diff --git a/README.md b/README.md index 4f000cf..c65a02d 100644 --- a/README.md +++ b/README.md @@ -9,6 +9,7 @@ by KBase apps to fetch data from the database. * **Schemas** are [JSON schemas](https://json-schema.org/) that define what form of data can be stored in the database's collections. * **Migrations** are python modules that connect to the database and are responsible for transitioning the data in a collection from an old schema to a newer one. +* **Data sources** (in `data_sources/`) contains some general information about where some of our imported data comes from. ## Development diff --git a/data_sources/envo_ontology.yaml b/data_sources/envo_ontology.yaml new file mode 100644 index 0000000..0b138c3 --- /dev/null +++ b/data_sources/envo_ontology.yaml @@ -0,0 +1,6 @@ +name: envo_ontology +category: ontology +title: Environment Ontology +home_url: http://www.obofoundry.org/ontology/envo.html +data_url: https://github.com/EnvironmentOntology/envo/releases +logo_path: /images/third-party-data-sources/envo/logo-119-64.png diff --git a/data_sources/go_ontology.yaml b/data_sources/go_ontology.yaml new file mode 100644 index 0000000..21cbfad --- /dev/null +++ b/data_sources/go_ontology.yaml @@ -0,0 +1,6 @@ +name: go_ontology +category: ontology +title: Gene Ontology +home_url: http://geneontology.org/ +data_url: http://release.geneontology.org/ +logo_path: /images/third-party-data-sources/go/logo-248-64.png diff --git a/data_sources/gtdb_taxonomy.yaml b/data_sources/gtdb_taxonomy.yaml new file mode 100644 index 0000000..8dd8e5a --- /dev/null +++ b/data_sources/gtdb_taxonomy.yaml @@ -0,0 +1,6 @@ +name: gtdb_taxonomy +category: taxonomy +title: GTDB Taxonomy +home_url: https://gtdb.ecogenomic.org +data_url: https://data.ace.uq.edu.au/public/gtdb/data/releases/ +logo_path: /images/third-party-data-sources/gtdb/logo-128-64.png diff --git a/data_sources/ncbi_taxonomy.yaml b/data_sources/ncbi_taxonomy.yaml new file mode 100644 index 0000000..37a8819 --- /dev/null +++ b/data_sources/ncbi_taxonomy.yaml @@ -0,0 +1,6 @@ +name: ncbi_taxonomy +category: taxonomy +title: NCBI Taxonomy +home_url: https://www.ncbi.nlm.nih.gov/taxonomy +data_url: ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ +logo_path: /images/third-party-data-sources/ncbi/logo-51-64.png diff --git a/data_sources/rdp_taxonomy.yaml b/data_sources/rdp_taxonomy.yaml new file mode 100644 index 0000000..ffef460 --- /dev/null +++ b/data_sources/rdp_taxonomy.yaml @@ -0,0 +1,6 @@ +name: rdp_taxonomy +category: taxonomy +title: Ribosomal Database Project +home_url: http://rdp.cme.msu.edu/taxomatic/main.spr +data_url: http://rdp.cme.msu.edu/misc/resources.jsp +logo_url: /images/third-party-data-sources/ncbi/logo-51-64.png