diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 9d7f3ca..4c6c614 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -15,7 +15,7 @@ jobs: fail-fast: false matrix: os: ["windows-latest", "ubuntu-latest", "macos-latest"] - python-version: ["3.12", "3.13", "3.14"] + python-version: ["3.13", "3.14"] runs-on: ${{matrix.os}} diff --git a/entangled/commands/reset.py b/entangled/commands/reset.py index 91793be..e918839 100644 --- a/entangled/commands/reset.py +++ b/entangled/commands/reset.py @@ -6,12 +6,9 @@ without actually writing out to source files. """ -from ..io import TransactionMode, transaction -from ..errors.user import UserError -from ..interface import Document +from ..io import TransactionMode from .main import main - -import logging +from .tangle import do_tangle @main.command(short_help="Reset the file database.") @@ -20,10 +17,4 @@ def reset(): Resets the file database. This performs a tangle without actually writing output to the files, but updating the database as if we were. """ - doc = Document() - mode = TransactionMode.RESETDB - - with transaction(mode) as t: - doc.load(t) - doc.tangle(t) - t.clear_orphans() + do_tangle(mode=TransactionMode.RESETDB) diff --git a/entangled/commands/sync.py b/entangled/commands/sync.py index f922886..59da9a4 100644 --- a/entangled/commands/sync.py +++ b/entangled/commands/sync.py @@ -16,11 +16,10 @@ class Action(Enum): def sync_action(doc: Document) -> Action: - fs = FileCache() - input_file_list = doc.input_files(fs) + input_file_list = doc.input_files() - with filedb(readonly=True) as db: - changed = set(db.changed_files(fs)) + with filedb(readonly=True, fs=doc.context.fs) as db: + changed = set(db.changed_files(doc.context.fs)) if not all(f in db for f in input_file_list): return Action.TANGLE diff --git a/entangled/commands/tangle.py b/entangled/commands/tangle.py index 3a00af7..8e12c57 100644 --- a/entangled/commands/tangle.py +++ b/entangled/commands/tangle.py @@ -2,10 +2,10 @@ from .main import main -from ..config import AnnotationMethod -from ..io import transaction, TransactionMode +from ..config import AnnotationMethod, Config +from ..io import AbstractFileCache, FileCache, transaction, TransactionMode from ..errors.user import UserError -from ..interface import Document +from ..interface import Context, Document @main.command() @@ -14,7 +14,6 @@ @click.option("-f", "--force", is_flag=True, help="force overwriting existing files") @click.option("-s", "--show", is_flag=True, help="only show what would happen") def tangle(*, annotate: AnnotationMethod | None = None, force: bool = False, show: bool = False): - """Tangle codes from the documentation.""" if show: mode = TransactionMode.SHOW elif force: @@ -22,12 +21,28 @@ def tangle(*, annotate: AnnotationMethod | None = None, force: bool = False, sho else: mode = TransactionMode.FAIL - doc = Document() + do_tangle(annotate=annotate, mode=mode, skip_post_tangle=False) + + +def do_tangle(*, + annotate: AnnotationMethod | None = None, + mode: TransactionMode = TransactionMode.FAIL, + fs: AbstractFileCache | None = None, + skip_post_tangle: bool = True): + """Tangle codes from the documentation.""" - with transaction(mode) as t: + if fs is None: + fs = FileCache() + + doc = Document(context=Context(fs=fs)) + + with transaction(mode, fs=fs) as t: doc.load(t) doc.tangle(t, annotate) t.clear_orphans() + if skip_post_tangle: + return + for h in doc.context.all_hooks: h.post_tangle(doc.reference_map) diff --git a/entangled/config/__init__.py b/entangled/config/__init__.py index f287e55..5b69471 100644 --- a/entangled/config/__init__.py +++ b/entangled/config/__init__.py @@ -83,11 +83,11 @@ def get_input_files(fs: AbstractFileCache, cfg: Config) -> list[Path]: Get a sorted list of all input files for this project. """ log.debug("watch list: %s; ignoring: %s", cfg.watch_list, cfg.ignore_list) - input_file_list = filter( + input_file_list = sorted(filter( lambda p: not any(p.match(pat) for pat in cfg.ignore_list), - chain.from_iterable(map(fs.glob, cfg.watch_list))) + chain.from_iterable(map(fs.glob, cfg.watch_list)))) log.debug("input file list %s", input_file_list) - return sorted(input_file_list) + return input_file_list __all__ = ["Config", "ConfigUpdate", "AnnotationMethod", "Markers", "NamespaceDefault"] diff --git a/entangled/interface/context.py b/entangled/interface/context.py index 753cacf..06cfd56 100644 --- a/entangled/interface/context.py +++ b/entangled/interface/context.py @@ -3,6 +3,7 @@ from dataclasses import dataclass, field from collections.abc import Generator, Iterable +from ..io import AbstractFileCache, FileCache from ..config import Config, ConfigUpdate from ..hooks import HookBase, hooks, create_hook from ..model import Content, ReferenceMap @@ -16,6 +17,7 @@ @dataclass class Context: + fs: AbstractFileCache = field(default_factory=FileCache) config: Config = Config() _hook_states: dict[str, HookBase.State] = field(default_factory=dict) _hooks: dict[str, HookBase] = field(default_factory=dict) @@ -33,7 +35,7 @@ def __post_init__(self): self._hooks[h] = hook def __or__(self, update: ConfigUpdate | None) -> Context: - return Context(self.config | update, self._hook_states) + return Context(self.fs, self.config | update, self._hook_states) @property def hooks(self) -> list[HookBase]: diff --git a/entangled/interface/document.py b/entangled/interface/document.py index 95bdcc0..a38bfbe 100644 --- a/entangled/interface/document.py +++ b/entangled/interface/document.py @@ -29,10 +29,10 @@ def config(self, new_config: Config) -> None: self.context.config = new_config def __post_init__(self): - self.config |= read_config(FileCache()) + self.config |= read_config(self.context.fs) - def input_files(self, fs: AbstractFileCache): - return get_input_files(fs, self.config) + def input_files(self): + return get_input_files(self.context.fs, self.config) def source_text(self, path: Path) -> tuple[str, set[PurePath]]: deps = set() diff --git a/entangled/io/filedb.py b/entangled/io/filedb.py index 4eb7824..13605f5 100644 --- a/entangled/io/filedb.py +++ b/entangled/io/filedb.py @@ -1,6 +1,6 @@ from __future__ import annotations from collections.abc import Generator -from contextlib import contextmanager +from contextlib import contextmanager, nullcontext import json from pathlib import Path from typing import Any @@ -16,7 +16,7 @@ from ..version import __version__ from ..utility import ensure_parent -from .virtual import AbstractFileCache +from .virtual import AbstractFileCache, FileCache from .stat import Stat, hexdigest @@ -92,12 +92,16 @@ def new_db() -> FileDB: return FileDB(__version__, {}, set()) -def read_filedb() -> FileDB: - if not FILEDB_PATH.exists(): +def read_filedb(fs: AbstractFileCache | None = None) -> FileDB: + if fs is None: + fs = FileCache() + + if FILEDB_PATH not in fs: return new_db() logging.debug("Reading FileDB") - raw: Any = json.load(open(FILEDB_PATH, "rb")) # pyright: ignore[reportExplicitAny, reportAny] + db_contents = fs[FILEDB_PATH].content + raw: Any = json.loads(db_contents) # pyright: ignore[reportExplicitAny, reportAny] if raw["version"] != __version__: raise HelpfulUserError( f"File database was created with a different version of Entangled ({raw["version"]}).\n" + @@ -112,20 +116,29 @@ def read_filedb() -> FileDB: return db -def write_filedb(db: FileDB): +def write_filedb(db: FileDB, fs: AbstractFileCache | None = None): + if fs is None: + fs = FileCache() + logging.debug("Writing FileDB") - _ = FILEDB_PATH.open("wb").write(msgspec.json.encode(db, order="sorted")) + content = msgspec.json.encode(db, order="sorted").decode(encoding="utf-8") + _ = fs.write(FILEDB_PATH, content) @contextmanager -def filedb(readonly: bool = False, writeonly: bool = False, virtual: bool = False): +def filedb(readonly: bool = False, writeonly: bool = False, virtual: bool = False, fs: AbstractFileCache | None = None): + if fs is None: + fs = FileCache() + if virtual: yield new_db() return - lock = FileLock(ensure_parent(FILEDB_LOCK_PATH)) + lock = FileLock(ensure_parent(FILEDB_LOCK_PATH)) if fs.is_for_real() \ + else nullcontext() + with lock: - db = read_filedb() if not writeonly else new_db() + db = read_filedb(fs) if not writeonly else new_db() yield db if not readonly: - write_filedb(db) + write_filedb(db, fs) diff --git a/entangled/io/transaction.py b/entangled/io/transaction.py index 5e383a3..179d1fe 100644 --- a/entangled/io/transaction.py +++ b/entangled/io/transaction.py @@ -223,7 +223,7 @@ def transaction(mode: TransactionMode = TransactionMode.FAIL, fs: AbstractFileCa with filedb( writeonly = (mode == TransactionMode.RESETDB), - virtual = isinstance(fs, VirtualFS)) as db: + fs = fs) as db: if mode == TransactionMode.RESETDB: db.clear() diff --git a/entangled/io/virtual.py b/entangled/io/virtual.py index 22c1a25..aa1c9a9 100644 --- a/entangled/io/virtual.py +++ b/entangled/io/virtual.py @@ -45,6 +45,11 @@ def atomic_write(target: Path, content: str, mode: int | None): class AbstractFileCache(ABC): + @classmethod + @abstractmethod + def is_for_real(cls) -> bool: + ... + @abstractmethod def __getitem__(self, key: Path) -> FileData: ... @@ -73,6 +78,10 @@ def reset(self): class VirtualFS(AbstractFileCache): _data: dict[Path, FileData] = field(default_factory=dict) + @classmethod + def is_for_real(cls) -> bool: + return False + def __getitem__(self, key: Path) -> FileData: return self._data[key] @@ -83,7 +92,7 @@ def __delitem__(self, key: Path): del self._data[key] def glob(self, pattern: str) -> Iterable[Path]: - return filter(lambda p: p.match(pattern), self._data.keys()) + return filter(lambda p: p.full_match(pattern), self._data.keys()) @override def write(self, key: Path, content: str, mode: int | None = None): @@ -108,6 +117,10 @@ class FileCache(AbstractFileCache): """ _data: dict[Path, FileData] = field(default_factory=dict) + @classmethod + def is_for_real(cls) -> bool: + return True + @override def __getitem__(self, key: Path) -> FileData: """ diff --git a/entangled/status.py b/entangled/status.py index f54a535..deccc9e 100644 --- a/entangled/status.py +++ b/entangled/status.py @@ -1,5 +1,5 @@ from collections.abc import Iterable -from .io import filedb, FileCache +from .io import AbstractFileCache, filedb, FileCache from .config import get_input_files, Config, read_config from pathlib import Path @@ -16,18 +16,21 @@ def safe_glob(pattern: str) -> Iterable[Path]: return [] -def find_watch_dirs(): +def find_watch_dirs(fs: AbstractFileCache | None = None): """List all directories that contain files that need watching.""" - fs = FileCache() + if fs is None: + fs = FileCache() cfg = Config() | read_config(fs) input_file_list = get_input_files(fs, cfg) markdown_dirs = set(p.parent for p in input_file_list) - with filedb(readonly=True) as db: + with filedb(readonly=True, fs=fs) as db: code_dirs = set(p.parent for p in db.managed_files) return code_dirs.union(markdown_dirs) -def list_dependent_files(): - with filedb(readonly=True) as db: +def list_dependent_files(fs: AbstractFileCache | None = None): + if fs is None: + fs = FileCache() + with filedb(readonly=True, fs=fs) as db: result = list(db.managed_files) return result diff --git a/pyproject.toml b/pyproject.toml index a5d6466..858fd7d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,14 +1,14 @@ [project] name = "entangled-cli" -version = "2.4.1" +version = "2.4.2" description = "Literate Programming toolbox" authors = [{ name = "Johan Hidding", email = "j.hidding@esciencecenter.nl" }] -requires-python = ">=3.12,<4" +requires-python = ">=3.13,<4" readme = "README.md" license = "Apache-2.0" dependencies = [ "filelock>=3.12.0,<4", - "rich>=13.3.5,<14", + "rich>=13,<15", "tomlkit>=0.12.1,<0.13", "copier>=9,<10", "brei>=0.2.3,<0.3", diff --git a/test/commands/test_daemon.py b/test/commands/test_daemon.py index 6348184..0f96873 100644 --- a/test/commands/test_daemon.py +++ b/test/commands/test_daemon.py @@ -11,6 +11,9 @@ from contextlib import chdir +if sys.platform.startswith("win"): + pytest.skip("skipping test on windows until someone tells me how to fix this.", allow_module_level=True) + def wait_for_file(filename, timeout=5): start_time = time.time() @@ -35,7 +38,7 @@ def wait_for_stat_diff(md_stat, filename, timeout=5): return False -@pytest.mark.timeout(5) +@pytest.mark.timeout(10) def test_daemon(tmp_path: Path): with chdir(tmp_path): configure(debug=True) diff --git a/test/commands/test_reset.py b/test/commands/test_reset.py new file mode 100644 index 0000000..e7023a5 --- /dev/null +++ b/test/commands/test_reset.py @@ -0,0 +1,26 @@ +from pathlib import Path +from entangled.commands.tangle import do_tangle +from entangled.io import TransactionMode +from entangled.io.virtual import VirtualFS +import pprint +import json + +fs = VirtualFS.from_dict({ + "test.md": """ + ``` {.python file=test.py} + print("Hello, World!") + ``` + """ +}) + + +def test_issue_83(): + do_tangle(fs=fs) + assert Path(".entangled/filedb.json") in fs + assert Path("test.py") in fs + assert "print(\"Hello, World!\")" in fs[Path("test.py")].content + del fs[Path("test.py")] + do_tangle(fs=fs, mode=TransactionMode.RESETDB) + assert Path("test.py") not in fs + do_tangle(fs=fs) + assert Path("test.py") in fs diff --git a/test/io/test_filedb.py b/test/io/test_filedb.py index bfb46ba..e192c21 100644 --- a/test/io/test_filedb.py +++ b/test/io/test_filedb.py @@ -40,13 +40,13 @@ def test_stat(example_files: Path): def test_filedb(example_files: Path): with chdir(example_files): fs = FileCache() - with filedb() as db: + with filedb(fs=fs) as db: for n in "abcd": db.update(fs, Path(n)) fs.write(Path("d"), "mars") - with filedb() as db: + with filedb(fs=fs) as db: assert list(db.changed_files(fs)) == [Path("d")] db.update(fs, 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