Using the following input file, we expect only three patches to be sampled, and this should be reflected in the genotype file. This is not the case.
generations 20
patch_capacity 20
patch_number 10
coalescence 1
ntrl_loci 2
sampled_patches {5 7 9}
ntrl_save_genotype 1
Notice that if we change coalescence from 1 to 0, we have the expected behaviour. It's a bit problematic because changing the sampling scheme is actually more useful in the coalescence mode.