New version

Author: hexylena

README.rst

@@ -85,6 +85,10 @@ Or with the Arrow client:
 History
 -------
 
+- 4.3.0
+    - Biopython requires are now more strict, there is a maximum that bcbio_gff supports
+    - loading GFF3 now has a new flag, --cds_cleaning, to enable more apollo conformant behaviour for multi-exon transcripts
+      (https://github.com/galaxy-genome-annotation/python-apollo/issues/60, https://github.com/galaxy-genome-annotation/python-apollo/pull/62)
 - 4.2.13
     - Relax biopython requirements
 - 4.2.12

apollo/annotations/__init__.py

@@ -1333,7 +1333,7 @@ def load_gff3(self, organism, gff3, source=None, batch_size=1,
         :param cds_cleaning: This changes the behaviour of creating GFF3
                              features in apollo to match more closely to what it expects. Generally
                              you'll probably want this on if you have transcripts with multiple
-                             exons and CDSs, but we don't want to change existing scripts 
+                             exons and CDSs, but we don't want to change existing scripts
                              so we are not defaulting this on.
 
         :type timing: bool

arrow/__init__.py

@@ -1 +1 @@
-__version__ = '4.2.13'
+__version__ = '4.3.0'

setup.py

@@ -16,11 +16,11 @@
 
 setup(
     name="apollo",
-    version='4.2.13',
+    version='4.3.0',
     description="Apollo API library",
     long_description=readme,
     author="Helena Rasche;Anthony Bretaudeau;Nathan Dunn",
-    author_email="hxr@hx42.org",
+    author_email="hexylena@galaxians.org",
     url='https://github.com/galaxy-genome-annotation/python-apollo',
     packages=['apollo', 'arrow'] + subpackages,
     entry_points='''