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Don't crash if no QTLs on selected chromosome #6

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Don't crash if no QTLs on selected chromosome #6

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5 changes: 5 additions & 0 deletions eigenMT.py
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Original file line number Diff line number Diff line change
Expand Up @@ -192,6 +192,11 @@ def bf_eigen_windows(test_dict, gen_dict, phepos_dict, OUT_fh, input_header, var
OUT = open(OUT_fh, 'w')
OUT.write(input_header + '\tBF\tTESTS\n')

if len(test_dict) == 0:
print >>sys.stderr, 'No QTLs on the selected chromosome.'
sys.stderr.flush()
return

counter = 1.0
genes = test_dict.keys()
numgenes = len(genes)
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