } = useForm({ + defaultValues: initialValues, + resolver: yupResolver(schema), + }) + const { fields, addNewField, removeField } = useArrayFormFields({ + control, + name: 'config', + defaultFieldValue, + }) + const onCopy = (configCategoryIndex) => + addNewField(getValues(`config[${configCategoryIndex}]`)) + const handleClearUsers = () => setValue('readers', []) + const handleSelectAllUsers = () => setValue('readers', friendsList) + + return ( +
+ +
+ + + +
+ + ) +} + +export default ConfigForm diff --git a/views/forms/ConfigTypeFormFields/ConfigTypeFormFields.css b/views/forms/ConfigTypeFormFields/ConfigTypeFormFields.css new file mode 100644 index 00000000..8fc10acd --- /dev/null +++ b/views/forms/ConfigTypeFormFields/ConfigTypeFormFields.css @@ -0,0 +1,41 @@ +.ConfigTypeFormFields { + display: grid; + grid-template-columns: 1fr 1fr; + grid-template-areas: + 'name type' + 'description share'; + grid-gap: 10%; +} +.ConfigTypeShareContainer { + display: flex; + grid-area: share; + flex-direction: column; +} +.ConfigTypeShareHeader { + display: grid; + grid-template-columns: 1fr 1fr; + grid-template-areas: 'share_label make_public'; +} + +@media screen and (max-width: 1100px) { + .ConfigTypeFormFields { + display: grid; + grid-template-columns: 1fr; + grid-template-areas: + 'name' + 'type' + 'description' + 'share'; + grid-gap: 15px; + } +} + +@media screen and (max-width: 600px) { + .ConfigTypeShareHeader { + display: grid; + grid-template-columns: 1fr; + grid-template-areas: + 'make_public' + 'share_label'; + } +} diff --git a/views/forms/ConfigTypeFormFields/index.jsx b/views/forms/ConfigTypeFormFields/index.jsx new file mode 100644 index 00000000..720fbf04 --- /dev/null +++ b/views/forms/ConfigTypeFormFields/index.jsx @@ -0,0 +1,111 @@ +import React from 'react' + +import { FormHelperText, InputLabel } from '@mui/material' + +import { fontSize, lineHeight } from '../../../constants' +import ControlledCheckbox from '../ControlledCheckbox' +import ControlledMultiSelect from '../ControlledMultiSelect' +import TextInput from '../TextInput' + +import './ConfigTypeFormFields.css' + +const textInputStyles = { + color: 'text.primary', + fontWeight: 500, + lineHeight: lineHeight[21], + fontSize: fontSize[18], + mt: '-10px', +} +const textInputProps = { notched: false } +const inputLabelProps = { shrink: true, sx: textInputStyles } + +const ConfigTypeFormFields = (props) => { + const { control, friendsList, handleClearUsers, handleSelectAllUsers } = props + + return ( +
+ + + +
+
+ + Share with + + +
+ + + Added users will have view only access to this configuration. + +
+
+ ) +} + +export default ConfigTypeFormFields diff --git a/views/forms/ControlledCheckbox/index.jsx b/views/forms/ControlledCheckbox/index.jsx new file mode 100644 index 00000000..9a62bd27 --- /dev/null +++ b/views/forms/ControlledCheckbox/index.jsx @@ -0,0 +1,64 @@ +import React from 'react' + +import { Checkbox, FormControlLabel } from '@mui/material' +import { Controller } from 'react-hook-form' + +const ControlledCheckbox = ({ + name, + control, + onChange, + checked, + label, + ...props +}) => { + return label ? ( + ( + { + field.onChange(e) + if (onChange) onChange(e) + }} + inputProps={{ name, 'aria-label': name }} + checked={ + !checked && typeof field.value === 'boolean' + ? field.value + : checked + } + /> + )} + /> + } + label={label} + labelPlacement={props.labelplacement || 'start'} + sx={props.labelprops.sx || {}} + /> + ) : ( + ( + { + field.onChange(e) + if (onChange) onChange(e) + }} + inputProps={{ name, 'aria-label': name }} + defaultChecked={ + !checked && typeof field.value === 'boolean' ? field.value : checked + } + /> + )} + /> + ) +} + +export default ControlledCheckbox diff --git a/views/forms/ControlledMultiSelect/ControlledMultiSelect.test.jsx b/views/forms/ControlledMultiSelect/ControlledMultiSelect.test.jsx new file mode 100644 index 00000000..cea5e44c --- /dev/null +++ b/views/forms/ControlledMultiSelect/ControlledMultiSelect.test.jsx @@ -0,0 +1,138 @@ +import React from 'react' + +import { render, screen, waitFor } from '@testing-library/react' +import userEvent from '@testing-library/user-event' +import { useForm } from 'react-hook-form' + +import ControlledMultiSelect from '.' + +describe('Controlled Multi Select', () => { + const defaultComponentProps = { + label: 'Input label', + name: 'field_name', + options: [ + { label: 'One', value: '1' }, + { label: 'Two', value: '2' }, + { label: 'Three', value: '3' }, + ], + } + const defaultProps = { + initialValues: { field_name: [] }, + onSubmit: () => {}, + componentProps: defaultComponentProps, + } + const elements = { + autoComplete: () => screen.getByRole('combobox', { name: 'Input label' }), + submitBtn: () => screen.getByRole('button', { name: 'submit' }), + } + const FormWrapper = (props) => { + const { control, handleSubmit } = useForm({ + defaultValues: props.initialValues, + }) + + return ( +
+ + + + + ) + } + const renderComponent = (props = defaultProps) => { + render() + } + + test('allows selecting a new option', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { ...defaultProps, onSubmit } + + renderComponent(props) + const textbox = elements.autoComplete() + await userEvent.type(textbox, 'o') + await userEvent.click(await screen.findByText('One')) + await userEvent.type(textbox, 't') + await userEvent.click(await screen.findByText('Two')) + await user.click(elements.submitBtn()) + + await waitFor(() => + expect(onSubmit).toHaveBeenCalledWith( + { + field_name: [ + defaultComponentProps.options[0], + defaultComponentProps.options[1], + ], + }, + expect.anything() + ) + ) + }) + + test('removing an existing option', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { + ...defaultProps, + initialValues: { + field_name: [ + defaultComponentProps.options[1], + defaultComponentProps.options[2], + ], + }, + onSubmit, + } + + renderComponent(props) + await userEvent.type(elements.autoComplete(), '{backspace}') + await user.click(elements.submitBtn()) + + await waitFor(() => + expect(onSubmit).toHaveBeenCalledWith( + { + field_name: [defaultComponentProps.options[1]], + }, + expect.anything() + ) + ) + }) + + test('fixed value remains after input field has been cleared', async () => { + const user = userEvent.setup() + + const onSubmit = jest.fn() + const defaultComponentPropsWithStaticOption = { + label: 'Input label', + name: 'field_name', + options: [ + { label: 'One', value: '1' }, + { label: 'Two', value: '2' }, + { label: 'Three', value: '3', isFixed: true }, + ], + } + const updatedProps = { + initialValues: { + field_name: [ + { label: 'One', value: '1' }, + { label: 'Two', value: '2' }, + { label: 'Three', value: '3', isFixed: true }, + ], + }, + onSubmit, + componentProps: defaultComponentPropsWithStaticOption, + } + + renderComponent(updatedProps) + await userEvent.click(elements.autoComplete()) + await userEvent.click(screen.getByTitle('Clear')) + await user.click(elements.submitBtn()) + + await waitFor(() => + expect(onSubmit).toHaveBeenCalledWith( + { + field_name: [defaultComponentPropsWithStaticOption.options[2]], + }, + expect.anything() + ) + ) + }) +}) diff --git a/views/forms/ControlledMultiSelect/index.jsx b/views/forms/ControlledMultiSelect/index.jsx new file mode 100644 index 00000000..c2e30388 --- /dev/null +++ b/views/forms/ControlledMultiSelect/index.jsx @@ -0,0 +1,47 @@ +import React from 'react' + +import { Controller } from 'react-hook-form' + +import { MultiSelect } from '../MultiSelect' + +const ControlledMultiSelect = (props) => { + const onChange = (value, reason, field) => { + switch (reason) { + case 'clear': + value = field.value.filter(({ isFixed }) => isFixed) + + return field.onChange(value) + case 'removeOption': { + const optionToRemove = field.value.filter( + (prevOption) => + !value.find( + (currentOption) => currentOption.value === prevOption.value + ) + ) + if (!optionToRemove[0]?.isFixed) { + field.onChange(value) + } + break + } + default: + return field.onChange(value) + } + } + + return ( + ( + + )} + /> + ) +} + +export default ControlledMultiSelect diff --git a/views/forms/ControlledReactSelect/components.js b/views/forms/ControlledReactSelect/components.js new file mode 100644 index 00000000..fc5ea898 --- /dev/null +++ b/views/forms/ControlledReactSelect/components.js @@ -0,0 +1,49 @@ +import CancelIcon from '@mui/icons-material/Cancel' +import { Chip, MenuItem, Typography, TextField } from '@mui/material' + +export const components = { + MultiValue: (props) => ( + } + /> + ), + Option: (props) => ( + + {props.children} + + ), + NoOptionsMessage: (props) => ( + + {props.children} + + ), + Control: (props) => ( + + ), + Placeholder: (props) => ( + + {props.children} + + ), + SingleValue: (props) => ( + {props.children} + ), +} diff --git a/views/forms/ControlledReactSelect/index.jsx b/views/forms/ControlledReactSelect/index.jsx new file mode 100644 index 00000000..db20d9d4 --- /dev/null +++ b/views/forms/ControlledReactSelect/index.jsx @@ -0,0 +1,47 @@ +import { useContext } from 'react' + +import { useController } from 'react-hook-form' +import Select from 'react-select' + +import { components } from './components' +import { NotificationContext } from '../../contexts' + +const ControlledReactSelect = (props) => { + const { field } = useController(props) + const [, setNotification] = useContext(NotificationContext) + + const onChange = (options, actionMeta, field) => { + switch (actionMeta.action) { + case 'remove-value': + case 'pop-value': + if (actionMeta.removedValue.isFixed) { + setNotification({ + open: true, + message: `${actionMeta.removedValue.value} cannot be removed`, + }) + + return + } + break + case 'clear': + options = field.value.filter(({ isFixed }) => isFixed) + field.onChange(options) + + break + } + + field.onChange(options) + } + + return ( + + } + renderValue={(selected) => { + const EtcChip = + selected.length > 5 ? : <> + + return selected + .slice(0, 5) + .map((value) => ) + .concat([EtcChip]) + }} + onClose={onClose} + MenuProps={MenuProps} + fullWidth={false} + > + {options.map(({ label }) => { + return ( + + {label} + + ) + })} + + + + + + ) +} +export default DropdownCheckboxGroup diff --git a/views/forms/MultiSelect/MultiSelect.css b/views/forms/MultiSelect/MultiSelect.css new file mode 100644 index 00000000..970458ed --- /dev/null +++ b/views/forms/MultiSelect/MultiSelect.css @@ -0,0 +1,5 @@ +.MultiSelectActions { + width: 100%; + display: flex; + justify-content: space-between; +} diff --git a/views/forms/MultiSelect/MultiSelect.test.jsx b/views/forms/MultiSelect/MultiSelect.test.jsx new file mode 100644 index 00000000..6d6278ac --- /dev/null +++ b/views/forms/MultiSelect/MultiSelect.test.jsx @@ -0,0 +1,83 @@ +import React, { useState } from 'react' + +import { render, screen, waitFor } from '@testing-library/react' +import userEvent from '@testing-library/user-event' + +import { MultiSelect } from '.' + +describe('Controlled Multi Select', () => { + const defaultComponentProps = { + label: 'Input label', + name: 'field_name', + options: [ + { label: 'One', value: '1' }, + { label: 'Two', value: '2' }, + { label: 'Three', value: '3' }, + ], + } + const defaultProps = { + initialValues: [], + onChange: () => {}, + componentProps: defaultComponentProps, + } + const elements = { + autoComplete: () => screen.getByRole('combobox', { name: 'Input label' }), + } + const FormWrapper = (props) => { + const [value, setValue] = useState(props.initialValues) + + return ( +
+ { + setValue(v) + props.onChange(v) + }} + {...props.componentProps} + /> + + ) + } + const renderComponent = (props = defaultProps) => { + render() + } + + test('allows selecting a new option', async () => { + const onChange = jest.fn() + const props = { ...defaultProps, onChange } + + renderComponent(props) + const textbox = elements.autoComplete() + await userEvent.type(textbox, 'o') + await userEvent.click(await screen.findByText('One')) + await userEvent.type(textbox, 't') + await userEvent.click(await screen.findByText('Two')) + + await waitFor(() => + expect(onChange).toHaveBeenLastCalledWith([ + defaultComponentProps.options[0], + defaultComponentProps.options[1], + ]) + ) + }) + + test('removing an existing option', async () => { + const onChange = jest.fn() + const props = { + ...defaultProps, + initialValues: [ + defaultComponentProps.options[1], + defaultComponentProps.options[2], + ], + onChange, + } + + renderComponent(props) + await userEvent.type(elements.autoComplete(), '{backspace}') + + await waitFor(() => + expect(onChange).toHaveBeenCalledWith([defaultComponentProps.options[1]]) + ) + }) +}) diff --git a/views/forms/MultiSelect/MultiSelectActions.jsx b/views/forms/MultiSelect/MultiSelectActions.jsx new file mode 100644 index 00000000..3e5483c3 --- /dev/null +++ b/views/forms/MultiSelect/MultiSelectActions.jsx @@ -0,0 +1,29 @@ +import { Paper, Button } from '@mui/material' + +import './MultiSelect.css' + +const MultiSelectFooterActions = ({ + children, + onClear, + onSelectAll, + ...rest +}) => { + // Prevent input blur which triggers closing the menu + const preventClosingThePopup = (e) => e.preventDefault() + + return ( + + {children} +
+ + +
+ + ) +} + +export default MultiSelectFooterActions diff --git a/views/forms/MultiSelect/index.jsx b/views/forms/MultiSelect/index.jsx new file mode 100644 index 00000000..bd3ecfe5 --- /dev/null +++ b/views/forms/MultiSelect/index.jsx @@ -0,0 +1,59 @@ +import React from 'react' + +import { Autocomplete, Chip, TextField } from '@mui/material' + +import MultiSelectFooterActions from './MultiSelectActions' + +export const MultiSelect = (props) => { + const { field, fieldState } = props + + return ( + option.isFixed} + isOptionEqualToValue={(option, value) => option.value === value.value} + multiple + onChange={(_, data, reason) => props.onChange(data, reason, field)} + options={props.options} + renderTags={(tagValue, getTagProps) => + tagValue.map((option, index) => ( + + )) + } + renderInput={(params) => ( + + {props.startAdornment} + {params.InputProps.startAdornment} + + ), + }} + placeholder={props.placeholder} + /> + )} + value={props.value || field.value} + sx={props.sx || {}} + componentsProps={{ + paper: { + onClear: props.onClear || {}, + onSelectAll: props.onSelectAll || {}, + }, + }} + PaperComponent={props.displayActions ? MultiSelectFooterActions : null} + /> + ) +} diff --git a/views/forms/ParticipantsSearchForm/ParticipantsSearchForm.css b/views/forms/ParticipantsSearchForm/ParticipantsSearchForm.css new file mode 100644 index 00000000..afa5a1cb --- /dev/null +++ b/views/forms/ParticipantsSearchForm/ParticipantsSearchForm.css @@ -0,0 +1,12 @@ +.ParticipantsSearchForm { + display: flex; + gap: 16px; + align-items: center; +} + +@media screen and (max-width: 1100px) { + .ParticipantsSearchForm { + flex-direction: column; + align-items: normal; + } +} diff --git a/views/forms/ParticipantsSearchForm/index.jsx b/views/forms/ParticipantsSearchForm/index.jsx new file mode 100644 index 00000000..d27ea47d --- /dev/null +++ b/views/forms/ParticipantsSearchForm/index.jsx @@ -0,0 +1,100 @@ +import React, { useEffect } from 'react' + +import { yupResolver } from '@hookform/resolvers/yup' +import { Search } from '@mui/icons-material' +import { InputAdornment, MenuItem, Button, CardActions } from '@mui/material' +import { useForm } from 'react-hook-form' +import * as yup from 'yup' + +import SearchSelect from '../../components/SearchSelect' +import ControlledMultiSelect from '../ControlledMultiSelect' +import ControlledSelectInput from '../ControlledSelect' + +import './ParticipantsSearchForm.css' + +const schema = yup.object({ + participants: yup.array(), + studies: yup.array(), + status: yup.number(), +}) + +const ParticipantsSearchForm = ({ initialValues, onSubmit, allOptions }) => { + const { handleSubmit, control, watch, setValue, getValues } = useForm({ + defaultValues: initialValues, + mode: 'onChange', + resolver: yupResolver(schema), + }) + const formValues = getValues() + + const handleClear = () => setValue('studies', []) + const handleSelectAll = () => + setValue( + 'studies', + allOptions.studies.map(({ value }) => value) + ) + + useEffect(() => { + const subscription = watch((value) => onSubmit(value)) + + return () => subscription.unsubscribe() + }, [watch]) + return ( +
+
+ + + + } + sx={{ flexBasis: 1, flexGrow: 5 }} + /> + + + + + } + /> + + All + Active + Inactive + +
+ + ) +} + +export default ParticipantsSearchForm diff --git a/views/forms/PredictiveInputSelect/index.jsx b/views/forms/PredictiveInputSelect/index.jsx new file mode 100644 index 00000000..0f1aead2 --- /dev/null +++ b/views/forms/PredictiveInputSelect/index.jsx @@ -0,0 +1,48 @@ +import React from 'react' + +import { Autocomplete, TextField } from '@mui/material' +import { useController } from 'react-hook-form' + +const PredictiveInputSelect = ({ control, options, name, ...rest }) => { + const { field } = useController({ name, control }) + + return ( + { + if (rest.onBlur) rest.onBlur(e) + + field.onBlur(e) + }} + onChange={(e, selectedValue) => { + if (rest.onChange) rest.onChange(e) + + field.onChange(selectedValue) + }} + renderInput={(params) => ( + { + if (rest.onChange) rest.onChange(e) + + field.onChange(e.target.value) + }} + onBlur={(e) => { + if (rest.onBlur) rest.onBlur(e) + + field.onBlur(e) + }} + /> + )} + /> + ) +} + +export default PredictiveInputSelect diff --git a/views/forms/RegisterForm/RegisterForm.test.jsx b/views/forms/RegisterForm/RegisterForm.test.jsx new file mode 100644 index 00000000..458886c4 --- /dev/null +++ b/views/forms/RegisterForm/RegisterForm.test.jsx @@ -0,0 +1,103 @@ +import React from 'react' + +import { render, screen, waitFor } from '@testing-library/react' +import userEvent from '@testing-library/user-event' + +import RegisterForm from '.' + +describe('Register Form', () => { + const defaultProps = { + initialValues: { + username: '', + password: '', + confirmPassword: '', + fullName: '', + mail: '', + }, + onSubmit: () => {}, + } + const elements = { + usernameField: () => screen.getByRole('textbox', { name: 'Username' }), + passwordField: () => screen.getByTestId('pw'), + confirmPasswordField: () => screen.getByTestId('confirm-pw'), + fullNameField: () => screen.getByRole('textbox', { name: 'Full Name' }), + emailField: () => screen.getByRole('textbox', { name: 'Email' }), + signUpBtn: () => screen.getByText('Sign up'), + } + const renderForm = (props = defaultProps) => { + render() + } + + test('calls the onSubmit prop when the form is submitted with valid data', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { ...defaultProps, onSubmit } + + renderForm(props) + await user.type(elements.usernameField(), 'myUsername') + await user.type(elements.passwordField(), 'myPassword') + await user.type(elements.confirmPasswordField(), 'myPassword') + await user.type(elements.fullNameField(), 'Joe Schmoe') + await user.type(elements.emailField(), 'joe@example.test') + await user.click(elements.signUpBtn()) + + await waitFor(() => + expect(onSubmit).toHaveBeenCalledWith( + { + username: 'myUsername', + password: 'myPassword', + confirmPassword: 'myPassword', + fullName: 'Joe Schmoe', + mail: 'joe@example.test', + }, + expect.anything() + ) + ) + }) + + test('displays errors and does not submit the form with invalid data', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { ...defaultProps, onSubmit } + + renderForm(props) + await user.type(elements.usernameField(), 'myUsername') + await user.type(elements.passwordField(), 'nope') + await user.type(elements.confirmPasswordField(), 'nope') + await user.type(elements.fullNameField(), 'Joe Schmoe') + await user.type(elements.emailField(), 'not-an-email') + await user.click(elements.signUpBtn()) + + await waitFor(() => + expect( + screen.getByText('password must be at least 8 characters') + ).toBeInTheDocument() + ) + expect(screen.getByText('mail must be a valid email')).toBeInTheDocument() + + expect(onSubmit).not.toHaveBeenCalled() + }) + + test('displays errors and does not submit the form with unmatched passwords', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { ...defaultProps, onSubmit } + + renderForm(props) + await user.type(elements.usernameField(), 'myUsername') + await user.type(elements.passwordField(), 'thisIsMyPassword') + await user.type( + elements.confirmPasswordField(), + 'thisIsMyConfirmedPassword' + ) + await user.type(elements.fullNameField(), 'Joe Schmoe') + await user.type(elements.emailField(), 'joe@example.test') + await user.click(elements.signUpBtn()) + + await waitFor(() => + expect(screen.getByText('passwords do not match')).toBeInTheDocument() + ) + + expect(onSubmit).not.toHaveBeenCalled() + }) +}) diff --git a/views/forms/RegisterForm/index.jsx b/views/forms/RegisterForm/index.jsx new file mode 100644 index 00000000..067ed52b --- /dev/null +++ b/views/forms/RegisterForm/index.jsx @@ -0,0 +1,93 @@ +import { yupResolver } from '@hookform/resolvers/yup' +import { Button } from '@mui/material' +import { useForm } from 'react-hook-form' +import * as yup from 'yup' + +import TextInput from '../TextInput' + +const schema = yup.object({ + username: yup.string().required(), + password: yup.string().min(8).required(), + confirmPassword: yup + .string() + .oneOf([yup.ref('password'), null], 'passwords do not match'), + fullName: yup.string().required(), + mail: yup.string().email().required(), +}) + +const RegistrationForm = ({ initialValues, onSubmit }) => { + const { + handleSubmit, + control, + formState: { errors }, + } = useForm({ + defaultValues: initialValues, + resolver: yupResolver(schema), + }) + + return ( +
+ + + + + + + + + ) +} + +export default RegistrationForm diff --git a/views/forms/ResetPasswordForm/ResetPasswordForm.test.jsx b/views/forms/ResetPasswordForm/ResetPasswordForm.test.jsx new file mode 100644 index 00000000..0cfdb82d --- /dev/null +++ b/views/forms/ResetPasswordForm/ResetPasswordForm.test.jsx @@ -0,0 +1,109 @@ +import React from 'react' + +import { render, screen, waitFor } from '@testing-library/react' +import userEvent from '@testing-library/user-event' + +import ResetPasswordForm from '.' + +describe('Reset Password Form', () => { + const defaultProps = { + initialValues: { + username: '', + password: '', + confirmPassword: '', + reset_key: '', + }, + onCancel: () => {}, + onSubmit: () => {}, + } + const elements = { + usernameField: () => screen.getByRole('textbox', { name: 'Username' }), + passwordField: () => screen.getByTestId('pw'), + confirmPasswordField: () => screen.getByTestId('confirm-pw'), + resetKeyField: () => screen.getByRole('textbox', { name: 'Reset Key' }), + cancelBtn: () => screen.getByText('Cancel'), + submitBtn: () => screen.getByText('Submit'), + } + const renderForm = (props = defaultProps) => { + render() + } + + test('calls the onSubmit prop when the form is submitted with valid data', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { ...defaultProps, onSubmit } + + renderForm(props) + await user.type(elements.usernameField(), 'myUsername') + await user.type(elements.passwordField(), 'myPassword') + await user.type(elements.confirmPasswordField(), 'myPassword') + await user.type(elements.resetKeyField(), 'myResetKey') + await user.click(elements.submitBtn()) + + await waitFor(() => + expect(onSubmit).toHaveBeenCalledWith( + { + username: 'myUsername', + password: 'myPassword', + confirmPassword: 'myPassword', + reset_key: 'myResetKey', + }, + expect.anything() + ) + ) + }) + + test('displays errors and does not submit the form with invalid data', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { ...defaultProps, onSubmit } + + renderForm(props) + await user.type(elements.usernameField(), 'myUsername') + await user.type(elements.passwordField(), 'nope') + await user.type(elements.confirmPasswordField(), 'nope') + await user.type(elements.resetKeyField(), 'myResetKey') + await user.click(elements.submitBtn()) + + await waitFor(() => + expect( + screen.getByText('password must be at least 8 characters') + ).toBeInTheDocument() + ) + + expect(onSubmit).not.toHaveBeenCalled() + }) + + test('displays errors and does not submit the form with unmatched passwords', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { ...defaultProps, onSubmit } + + renderForm(props) + await user.type(elements.usernameField(), 'myUsername') + await user.type(elements.passwordField(), 'thisIsMyPassword') + await user.type( + elements.confirmPasswordField(), + 'thisIsMyConfirmedPassword' + ) + await user.type(elements.resetKeyField(), 'myResetKey') + await user.click(elements.submitBtn()) + + await waitFor(() => + expect(screen.getByText('passwords do not match')).toBeInTheDocument() + ) + + expect(onSubmit).not.toHaveBeenCalled() + }) + + test('calls the onCancel prop when the cancel button is clicked', async () => { + const user = userEvent.setup() + const onCancel = jest.fn() + const props = { ...defaultProps, onCancel } + + renderForm(props) + await user.click(elements.cancelBtn()) + + await waitFor(() => expect(onCancel).toHaveBeenCalledWith()) + }) +}) diff --git a/views/forms/ResetPasswordForm/index.jsx b/views/forms/ResetPasswordForm/index.jsx new file mode 100644 index 00000000..c7bd682e --- /dev/null +++ b/views/forms/ResetPasswordForm/index.jsx @@ -0,0 +1,81 @@ +import { yupResolver } from '@hookform/resolvers/yup' +import { Button } from '@mui/material' +import { useForm } from 'react-hook-form' +import * as yup from 'yup' + +import TextInput from '../TextInput' + +const schema = yup.object({ + username: yup.string().required(), + password: yup.string().required().min(8), + confirmPassword: yup + .string() + .oneOf([yup.ref('password'), null], 'passwords do not match'), + reset_key: yup.string().required(), +}) + +const ResetPasswordForm = ({ initialValues, onCancel, onSubmit }) => { + const { + handleSubmit, + control, + formState: { errors }, + } = useForm({ + defaultValues: initialValues, + resolver: yupResolver(schema), + }) + return ( +
+ + + + + +
+ + +
+ + ) +} + +export default ResetPasswordForm diff --git a/views/forms/SelectConfigurationsForm/SelectConfigurationsForm.test.jsx b/views/forms/SelectConfigurationsForm/SelectConfigurationsForm.test.jsx new file mode 100644 index 00000000..cb79bdda --- /dev/null +++ b/views/forms/SelectConfigurationsForm/SelectConfigurationsForm.test.jsx @@ -0,0 +1,57 @@ +import React from 'react' + +import { render, screen, waitFor } from '@testing-library/react' +import userEvent from '@testing-library/user-event' + +import SelectConfigurationForm from '.' +import { createConfiguration } from '../../../test/fixtures' + +describe(SelectConfigurationForm, () => { + const defaultInitialValues = { + config: '1', + } + const defaultProps = { + initialValues: defaultInitialValues, + configurations: [], + onSubmit: () => {}, + } + + const elements = { + configurationsDropdown: () => + screen.getByRole('combobox', { name: 'Select configuration' }), + getFilterElement: (name) => screen.getByText(name), + } + const renderForm = (props = defaultProps) => { + return render() + } + + test('calls the onSubmit prop when the form is submitted with valid data', async () => { + const onSubmit = jest.fn() + const configurationsOptions = [ + createConfiguration({ name: 'first config' }), + createConfiguration({ _id: '2', name: 'second config' }), + createConfiguration({ _id: '3', name: 'third configuration' }), + ] + + renderForm({ + ...defaultProps, + configurations: configurationsOptions, + onSubmit, + }) + + const configurations = elements.configurationsDropdown() + + await userEvent.click(configurations) + await userEvent.click(elements.getFilterElement('third configuration')) + await userEvent.keyboard('{Escape}') + + await waitFor(() => + expect(onSubmit).toHaveBeenCalledWith( + { + config: '3', + }, + expect.anything() + ) + ) + }) +}) diff --git a/views/forms/SelectConfigurationsForm/index.jsx b/views/forms/SelectConfigurationsForm/index.jsx new file mode 100644 index 00000000..20eacaca --- /dev/null +++ b/views/forms/SelectConfigurationsForm/index.jsx @@ -0,0 +1,41 @@ +import React from 'react' + +import { yupResolver } from '@hookform/resolvers/yup' +import { MenuItem } from '@mui/material' +import { useForm } from 'react-hook-form' +import * as yup from 'yup' + +import ControlledSelect from '../ControlledSelect' + +const schema = yup.object({ + config: yup.string().required(), +}) +const SelectConfigurationsForm = ({ + configurations, + onSubmit, + initialValues, +}) => { + const { handleSubmit, control } = useForm({ + defaultValues: initialValues, + resolver: yupResolver(schema), + }) + + return ( +
+ + {configurations.map((configuration) => ( + + {configuration.name} + + ))} + + + ) +} + +export default SelectConfigurationsForm diff --git a/views/forms/ShareConfigurationForm/index.jsx b/views/forms/ShareConfigurationForm/index.jsx new file mode 100644 index 00000000..99294644 --- /dev/null +++ b/views/forms/ShareConfigurationForm/index.jsx @@ -0,0 +1,60 @@ +import React, { useEffect } from 'react' + +import { yupResolver } from '@hookform/resolvers/yup' +import { + Button, + Dialog, + DialogTitle, + DialogContent, + DialogActions, + Typography, +} from '@mui/material' +import { useForm } from 'react-hook-form' +import { object, array } from 'yup' + +import ControlledMultiSelect from '../ControlledMultiSelect' + +const schema = object().shape({ + readers: array(), +}) + +const ShareConfigurationForm = ({ + onClose, + onSubmit, + open, + options, + title, + initialValues, +}) => { + const { control, reset, handleSubmit } = useForm({ + resolver: yupResolver(schema), + }) + useEffect(() => { + reset(initialValues) + }, [initialValues]) + + return ( + + + {title} + + +
+ + + , + + + + + + ) +} + +export default ShareConfigurationForm diff --git a/views/forms/SignInForm/SignInForm.css b/views/forms/SignInForm/SignInForm.css new file mode 100644 index 00000000..f7e4bf53 --- /dev/null +++ b/views/forms/SignInForm/SignInForm.css @@ -0,0 +1,7 @@ +.SignInForm_submitBtnContainer { + margin-top: 8px; +} +.SignInForm_button { + border-radius: 8px; + text-transform: none; +} diff --git a/views/forms/SignInForm/SignInForm.test.jsx b/views/forms/SignInForm/SignInForm.test.jsx new file mode 100644 index 00000000..8de48a6d --- /dev/null +++ b/views/forms/SignInForm/SignInForm.test.jsx @@ -0,0 +1,53 @@ +import React from 'react' + +import { render, screen, waitFor } from '@testing-library/react' +import userEvent from '@testing-library/user-event' + +import SignInForm from '.' + +describe('Sign In Form', () => { + const defaultProps = { + initialValues: { + username: '', + password: '', + }, + onSubmit: () => {}, + } + const elements = { + usernameField: () => screen.getByRole('textbox', { name: 'Username' }), + passwordField: () => screen.getByTestId('pw'), + submitBtn: () => screen.getByText('Sign in'), + } + const renderForm = (props = defaultProps) => { + render() + } + + test('renders the text inputs and submit button', () => { + renderForm() + + expect(elements.usernameField()).toBeInTheDocument() + expect(elements.passwordField()).toBeInTheDocument() + expect(elements.submitBtn()).toBeInTheDocument() + }) + + test('calls the onSubmit prop when the form is submitted', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { ...defaultProps, onSubmit } + + renderForm(props) + await user.type(elements.usernameField(), 'myUsername') + await user.type(elements.passwordField(), 'myPassword') + await user.click(elements.submitBtn()) + + await waitFor(() => + expect(onSubmit).toHaveBeenCalledWith( + { + username: 'myUsername', + password: 'myPassword', + }, + expect.anything() + ) + ) + }) +}) diff --git a/views/forms/SignInForm/index.jsx b/views/forms/SignInForm/index.jsx new file mode 100644 index 00000000..81a187f1 --- /dev/null +++ b/views/forms/SignInForm/index.jsx @@ -0,0 +1,66 @@ +import React from 'react' + +import { yupResolver } from '@hookform/resolvers/yup' +import { Button } from '@mui/material' +import { useForm } from 'react-hook-form' +import * as yup from 'yup' + +import TextInput from '../TextInput' +import './SignInForm.css' + +const schema = yup.object({ + username: yup.string().required(), + password: yup.string().min(8).required(), +}) + +const SignInForm = ({ initialValues, onSubmit }) => { + const { + control, + handleSubmit, + formState: { errors }, + } = useForm({ + defaultValues: initialValues, + resolver: yupResolver(schema), + }) + + return ( +
+ + +
+ +
+ + ) +} + +export default SignInForm diff --git a/views/forms/TextInput/index.jsx b/views/forms/TextInput/index.jsx new file mode 100644 index 00000000..4f9b0df3 --- /dev/null +++ b/views/forms/TextInput/index.jsx @@ -0,0 +1,36 @@ +import React from 'react' + +import TextField from '@mui/material/TextField' +import { useController } from 'react-hook-form' + +const TextInput = (props) => { + const { errors } = props + const { field } = useController(props) + + return ( + { + props.onChange?.(e) + + field.onChange(e) + }} + /> + ) +} + +export default TextInput diff --git a/views/forms/TextInputTopLabel/TextInputTopLabel.test.jsx b/views/forms/TextInputTopLabel/TextInputTopLabel.test.jsx new file mode 100644 index 00000000..f7ff2154 --- /dev/null +++ b/views/forms/TextInputTopLabel/TextInputTopLabel.test.jsx @@ -0,0 +1,40 @@ +import React from 'react' + +import { render, screen } from '@testing-library/react' + +import TextInputTopLabel from '.' + +jest.mock('react-hook-form', () => ({ + ...jest.requireActual('react-hook-form'), + useController: jest.fn().mockReturnValue({ + field: { value: 'testValue', onChange: jest.fn() }, + formState: { + errors: { 'text-field': { message: 'This field is required' } }, + }, + }), +})) + +describe('TextInputTopLabel', () => { + test('renders TextInputTopLabel component', () => { + render() + + const inputElement = screen.getByRole('textbox', { + name: 'text-field-label', + }) + + expect(inputElement).toBeInTheDocument() + }) + + test('renders TextInputTopLabel component with error message', () => { + render() + + const inputElement = screen.getByRole('textbox', { + name: 'text-field-label', + }) + const errorMessageElement = screen.getByLabelText('text-field-error') + + expect(inputElement).toBeInTheDocument() + expect(errorMessageElement).toBeInTheDocument() + expect(errorMessageElement).toHaveTextContent('This field is required') + }) +}) diff --git a/views/forms/TextInputTopLabel/index.jsx b/views/forms/TextInputTopLabel/index.jsx new file mode 100644 index 00000000..d35020ef --- /dev/null +++ b/views/forms/TextInputTopLabel/index.jsx @@ -0,0 +1,58 @@ +import React from 'react' + +import { InputLabel, FormHelperText, OutlinedInput } from '@mui/material/' +import { useController } from 'react-hook-form' + +import { lineHeight, fontSize, borderRadius } from '../../../constants' + +const TextInputTopLabel = (props) => { + const { + field, + formState: { errors }, + } = useController(props) + + return ( + <> + + {props.label} + + + {!!errors[props.name] && ( + + {errors[props.name].message} + + )} + + ) +} + +export default TextInputTopLabel diff --git a/views/forms/UserPriviligeFormFields/UserPriviligeFields.css b/views/forms/UserPriviligeFormFields/UserPriviligeFields.css new file mode 100644 index 00000000..c34f0614 --- /dev/null +++ b/views/forms/UserPriviligeFormFields/UserPriviligeFields.css @@ -0,0 +1,6 @@ +.subheader { + padding: '0px'; +} +.divider { + border-bottom: '1px solid #d3d3d3'; +} diff --git a/views/forms/UserPriviligeFormFields/index.jsx b/views/forms/UserPriviligeFormFields/index.jsx new file mode 100644 index 00000000..f514df2b --- /dev/null +++ b/views/forms/UserPriviligeFormFields/index.jsx @@ -0,0 +1,62 @@ +import { Button, DialogActions, MenuItem, NoSsr } from '@mui/material' +import Subheader from '@mui/material/ListSubheader' + +import { ROLE_OPTIONS } from '../../../constants' +import Modal from '../../components/Modal' +import ControlledReactSelect from '../ControlledReactSelect' +import { components } from '../ControlledReactSelect/components' +import ControlledSelectInput from '../ControlledSelect' +import './UserPriviligeFields.css' + +const UserPriviligeFields = ({ + currentRowIndex, + control, + options, + open, + onClose, + onUpdateUser, +}) => { + return ( + + Membership Level + + {ROLE_OPTIONS.map(({ value, label }) => ( + + {label} + + ))} + +
+ Viewable Studies + + + +
+ + + + + + ) +} + +export default UserPriviligeFields diff --git a/views/forms/UserProfileForm/UserProfileForm.test.jsx b/views/forms/UserProfileForm/UserProfileForm.test.jsx new file mode 100644 index 00000000..d08c57d2 --- /dev/null +++ b/views/forms/UserProfileForm/UserProfileForm.test.jsx @@ -0,0 +1,83 @@ +import React from 'react' + +import { render, screen, waitFor } from '@testing-library/react' +import userEvent from '@testing-library/user-event' + +import UserProfileForm from '.' + +describe('User Profile Form', () => { + const pngFile = new File(['hello'], 'hello.png', { type: 'image/png' }) + const defaultProps = { + initialValues: { + display_name: '', + mail: 'myEmail@example.test', + title: '', + iconFile: pngFile, + }, + onCancel: () => {}, + onSubmit: () => {}, + } + const elements = { + displayNameField: () => screen.getByRole('textbox', { name: 'Full name' }), + emailField: () => screen.getByRole('textbox', { name: 'Email' }), + titleField: () => + screen.getByRole('textbox', { name: 'Title and institution (optional)' }), + iconField: () => screen.getByTestId('icon-input'), + submitBtn: () => screen.getByText('Save changes'), + } + const renderForm = (props = defaultProps) => { + render() + } + + test('email field should be disabled', () => { + renderForm({ ...defaultProps }) + + expect(elements.emailField()).toBeDisabled() + }) + + test('calls the onSubmit prop when the form is submitted with valid data', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { + ...defaultProps, + onSubmit, + } + + renderForm(props) + await user.type(elements.displayNameField(), 'My Full Name') + await user.type(elements.titleField(), 'My Title') + await user.upload(elements.iconField(), pngFile) + await user.click(elements.submitBtn()) + + await waitFor(() => + expect(onSubmit).toHaveBeenCalledWith( + { + display_name: 'My Full Name', + mail: 'myEmail@example.test', + title: 'My Title', + iconFile: pngFile, + }, + expect.anything() + ) + ) + }) + + test('displays errors and does not submit the form with invalid data', async () => { + const user = userEvent.setup() + const onSubmit = jest.fn() + const props = { ...defaultProps, onSubmit } + + renderForm(props) + await user.type(elements.displayNameField(), 'My name') + await user.clear(elements.displayNameField()) + await user.click(elements.submitBtn()) + + await waitFor(() => { + expect( + screen.getByText('display_name is a required field') + ).toBeInTheDocument() + }) + + expect(onSubmit).not.toHaveBeenCalled() + }) +}) diff --git a/views/forms/UserProfileForm/UserProfileFormFields.css b/views/forms/UserProfileForm/UserProfileFormFields.css new file mode 100644 index 00000000..9af28b52 --- /dev/null +++ b/views/forms/UserProfileForm/UserProfileFormFields.css @@ -0,0 +1,3 @@ +.UserProfileFormInputs_box { + max-width: 502px; +} diff --git a/views/forms/UserProfileForm/UserProfileFormFields.jsx b/views/forms/UserProfileForm/UserProfileFormFields.jsx new file mode 100644 index 00000000..13db7c8c --- /dev/null +++ b/views/forms/UserProfileForm/UserProfileFormFields.jsx @@ -0,0 +1,46 @@ +import React from 'react' + +import TextInputTopLabel from '../TextInputTopLabel' + +import './UserProfileFormFields.css' + +const UserProfileFormFields = ({ control }) => { + return ( +
+ + + +
+ ) +} + +export default UserProfileFormFields diff --git a/views/forms/UserProfileForm/UserProfileImage.css b/views/forms/UserProfileForm/UserProfileImage.css new file mode 100644 index 00000000..b958dafd --- /dev/null +++ b/views/forms/UserProfileForm/UserProfileImage.css @@ -0,0 +1,15 @@ +.UserProfileForm_profileImage { + display: flex; + align-items: center; + padding: 24px 0px; +} +.UserProfileFormFileUploadInput { + display: none; +} +.UserProfileFormAlert { + max-width: 502px; + padding-bottom: 24px; +} +.UserProfileFormFileInfo { + padding-right: 14px; +} diff --git a/views/forms/UserProfileForm/UserProfileImage.jsx b/views/forms/UserProfileForm/UserProfileImage.jsx new file mode 100644 index 00000000..d99af909 --- /dev/null +++ b/views/forms/UserProfileForm/UserProfileImage.jsx @@ -0,0 +1,100 @@ +import React from 'react' + +import { Delete, Image } from '@mui/icons-material' +import { Avatar, Typography, Alert, IconButton } from '@mui/material' +import { Controller } from 'react-hook-form' + +import { fontSize } from '../../../constants' + +import './UserProfileImage.css' + +const UserProfileImage = ({ + control, + iconFileName, + fileInputRef, + onRemoveIcon, + iconSrc, +}) => { + return ( + <> +
+ + + + Upload Profile Photo + + { + return ( + { + fileInputRef.current = inputRef + field.ref(inputRef) + }} + onChange={(event) => { + const { files } = event.target + if (files[0]) { + field.onChange(files[0]) + } + }} + /> + ) + }} + /> +
+ {iconFileName && ( +
+ onRemoveIcon()} + sx={{ color: 'text.secondary' }} + > + + + } + sx={{ + display: 'flex', + flexDirection: 'row-reverse', + justifyContent: 'space-between', + alignItems: 'center', + color: 'black.A100', + }} + > + + + + {iconFileName} + +
+ )} + + ) +} + +export default UserProfileImage diff --git a/views/forms/UserProfileForm/UserProfileImage.test.jsx b/views/forms/UserProfileForm/UserProfileImage.test.jsx new file mode 100644 index 00000000..c62c9f14 --- /dev/null +++ b/views/forms/UserProfileForm/UserProfileImage.test.jsx @@ -0,0 +1,31 @@ +import React from 'react' + +import { render, screen } from '@testing-library/react' + +import UserProfileImage from './UserProfileImage' + +jest.mock('react-hook-form') + +describe('UserProfileImage', () => { + test('renders profile image', () => { + render( + + ) + const iconFileImage = screen.getByAltText('User avatar') + const iconFileName = screen.getByText('myProfileImage.jpeg') + + expect(iconFileImage).toBeInTheDocument() + expect(iconFileName).toBeInTheDocument() + }) + + test('renders an icon when no profile image', () => { + render() + const profileIcon = screen.getByTestId('PersonIcon') + + expect(profileIcon).toBeInTheDocument() + }) +}) diff --git a/views/forms/UserProfileForm/index.jsx b/views/forms/UserProfileForm/index.jsx new file mode 100644 index 00000000..6e4566c7 --- /dev/null +++ b/views/forms/UserProfileForm/index.jsx @@ -0,0 +1,82 @@ +import React, { useEffect, useRef, useState } from 'react' + +import { yupResolver } from '@hookform/resolvers/yup' +import { Button } from '@mui/material' +import { useForm } from 'react-hook-form' +import * as yup from 'yup' + +import UserProfileFormFields from './UserProfileFormFields' +import UserProfileImage from './UserProfileImage' +import { borderRadius } from '../../../constants' +import { FileModel } from '../../models' + +const schema = yup.object({ + company: yup.string(), + department: yup.string(), + display_name: yup.string().required(), + icon: yup.string(), + mail: yup.string().email(), + title: yup.string(), +}) + +const UserProfileForm = ({ initialValues, onSubmit }) => { + const { handleSubmit, control, watch, setValue } = useForm({ + defaultValues: initialValues, + resolver: yupResolver(schema), + mode: 'onChange', + }) + const fileInput = useRef() + const iconFile = watch('iconFile') + const [iconSrc, setIconSrc] = useState() + const [iconName, setIconName] = useState() + + useEffect(() => { + if (iconFile) { + setIconName(iconFile.name) + FileModel.toDataURL(iconFile).then(setIconSrc) + } else { + setIconSrc(undefined) + } + }, [iconFile]) + + const onRemoveIcon = () => { + setValue('iconFileName', '') + setValue('iconFile', null) + setIconName('') + + fileInput.current.value = '' + } + return ( + <> +
+ + +
+ +
+ + + ) +} + +export default UserProfileForm diff --git a/views/forms/UserResetKeyFormFields/UserResetKeyFields.css b/views/forms/UserResetKeyFormFields/UserResetKeyFields.css new file mode 100644 index 00000000..1b62bd7a --- /dev/null +++ b/views/forms/UserResetKeyFormFields/UserResetKeyFields.css @@ -0,0 +1,3 @@ +.subheader { + padding: '0px'; +} diff --git a/views/forms/UserResetKeyFormFields/index.jsx b/views/forms/UserResetKeyFormFields/index.jsx new file mode 100644 index 00000000..f23731ef --- /dev/null +++ b/views/forms/UserResetKeyFormFields/index.jsx @@ -0,0 +1,19 @@ +import Subheader from '@mui/material/ListSubheader' + +import Modal from '../../components/Modal' +import './UserResetKeyFields.css' + +const UserResetKeyFields = ({ open, onClose, resetKey }) => { + return ( + + {resetKey} + + ) +} + +export default UserResetKeyFields diff --git a/views/hoc/AuthenticatedRoute.jsx b/views/hoc/AuthenticatedRoute.jsx new file mode 100644 index 00000000..606d9c35 --- /dev/null +++ b/views/hoc/AuthenticatedRoute.jsx @@ -0,0 +1,29 @@ +import React, { useContext, useEffect } from 'react' + +import { useNavigate } from 'react-router-dom' + +import api from '../api' +import { AuthContext } from '../contexts/AuthContext' +import { routes } from '../routes/routes' + +const AuthenticatedRoute = ({ children }) => { + const navigate = useNavigate() + const [user, setUser] = useContext(AuthContext) + + const fetchUser = async () => { + try { + const currentUser = await api.auth.me() + setUser(currentUser) + } catch { + navigate(routes.signin) + } + } + + useEffect(() => { + if (!user) fetchUser() + }, []) + + return user ? children :
Loading...
+} + +export default AuthenticatedRoute diff --git a/views/hooks/useArrayFormFields.jsx b/views/hooks/useArrayFormFields.jsx new file mode 100644 index 00000000..f8d6c927 --- /dev/null +++ b/views/hooks/useArrayFormFields.jsx @@ -0,0 +1,16 @@ +import { useFieldArray } from 'react-hook-form' + +function useArrayFormFields({ control, name, defaultFieldValue }) { + const { fields, append, remove } = useFieldArray({ control, name }) + const addNewField = (fieldValues) => append(fieldValues || defaultFieldValue) + + const removeField = (fieldIndex) => remove(fieldIndex) + + return { + fields, + addNewField, + removeField, + } +} + +export default useArrayFormFields diff --git a/views/hooks/useChartsList.jsx b/views/hooks/useChartsList.jsx new file mode 100644 index 00000000..506a0835 --- /dev/null +++ b/views/hooks/useChartsList.jsx @@ -0,0 +1,173 @@ +import { useState, useEffect } from 'react' + +import { useForm } from 'react-hook-form' +import { useOutletContext } from 'react-router-dom' + +import useTableSort from './useTableSort' +import api from '../api' + +const NULL_CHART = {} +const title = 'title' + +export default function useChartsList() { + const { setNotification, setUser, user, users } = useOutletContext() + const { onSort, sortDirection, sortBy } = useTableSort(title) + + const { uid, favoriteCharts } = user + const favoriteChartsSet = new Set(favoriteCharts) + + const [chartToShare, setChartToShare] = useState(NULL_CHART) + const [chartList, setChartList] = useState([]) + const [sharedWithOptions, setSharedWithOptions] = useState([]) + + const { + handleSubmit, + control: shareFormControl, + reset, + watch, + getValues, + } = useForm({ + defaultValues: { + chart_id: chartToShare._id, + sharedWith: chartToShare.sharedWith || [], + }, + }) + const [shareFormValues, setShareFormValues] = useState(getValues()) + + useEffect(() => { + const subscription = watch((value) => { + setShareFormValues(value) + }) + + return () => subscription.unsubscribe() + }, [watch, setShareFormValues]) + + const closeDialog = () => setChartToShare(NULL_CHART) + const onShare = (chart) => { + setChartToShare(chart) + reset({ + chart_id: chart._id, + sharedWith: chart.sharedWith, + }) + } + const clearSelectedUsers = () => { + reset({ + chart_id: chartToShare._id, + sharedWith: [], + }) + } + const selectAllUsers = () => { + reset({ + chart_id: chartToShare._id, + sharedWith: sharedWithOptions.map(({ value }) => value), + }) + } + const shareWithUsers = handleSubmit(async ({ chart_id, sharedWith }) => { + try { + await api.charts.chartsShare.create(chart_id, sharedWith) + + const updatedChart = { ...chartToShare, sharedWith } + const updatedChartList = chartList.map((chart) => + chart._id === updatedChart._id ? updatedChart : chart + ) + + setChartList(updatedChartList) + setChartToShare(NULL_CHART) + setNotification({ open: true, message: 'Shared chart with user' }) + } catch (error) { + setNotification({ open: true, message: error.message }) + } + }) + const onDelete = async (chart) => { + try { + await api.charts.chart.destroy(chart._id) + + await loadCharts() + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + const onDuplicate = async (chart) => { + try { + await api.charts.chartsDuplicate.create(chart._id) + + await loadCharts() + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + const onFavorite = async (chart) => { + try { + const isChartInSet = favoriteChartsSet.has(chart._id) + + if (isChartInSet) { + favoriteChartsSet.delete(chart._id) + } else { + favoriteChartsSet.add(chart._id) + } + + const updatedUser = await api.users.update(uid, { + ...user, + favoriteCharts: Array.from(favoriteChartsSet), + }) + + setUser(updatedUser) + + await loadCharts() + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + const loadCharts = async (queryParams) => { + try { + const params = { + ...(queryParams ? queryParams : {}), + ...(sortBy ? { sortBy } : {}), + ...(sortDirection ? { sortDirection } : {}), + } + const data = await api.charts.chart.all(params) + + setChartList(data) + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + + const handleSearch = async (formData) => await loadCharts(formData) + + useEffect(() => { + loadCharts() + }, [sortBy, sortDirection]) + + useEffect(() => { + const apiUsernames = users + .filter(({ uid }) => uid !== user.uid) + .map(({ uid, display_name }) => ({ + value: uid, + label: display_name, + })) + + setSharedWithOptions(apiUsernames) + }, [users]) + + return { + charts: chartList, + chartToShare, + closeDialog, + handleSearch, + onFavorite, + onShare, + onSort, + onDelete, + onDuplicate, + shareWithUsers, + sortDirection, + sortBy, + user, + sharedWithOptions, + shareFormControl, + shareFormValues, + selectAllUsers, + clearSelectedUsers, + } +} diff --git a/views/hooks/useParticipantsList.jsx b/views/hooks/useParticipantsList.jsx new file mode 100644 index 00000000..6c5ef173 --- /dev/null +++ b/views/hooks/useParticipantsList.jsx @@ -0,0 +1,122 @@ +import React, { useEffect, useState } from 'react' + +import { useOutletContext } from 'react-router-dom' + +import useTableSort from './useTableSort' +import api from '../api' + +const participant = 'participant' + +export default function useParticipantsList() { + const { user, setNotification, setUser } = useOutletContext() + const { onSort, sortDirection, sortBy } = useTableSort(participant) + const { uid, preferences, access } = user + + const [initialLoad, setInitialLoad] = useState(true) + const [loading, setLoading] = useState(true) + const [participants, setParticipants] = useState([]) + const [formFilters, setFormFilters] = useState({ + searchParticipants: [], + studies: [], + status: undefined, + }) + const [searchOptions, setSearchOptions] = useState({ + participants: [], + studies: access.map((study) => ({ label: study, value: study })), + }) + + const fetchParticipants = React.useCallback(async () => { + const sortParams = { + ...(sortBy ? { sortBy } : {}), + ...(sortDirection ? { sortDirection } : {}), + ...(formFilters.searchParticipants?.length + ? { + searchParticipants: normalizeSearchParticipants( + formFilters.searchParticipants + ), + } + : {}), + ...(formFilters?.status || formFilters?.status === 0 + ? { status: formFilters.status } + : {}), + ...(formFilters.studies?.length ? { studies: formFilters.studies } : {}), + } + + return await api.participants.all(sortParams) + }, [sortBy, sortDirection, formFilters]) + + const onStar = async (e) => { + try { + const { name, value } = e.target + const [key, study] = name.split('-') + const values = preferences[key] || {} + + if (values[study]) { + if (values[study].includes(value)) { + values[study] = values[study].filter( + (participant) => participant !== value + ) + } else values[study].push(value) + } else values[study] = [value] + const userAttributes = { + ...user, + preferences: { ...preferences, [key]: values }, + } + const updatedUser = await api.users.update(uid, userAttributes) + const participantsList = await fetchParticipants() + + setUser(updatedUser) + setParticipants(participantsList) + setNotification({ open: true, message: 'User updated successfully.' }) + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + + const handleSearch = async (formData) => { + const { studies, participants, status } = formData + + setFormFilters({ + searchParticipants: participants, + studies, + status, + }) + setLoading(true) + } + + const normalizeSearchParticipants = (searchParticipants) => + searchParticipants.map(({ value }) => value) + + useEffect(() => { + fetchParticipants().then((participantsList) => { + if (initialLoad) { + const dropDownOptions = participantsList.map( + ({ study, participant }) => ({ + value: `${participant}`, + label: `${participant} in ${study}`, + }) + ) + setSearchOptions((prevState) => ({ + ...prevState, + participants: dropDownOptions, + })) + setInitialLoad(false) + } + + setParticipants(participantsList) + setLoading(false) + }) + }, [fetchParticipants, setParticipants, setSearchOptions]) + + return { + formFilters, + handleSearch, + loading, + onStar, + onSort, + participants, + sortDirection, + sortBy, + searchOptions, + } +} diff --git a/views/hooks/useTableSort.jsx b/views/hooks/useTableSort.jsx new file mode 100644 index 00000000..93d9e5e9 --- /dev/null +++ b/views/hooks/useTableSort.jsx @@ -0,0 +1,19 @@ +import { useState } from 'react' + +import { SORT_DIRECTION } from '../../constants' + +export default function useTableSort(initialSortBy) { + const [sortDirection, setDirection] = useState(SORT_DIRECTION.ASC) + const [sortBy, setSortBy] = useState(initialSortBy) + + const onSort = (newSortBy, newSortDirection) => { + if (newSortBy) setSortBy(newSortBy) + if (newSortDirection) setDirection(newSortDirection) + } + + return { + onSort, + sortDirection, + sortBy, + } +} diff --git a/views/hooks/useTableSort.test.jsx b/views/hooks/useTableSort.test.jsx new file mode 100644 index 00000000..03e733f3 --- /dev/null +++ b/views/hooks/useTableSort.test.jsx @@ -0,0 +1,21 @@ +import { renderHook, act } from '@testing-library/react' + +import useTableSort from './useTableSort' + +describe('useTableSort', () => { + it('returns an initial sort direction and sort property', () => { + const { result } = renderHook(() => useTableSort('title')) + + expect(result.current.sortDirection).toBe('ASC') + expect(result.current.sortBy).toBe('title') + }) + it('updates the sort direction and property when onSort is called', () => { + const { result } = renderHook(() => useTableSort('title')) + act(() => { + result.current.onSort('date', 'DESC') + }) + + expect(result.current.sortDirection).toBe('DESC') + expect(result.current.sortBy).toBe('date') + }) +}) diff --git a/views/index.js b/views/index.js new file mode 100644 index 00000000..e8b4165a --- /dev/null +++ b/views/index.js @@ -0,0 +1,8 @@ +import React from 'react' + +import ReactDOM from 'react-dom/client' + +import App from './App' + +const root = ReactDOM.createRoot(document.getElementById('root')) +root.render() diff --git a/views/layouts/HeroLayout/HeroLayout.test.jsx b/views/layouts/HeroLayout/HeroLayout.test.jsx new file mode 100644 index 00000000..3f123457 --- /dev/null +++ b/views/layouts/HeroLayout/HeroLayout.test.jsx @@ -0,0 +1,32 @@ +import React from 'react' + +import { render, screen } from '@testing-library/react' +import { MemoryRouter } from 'react-router-dom' + +import HeroLayout from '.' + +describe('HeroLayout', () => { + beforeEach(() => { + render( + + + + ) + }) + + test('it renders the hero image', () => { + const heroImage = screen.getByRole('img') + + expect(heroImage).toBeInTheDocument() + }) + + test('it renders the hero content description and link', () => { + const heroContent = screen.getByText( + 'DPDash is a Deep/Digital Phenotyping Dashboard designed to manage and visualize multiple data streams coming in continuously over extended periods of time in individuals.' + ) + const learnMoreLink = screen.getByText('Learn More') + + expect(heroContent).toBeInTheDocument() + expect(learnMoreLink).toBeInTheDocument() + }) +}) diff --git a/views/layouts/HeroLayout/index.jsx b/views/layouts/HeroLayout/index.jsx new file mode 100644 index 00000000..278127d6 --- /dev/null +++ b/views/layouts/HeroLayout/index.jsx @@ -0,0 +1,87 @@ +import React from 'react' + +import { Box, Grid } from '@mui/material' +import { Outlet } from 'react-router-dom' + +import HeroCard from '../../components/HeroCard' +import HeroFooter from '../../components/HeroFooter' + +const HeroLayout = () => { + return ( + + + + + + + + + + + + + + ) +} + +export default HeroLayout diff --git a/views/layouts/MainLayout/MainLayout.css b/views/layouts/MainLayout/MainLayout.css new file mode 100644 index 00000000..6bc3a90c --- /dev/null +++ b/views/layouts/MainLayout/MainLayout.css @@ -0,0 +1,18 @@ +.MainLayout_container { + display: flex; +} + +.MainLayout_main { + flex-shrink: 0; + flex: 1; +} +@media screen and (max-width: 900px) { + .MainLayout_main { + margin-top: 50px; + } +} +@media screen and (min-width: 900px) { + .MainLayout_main { + margin-left: 253px; + } +} diff --git a/views/layouts/MainLayout/index.jsx b/views/layouts/MainLayout/index.jsx new file mode 100644 index 00000000..666e0272 --- /dev/null +++ b/views/layouts/MainLayout/index.jsx @@ -0,0 +1,82 @@ +import React, { useState, useEffect, useContext } from 'react' + +import { Menu } from '@mui/icons-material' +import { IconButton, useMediaQuery } from '@mui/material' +import { Outlet, useNavigate } from 'react-router-dom' + +import api from '../../api' +import Sidebar from '../../components/Sidebar' +import { AuthContext, NotificationContext } from '../../contexts' +import { routes } from '../../routes/routes' +import './MainLayout.css' + +const MainLayout = () => { + const isMobile = useMediaQuery('(max-width:900px)') + const [, setNotification] = useContext(NotificationContext) + const [user, setUser] = useContext(AuthContext) + const [users, setUsers] = useState([]) + const [drawerOpen, setDrawerOpen] = useState(false) + const navigate = useNavigate() + const fetchUsers = async () => { + try { + const usersList = await api.users.loadAll() + setUsers(usersList) + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + const handleLogout = async () => { + try { + await api.auth.logout() + + setUser(null) + navigate(routes.signin) + } catch (error) { + alert(error.message) + } + } + const handleDrawerOpen = () => setDrawerOpen(!drawerOpen) + const handleClose = () => setDrawerOpen(false) + + useEffect(() => { + fetchUsers() + }, []) + + return ( +
+ {isMobile && ( + + + + )} + + +
+ +
+
+ ) +} +export default MainLayout diff --git a/views/models/ChartFiltersModel/index.js b/views/models/ChartFiltersModel/index.js new file mode 100644 index 00000000..29cc8146 --- /dev/null +++ b/views/models/ChartFiltersModel/index.js @@ -0,0 +1,33 @@ +const ChartFiltersModel = { + filtersToFormValues: (filters) => { + const filterKeys = Object.keys(filters) + + return filterKeys.reduce((formValues, filterKey) => { + formValues[filterKey] = Object.values(filters[filterKey]) + .filter(({ value }) => value === 1) + .map(({ label }) => label) + + return formValues + }, {}) + }, + formValuesToRequestFilters: (formValues, filters) => { + const filterCategories = Object.keys(filters) + + return filterCategories.reduce((selectedCategories, categoryFields) => { + selectedCategories[categoryFields] = Object.keys( + filters[categoryFields] + ).reduce((selectedFields, fieldKey) => { + selectedFields[fieldKey] = { + label: fieldKey, + value: formValues[categoryFields].includes(fieldKey) ? 1 : 0, + } + + return selectedFields + }, {}) + + return selectedCategories + }, {}) + }, +} + +export default ChartFiltersModel diff --git a/views/models/ChartModel/ChartModel.test.js b/views/models/ChartModel/ChartModel.test.js new file mode 100644 index 00000000..b7d08017 --- /dev/null +++ b/views/models/ChartModel/ChartModel.test.js @@ -0,0 +1,20 @@ +import ChartModel from '.' +import { createChart, createUser } from '../../../test/fixtures' + +describe('ChartModel', () => { + describe(ChartModel.isOwnedByUser, () => { + it('return true when the user owns the chart', () => { + const user = createUser({ uid: 'user' }) + const chart = createChart({ owner: user.uid }) + + expect(ChartModel.isOwnedByUser(chart, user)).toBe(true) + }) + + it('return false when the user does not own the chart', () => { + const user = createUser({ uid: 'user' }) + const chart = createChart({ owner: 'foo' }) + + expect(ChartModel.isOwnedByUser(chart, user)).toBe(false) + }) + }) +}) diff --git a/views/models/ChartModel/index.js b/views/models/ChartModel/index.js new file mode 100644 index 00000000..dd8b3d07 --- /dev/null +++ b/views/models/ChartModel/index.js @@ -0,0 +1,5 @@ +const ChartModel = { + isOwnedByUser: (chart, user) => chart.owner === user.uid, +} + +export default ChartModel diff --git a/views/models/FileModel/index.js b/views/models/FileModel/index.js new file mode 100644 index 00000000..f5641b05 --- /dev/null +++ b/views/models/FileModel/index.js @@ -0,0 +1,26 @@ +const FileModel = { + fromDataURL: (dateURL, fileName) => { + const arr = dateURL.split(','), + mime = arr[0].match(/:(.*?);/)[1], + bstr = atob(arr[arr.length - 1]), + u8arr = new Uint8Array(n) + let n = bstr.length + while (n--) { + u8arr[n] = bstr.charCodeAt(n) + } + return new File([u8arr], fileName, { type: mime }) + }, + toDataURL: async (file) => { + return new Promise((resolve, reject) => { + const reader = new FileReader() + + reader.readAsDataURL(file) + reader.onload = async (e) => { + resolve(e.target.result) + } + reader.onerror = (e) => reject(e) + }) + }, +} + +export default FileModel diff --git a/views/models/StudiesModel/index.js b/views/models/StudiesModel/index.js new file mode 100644 index 00000000..c924dd5c --- /dev/null +++ b/views/models/StudiesModel/index.js @@ -0,0 +1,6 @@ +const StudiesModel = { + dropdownSelectOptions: (studies) => + studies.map((study) => ({ value: study, label: study })), +} + +export default StudiesModel diff --git a/views/models/StudiesModel/studiesModel.test.js b/views/models/StudiesModel/studiesModel.test.js new file mode 100644 index 00000000..1891838b --- /dev/null +++ b/views/models/StudiesModel/studiesModel.test.js @@ -0,0 +1,14 @@ +import StudiesModel from '.' + +describe('Studies Model', () => { + it('Creates a list of options from a list of studies', () => { + const studies = ['study1', 'study2', 'study3'] + const options = StudiesModel.dropdownSelectOptions(studies) + + expect(options).toEqual([ + { value: 'study1', label: 'study1' }, + { value: 'study2', label: 'study2' }, + { value: 'study3', label: 'study3' }, + ]) + }) +}) diff --git a/views/models/UrlModel/index.js b/views/models/UrlModel/index.js new file mode 100644 index 00000000..2bcc2cbf --- /dev/null +++ b/views/models/UrlModel/index.js @@ -0,0 +1,13 @@ +import { SAFE_URL_PATTERN, DATA_URL_PATTERN } from '../../../constants' + +const UrlModel = { + sanitizeUrl: (url) => { + url = String(url) + + if (url.match(SAFE_URL_PATTERN) || url.match(DATA_URL_PATTERN)) return url + + return `data:,Unsafe%20Image` + }, +} + +export default UrlModel diff --git a/views/models/UserConfigModel/UserConfigModel.test.js b/views/models/UserConfigModel/UserConfigModel.test.js new file mode 100644 index 00000000..b2cc8f61 --- /dev/null +++ b/views/models/UserConfigModel/UserConfigModel.test.js @@ -0,0 +1,138 @@ +import UserConfigModel, { findCategoryColor } from '.' +import { createColorList } from '../../../test/fixtures' + +describe('Models - User Config', () => { + const colors = [ + { + value: 221, + label: ['#a6cee3', '#1f78b4', '#b2df8a', '#33a02c', '#fb9a99'], + }, + ] + + describe(UserConfigModel.processNewConfig, () => { + const formValues = UserConfigModel.defaultFormValues({ + readers: [ + { label: 'fang', value: 'fang' }, + { label: 'talon', value: 'talon' }, + { label: 'mabel', value: 'mabel' }, + ], + config: [ + UserConfigModel.defaultConfigValues, + UserConfigModel.defaultConfigValues, + ], + public: false, + }) + + it('returns config form values as user config object', () => { + const newUserConfig = UserConfigModel.publishConfig( + formValues, + colors, + 'owl' + ) + + expect(newUserConfig).toEqual({ + config: { + 0: [ + { + analysis: '', + category: '', + color: ['#a6cee3', '#1f78b4', '#b2df8a', '#33a02c', '#fb9a99'], + label: '', + range: ['0', '1'], + variable: '', + text: true, + }, + { + analysis: '', + category: '', + + color: ['#a6cee3', '#1f78b4', '#b2df8a', '#33a02c', '#fb9a99'], + label: '', + range: ['0', '1'], + variable: '', + text: true, + }, + ], + }, + description: '', + name: '', + owner: 'owl', + readers: ['fang', 'talon', 'mabel'], + type: 'matrix', + public: false, + status: 1, + }) + }) + }) + + describe(UserConfigModel.processConfigToFormFields, () => { + it('returns a current configuration into form values', async () => { + const currentConfiguration = { + config: { + 0: [ + { + analysis: '', + category: '', + color: ['#a6cee3', '#1f78b4', '#b2df8a', '#33a02c', '#fb9a99'], + label: '', + range: ['0', '1'], + variable: '', + text: true, + }, + { + analysis: '', + category: '', + color: ['#a6cee3', '#1f78b4', '#b2df8a', '#33a02c', '#fb9a99'], + label: '', + range: ['0', '1'], + variable: '', + text: true, + }, + ], + }, + name: '', + owner: 'owl', + readers: ['fang', 'talon', 'owl'], + type: 'matrix', + public: true, + } + const formFields = await UserConfigModel.processConfigToFormFields( + currentConfiguration, + colors + ) + + expect(formFields).toEqual( + UserConfigModel.defaultFormValues({ + owner: 'owl', + readers: [ + { label: 'fang', value: 'fang' }, + { label: 'talon', value: 'talon' }, + ], + config: [ + UserConfigModel.defaultConfigValues, + UserConfigModel.defaultConfigValues, + ], + public: true, + }) + ) + }) + }) +}) + +describe('findCategoryColor', () => { + it('finds the correct color value from color list', () => { + const colorList = createColorList() + const categoryColors = [ + '#ffffcc', + '#d9f0a3', + '#addd8e', + '#78c679', + '#31a354', + '#006837', + ] + expect(findCategoryColor(categoryColors, colorList)).toEqual({ + label: ['#ffffcc', '#d9f0a3', '#addd8e', '#78c679', '#31a354', '#006837'], + value: 3, + }) + }) +}) diff --git a/views/models/UserConfigModel/index.js b/views/models/UserConfigModel/index.js new file mode 100644 index 00000000..21338468 --- /dev/null +++ b/views/models/UserConfigModel/index.js @@ -0,0 +1,104 @@ +const defaultColorValue = 221 +const UserConfigModel = { + defaultConfigValues: { + category: '', + analysis: '', + variable: '', + label: '', + color: defaultColorValue, + min: '0', + max: '1', + text: true, + }, + defaultFormValues: (overrides = {}) => ({ + configName: '', + configType: 'matrix', + description: '', + readers: [], + config: [], + public: false, + ...overrides, + }), + publishConfig: (formValues, colors, owner) => ({ + ...processConfigAssessment(formValues, colors, owner), + status: 1, + }), + saveAsDraft: (formValues, colors, owner) => ({ + ...processConfigAssessment(formValues, colors, owner), + status: 0, + }), + processConfigToFormFields: (currentConfig, colors) => { + const { + config, + description, + name, + owner, + public: publicConfig, + readers, + type, + updatedAt, + status, + } = currentConfig + const configKey = Object.keys(config)[0] + const configCategoryFields = config[configKey].map( + ({ category, analysis, variable, label, range, color, text }) => { + const [min, max] = range + const loadColor = findCategoryColor(color, colors) + + return { + analysis, + category, + color: loadColor ? loadColor.value : defaultColorValue, + label, + min, + max, + text, + variable, + } + } + ) + return { + configName: name, + configType: type, + description: description || '', + owner, + readers: readers + .map((reader) => ({ + value: reader, + label: reader, + })) + .filter(({ label }) => label !== owner), + config: configCategoryFields, + public: publicConfig, + updatedAt, + status, + } + }, + isActive: (configuration, property) => + configuration[property] === 1 || !Object.hasOwn(configuration, property), +} + +export const findCategoryColor = (categoryColors, colors) => + colors.find(({ label }) => categoryColors.every((el, i) => el === label[i])) + +const processConfigAssessment = (formValues, colors, owner) => { + return { + config: { + 0: formValues.config.map(({ min, max, color, ...rest }) => { + return { + color: colors.find(({ value }) => value === color).label, + range: [min, max], + ...rest, + } + }), + }, + description: formValues.description, + name: formValues.configName, + public: formValues.public, + owner, + readers: formValues.readers.map(({ value }) => value), + type: formValues.configType, + } +} + +export default UserConfigModel diff --git a/views/models/UsersModel/UsersModel.test.js b/views/models/UsersModel/UsersModel.test.js new file mode 100644 index 00000000..2e1028a6 --- /dev/null +++ b/views/models/UsersModel/UsersModel.test.js @@ -0,0 +1,63 @@ +import UsersModel from '.' +import { createUser } from '../../../test/fixtures' + +describe('Models - UsersModel', () => { + describe(UsersModel.createUserFriendList, () => { + it('returns a user list with label, value, and isFixed properties', () => { + const user = createUser() + + const users = [ + user, + createUser({ uid: 'user2' }), + createUser({ uid: 'user3' }), + ] + const selectUsersList = UsersModel.createUserFriendList(users, user.uid) + + expect(selectUsersList).toEqual([ + { + isFixed: true, + label: 'user-uid', + value: 'user-uid', + }, + { + isFixed: false, + label: 'user2', + value: 'user2', + }, + { + isFixed: false, + label: 'user3', + value: 'user3', + }, + ]) + }) + }) + describe(UsersModel.userFromFormValues, () => { + it('returns a user to be updated in the database from a form', () => { + const updatedUser = createUser({ + access: [ + { value: 'CA', label: 'CA' }, + { value: 'YA', label: 'YA' }, + ], + role: { value: 'admin' }, + }) + const user = createUser({ access: ['CA', 'YA'], role: 'admin' }) + + expect(UsersModel.userFromFormValues(updatedUser)).toEqual(user) + }) + }) + describe(UsersModel.formValuesFromUser, () => { + it('returns a user to be used as form values', () => { + const user = createUser({ access: ['CA', 'YA'], role: 'admin' }) + const formValues = createUser({ + access: [ + { value: 'CA', label: 'CA' }, + { value: 'YA', label: 'YA' }, + ], + role: { value: 'admin' }, + }) + + expect(UsersModel.formValuesFromUser(user)).toEqual(formValues) + }) + }) +}) diff --git a/views/models/UsersModel/index.js b/views/models/UsersModel/index.js new file mode 100644 index 00000000..c0442c89 --- /dev/null +++ b/views/models/UsersModel/index.js @@ -0,0 +1,35 @@ +const UsersModel = { + createUserFriendList: (users, owner) => { + return users.map(({ uid }) => ({ + label: uid, + value: uid, + isFixed: uid === owner, + })) + }, + createOptionsFromReaders: (readers, owner) => + readers.map((reader) => ({ + label: reader, + value: reader, + isFixed: reader === owner, + })), + createReadersList: (readers) => readers.map(({ value }) => value), + userAccessDropdownOptions: (access) => + access.map((site) => ({ + label: site, + value: site, + })), + userFromFormValues: (user) => ({ + ...user, + role: user.role.value, + access: user.access.map(({ value }) => value), + }), + formValuesFromUser(user) { + return { + ...user, + role: { value: user.role }, + access: this.userAccessDropdownOptions(user.access), + } + }, +} + +export default UsersModel diff --git a/views/models/index.js b/views/models/index.js new file mode 100644 index 00000000..f63a31c0 --- /dev/null +++ b/views/models/index.js @@ -0,0 +1,17 @@ +import ChartFiltersModel from './ChartFiltersModel' +import ChartModel from './ChartModel' +import FileModel from './FileModel' +import StudiesModel from './StudiesModel' +import UrlModel from './UrlModel' +import UserConfigModel from './UserConfigModel' +import UsersModel from './UsersModel' + +export { + ChartModel, + ChartFiltersModel, + StudiesModel, + UserConfigModel, + UrlModel, + UsersModel, + FileModel, +} diff --git a/views/pages/AccountPage/AccountPage.css b/views/pages/AccountPage/AccountPage.css new file mode 100644 index 00000000..c94e25ec --- /dev/null +++ b/views/pages/AccountPage/AccountPage.css @@ -0,0 +1,21 @@ +.AccountPage { + display: flex; + flex-grow: 1; + flex-direction: column; + padding: 35px; + margin: 0; +} +.AccountPageBanner { + display: flex; + justify-content: space-between; +} + +.AccountLink { + align-self: flex-start; + color: var(--text-secondary); +} +@media screen and (min-width: 900px) { + .AccountPage { + padding: 70px 125px 70px 24px; + } +} diff --git a/views/pages/AccountPage/AccountPage.test.jsx b/views/pages/AccountPage/AccountPage.test.jsx new file mode 100644 index 00000000..8645c9a1 --- /dev/null +++ b/views/pages/AccountPage/AccountPage.test.jsx @@ -0,0 +1,38 @@ +import React from 'react' + +import { render, screen } from '@testing-library/react' +import { MemoryRouter } from 'react-router-dom' + +import AccountPage from '.' + +jest.mock('react-router-dom', () => ({ + ...jest.requireActual('react-router-dom'), + useOutletContext: () => { + return { + user: { + display_name: 'Owl', + icon: 'data:image/png;base64,SGVsbG8sIFdvcmxkIQ==', + iconFileName: 'profileImage.png', + mail: 'mail@mail.com', + title: 'MR', + }, + setUser: jest.fn(), + setNotification: jest.fn(), + } + }, +})) +describe('AccountPage', () => { + test('it renders the page and the form sections', () => { + render(, { wrapper: MemoryRouter }) + + const accountPageBanner = screen.getByText('Profile') + const accountFormProfileImage = screen.getByText('Upload Profile Photo') + const accountFormInputs = screen.getByRole('textbox', { name: 'Full name' }) + const resetPasswordButton = screen.getByText('Request password change') + + expect(accountPageBanner).toBeInTheDocument() + expect(accountFormProfileImage).toBeInTheDocument() + expect(accountFormInputs).toBeInTheDocument() + expect(resetPasswordButton).toBeInTheDocument() + }) +}) diff --git a/views/pages/AccountPage/AccountPageHeader.jsx b/views/pages/AccountPage/AccountPageHeader.jsx new file mode 100644 index 00000000..cd9ba664 --- /dev/null +++ b/views/pages/AccountPage/AccountPageHeader.jsx @@ -0,0 +1,51 @@ +import React from 'react' + +import { ArrowForwardOutlined } from '@mui/icons-material' +import { Typography, Button } from '@mui/material' +import { useNavigate } from 'react-router-dom' + +import { borderRadius, fontSize, lineHeight } from '../../../constants' +import { routes } from '../../routes/routes' + +const AccountPageHeader = () => { + const navigate = useNavigate() + + return ( + <> + + Profile + + + + ) +} +export default AccountPageHeader diff --git a/views/pages/AccountPage/AccountPageHeader.test.jsx b/views/pages/AccountPage/AccountPageHeader.test.jsx new file mode 100644 index 00000000..5ad2f1cc --- /dev/null +++ b/views/pages/AccountPage/AccountPageHeader.test.jsx @@ -0,0 +1,18 @@ +import React from 'react' + +import { screen, render } from '@testing-library/react' +import { MemoryRouter } from 'react-router-dom' + +import AccountPageHeader from './AccountPageHeader' + +describe('AccountPageHeader', () => { + it('renders the banner', () => { + render(, { wrapper: MemoryRouter }) + + const title = screen.getByText('Profile') + const logOut = screen.getByRole('button') + + expect(title).toBeInTheDocument() + expect(logOut).toBeInTheDocument() + }) +}) diff --git a/views/pages/AccountPage/index.jsx b/views/pages/AccountPage/index.jsx new file mode 100644 index 00000000..0814d8cf --- /dev/null +++ b/views/pages/AccountPage/index.jsx @@ -0,0 +1,85 @@ +import React from 'react' + +import { Button } from '@mui/material' +import { useOutletContext, Link } from 'react-router-dom' + +import AccountPageHeader from './AccountPageHeader' +import { borderRadius, fontSize } from '../../../constants' +import api from '../../api' +import UserProfileForm from '../../forms/UserProfileForm' +import FileModel from '../../models/FileModel' +import { routes } from '../../routes/routes' + +import './AccountPage.css' + +const AccountPage = () => { + const { user, setUser, setNotification } = useOutletContext() + const { display_name, icon, iconFileName, mail, title, preferences } = user + const iconFile = + !!icon && !!iconFileName + ? FileModel.fromDataURL(icon, iconFileName) + : undefined + + const onSubmit = async (userProfileValues) => { + try { + const { iconFile, ...formData } = userProfileValues + const icon = iconFile ? await FileModel.toDataURL(iconFile) : '' + const iconFileName = iconFile ? iconFile.name : '' + const updatedUser = await api.users.update(user.uid, { + ...formData, + preferences, + icon, + iconFileName, + }) + + setUser(updatedUser) + setNotification(() => ({ + open: true, + message: 'User has been updated.', + })) + } catch (error) { + setNotification({ + open: true, + message: error.message, + }) + } + } + + return ( +
+
+ +
+ + + + Request password change + +
+ ) +} + +export default AccountPage diff --git a/views/pages/AdminPage/AdminCheck.jsx b/views/pages/AdminPage/AdminCheck.jsx new file mode 100644 index 00000000..c532db3d --- /dev/null +++ b/views/pages/AdminPage/AdminCheck.jsx @@ -0,0 +1,13 @@ +import { Navigate, useOutletContext } from 'react-router-dom' + +import { ADMIN_ROLE } from '../../../constants' +import { routes } from '../../routes/routes' + +const AdminCheck = ({ children }) => { + const { user } = useOutletContext() + const role = user.role + + return role !== ADMIN_ROLE ? : children +} + +export default AdminCheck diff --git a/views/pages/AdminPage/AdminPage.test.jsx b/views/pages/AdminPage/AdminPage.test.jsx new file mode 100644 index 00000000..fd3810ba --- /dev/null +++ b/views/pages/AdminPage/AdminPage.test.jsx @@ -0,0 +1,36 @@ +import { screen } from '@testing-library/react' + +import AdminPage from '.' +import { createUser } from '../../../test/fixtures' +import renderPage from '../../../test/PageRenderer' + +const mockUser = createUser() +const mockUsers = [createUser(), createUser()] + +jest.mock( + 'react-router-dom', + () => { + return { + ...jest.requireActual('react-router-dom'), + useOutletContext: () => { + return { + user: mockUser, + users: mockUsers, + setNotification: jest.fn(), + } + }, + } + }, + {} +) +describe('Admin Page', () => { + it('renders the page', () => { + renderPage(AdminPage) + + const pageTitle = screen.getByText('Admin') + + expect(pageTitle).toBeInTheDocument() + expect(screen.getByRole('combobox')).toBeInTheDocument() + expect(screen.getByRole('table')).toBeInTheDocument() + }) +}) diff --git a/views/pages/AdminPage/index.jsx b/views/pages/AdminPage/index.jsx new file mode 100644 index 00000000..c969ec0e --- /dev/null +++ b/views/pages/AdminPage/index.jsx @@ -0,0 +1,263 @@ +import React, { useEffect, useState } from 'react' + +import { + Box, + Button, + Modal, + ListItemText, + MenuItem, + Divider, +} from '@mui/material' +import { useForm } from 'react-hook-form' +import { useOutletContext } from 'react-router-dom' + +import { ROLE_OPTIONS } from '../../../constants' +import api from '../../api' +import PageHeader from '../../components/PageHeader' +import { AdminUsersSearchForm } from '../../forms/AdminUsersSearchForm' +import ControlledMultiSelect from '../../forms/ControlledMultiSelect' +import ControlledSelectInput from '../../forms/ControlledSelect' +import { UsersModel, StudiesModel } from '../../models' +import AdminUsersTable from '../../tables/AdminUsersTable' + +const modalStyle = { + position: 'absolute', + top: '50%', + left: '50%', + transform: 'translate(-50%, -50%)', + width: 720, + bgcolor: 'background.paper', + border: '2px solid #000', + boxShadow: 24, + p: 4, +} + +const AdminPage = () => { + const { setNotification, users, setUsers } = useOutletContext() + + const [searchOptions, setSearchOptions] = useState([]) + const [studies, setStudies] = useState([]) + const [searchOptionsValue, setSearchOptionsValue] = useState([]) + const [openResetKeyModal, setOpenResetKeyModal] = useState(false) + const [resetKeyValue, setResetKeyValue] = useState('') + const [currentRowIndex, setCurrentRowIndex] = useState(null) + const [openAccessModal, setOpenAccessModal] = useState(false) + + const { handleSubmit, control, reset } = useForm({ + defaultValues: { + access: [], + role: '', + }, + mode: 'onChange', + }) + + const filteredUsers = (searchOptionsValue || []).length + ? users.filter((user) => + searchOptionsValue + .map((searchOption) => searchOption.value) + .includes(user.uid) + ) + : users + + const updateUsers = (newUser) => { + const newUserIndex = users.findIndex((u) => u.uid === newUser.uid) + if (newUserIndex === -1) return + + const updatedUsers = users + .slice(0, newUserIndex) + .concat([newUser]) + .concat(users.slice(newUserIndex + 1)) + + setUsers(updatedUsers) + } + + const handleNotification = (message) => + setNotification({ open: true, message }) + const handleUserRemove = async (rowIndex) => { + try { + const userId = filteredUsers[rowIndex].uid + + await api.admin.users.destroy(userId) + + const usersList = await api.users.loadAll() + + setUsers(usersList) + handleNotification('User has been deleted') + } catch (error) { + handleNotification(error.message) + } + } + + const handleResetPassword = async (rowIndex) => { + try { + const resetKey = crypto.randomUUID() + const userValues = filteredUsers[rowIndex] + const { uid } = userValues + const userAttributes = { + ...userValues, + force_reset_pw: true, + reset_key: resetKey, + } + const updatedUser = await api.admin.users.update(uid, userAttributes) + updateUsers(updatedUser) + setResetKeyValue(resetKey) + setOpenResetKeyModal(true) + handleNotification('Reset Key has been applied successfully') + } catch (error) { + handleNotification(error.message) + } + } + + const handleUserAccess = (rowIndex) => { + setCurrentRowIndex(rowIndex) + setOpenAccessModal(true) + reset({ + access: filteredUsers[rowIndex].access.map((study) => ({ + label: study, + value: study, + })), + role: filteredUsers[rowIndex].role, + }) + } + + const handleUpdateUserAccess = async (formValues) => { + try { + formValues.access = formValues.access.map(({ value }) => value) + + const userValues = filteredUsers[currentRowIndex] + const { uid } = userValues + const userAttributes = { + ...userValues, + ...formValues, + } + const updatedUser = await api.admin.users.update(uid, userAttributes) + + updateUsers(updatedUser) + setOpenAccessModal(false) + reset({ access: [], role: '' }) + handleNotification('User access has been applied successfully') + } catch (error) { + handleNotification(error.message) + } + } + + const handleUserBlock = async (rowIndex) => { + try { + const userValues = filteredUsers[rowIndex] + + const userId = userValues.uid + const updatedUser = await api.admin.users.update(userId, { + ...userValues, + blocked: !userValues.blocked, + }) + + updateUsers(updatedUser) + + handleNotification('User updated successfully') + } catch (error) { + handleNotification(error.message) + } + } + const fetchStudies = async () => { + try { + const listOfStudies = await api.admin.studies.all() + const studyOptions = StudiesModel.dropdownSelectOptions(listOfStudies) + + setStudies(studyOptions) + } catch (error) { + handleNotification(error.message) + } + } + + const handleChangeAccountExpiration = async (rowIndex, value) => { + try { + const userValues = filteredUsers[rowIndex] + const { uid } = userValues + const userAttributes = { + ...userValues, + account_expires: value.toISOString(), + } + const updatedUser = await api.admin.users.update(uid, userAttributes) + + updateUsers(updatedUser) + handleNotification('Account expiration has been applied successfully') + } catch (error) { + handleNotification(error.message) + } + } + + useEffect(() => { + fetchStudies() + }, []) + + useEffect(() => { + const searchOptionsFromUsers = UsersModel.createUserFriendList(users) + setSearchOptions(searchOptionsFromUsers) + }, [users, searchOptionsValue]) + + return ( + + + + + + setOpenResetKeyModal(false)} + > + +

Reset Key

+

{resetKeyValue}

+ + + + setOpenAccessModal(false)} + > + +
+ + + + + + {ROLE_OPTIONS.map(({ value, label }) => ( + + {label} + + ))} + + + + + + + + ) +} + +export default AdminPage diff --git a/views/pages/ChartsPage.jsx b/views/pages/ChartsPage.jsx new file mode 100644 index 00000000..c796a5e1 --- /dev/null +++ b/views/pages/ChartsPage.jsx @@ -0,0 +1,85 @@ +import React from 'react' + +import { Box, Button } from '@mui/material' +import { Link, useOutletContext } from 'react-router-dom' + +import PageHeader from '../components/PageHeader' +import ChartShareForm from '../forms/ChartShareForm' +import ChartsSearchForm from '../forms/ChartsSearchForm' +import useChartsList from '../hooks/useChartsList' +import { routes } from '../routes/routes' +import ChartsTable from '../tables/ChartsTable' + +const ChartsPage = () => { + const { user } = useOutletContext() + const { + charts, + handleSearch, + onDelete, + onDuplicate, + onFavorite, + onShare, + onSort, + sortDirection, + sortBy, + chartToShare, + closeDialog, + shareWithUsers, + sharedWithOptions, + shareFormControl, + shareFormValues, + clearSelectedUsers, + selectAllUsers, + } = useChartsList() + + return ( + + + New chart + + } + form={ + + } + /> + + + + ) +} + +export default ChartsPage diff --git a/views/pages/ConfigurationsPage/ConfigurationsPage.css b/views/pages/ConfigurationsPage/ConfigurationsPage.css new file mode 100644 index 00000000..ae885e75 --- /dev/null +++ b/views/pages/ConfigurationsPage/ConfigurationsPage.css @@ -0,0 +1,5 @@ +.ConfigurationsPageActions { + display: grid; + grid-template-columns: 1fr 1fr; + gap: 20px; +} diff --git a/views/pages/ConfigurationsPage/index.jsx b/views/pages/ConfigurationsPage/index.jsx new file mode 100644 index 00000000..bed0902e --- /dev/null +++ b/views/pages/ConfigurationsPage/index.jsx @@ -0,0 +1,220 @@ +import React, { useState, useEffect } from 'react' + +import { Add, UploadFile } from '@mui/icons-material' +import { Box, Button, useMediaQuery } from '@mui/material' +import { useOutletContext, Link } from 'react-router-dom' + +import { fontSize } from '../../../constants' +import api from '../../api' +import PageHeader from '../../components/PageHeader' +import ShareConfigurationForm from '../../forms/ShareConfigurationForm' +import { UsersModel } from '../../models' +import { routes } from '../../routes/routes' +import ConfigurationsTable from '../../tables/ConfigurationsTable' + +import './ConfigurationsPage.css' + +const ConfigurationsPage = () => { + const isMobile = useMediaQuery('(max-width:900px)') + const { navigate, setNotification, setUser, user, users } = useOutletContext() + const { uid, preferences } = user + const [configurations, setConfigurations] = useState([]) + const [configuration, setConfiguration] = useState(null) + const open = !!configuration?._id + const options = + configuration?.readers && configuration?.owner + ? UsersModel.createUserFriendList(users, configuration.owner) + : [] + const initialValues = + configuration?.readers && configuration?.owner + ? { + readers: UsersModel.createOptionsFromReaders( + configuration.readers, + configuration.owner + ), + } + : { readers: [] } + + const handleNotification = (message) => + setNotification({ open: true, message }) + const onSubmit = async (data) => { + try { + const configAttributes = { + readers: UsersModel.createReadersList(data.readers), + } + await api.userConfigurations.update( + uid, + configuration._id, + configAttributes + ) + + await loadAllConfigurations(uid) + + closeForm() + } catch (error) { + handleNotification(error.message) + } + } + const loadAllConfigurations = async (userId) => { + try { + const configurations = await api.userConfigurations.all(userId) + + setConfigurations(configurations) + } catch (error) { + handleNotification(error.message) + } + } + + const closeForm = () => setConfiguration(null) + + const handleFormModal = async (config) => setConfiguration(config) + + const handleDefaultConfiguration = async (configurationId) => { + try { + const userAttributes = { + ...user, + preferences: { + ...preferences, + config: preferences.config === configurationId ? '' : configurationId, + }, + } + const updatedUser = await api.users.update(uid, userAttributes) + + setUser(updatedUser) + } catch (error) { + handleNotification(error.message) + } + } + const handleEditConfig = (configurationId) => + navigate(routes.editConfiguration(configurationId)) + const handleDeleteConfig = async (configurationId) => { + try { + await api.userConfigurations.destroy(uid, configurationId) + + await loadAllConfigurations(uid) + + if (preferences.config === configurationId) + handleDefaultConfiguration(configurationId) + } catch (error) { + handleNotification(error.message) + } + } + const handleDuplicateConfiguration = async (configuration) => { + try { + const { _id, ...configAttributes } = configuration + const newConfig = { + ...configAttributes, + owner: uid, + readers: [uid], + status: 1, + } + + await api.userConfigurations.create(uid, newConfig) + await loadAllConfigurations(uid) + } catch (error) { + handleNotification(error.message) + } + } + + const handleConfigurationUpload = (e) => { + try { + const file = e.target.files ? e.target.files[0] : '' + + new Response(file).json().then(async ({ name, config }) => { + const newConfigurationAttributes = { + config: { + 0: config, + }, + name, + owner: user.uid, + readers: [user.uid], + type: 'matrix', + status: 1, + } + + await api.userConfigurations.create( + user.uid, + newConfigurationAttributes + ) + await loadAllConfigurations(uid) + + handleNotification('New configuration added') + }) + } catch (error) { + handleNotification(error.message) + } + } + + useEffect(() => { + loadAllConfigurations(uid) + }, []) + return ( + + + + + + } + /> + + {configuration?._id && ( + + )} + + ) +} + +export default ConfigurationsPage diff --git a/views/pages/DashboardPage/DashboardPage.css b/views/pages/DashboardPage/DashboardPage.css new file mode 100644 index 00000000..79773edc --- /dev/null +++ b/views/pages/DashboardPage/DashboardPage.css @@ -0,0 +1,3 @@ +.DashboardPageSection { + padding-top: 56px; +} diff --git a/views/pages/DashboardPage/DashboardPage.test.jsx b/views/pages/DashboardPage/DashboardPage.test.jsx new file mode 100644 index 00000000..06667404 --- /dev/null +++ b/views/pages/DashboardPage/DashboardPage.test.jsx @@ -0,0 +1,91 @@ +import { screen, within, waitFor } from '@testing-library/react' + +import DashboardPage from '.' +import { + createParticipantList, + createUser, + createChart, +} from '../../../test/fixtures' +import renderPage from '../../../test/PageRenderer' + +const mockUser = createUser({ access: ['AA', 'BB', 'CC'] }) +const mockParticipants = createParticipantList() +const mockedUsers = [ + mockUser, + createUser({ uid: 'foo' }), + createUser({ uid: 'bar' }), +] +const mockedCharts = [ + createChart({ chartOwner: { display_name: 'Jane' } }), + createChart({ + title: 'chart two', + owner: 'foo', + chartOwner: { display_name: 'Jack' }, + }), + createChart({ + title: 'bar chart', + owner: 'bar', + chartOwner: { display_name: 'Bert' }, + }), +] + +jest.mock( + 'react-router-dom', + () => { + return { + ...jest.requireActual('react-router-dom'), + useOutletContext: () => { + return { + user: mockUser, + setNotification: jest.fn(), + users: mockedUsers, + } + }, + } + }, + {} +) + +jest.mock('../../api', () => { + return { + participants: { + all: () => Promise.resolve(mockParticipants), + }, + charts: { + chart: { + all: () => mockedCharts, + }, + }, + } +}) +describe('Dashboard Page', () => { + test('Dashboard Page renders', async () => { + renderPage(DashboardPage) + + await waitFor(() => { + expect(screen.getByText('Dashboard')).toBeInTheDocument() + }) + }) + + test('Dashboard Page shows 5 rows of Participants', async () => { + renderPage(DashboardPage) + + await waitFor(() => { + const participantRows = within( + screen.getAllByRole('table')[0] + ).getAllByRole('row') + expect(participantRows.length).toBe(6) + }) + }) + + test('Renders Charts table', async () => { + renderPage(DashboardPage) + + await waitFor(() => { + const chartsTableRows = within( + screen.getAllByRole('table')[1] + ).getAllByRole('row') + expect(chartsTableRows.length).toBe(4) + }) + }) +}) diff --git a/views/pages/DashboardPage/DashboardPageSectionHeader.jsx b/views/pages/DashboardPage/DashboardPageSectionHeader.jsx new file mode 100644 index 00000000..2ad2699f --- /dev/null +++ b/views/pages/DashboardPage/DashboardPageSectionHeader.jsx @@ -0,0 +1,28 @@ +import React from 'react' + +import { Typography } from '@mui/material' +import { Link } from 'react-router-dom' + +import { fontSize } from '../../../constants' + +const DashboardPageSectionHeader = ({ title, to }) => { + return ( + + + {title} + + + View All + + + ) +} + +export default DashboardPageSectionHeader diff --git a/views/pages/DashboardPage/DashboardPageSectionHeader.test.jsx b/views/pages/DashboardPage/DashboardPageSectionHeader.test.jsx new file mode 100644 index 00000000..c8ddaaad --- /dev/null +++ b/views/pages/DashboardPage/DashboardPageSectionHeader.test.jsx @@ -0,0 +1,18 @@ +import { render, screen } from '@testing-library/react' +import { MemoryRouter } from 'react-router-dom' + +import DashboardPageSectionHeader from './DashboardPageSectionHeader' + +describe('DashboardPageSectionHeader', () => { + it('renders a header with a title and a View All text with an href property', () => { + render(, { + wrapper: MemoryRouter, + }) + + const viewAll = screen.getByText('View All') + const title = screen.getByText('Section') + + expect(title).toBeInTheDocument() + expect(viewAll).toHaveAttribute('href', '/some-route') + }) +}) diff --git a/views/pages/DashboardPage/index.jsx b/views/pages/DashboardPage/index.jsx new file mode 100644 index 00000000..73c41d84 --- /dev/null +++ b/views/pages/DashboardPage/index.jsx @@ -0,0 +1,88 @@ +import React from 'react' + +import { Box } from '@mui/material' +import { useOutletContext } from 'react-router-dom' + +import DashboardPageSectionHeader from './DashboardPageSectionHeader' +import PageHeader from '../../components/PageHeader' +import ChartShareForm from '../../forms/ChartShareForm' +import useChartsList from '../../hooks/useChartsList' +import useParticipantsList from '../../hooks/useParticipantsList' +import { routes } from '../../routes/routes' +import ChartsTable from '../../tables/ChartsTable' +import ParticipantsTable from '../../tables/ParticipantsTable' + +import './DashboardPage.css' + +const DashboardPage = () => { + const { user } = useOutletContext() + const { participants, onSort, onStar, sortBy, sortDirection } = + useParticipantsList() + const { + charts, + onDelete, + onDuplicate, + onFavorite, + onShare, + onSort: onChartSort, + sortDirection: chartSortDirection, + sortBy: chartSortBy, + chartToShare, + closeDialog, + shareWithUsers, + sharedWithOptions, + shareFormControl, + shareFormValues, + clearSelectedUsers, + selectAllUsers, + } = useChartsList() + + return ( + + +
+ + +
+
+ + +
+ + + ) +} + +export default DashboardPage diff --git a/views/pages/EditChartPage.jsx b/views/pages/EditChartPage.jsx new file mode 100644 index 00000000..6ae9773c --- /dev/null +++ b/views/pages/EditChartPage.jsx @@ -0,0 +1,54 @@ +import React, { useState, useEffect } from 'react' + +import { Box } from '@mui/material' +import { useParams, useOutletContext } from 'react-router-dom' + +import api from '../api' +import ChartForm from '../forms/ChartForm' +import { routes } from '../routes/routes' + +const EditChartPage = () => { + const { chart_id } = useParams() + const { user, navigate, setNotification } = useOutletContext() + const [loading, setLoading] = useState(true) + const [initialValues, setInitialValues] = useState(null) + + const handleSubmit = async (formValues) => { + try { + const data = await api.charts.chart.update(chart_id, formValues) + + navigate(routes.viewChart(data._id)) + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + + const getChart = async () => { + try { + return await api.charts.chart.show(chart_id) + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + + useEffect(() => { + getChart().then((chartValues) => { + setInitialValues(chartValues) + setLoading(false) + }) + }, []) + + if (loading) return
Loading...
+ + return ( + + + + ) +} + +export default EditChartPage diff --git a/views/pages/EditConfigPage.jsx b/views/pages/EditConfigPage.jsx new file mode 100644 index 00000000..cf071d56 --- /dev/null +++ b/views/pages/EditConfigPage.jsx @@ -0,0 +1,119 @@ +import React, { useState, useEffect } from 'react' + +import { Box, Typography } from '@mui/material' +import dayjs from 'dayjs' +import { useParams, useOutletContext } from 'react-router-dom' + +import api from '../api' +import PageHeader from '../components/PageHeader' +import { colorList } from '../fe-utils/colorList' +import ConfigForm from '../forms/ConfigForm' +import { UserConfigModel } from '../models' + +const colors = colorList() + +const EditConfigPage = () => { + const { user, setNotification, users } = useOutletContext() + const [assessmentOptions, setAssessmentOptions] = useState([]) + const [initialValues, setInitialValues] = useState({}) + const [loading, setLoading] = useState(true) + const { config_id } = useParams() + const friendsList = users + .map(({ uid }) => ({ label: uid, value: uid })) + .filter(({ label }) => label !== user.uid) + const { uid } = user + + const handleSubmitPublish = async (formValues) => { + try { + const updatedConfiguration = UserConfigModel.publishConfig( + formValues, + colors, + uid + ) + await api.userConfigurations.update(uid, config_id, updatedConfiguration) + + setNotification({ + open: true, + message: 'Configuration Added', + }) + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + const fetchCurrentConfig = async () => { + try { + const data = await api.userConfigurations.findOne(uid, config_id) + + return UserConfigModel.processConfigToFormFields(data, colors) + } catch (error) { + setNotification({ + open: true, + message: error.message, + }) + } + } + const handleAssessmentSearch = async (e) => { + const assessments = await api.assessments.loadAll({ + search: e.target.value, + }) + const assessmentMenuOptions = assessments.map(({ name }) => name) + + setAssessmentOptions(assessmentMenuOptions) + } + + const handleClearAssessments = async () => setAssessmentOptions([]) + const handleSubmitDraft = async (formValues) => { + const newConfigurationAttributes = UserConfigModel.saveAsDraft( + formValues, + colors, + uid + ) + await api.userConfigurations.update( + uid, + config_id, + newConfigurationAttributes + ) + + setNotification({ + open: true, + message: 'Draft saved', + }) + } + + useEffect(() => { + fetchCurrentConfig().then((values) => { + setInitialValues(values) + setLoading(false) + }) + }, []) + + if (loading) return
Depending on the size, this may take a while...
+ + return ( + + + Saved as draft: {dayjs(initialValues.updatedAt).format('llll')} + + ) : null + } + isDescription + /> + + + ) +} + +export default EditConfigPage diff --git a/views/pages/GraphPage.jsx b/views/pages/GraphPage.jsx new file mode 100644 index 00000000..b09c7303 --- /dev/null +++ b/views/pages/GraphPage.jsx @@ -0,0 +1,105 @@ +import React, { useEffect, useState } from 'react' + +import { Box, Divider } from '@mui/material' +import { useOutletContext, useParams } from 'react-router-dom' + +import api from '../api' +import { Graph } from '../components/Graph' +import PageHeader from '../components/PageHeader' +import SelectConfigurationForm from '../forms/SelectConfigurationsForm' + +const GraphPage = () => { + const { user, theme, setUser, setNotification } = useOutletContext() + const [configurations, setConfigurations] = useState([]) + const { study, subject } = useParams() + const [participants, setParticipants] = useState([]) + const { preferences } = user + + const fetchParticipants = async () => { + if (subject) { + setParticipants([subject]) + } else { + const participantsRes = await api.participants.all({ + sortBy: 'participant', + sortDirection: 'ASC', + studies: [study], + }) + const participants = participantsRes.map((p) => p.participant) + setParticipants(participants) + } + } + const loadActiveConfigurations = async () => { + const queryParams = { status: 'active' } + const configurations = await api.userConfigurations.all( + user.uid, + queryParams + ) + + setConfigurations(configurations) + } + const handleSubmit = async (formValues) => { + try { + const { uid } = user + const userAttributes = { + ...user, + preferences: { + ...user.preferences, + config: formValues.config, + }, + } + const updatedUser = await api.users.update(uid, userAttributes) + + setUser(updatedUser) + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + + useEffect(() => { + loadActiveConfigurations() + }, []) + + useEffect(() => { + fetchParticipants() + }, [study, subject]) + + return ( + + + + {configurations.length ? ( + + ) : null} + + {participants.map((participant) => { + return ( + + + + + ) + })} + + ) +} + +export default GraphPage diff --git a/views/pages/NewChartPage.jsx b/views/pages/NewChartPage.jsx new file mode 100644 index 00000000..af27d418 --- /dev/null +++ b/views/pages/NewChartPage.jsx @@ -0,0 +1,40 @@ +import React from 'react' + +import { Box } from '@mui/material' +import { useOutletContext } from 'react-router-dom' + +import api from '../api' +import ChartForm from '../forms/ChartForm' +import { routes } from '../routes/routes' + +const NewChartPage = () => { + const { user, navigate, setNotification } = useOutletContext() + + const handleSubmit = async (formValues) => { + try { + const data = await api.charts.chart.create(formValues) + + navigate(routes.viewChart(data.chart_id)) + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + + return ( + + + + ) +} + +export default NewChartPage diff --git a/views/pages/NewConfigPage.jsx b/views/pages/NewConfigPage.jsx new file mode 100644 index 00000000..9fe70315 --- /dev/null +++ b/views/pages/NewConfigPage.jsx @@ -0,0 +1,88 @@ +import React, { useState } from 'react' + +import { Box } from '@mui/material' +import { useOutletContext } from 'react-router-dom' + +import api from '../api' +import PageHeader from '../components/PageHeader' +import { colorList } from '../fe-utils/colorList' +import ConfigForm from '../forms/ConfigForm' +import { UserConfigModel } from '../models' + +const colors = colorList() + +const NewConfigPage = () => { + const { user, users, setNotification } = useOutletContext() + const [assessmentOptions, setAssessmentOptions] = useState([]) + const { uid } = user + const defaultValues = UserConfigModel.defaultFormValues({ + readers: [], + owner: uid, + }) + const friendsList = users + .map(({ uid }) => ({ label: uid, value: uid })) + .filter(({ label }) => label !== user.uid) + + const handleSubmitPublish = async (formValues) => { + try { + const newConfigurationAttributes = UserConfigModel.publishConfig( + formValues, + colors, + uid + ) + + await api.userConfigurations.create(uid, newConfigurationAttributes) + + setNotification({ + open: true, + message: 'Configuration Added', + }) + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + + const handleAssessmentSearch = async (e) => { + const assessments = await api.assessments.loadAll({ + search: e.target.value, + }) + const assessmentMenuOptions = assessments.map(({ name }) => name) + + setAssessmentOptions(assessmentMenuOptions) + } + + const handleClear = async () => setAssessmentOptions([]) + + const handleSubmitDraft = async (formValues) => { + const newConfigurationAttributes = UserConfigModel.saveAsDraft( + formValues, + colors, + uid + ) + + await api.userConfigurations.create(uid, newConfigurationAttributes) + + setNotification({ + open: true, + message: 'Draft saved', + }) + } + + return ( + + + + + ) +} + +export default NewConfigPage diff --git a/views/pages/ParticipantsPage.jsx b/views/pages/ParticipantsPage.jsx new file mode 100644 index 00000000..b9ad792e --- /dev/null +++ b/views/pages/ParticipantsPage.jsx @@ -0,0 +1,56 @@ +import React from 'react' + +import { Box, Typography } from '@mui/material' + +import PageHeader from '../components/PageHeader' +import ParticipantsSearchForm from '../forms/ParticipantsSearchForm' +import useParticipantsList from '../hooks/useParticipantsList' +import ParticipantsTable from '../tables/ParticipantsTable' + +const ParticipantsPage = () => { + const { + handleSearch, + formFilters, + loading, + onSort, + onStar, + participants, + searchOptions, + sortBy, + sortDirection, + } = useParticipantsList() + + return ( + + + } + /> + + {loading ? ( + Loading... + ) : ( + + )} + + ) +} + +export default ParticipantsPage diff --git a/views/pages/RegistrationPage/RegistrationPage.css b/views/pages/RegistrationPage/RegistrationPage.css new file mode 100644 index 00000000..26ed5ade --- /dev/null +++ b/views/pages/RegistrationPage/RegistrationPage.css @@ -0,0 +1,4 @@ +.RegistrationPageSignInLink { + color: var(--primary-main); + padding-left: 3px; +} diff --git a/views/pages/RegistrationPage/RegistrationPage.test.jsx b/views/pages/RegistrationPage/RegistrationPage.test.jsx new file mode 100644 index 00000000..30de31f8 --- /dev/null +++ b/views/pages/RegistrationPage/RegistrationPage.test.jsx @@ -0,0 +1,27 @@ +import React from 'react' + +import { screen, render } from '@testing-library/react' +import { MemoryRouter } from 'react-router-dom' + +import RegistrationPage from '.' +import { NotificationContext } from '../../contexts' +import { routes } from '../../routes/routes' + +describe('Registration Page', () => { + test('renders the page', () => { + render( + + + , + { wrapper: MemoryRouter } + ) + + const pageTitle = screen.getByText('Sign up') + const signInLink = screen.getByText('Sign in') + const formInputs = screen.getAllByRole('textbox') + + expect(pageTitle).toBeInTheDocument() + expect(signInLink).toHaveAttribute('href', routes.signin) + expect(formInputs.length).toBe(3) + }) +}) diff --git a/views/pages/RegistrationPage/index.jsx b/views/pages/RegistrationPage/index.jsx new file mode 100644 index 00000000..24617af4 --- /dev/null +++ b/views/pages/RegistrationPage/index.jsx @@ -0,0 +1,63 @@ +import React, { useContext } from 'react' + +import { Typography } from '@mui/material' +import { Link } from 'react-router-dom' + +import { fontSize } from '../../../constants' +import api from '../../api' +import { NotificationContext } from '../../contexts' +import RegistrationForm from '../../forms/RegisterForm' +import { routes } from '../../routes/routes' + +import './RegistrationPage.css' + +const RegistrationPage = () => { + const [, setNotification] = useContext(NotificationContext) + const onSubmit = async (data) => { + try { + await api.auth.signup(data) + + setNotification({ + open: true, + message: + 'Account has been created, please wait for an Admin to provide access.', + }) + } catch (error) { + setNotification({ + open: true, + message: error.message, + }) + } + } + return ( + <> + + Sign Up + + + Already have a DPDash account? + + Sign in + + + + + ) +} + +export default RegistrationPage diff --git a/views/pages/ResetPasswordPage.jsx b/views/pages/ResetPasswordPage.jsx new file mode 100644 index 00000000..97dd1b9c --- /dev/null +++ b/views/pages/ResetPasswordPage.jsx @@ -0,0 +1,47 @@ +import React, { useContext } from 'react' + +import { Typography } from '@mui/material' +import { useNavigate } from 'react-router-dom' + +import api from '../api' +import { NotificationContext } from '../contexts' +import ResetPasswordForm from '../forms/ResetPasswordForm' +import { routes } from '../routes/routes' + +const ResetPasswordPage = () => { + const [, setNotification] = useContext(NotificationContext) + const navigate = useNavigate() + const onSubmit = async (resetAttributes) => { + try { + await api.auth.resetPassword(resetAttributes) + + navigate(routes.signin) + + setNotification({ + open: true, + message: 'Password has been updated successfully.', + }) + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + + return ( + <> + Reset your DPDash account + + navigate(routes.signin)} + onSubmit={onSubmit} + /> + + ) +} + +export default ResetPasswordPage diff --git a/views/pages/SignInPage/SignInPage.css b/views/pages/SignInPage/SignInPage.css new file mode 100644 index 00000000..4689b977 --- /dev/null +++ b/views/pages/SignInPage/SignInPage.css @@ -0,0 +1,10 @@ +.SignInPageRegister_link { + text-decoration: none; + padding-left: 6px; + color: var(--primary-main); +} + +.SignInPageResetPW_link { + padding-top: 16px; + text-decoration: none; +} diff --git a/views/pages/SignInPage/SignInPage.test.jsx b/views/pages/SignInPage/SignInPage.test.jsx new file mode 100644 index 00000000..e6f7de78 --- /dev/null +++ b/views/pages/SignInPage/SignInPage.test.jsx @@ -0,0 +1,40 @@ +import React from 'react' + +import { render, screen } from '@testing-library/react' +import { MemoryRouter } from 'react-router-dom' + +import SignInPage from '.' +import { AuthContext, NotificationContext } from '../../contexts' + +jest.mock('../../forms/SignInForm') +jest.mock('react-hook-form', () => ({ + ...jest.requireActual('react-hook-form'), + useForm: () => ({ + handleSubmit: () => jest.fn(), + }), + useFormContext: jest.fn(), +})) + +describe('SignIn Page', () => { + test('Sign In Page renders', () => { + render( + + + + + + + + ) + + const signInButton = screen.getByText('Sign In') + const registerCopy = screen.getByText('Need a DPDash Account?') + const registerLink = screen.getByText('Sign Up') + const resetPasswordLink = screen.getByText('Request Password Assistance') + + expect(signInButton).toBeInTheDocument() + expect(registerCopy).toBeInTheDocument() + expect(registerLink).toBeInTheDocument() + expect(resetPasswordLink).toBeInTheDocument() + }) +}) diff --git a/views/pages/SignInPage/index.jsx b/views/pages/SignInPage/index.jsx new file mode 100644 index 00000000..fb8b43a1 --- /dev/null +++ b/views/pages/SignInPage/index.jsx @@ -0,0 +1,53 @@ +import React, { useContext } from 'react' + +import { Typography } from '@mui/material' +import { useNavigate, Link } from 'react-router-dom' + +import api from '../../api' +import { AuthContext, NotificationContext } from '../../contexts' +import SignInForm from '../../forms/SignInForm' +import { routes } from '../../routes/routes' +import './SignInPage.css' + +const SignInPage = () => { + const navigate = useNavigate() + const [, setUser] = useContext(AuthContext) + const [, setNotification] = useContext(NotificationContext) + const onSubmit = async (data) => { + try { + const user = await api.auth.login(data) + + setUser(user) + navigate(routes.main) + } catch (error) { + setNotification({ open: true, message: error.message }) + } + } + + return ( + <> + + Sign In + + + Need a DPDash Account?{' '} + + Sign Up + + + + + Request Password Assistance + + + ) +} + +export default SignInPage diff --git a/views/pages/StudiesPage/StudiesPage.test.jsx b/views/pages/StudiesPage/StudiesPage.test.jsx new file mode 100644 index 00000000..97ea6e82 --- /dev/null +++ b/views/pages/StudiesPage/StudiesPage.test.jsx @@ -0,0 +1,38 @@ +import React from 'react' + +import { render, screen, waitFor } from '@testing-library/react' + +import StudiesPage from '.' +import { createStudyTableRowData } from '../../../test/fixtures' +import api from '../../api' + +describe(StudiesPage, () => { + const renderPage = () => render() + beforeEach(() => { + jest.spyOn(api.userStudies, 'loadAll').mockResolvedValueOnce([ + createStudyTableRowData({ + daysInStudy: 655, + numOfParticipants: 2, + study: 'LA', + updatedAt: '2024-01-05T06:00:00.000Z', + }), + ]) + }) + it('renders the studies page header', async () => { + renderPage() + + await waitFor(() => { + expect(screen.getByText('Studies')).toBeInTheDocument() + }) + }) + + it('renders the studies page table', async () => { + renderPage() + + const table = screen.getByRole('table') + + await waitFor(() => { + expect(table).toBeInTheDocument() + }) + }) +}) diff --git a/views/pages/StudiesPage/index.jsx b/views/pages/StudiesPage/index.jsx new file mode 100644 index 00000000..5b770b4f --- /dev/null +++ b/views/pages/StudiesPage/index.jsx @@ -0,0 +1,50 @@ +import React, { useEffect, useState } from 'react' + +import { Box } from '@mui/material' + +import { SORT_DIRECTION } from '../../../constants' +import api from '../../api' +import PageHeader from '../../components/PageHeader' +import useTableSort from '../../hooks/useTableSort' +import StudiesTable from '../../tables/StudiesTable' + +const siteName = 'siteName' +const study = 'study' + +const StudiesPage = () => { + const [studies, setStudies] = useState([]) + const { onSort, sortDirection, sortBy } = useTableSort(study) + const loadStudies = async () => { + const sortParams = { + ...(sortBy ? { sortBy: sortBy === siteName ? study : sortBy } : {}), + ...(sortDirection ? { sortDirection } : {}), + } + const data = await api.userStudies.loadAll({ sort: sortParams }) + + setStudies(data) + } + const handleRequestSort = (_event, property) => { + const isAsc = sortDirection === SORT_DIRECTION.ASC + + return onSort(property, isAsc ? SORT_DIRECTION.DESC : SORT_DIRECTION.ASC) + } + + useEffect(() => { + loadStudies() + }, [sortBy, sortDirection]) + + return ( + + + + + ) +} + +export default StudiesPage diff --git a/views/pages/ViewChartPage/ViewChartPage.css b/views/pages/ViewChartPage/ViewChartPage.css new file mode 100644 index 00000000..5aa34149 --- /dev/null +++ b/views/pages/ViewChartPage/ViewChartPage.css @@ -0,0 +1,10 @@ +.ChartPageDetails { + display: grid; + grid-template-columns: repeat(12, 1fr); + padding-bottom: 20px; +} +.ChartPageOwner { + display: flex; + grid-column-start: 4; + grid-column-end: 12; +} diff --git a/views/pages/ViewChartPage/index.jsx b/views/pages/ViewChartPage/index.jsx new file mode 100644 index 00000000..7d629ba7 --- /dev/null +++ b/views/pages/ViewChartPage/index.jsx @@ -0,0 +1,225 @@ +import React, { useEffect, useState } from 'react' + +import { Box, Typography, useMediaQuery } from '@mui/material' +import dayjs from 'dayjs' +import advanced from 'dayjs/plugin/advancedFormat' +import timezone from 'dayjs/plugin/timezone' +import utc from 'dayjs/plugin/utc' +import FileSaver from 'file-saver' +import qs from 'qs' +import { useParams, useLocation, useNavigate } from 'react-router-dom' + +import { SORT_DIRECTION, fontSize, TOTALS } from '../../../constants' +import api from '../../api' +import BarGraph from '../../components/BarGraph' +import ChartDescription from '../../components/ChartDescription' +import GraphTable from '../../components/GraphTable' +import PageHeader from '../../components/PageHeader' +import ChartFilterForm from '../../forms/ChartFilterForm' +import useTableSort from '../../hooks/useTableSort' +import { ChartFiltersModel } from '../../models' +import { apiRoutes, routes } from '../../routes/routes' + +import './ViewChartPage.css' + +dayjs.extend(utc) +dayjs.extend(timezone) +dayjs.extend(advanced) + +const tooltipWidth = 235 +const staticYPosition = 75 + +const ViewChartPage = () => { + const { search } = useLocation() + const { chart_id } = useParams() + const [graph, setGraph] = useState(null) + const [xAxisWidth, setXAxisWidth] = useState(0) + const [expanded, setExpanded] = useState(false) + const [tooltipPosition, setTooltipPosition] = useState({}) + const [displayLeft, setDisplayLeft] = useState(true) + const [page, setPage] = useState(0) + const [rowsPerPage, setRowsPerPage] = useState(5) + const shortDescription = graph?.description?.substring(0, 296) + '...' || '' + const handleDescriptionExpand = () => setExpanded(!expanded) + const navigate = useNavigate() + const { onSort, sortDirection, sortBy } = useTableSort('site') + const onSubmit = async (formValues) => { + const filters = ChartFiltersModel.formValuesToRequestFilters( + formValues, + graph.filters + ) + + const newRoute = routes.viewChart(chart_id, { filters }) + + navigate(newRoute) + } + const fetchGraph = async (chart_id, filters) => + await api.charts.chartsData.show(chart_id, { filters }) + + const fetchGraphTableCSV = async (chart_id, filters, filename) => { + const res = await fetch(apiRoutes.chartCsv.show(chart_id, { filters }), { + headers: { + 'Content-Type': 'text/csv', + }, + method: 'GET', + }) + const graphTableData = await res.blob() + + FileSaver.saveAs(graphTableData, `${filename}.csv`) + + return res + } + const handleNavigateToChartPage = () => navigate('/charts') + const handleTooltipPosition = ({ chartWidth, xCoordinate }) => { + const isXCoordinateGreater = chartWidth - tooltipWidth < xCoordinate + + if (isXCoordinateGreater) { + setTooltipPosition({ x: xCoordinate - tooltipWidth, y: staticYPosition }) + setDisplayLeft(false) + } else { + setTooltipPosition({ x: xCoordinate, y: staticYPosition }) + setDisplayLeft(true) + } + } + const graphDisplayParams = { + sm: { + isSm: useMediaQuery('(max-width:600px)'), + barsToDisplay: 3, + }, + tablet: { + isTablet: useMediaQuery('(min-width:600px) and (max-width:900px)'), + barsToDisplay: 4, + }, + md: { + isMd: useMediaQuery('(min-width:1100px) and (max-width:1500px)'), + barsToDisplay: 6, + }, + lg: { + isLg: useMediaQuery('(min-width:2000px)'), + barsToDisplay: 10, + }, + } + const handleChangePage = (_, newPage) => setPage(newPage) + const handleChangeRowsPerPage = (event) => { + setRowsPerPage(parseInt(event.target.value, 10)) + setPage(0) + } + const graphTablePredicate = (a, b) => { + if (a[sortBy] === TOTALS || b[sortBy] === TOTALS) return 1 + if (b[sortBy] < a[sortBy]) { + return sortDirection === SORT_DIRECTION.ASC ? 1 : -1 + } + if (b[sortBy] > a[sortBy]) { + return sortDirection === SORT_DIRECTION.ASC ? -1 : 1 + } + return 0 + } + const visibleRows = () => { + if (!graph) return [] + + return graph.graphTable.tableRows + .slice(page * rowsPerPage, page * rowsPerPage + rowsPerPage) + .sort(graphTablePredicate) + } + + useEffect(() => { + const parsedQuery = qs.parse(search.replace(/^\?/, '')) + + fetchGraph(chart_id, parsedQuery.filters).then((newGraph) => { + setGraph(newGraph) + }) + }, [chart_id, search]) + + if (!graph) return
Loading...
+ + const shouldDisplaySiteName = () => { + if (graphDisplayParams.sm.isSm) + return graph.dataBySite.length <= graphDisplayParams.sm.barsToDisplay + if (graphDisplayParams.tablet.isTablet) + return graph.dataBySite.length <= graphDisplayParams.tablet.barsToDisplay + if (graphDisplayParams.md.isMd) + return graph.dataBySite.length <= graphDisplayParams.md.barsToDisplay + if (graphDisplayParams.lg.isLg) + return graph.dataBySite.length <= graphDisplayParams.lg.barsToDisplay + } + const useSiteName = shouldDisplaySiteName() + + return ( + + + } + /> +
+ + Last Modified: + {graph.lastModified + ? dayjs(graph.lastModified).format('MMM D YYYY @ hh:mm Z') + : ''} + + + + Created by: + + + {` ${graph.chartOwner.display_name}`} + + +
+ + + {!!graph.dataBySite.length && ( + + )} + + ) +} + +export default ViewChartPage diff --git a/views/routes/index.jsx b/views/routes/index.jsx new file mode 100644 index 00000000..85136846 --- /dev/null +++ b/views/routes/index.jsx @@ -0,0 +1,76 @@ +import { Routes, Route, Navigate, BrowserRouter } from 'react-router-dom' + +import { routes } from './routes' +import AuthenticatedRoute from '../hoc/AuthenticatedRoute' +import HeroLayout from '../layouts/HeroLayout' +import MainLayout from '../layouts/MainLayout' +import AccountPage from '../pages/AccountPage' +import AdminPage from '../pages/AdminPage' +import AdminCheck from '../pages/AdminPage/AdminCheck' +import ChartsPage from '../pages/ChartsPage' +import ConfigurationsPage from '../pages/ConfigurationsPage' +import DashboardPage from '../pages/DashboardPage' +import EditChartPage from '../pages/EditChartPage' +import EditConfigPage from '../pages/EditConfigPage' +import GraphPage from '../pages/GraphPage' +import NewChartPage from '../pages/NewChartPage' +import NewConfigPage from '../pages/NewConfigPage' +import ParticipantsPage from '../pages/ParticipantsPage' +import RegistrationPage from '../pages/RegistrationPage' +import ResetPasswordPage from '../pages/ResetPasswordPage' +import SignInPage from '../pages/SignInPage' +import StudiesPage from '../pages/StudiesPage' +import ViewChartPage from '../pages/ViewChartPage' + +const Router = () => { + return ( + + + }> + } + /> + } /> + } /> + } /> + + + + + + } + > + } /> + } /> + } + /> + } /> + } /> + } /> + + + + } + /> + } /> + } /> + } /> + } /> + } /> + } /> + } /> + + + + ) +} + +export default Router diff --git a/views/routes/routes.js b/views/routes/routes.js new file mode 100644 index 00000000..084ae257 --- /dev/null +++ b/views/routes/routes.js @@ -0,0 +1,106 @@ +import qs from 'qs' + +const apiPath = '/api/v1' + +export const routes = { + admin: '/admin', + charts: '/charts', + configurations: '/configurations', + contactUs: '/contact-us', + dashboard: (study = ':study', subject = ':subject') => + `${routes.dashboards}/${study}/${subject}`, + dashboards: `/dashboard`, + editChart: (chartId) => `/charts/${chartId}/edit`, + editChartPage: '/charts/:chart_id/edit', + editConfigPage: '/config/:config_id/edit', + editConfiguration: (configId) => `/config/${configId}/edit`, + help: '/help', + home: `/`, + logout: '/logout', + main: '/main', + newChart: '/charts/new', + newConfiguration: '/configs/new', + participants: '/participants', + privacyPolicy: '/privacy-policy', + previewProfile: '/preview-profile', + termsOfUse: '/terms-of-use', + resetpw: '/reset-password', + register: '/register', + signin: '/signin', + studyDashboard: (study = ':study') => `${routes.dashboards}/${study}`, + studies: '/studies', + userAccount: '/user-account', + viewChart: (chartId, queryParams) => + queryParams + ? `/charts/${chartId}${qs.stringify(queryParams, { + addQueryPrefix: true, + })}` + : `/charts/${chartId}`, + viewChartPage: '/charts/:chart_id', + viewConfiguration: (configId) => `/u/configure?s=view&id=${configId}`, +} + +export const apiRoutes = { + admin: { + users: { + show: (uid) => `${apiPath}/admin/users/${uid}`, + }, + studies: { + all: `${apiPath}/admin/search/studies`, + }, + }, + assessments: { + index: `${apiPath}/assessments`, + }, + auth: { + login: `${apiPath}/login`, + logout: `${apiPath}/logout`, + me: `${apiPath}/me`, + resetPassword: `${apiPath}/resetpw`, + signup: `${apiPath}/signup`, + }, + chart: { + show: (chart_id) => `${apiPath}/charts/${chart_id}`, + index: `${apiPath}/charts`, + }, + chartData: { + show: (chartId) => `${apiPath}/charts/${chartId}/data`, + }, + chartCsv: { + show: (chartId, queryParams) => + queryParams + ? `${apiPath}/charts/${chartId}/data?${qs.stringify(queryParams)}` + : `${apiPath}/charts/${chartId}/data`, + }, + configurations: { + activeUserConfigurations: (uid) => `${apiPath}/users/${uid}/active-configs`, + userConfigurations: (uid) => `${apiPath}/users/${uid}/configs`, + userConfiguration: (uid, config_id) => + `${apiRoutes.configurations.userConfigurations(uid)}/${config_id}`, + configurationFileUpload: (uid) => + `${apiRoutes.configurations.userConfigurations(uid)}/file`, + }, + dashboards: { + show: (study = ':study', subject = ':subject') => + `${apiPath}/dashboards/${study}/${subject}`, + }, + duplicateChart: { + show: `${apiPath}/charts/duplicate`, + }, + participants: { + index: `${apiPath}/participants`, + }, + preferences: (uid) => `${apiPath}/users/${uid}/preferences`, + shareChart: { + show: (chart_id) => `${apiPath}/charts/${chart_id}/share`, + }, + userStudies: { + index: `${apiPath}/user-studies`, + }, + subjects: (studies) => `${apiPath}/subjects?q=${JSON.stringify(studies)}`, + subject: `${apiPath}/subjects`, + users: { + index: `${apiPath}/users`, + show: (uid) => `${apiPath}/users/${uid}`, + }, +} diff --git a/views/tables/AdminUsersTable/AdminUsersTable.test.jsx b/views/tables/AdminUsersTable/AdminUsersTable.test.jsx new file mode 100644 index 00000000..7a79c494 --- /dev/null +++ b/views/tables/AdminUsersTable/AdminUsersTable.test.jsx @@ -0,0 +1,34 @@ +import { screen } from '@testing-library/react' + +import AdminUsersTable from '.' +import { createUser } from '../../../test/fixtures' +import renderPage from '../../../test/PageRenderer' + +describe('AdminUsersTable', () => { + const users = [ + createUser({ + uid: 'user', + mail: 'test@example.com', + role: 'admin', + }), + createUser({ + uid: 'foo', + mail: 'foo@example.com', + role: 'member', + }), + ] + it('renders the table', () => { + renderPage(AdminUsersTable, { + users, + onAccess: jest.fn(), + onUserBlock: jest.fn(), + onResetPassword: jest.fn(), + onDeleteUser: jest.fn(), + onChangeAccountExpiration: jest.fn(), + }) + + expect(screen.getByRole('table')).toBeInTheDocument() + expect(screen.getByText('test@example.com')).toBeInTheDocument() + expect(screen.getByText('foo@example.com')).toBeInTheDocument() + }) +}) diff --git a/views/tables/AdminUsersTable/index.jsx b/views/tables/AdminUsersTable/index.jsx new file mode 100644 index 00000000..64518a9b --- /dev/null +++ b/views/tables/AdminUsersTable/index.jsx @@ -0,0 +1,118 @@ +import React from 'react' + +import { Settings, Clear, LockOpen } from '@mui/icons-material' +import { IconButton, Checkbox } from '@mui/material' +import { DatePicker } from '@mui/x-date-pickers/DatePicker' +import dayjs from 'dayjs' + +import Table from '../Table' + +const AdminUsersTable = (props) => { + const headers = [ + { + dataProperty: 'uid', + label: 'Username', + sortable: false, + }, + { + dataProperty: 'display_name', + label: 'Name', + sortable: false, + }, + { + dataProperty: 'mail', + label: 'Email', + sortable: false, + }, + { + dataProperty: 'role', + label: 'Role', + sortable: false, + }, + { + dataProperty: 'access', + label: 'Access', + sortable: false, + }, + { + dataProperty: 'account_expires', + label: 'Account Expiration', + sortable: false, + }, + { + dataProperty: 'force_reset_pw', + label: 'Reset Password', + sortable: false, + }, + { + dataProperty: 'blocked', + label: 'Inactive', + sortable: false, + }, + { + dataProperty: 'delete', + label: 'Delete', + sortable: false, + }, + ] + + const cellRenderer = (user, property, rowIndex) => { + switch (property) { + case 'access': + return ( +
+ props.onAccess(rowIndex)} /> +
+ ) + case 'account_expires': + return ( + + props.onChangeAccountExpiration(rowIndex, value) + } + /> + ) + case 'force_reset_pw': + return ( +
+ props.onResetPassword(rowIndex)} + > + + +
+ ) + case 'blocked': + return ( + props.onUserBlock(rowIndex)} + /> + ) + case 'delete': + return ( +
+ props.onDeleteUser(rowIndex)} + > + + +
+ ) + default: + return user[property] + } + } + + return ( +
+ ) +} + +export default AdminUsersTable diff --git a/views/tables/ChartsTable/ChartsTable.css b/views/tables/ChartsTable/ChartsTable.css new file mode 100644 index 00000000..eed3b298 --- /dev/null +++ b/views/tables/ChartsTable/ChartsTable.css @@ -0,0 +1,3 @@ +.ChartsTable_Profile { + display: flex; +} diff --git a/views/tables/ChartsTable/ChartsTable.test.jsx b/views/tables/ChartsTable/ChartsTable.test.jsx new file mode 100644 index 00000000..c63c0432 --- /dev/null +++ b/views/tables/ChartsTable/ChartsTable.test.jsx @@ -0,0 +1,214 @@ +import React from 'react' + +import { render, screen, within } from '@testing-library/react' +import userEvent from '@testing-library/user-event' +import dayjs from 'dayjs' +import { MemoryRouter } from 'react-router-dom' + +import ChartsTable from '.' +import { DATE_FORMAT } from '../../../constants' +import { createChart, createUser } from '../../../test/fixtures' +import { routes } from '../../routes/routes' + +describe(ChartsTable, () => { + const user = createUser({ uid: 'user', favoriteCharts: ['2'] }) + + const charts = [ + createChart({ + title: 'third chart', + updatedAt: '2022-10-11T16:33:46.485Z', + owner: 'bar', + chartOwner: { + display_name: 'Jack Jackson', + }, + favorite: true, + }), + createChart({ + title: 'first chart', + updatedAt: '2023-06-28T15:43:23.789Z', + owner: user.uid, + chartOwner: { display_name: 'John Johnson' }, + favorite: false, + }), + createChart({ + title: 'second chart', + updatedAt: '2022-11-10T00:01:04.713Z', + owner: 'foo', + chartOwner: { + display_name: 'Jane Janeson', + }, + favorite: false, + }), + ] + const defaultProps = { + charts, + onDelete: () => {}, + onDuplicate: () => {}, + onShare: () => {}, + onFavorite: () => {}, + user, + } + const renderChart = (props = defaultProps) => + render( + + + + ) + const elements = { + editLink: () => screen.getByTestId('edit'), + deleteBtn: () => screen.getByText('Delete'), + duplicateBtn: () => screen.getByText('Duplicate'), + shareBtn: () => screen.getByText('Share'), + favoriteCheckbox: (chart) => + screen.getByRole('checkbox', { name: chart._id }), + tableRow: (tableRow) => screen.getByTestId(`row-${tableRow}`), + } + const actions = { + openTableRowMenu: async (chart) => + await userEvent.click(screen.getByTestId(chart._id)), + deleteChart: async (chart) => { + await actions.openTableRowMenu(chart) + await userEvent.click(elements.deleteBtn()) + }, + duplicateChart: async (chart) => { + await actions.openTableRowMenu(chart) + await userEvent.click(elements.duplicateBtn()) + }, + shareChart: async (chart) => { + await actions.openTableRowMenu(chart) + await userEvent.click(elements.shareBtn()) + }, + favoriteChart: async () => { + await userEvent.click(elements.tableRow(2)).getByRole('checkbox') + }, + } + + it('renders charts', () => { + renderChart() + + expect( + within(elements.tableRow(0)).getByText(charts[0].title) + ).toBeInTheDocument() + expect( + within(elements.tableRow(0)).getByText(charts[0].chartOwner.display_name) + ).toBeInTheDocument() + expect( + within(elements.tableRow(0)).getByText( + dayjs(charts[0].updatedAt).format(DATE_FORMAT) + ) + ).toBeInTheDocument() + expect(within(elements.tableRow(0)).getByRole('checkbox')).toBeChecked() + + expect( + within(elements.tableRow(1)).getByText(charts[1].title) + ).toBeInTheDocument() + expect( + within(elements.tableRow(1)).getByText(charts[1].chartOwner.display_name) + ).toBeInTheDocument() + expect( + within(elements.tableRow(1)).getByText( + dayjs(charts[1].updatedAt).format(DATE_FORMAT) + ) + ).toBeInTheDocument() + expect(within(elements.tableRow(1)).getByRole('checkbox')).not.toBeChecked() + + expect( + within(elements.tableRow(2)).getByText(charts[2].title) + ).toBeInTheDocument() + expect( + within(elements.tableRow(2)).getByText(charts[2].chartOwner.display_name) + ).toBeInTheDocument() + expect( + within(elements.tableRow(2)).getByText( + dayjs(charts[2].updatedAt).format(DATE_FORMAT) + ) + ).toBeInTheDocument() + expect(within(elements.tableRow(2)).getByRole('checkbox')).not.toBeChecked() + }) + + it('renders a menu of chart actions', async () => { + renderChart() + + await actions.openTableRowMenu(charts[1]) + + expect(elements.editLink()).toHaveAttribute( + 'href', + routes.editChart(charts[1]._id) + ) + expect(elements.deleteBtn()).toBeInTheDocument() + expect(elements.duplicateBtn()).toBeInTheDocument() + expect(elements.shareBtn()).toBeInTheDocument() + }) + + describe('when the user is the chart owner', () => { + it('calls the onDelete prop when "delete" is clicked', async () => { + const props = { ...defaultProps, onDelete: jest.fn() } + + renderChart(props) + await actions.deleteChart(charts[1]) + + expect(props.onDelete).toHaveBeenCalledWith(charts[1]) + }) + + it('calls the onDuplicate prop when "duplicate" is clicked', async () => { + const props = { ...defaultProps, onDuplicate: jest.fn() } + + renderChart(props) + await actions.duplicateChart(charts[1]) + + expect(props.onDuplicate).toHaveBeenCalledWith(charts[1]) + }) + + it('calls the onShare prop when "share" is clicked', async () => { + const props = { ...defaultProps, onShare: jest.fn() } + + renderChart(props) + await actions.shareChart(charts[0]) + + expect(props.onShare).toHaveBeenCalledWith(charts[0]) + }) + }) + + describe('when the user is not the chart owner', () => { + it('does not call the onDelete prop when "delete" is clicked', async () => { + expect.assertions(1) + const props = { ...defaultProps, onDelete: jest.fn() } + + renderChart(props) + + try { + await actions.deleteChart(charts[0]) + } catch { + expect(props.onDelete).not.toHaveBeenCalled() + } + }) + + it('calls the onDuplicate prop when "duplicate" is clicked', async () => { + const props = { ...defaultProps, onDuplicate: jest.fn() } + + renderChart(props) + await actions.duplicateChart(charts[1]) + + expect(props.onDuplicate).toHaveBeenCalledWith(charts[1]) + }) + + it('calls the onShare prop when "share" is clicked', async () => { + const props = { ...defaultProps, onShare: jest.fn() } + + renderChart(props) + await actions.shareChart(charts[1]) + + expect(props.onShare).toHaveBeenCalledWith(charts[1]) + }) + }) + describe('when user favorites a chart', () => { + it('calls the onFavorite prop when star icon is clicked', async () => { + const props = { ...defaultProps, onFavorite: jest.fn() } + + renderChart(props) + await userEvent.click(within(elements.tableRow(2)).getByRole('checkbox')) + + expect(props.onFavorite).toHaveBeenCalledWith(charts[2]) + }) + }) +}) diff --git a/views/tables/ChartsTable/index.jsx b/views/tables/ChartsTable/index.jsx new file mode 100644 index 00000000..3a5d6601 --- /dev/null +++ b/views/tables/ChartsTable/index.jsx @@ -0,0 +1,162 @@ +import React from 'react' + +import { + Star, + StarBorder, + ContentCopy, + Edit, + Delete, + Share, +} from '@mui/icons-material' +import { Typography, Checkbox } from '@mui/material' +import dayjs from 'dayjs' +import { Link } from 'react-router-dom' + +import { SORT_DIRECTION, DATE_FORMAT } from '../../../constants' +import { ChartModel } from '../../models/' +import { routes } from '../../routes/routes' +import Table from '../Table' +import TableMenu from '../Table/TableMenu' + +import './ChartsTable.css' + +const ChartsTable = ({ + charts, + maxRows, + onDelete, + onDuplicate, + onFavorite, + onShare, + onSort, + sortable, + sortDirection, + sortProperty, + user, +}) => { + const headers = [ + { + dataProperty: 'title', + label: 'Chart', + sortable: !!sortable, + }, + { + dataProperty: 'updatedAt', + label: 'Date Modified', + sortable: !!sortable, + }, + { + dataProperty: 'owner', + label: 'Created By', + sortable: !!sortable, + }, + { + dataProperty: 'star', + label: '', + sortable: false, + }, + { + dataProperty: 'info', + dataAlign: 'right', + label: '', + sortable: false, + }, + ] + const handleRequestSort = (_event, property) => { + const isAsc = + sortProperty === property && sortDirection === SORT_DIRECTION.ASC + + return onSort(property, isAsc ? SORT_DIRECTION.DESC : SORT_DIRECTION.ASC) + } + const cellRenderer = (chart, property) => { + switch (property) { + case 'info': { + const chartOwnedByUser = ChartModel.isOwnedByUser(chart, user) + + return ( + onDelete(chart), + disabled: !chartOwnedByUser, + text: 'Delete', + }, + { + Icon: ContentCopy, + onClick: () => onDuplicate(chart), + text: 'Duplicate', + }, + { + Icon: Share, + onClick: () => onShare(chart), + text: 'Share', + }, + ]} + /> + ) + } + case 'owner': + return ( +
+ + {chart['chartOwner'].display_name} + +
+ ) + case 'star': + return ( + } + checked={chart.favorite} + checkedIcon={} + onChange={() => onFavorite(chart)} + sx={{ + border: 1, + borderRadius: '8px', + borderColor: 'primary.light', + }} + /> + ) + case 'title': { + const viewChart = routes.viewChart(chart._id) + + return ( + + + {chart[property]} + + + ) + } + case 'updatedAt': + return chart[property] ? dayjs(chart[property]).format(DATE_FORMAT) : '' + default: + return chart[property] + } + } + + return ( +
+ ) +} + +export default ChartsTable diff --git a/views/tables/ConfigurationsTable/ConfigurationsTable.test.jsx b/views/tables/ConfigurationsTable/ConfigurationsTable.test.jsx new file mode 100644 index 00000000..8eb219ec --- /dev/null +++ b/views/tables/ConfigurationsTable/ConfigurationsTable.test.jsx @@ -0,0 +1,188 @@ +import React from 'react' + +import { render, screen, within } from '@testing-library/react' +import userEvent from '@testing-library/user-event' + +import ConfigurationsTable from '.' +import { createUser, createConfiguration } from '../../../test/fixtures' + +describe('ConfigurationsTable', () => { + const user = createUser({ uid: 'user', preferences: { config: '1' } }) + const configurations = [ + createConfiguration({ + name: 'config1', + owner: user.uid, + owner_display_name: ['User'], + readers: ['user', 'foo', 'bar'], + }), + createConfiguration({ + _id: '2', + name: 'config2', + owner: 'foo', + owner_display_name: ['Foo'], + readers: ['foo'], + }), + createConfiguration({ + _id: '3', + name: 'config3', + readers: ['user', 'bar'], + owner: 'bar', + owner_display_name: ['Bar'], + }), + ] + const defaultProps = { + configurations, + onDefaultChange: () => {}, + onDelete: () => {}, + onDuplicate: () => {}, + onEdit: () => {}, + onShare: () => {}, + user, + } + const elements = { + editBtn: () => screen.getByTestId('EditIcon'), + deleteBtn: () => screen.getByTestId('DeleteIcon'), + duplicateBtn: () => screen.getByTestId('ContentCopyIcon'), + shareBtn: () => screen.getByTestId('ShareIcon'), + setDefaultBtn: () => screen.getByTestId('SettingsApplicationsIcon'), + tableRow: (tableRow) => screen.getByTestId(`row-${tableRow}`), + } + const renderConfigurationsTable = (props = defaultProps) => + render() + const actions = { + openTableRowMenu: async (configuration) => + await userEvent.click(screen.getByTestId(configuration._id)), + deleteConfiguration: async (configuration) => { + await actions.openTableRowMenu(configuration) + await userEvent.click(elements.deleteBtn()) + }, + duplicateConfiguration: async (configuration) => { + await actions.openTableRowMenu(configuration) + await userEvent.click(elements.duplicateBtn()) + }, + shareConfiguration: async (configuration) => { + await actions.openTableRowMenu(configuration) + await userEvent.click(elements.shareBtn()) + }, + setDefaultConfiguration: async (configuration) => { + await actions.openTableRowMenu(configuration) + await userEvent.click(elements.setDefaultBtn()) + }, + } + + it('renders chart', () => { + renderConfigurationsTable() + + expect( + within(elements.tableRow(0)).getByText(configurations[0].name) + ).toBeInTheDocument() + expect( + within(elements.tableRow(0)).getByText( + configurations[0].owner_display_name[0] + ) + ).toBeInTheDocument() + expect( + within(elements.tableRow(0)).getByText('Default') + ).toBeInTheDocument() + + expect( + within(elements.tableRow(1)).getByText(configurations[1].name) + ).toBeInTheDocument() + expect( + within(elements.tableRow(1)).getByText( + configurations[1].owner_display_name[0] + ) + ).toBeInTheDocument() + + expect( + within(elements.tableRow(2)).getByText(configurations[2].name) + ).toBeInTheDocument() + expect( + within(elements.tableRow(2)).getByText( + configurations[2].owner_display_name[0] + ) + ).toBeInTheDocument() + }) + + it('renders a menu of actions', async () => { + renderConfigurationsTable() + await actions.openTableRowMenu(configurations[0]) + + expect(elements.editBtn()).toBeInTheDocument() + expect(elements.deleteBtn()).toBeInTheDocument() + expect(elements.duplicateBtn()).toBeInTheDocument() + expect(elements.shareBtn()).toBeInTheDocument() + expect(elements.setDefaultBtn()).toBeInTheDocument() + }) + + describe('when the user is the configuration owner', () => { + it('calls the onDelete prop when "delete" is clicked', async () => { + const props = { ...defaultProps, onDelete: jest.fn() } + + renderConfigurationsTable(props) + await actions.deleteConfiguration(configurations[0]) + + expect(props.onDelete).toHaveBeenCalledWith(configurations[0]._id) + }) + + it('calls the onDuplicate prop when "duplicate" is clicked', async () => { + const props = { ...defaultProps, onDuplicate: jest.fn() } + + renderConfigurationsTable(props) + await actions.duplicateConfiguration(configurations[0]) + + expect(props.onDuplicate).toHaveBeenCalledWith(configurations[0]) + }) + + it('calls the onShare prop when "share" is clicked', async () => { + const props = { ...defaultProps, onShare: jest.fn() } + + renderConfigurationsTable(props) + await actions.shareConfiguration(configurations[0]) + + expect(props.onShare).toHaveBeenCalledWith(configurations[0]) + }) + + it('calls the onDefaultChange prop when "share" is clicked', async () => { + const props = { ...defaultProps, onDefaultChange: jest.fn() } + + renderConfigurationsTable(props) + await actions.setDefaultConfiguration(configurations[0]) + + expect(props.onDefaultChange).toHaveBeenCalledWith(configurations[0]._id) + }) + }) + + describe('when the user is not the configuration owner', () => { + it('does not call the onDelete prop when "delete" is clicked', async () => { + expect.assertions(1) + const props = { ...defaultProps, onDelete: jest.fn() } + + renderConfigurationsTable(props) + + try { + await actions.deleteConfiguration(configurations[1]) + } catch { + expect(props.onDelete).not.toHaveBeenCalled() + } + }) + + it('calls the onDuplicate prop when "duplicate" is clicked', async () => { + const props = { ...defaultProps, onDuplicate: jest.fn() } + + renderConfigurationsTable(props) + await actions.duplicateConfiguration(configurations[1]) + + expect(props.onDuplicate).toHaveBeenCalledWith(configurations[1]) + }) + + it('calls the onDefaultChange when "set as default" is clicked', async () => { + const props = { ...defaultProps, onDefaultChange: jest.fn() } + + renderConfigurationsTable(props) + await actions.setDefaultConfiguration(configurations[1]) + + expect(props.onDefaultChange).toHaveBeenCalledWith(configurations[1]._id) + }) + }) +}) diff --git a/views/tables/ConfigurationsTable/index.jsx b/views/tables/ConfigurationsTable/index.jsx new file mode 100644 index 00000000..96c84875 --- /dev/null +++ b/views/tables/ConfigurationsTable/index.jsx @@ -0,0 +1,152 @@ +import React from 'react' + +import { + Share, + Delete, + ContentCopy, + Edit, + SettingsApplications, +} from '@mui/icons-material' +import { Chip } from '@mui/material' + +import { borderRadius, fontSize } from '../../../constants' +import { UserConfigModel } from '../../models' +import Table from '../Table' +import TableMenu from '../Table/TableMenu' + +const ConfigurationsTable = (props) => { + const { + configurations, + onDefaultChange, + onDelete, + onDuplicate, + onEdit, + onShare, + user, + maxRows, + } = props + const headers = [ + { dataProperty: 'name', label: 'Configuration Name', sortable: false }, + { + dataProperty: 'owner_display_name', + label: 'Created By', + sortable: false, + }, + { + dataProperty: 'status', + label: 'Status', + sortable: false, + }, + { + dataProperty: 'default', + label: '', + sortable: false, + }, + + { + dataProperty: 'info', + dataAlign: 'right', + label: '', + sortable: false, + }, + ] + + const cellRenderer = (configuration, property) => { + const currentConfiguration = user.preferences.config === configuration._id + const ownsConfig = user.uid === configuration.owner + + switch (property) { + case 'default': + return ( + currentConfiguration && ( + + ) + ) + case 'info': + return ( + onEdit(configuration._id), + Icon: Edit, + text: 'Edit', + }, + { + disabled: !ownsConfig, + onClick: () => onShare(configuration), + Icon: Share, + text: 'Share', + }, + { + disabled: !ownsConfig, + onClick: () => onDelete(configuration._id), + Icon: Delete, + text: 'Delete', + }, + { + onClick: () => onDuplicate(configuration), + Icon: ContentCopy, + text: 'Duplicate', + }, + { + onClick: () => onDefaultChange(configuration._id), + Icon: SettingsApplications, + text: 'Set as default', + }, + ]} + /> + ) + case 'status': + return UserConfigModel.isActive(configuration, property) ? ( + + ) : ( + + ) + default: + return configuration[property] + } + } + + return ( +
+ ) +} + +export default ConfigurationsTable diff --git a/views/tables/ParticipantsTable/index.jsx b/views/tables/ParticipantsTable/index.jsx new file mode 100644 index 00000000..0aa69e81 --- /dev/null +++ b/views/tables/ParticipantsTable/index.jsx @@ -0,0 +1,165 @@ +import React from 'react' + +import { Star, StarBorder } from '@mui/icons-material' +import { Checkbox, Typography, Tooltip } from '@mui/material' +import dayjs from 'dayjs' +import isToday from 'dayjs/plugin/isToday' +import isYesterday from 'dayjs/plugin/isYesterday' +import { Link } from 'react-router-dom' + +import { SORT_DIRECTION } from '../../../constants' +import { SITE_NAMES } from '../../../server/utils/siteNames' +import StatusChip from '../../components/StatusChip' +import { routes } from '../../routes/routes' +import Table from '../Table' + +dayjs.extend(isYesterday) +dayjs.extend(isToday) + +const ParticipantsTable = (props) => { + const { + onSort, + onStar, + participants, + sortable, + sortDirection, + sortProperty, + maxRows, + } = props + const handleRequestSort = (_event, property) => { + const isAsc = + sortProperty === property && sortDirection === SORT_DIRECTION.ASC + + return onSort(property, isAsc ? SORT_DIRECTION.DESC : SORT_DIRECTION.ASC) + } + const headers = [ + { + dataProperty: 'participant', + label: 'Participant ID', + sortable: !!sortable, + }, + { + dataProperty: 'study', + label: 'Study', + sortable: !!sortable, + }, + { + dataProperty: 'daysInStudy', + label: 'Days In Study', + sortable: !!sortable, + }, + { + dataProperty: 'synced', + label: 'Last synced', + sortable: !!sortable, + }, + { + dataProperty: 'Active', + label: 'Status', + sortable: !!sortable, + }, + { + dataProperty: 'star', + label: '', + sortable: false, + }, + ] + const cellRenderer = (participant, property) => { + switch (property) { + case 'synced': { + const syncedValue = participant[property] + const participantSyncedDate = dayjs(syncedValue) + + if (syncedValue && participantSyncedDate.isValid()) { + const isToday = participantSyncedDate.isToday() + const isYesterday = participantSyncedDate.isYesterday() + const isTodayOrYesterday = isToday || isYesterday + + return ( + + {isToday + ? 'Today' + : isYesterday + ? 'Yesterday' + : participantSyncedDate.format('MMM-D-YYYY')} + + ) + } + + return '' + } + case 'participant': { + const { study } = participant + + return ( + + {participant[property]} + + ) + } + case 'Active': { + const isActive = participant[property] === 1 + + return + } + case 'star': + return ( + } + checked={participant.star} + checkedIcon={} + value={participant.participant} + onChange={onStar} + sx={{ + border: 1, + borderRadius: '8px', + borderColor: 'primary.light', + }} + /> + ) + case 'study': { + const participantProperty = participant[property] + const tooltipTitle = + SITE_NAMES[participantProperty] || participantProperty + + return ( + + + {participantProperty} + + + ) + } + default: + return participant[property] + } + } + + return ( +
+ ) +} + +export default ParticipantsTable diff --git a/views/tables/StudiesTable/StudiesTable.test.jsx b/views/tables/StudiesTable/StudiesTable.test.jsx new file mode 100644 index 00000000..da795bef --- /dev/null +++ b/views/tables/StudiesTable/StudiesTable.test.jsx @@ -0,0 +1,84 @@ +import React from 'react' + +import { render, screen, within } from '@testing-library/react' + +import StudiesTable from '.' +import { SITE_NAMES } from '../../../server/utils/siteNames' +import { createStudyTableRowData } from '../../../test/fixtures' + +describe(StudiesTable, () => { + const studies = [ + createStudyTableRowData({ + daysInStudy: 655, + numOfParticipants: 2, + study: 'LA', + updatedAt: '2024-01-05T06:00:00.000Z', + }), + createStudyTableRowData({ + daysInStudy: 1005, + numOfParticipants: 2, + study: 'MA', + updatedAt: '2024-01-05T06:00:00.000Z', + }), + createStudyTableRowData({ + daysInStudy: 105, + numOfParticipants: 2, + study: 'YA', + updatedAt: '2024-01-05T06:00:00.000Z', + }), + ] + const defaultProps = { + studies, + onDelete: () => {}, + onDuplicate: () => {}, + onShare: () => {}, + onFavorite: () => {}, + } + const tableRow = (rowNum) => screen.getByTestId(`row-${rowNum}`) + const renderTable = (props = defaultProps) => + render() + + it('renders the studies table', () => { + renderTable() + + expect(within(tableRow(0)).getByText(studies[0].study)).toBeInTheDocument() + expect( + within(tableRow(0)).getByText(SITE_NAMES[studies[0].study]) + ).toBeInTheDocument() + expect( + within(tableRow(0)).getByText(studies[0].daysInStudy) + ).toBeInTheDocument() + expect( + within(tableRow(0)).getByText(studies[0].numOfParticipants) + ).toBeInTheDocument() + expect( + within(tableRow(0)).getByText(studies[0].updatedAt) + ).toBeInTheDocument() + expect(within(tableRow(1)).getByText(studies[1].study)).toBeInTheDocument() + expect( + within(tableRow(1)).getByText(SITE_NAMES[studies[1].study]) + ).toBeInTheDocument() + expect( + within(tableRow(1)).getByText(studies[1].daysInStudy) + ).toBeInTheDocument() + expect( + within(tableRow(1)).getByText(studies[1].numOfParticipants) + ).toBeInTheDocument() + expect( + within(tableRow(1)).getByText(studies[1].updatedAt) + ).toBeInTheDocument() + expect(within(tableRow(2)).getByText(studies[2].study)).toBeInTheDocument() + expect( + within(tableRow(2)).getByText(SITE_NAMES[studies[2].study]) + ).toBeInTheDocument() + expect( + within(tableRow(2)).getByText(studies[2].daysInStudy) + ).toBeInTheDocument() + expect( + within(tableRow(2)).getByText(studies[2].numOfParticipants) + ).toBeInTheDocument() + expect( + within(tableRow(2)).getByText(studies[2].updatedAt) + ).toBeInTheDocument() + }) +}) diff --git a/views/tables/StudiesTable/index.jsx b/views/tables/StudiesTable/index.jsx new file mode 100644 index 00000000..0ed2949e --- /dev/null +++ b/views/tables/StudiesTable/index.jsx @@ -0,0 +1,64 @@ +import React from 'react' + +import dayjs from 'dayjs' + +import { SITE_NAMES } from '../../../server/utils/siteNames' +import Table from '../Table' + +const StudiesTable = (props) => { + const { onSort, studies, sortable, sortDirection, sortProperty } = props + + const headers = [ + { + dataProperty: 'study', + label: 'Study', + sortable: !!sortable, + }, + { + dataProperty: 'siteName', + label: 'Site', + sortable: !!sortable, + }, + { + dataProperty: 'daysInStudy', + label: 'Days In Study', + sortable: !!sortable, + }, + { + dataProperty: 'numOfParticipants', + label: 'No. of Participants', + sortable: !!sortable, + }, + { + dataProperty: 'updatedAt', + label: 'Last Updated', + sortable: !!sortable, + }, + ] + + const cellRenderer = (study, property) => { + switch (property) { + case 'updatedAt': { + return dayjs(study[property]).toISOString() + } + case 'siteName': { + return SITE_NAMES[study['study']] + } + default: + return study[property] + } + } + + return ( +
+ ) +} + +export default StudiesTable diff --git a/views/tables/Table/TableHead.jsx b/views/tables/Table/TableHead.jsx new file mode 100644 index 00000000..3dde02c4 --- /dev/null +++ b/views/tables/Table/TableHead.jsx @@ -0,0 +1,61 @@ +import React from 'react' + +import { + TableCell, + TableHead as MuiTableHead, + TableRow, + Box, + TableSortLabel, +} from '@mui/material' +import { visuallyHidden } from '@mui/utils' + +import { SORT_DIRECTION, fontSize } from '../../../constants' + +function TableHead(props) { + const { sortDirection, sortProperty, onRequestSort, headCells } = props + const createSortHandler = (property) => (event) => { + onRequestSort(event, property) + } + + return ( + + + {headCells.map((headCell) => { + const cellIsActive = sortProperty === headCell.dataProperty + const activeSortDirection = cellIsActive + ? sortDirection?.toLowerCase() + : undefined + + return ( + + {headCell.sortable ? ( + + {headCell.label} + {cellIsActive ? ( + + {sortDirection === SORT_DIRECTION.DESC + ? 'sorted descending' + : 'sorted ascending'} + + ) : null} + + ) : ( + headCell.label + )} + + ) + })} + + + ) +} + +export default TableHead diff --git a/views/tables/Table/TableMenu.jsx b/views/tables/Table/TableMenu.jsx new file mode 100644 index 00000000..b8703818 --- /dev/null +++ b/views/tables/Table/TableMenu.jsx @@ -0,0 +1,62 @@ +import React from 'react' + +import MoreVertIcon from '@mui/icons-material/MoreVert' +import { IconButton, Menu, MenuItem, MenuList, Typography } from '@mui/material' + +const MENU_ITEM_STYLES = { display: 'flex', gap: '32px' } +const COLOR_STYLES = { color: 'black.A100' } +const TableMenu = (props) => { + const { menuItems } = props + const [menuAnchor, setMenuAnchor] = React.useState(null) + const open = Boolean(menuAnchor) + const onClose = () => setMenuAnchor(null) + + return ( + <> + setMenuAnchor(event.currentTarget)} + color="primary" + > + + + + + {menuItems.map((menuItem, idx) => ( + { + menuItem.onClick() + onClose() + }} + data-testid={menuItem.testID} + disableRipple + disabled={menuItem.disabled} + to={menuItem.to} + sx={MENU_ITEM_STYLES} + > + + {menuItem.text} + + ))} + + + + ) +} + +export default TableMenu diff --git a/views/tables/Table/index.jsx b/views/tables/Table/index.jsx new file mode 100644 index 00000000..f82c874e --- /dev/null +++ b/views/tables/Table/index.jsx @@ -0,0 +1,121 @@ +import React from 'react' + +import { + Table as MuiTable, + TableBody, + TableCell, + TableContainer, + TableRow, + TablePagination, +} from '@mui/material' + +import TableHead from './TableHead' + +const firstCellStyles = (cellIndex) => { + if (cellIndex !== 0) { + return {} + } + + return { + borderLeftWidth: 1, + borderLeftStyle: 'solid', + borderLeftColor: 'grey.100', + borderBottomLeftRadius: 4, + borderTopLeftRadius: 4, + } +} + +const lastCellStyles = (cellIndex, headers) => { + if (cellIndex !== headers.length - 1) { + return {} + } + + return { + borderRightWidth: 1, + borderRightStyle: 'solid', + borderRightColor: 'grey.100', + borderBottomRightRadius: 4, + borderTopRightRadius: 4, + } +} + +const Table = (props) => { + const { + cellRenderer, + data, + headers, + handleChangePage, + handleChangeRowsPerPage, + handleRequestSort, + maxRows, + paginate, + page, + paginationCount, + rowsPerPage, + rowsPerPageOptions, + sortDirection, + sortProperty, + } = props + + const rows = maxRows && data.length > maxRows ? data.slice(0, maxRows) : data + + return ( + <> + + + + + {rows.map((rowData, rowIndex) => ( + + {headers.map((header, cellIndex) => ( + + {cellRenderer(rowData, header.dataProperty, rowIndex)} + + ))} + + ))} + + + + {paginate ? ( + + ) : undefined} + + ) +} + +export default Table diff --git a/webpack.config.js b/webpack.config.js index f4820734..9c9b091b 100755 --- a/webpack.config.js +++ b/webpack.config.js @@ -1,67 +1,92 @@ -var debug = process.env.NODE_ENV !== 'production'; -var webpack = require('webpack'); +require('@babel/register') +const path = require('path') + +const { CleanWebpackPlugin } = require('clean-webpack-plugin') +const CopyPlugin = require('copy-webpack-plugin') +const HtmlWebpackPlugin = require('html-webpack-plugin') +const webpack = require('webpack') + +const outputDirectory = 'public' module.exports = { - target: 'web', - devtool: 'nosources-source-map', - node : { - fs : 'empty', - net : 'empty', - tls : 'empty' - }, - entry: { - study: './views/Study.render.react.js', - admin: './views/Admin.render.react.js', - main: './views/Main.render.react.js', - login: './views/Login.render.react.js', - register: './views/Register.render.react.js', - reset: './views/Resetpw.render.react.js', - account: './views/Account.render.react.js', - editConfig: './views/EditConfig.render.react.js', - config: './views/Config.render.react.js', - deepdive: './views/DeepDive.render.react.js', - graph: './views/Graph.render.react.js' - }, - module: { - rules: [ - { - test: /\.js?$/, - exclude: /node_modules/, - use: [{ - loader: 'babel-loader', - query: { - plugins: [ - 'react-html-attrs', - '@babel/plugin-proposal-class-properties', - ['@babel/plugin-proposal-decorators', { legacy: true }], - ['@babel/plugin-transform-runtime', { legacy: true }] - ], - presets: [ - '@babel/preset-react', - '@babel/preset-env', - ] - } - }], - } - ], - }, - output: { - path: __dirname + '/public/js/', - filename: '[name].min.js', - publicPath: '/js/' - }, - resolve: { - extensions: ['.js'] - }, - plugins: [ - new webpack.DefinePlugin({ - 'process.env':{ - 'NODE_ENV': JSON.stringify('production'), - } - }), - new webpack.NoEmitOnErrorsPlugin(), - new webpack.ProvidePlugin({ - Promise: 'imports-loader?this=>global!exports-loader?global.Promise!es6-promise' - }) - ], -}; + target: 'web', + mode: process.env.NODE_ENV || 'production', + entry: './views/index.js', + watchOptions: { + ignored: ['**/node_modules', '**/server'], + }, + module: { + rules: [ + { + test: /\.(js|jsx)$/, + exclude: [/node_modules/, /\.test\.(js|jsx)$/], + use: [ + { + loader: 'babel-loader', + options: { + plugins: [ + 'react-html-attrs', + '@babel/plugin-proposal-class-properties', + ['@babel/plugin-proposal-decorators', { legacy: true }], + ['@babel/plugin-transform-runtime', { legacy: true }], + ], + presets: [ + [ + '@babel/preset-react', + { + runtime: 'automatic', + }, + ], + '@babel/preset-env', + ], + cacheDirectory: true, + }, + }, + ], + }, + { + test: /\.(png|svg|jpg|jpeg|gif)$/i, + type: 'asset/resource', + generator: { + filename: 'static/[hash][ext][query]', + }, + }, + { + test: /\.css$/i, + use: ['style-loader', 'css-loader'], + }, + ], + }, + optimization: { + minimize: process.env.NODE_ENV === 'production', + }, + output: { + path: path.join(__dirname, outputDirectory), + filename: 'js/bundle.js', + publicPath: '/', + }, + resolve: { + fallback: { + fs: false, + net: false, + tls: false, + }, + extensions: ['*', '.js', '.jsx'], + }, + devtool: 'source-map', + plugins: [ + new webpack.DefinePlugin({ + 'process.env': { + NODE_ENV: JSON.stringify(process.env.NODE_ENV), + DPDASH_VERSION: JSON.stringify(process.env.npm_package_version), + }, + }), + new CleanWebpackPlugin(), + new CopyPlugin({ + patterns: [{ from: 'assets', to: 'img' }], + }), + new HtmlWebpackPlugin({ + template: './template/template.html', + }), + ], +}