Absolute path used in Rules

[SichongP]

Line 21 of functional-annotation/Rules/ChIPMetrics.smk

Rscript /home/ckern/phantompeakqualtools/run_spp.R

Uses absolute path. I can't find run_spp.R script in Scripts directory either.

[kernco]

Until I get this fixed, you can download the script here: https://github.com/kundajelab/phantompeakqualtools and then change that path to your own.