From 7066ae0b2dd47b618c8bc49edb2fab53f4537566 Mon Sep 17 00:00:00 2001 From: Jasmin Hafner Date: Tue, 4 Mar 2025 15:31:32 +0100 Subject: [PATCH] MNT: updating links to sludge package --- docs/source/tutorials/accessing_packages.ipynb | 2 +- .../tutorials/download_additional_information_data.ipynb | 2 +- docs/source/tutorials/download_pathway_SBML.ipynb | 8 ++++---- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/docs/source/tutorials/accessing_packages.ipynb b/docs/source/tutorials/accessing_packages.ipynb index e1059d5..299b8aa 100644 --- a/docs/source/tutorials/accessing_packages.ipynb +++ b/docs/source/tutorials/accessing_packages.ipynb @@ -1075,7 +1075,7 @@ "# Get all reviewed packages\n", "reviewed_packages = [\n", " Package(eP.requester, id=EAWAG_BBD_URL),\n", - " Package(eP.requester, id=\"https://envipath.org/package/7932e576-03c7-4106-819d-fe80dc605b8a\"), # EAWAG-SLUDGE\n", + " Package(eP.requester, id=\"https://envipath.org/package/521c547a-fd2a-491c-ad5b-7eaa1577fb65\"), # EAWAG-SLUDGE\n", " Package(eP.requester, id=\"https://envipath.org/package/5882df9c-dae1-4d80-a40e-db4724271456\") # EAWAG-SOIL\n", "]\n", "\n", diff --git a/docs/source/tutorials/download_additional_information_data.ipynb b/docs/source/tutorials/download_additional_information_data.ipynb index 8624890..da0ce60 100644 --- a/docs/source/tutorials/download_additional_information_data.ipynb +++ b/docs/source/tutorials/download_additional_information_data.ipynb @@ -49,7 +49,7 @@ "outputs": [], "source": [ "INSTANCE_HOST = \"https://envipath.org/\"\n", - "EAWAG_SLUDGE_DATA_PACKAGE = \"https://envipath.org/package/7932e576-03c7-4106-819d-fe80dc605b8a\"\n", + "EAWAG_SLUDGE_DATA_PACKAGE = \"https://envipath.org/package/521c547a-fd2a-491c-ad5b-7eaa1577fb65\"\n", "\n", "eP = enviPath(INSTANCE_HOST)\n", "pkg = Package(eP.requester, id=EAWAG_SLUDGE_DATA_PACKAGE)" diff --git a/docs/source/tutorials/download_pathway_SBML.ipynb b/docs/source/tutorials/download_pathway_SBML.ipynb index fe1378a..90519d7 100644 --- a/docs/source/tutorials/download_pathway_SBML.ipynb +++ b/docs/source/tutorials/download_pathway_SBML.ipynb @@ -13,7 +13,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "In this tutorial we will show how can to export an enviPath Pathway to SBML in a few lines of code. The pathway that we will download is the [Deprenyl](https://envipath.org/package/7932e576-03c7-4106-819d-fe80dc605b8a/pathway/b21b1d65-e0d1-4060-b890-45bf3713924a) pathway from EAWAG-SLUDGE.\n", + "In this tutorial we will show how can to export an enviPath Pathway to SBML in a few lines of code. The pathway that we will download is the [Deprenyl](https://envipath.org/package/521c547a-fd2a-491c-ad5b-7eaa1577fb65/pathway/c9434148-85ea-4f30-b8aa-afe790923cf3) pathway from EAWAG-SLUDGE.\n", "\n", "For this tutorial we will import [libsbml](https://synonym.caltech.edu/software/libsbml/5.18.0/docs/formatted/python-api/), a Python API that facilitates the generation of SBML documents from various data formats.\n", "\n", @@ -33,8 +33,8 @@ "name": "stdout", "output_type": "stream", "text": [ - "\u001b[33mWARNING: Skipping enviPath_python as it is not installed.\u001b[0m\u001b[33m\n", - "\u001b[0m" + "\u001B[33mWARNING: Skipping enviPath_python as it is not installed.\u001B[0m\u001B[33m\n", + "\u001B[0m" ] } ], @@ -46,7 +46,7 @@ "\n", "HOST_INSTANCE = \"https://envipath.org/\"\n", "eP = enviPath(HOST_INSTANCE)\n", - "pwid = HOST_INSTANCE + 'package/7932e576-03c7-4106-819d-fe80dc605b8a/pathway/b21b1d65-e0d1-4060-b890-45bf3713924a' # Deprenyl sludge\n", + "pwid = HOST_INSTANCE + 'package/521c547a-fd2a-491c-ad5b-7eaa1577fb65/pathway/c9434148-85ea-4f30-b8aa-afe790923cf3' # Deprenyl sludge\n", "package = 'SLUDGE'\n", "pathway = Pathway(eP.requester, id=pwid)" ]