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hello,
i installed the nextflow following offline instruction and then i tried to run it and i got this error:
nextflow run ~/my-pipelines/nf-core/lncpipe-master
N E X T F L O W ~ version 21.10.6
Launching /home/najib/my-pipelines/nf-core/lncpipe-master/LncRNAanalysisPipe.nf [nauseous_easley] - revision: 7b819c09be
Script compilation error
- file : /home/najib/my-pipelines/nf-core/lncpipe-master/LncRNAanalysisPipe.nf
- cause: Identifier
Run_fastQCis already used by another definition @ line 849, column 17.
process Run_fastQC {
^
Script compilation error
- file : /home/najib/my-pipelines/nf-core/lncpipe-master/LncRNAanalysisPipe.nf
- cause: Identifier
Run_afterQCis already used by another definition @ line 875, column 17.
process Run_afterQC {
^
Script compilation error
- file : /home/najib/my-pipelines/nf-core/lncpipe-master/LncRNAanalysisPipe.nf
- cause: Identifier
Run_FastPis already used by another definition @ line 909, column 17.
process Run_FastP {
^
Script compilation error
- file : /home/najib/my-pipelines/nf-core/lncpipe-master/LncRNAanalysisPipe.nf
- cause: Identifier
Build_kallisto_index_of_GTF_for_quantificationis already used by another definition @ line 1443, column 17.
process Build_kallisto_index_of_GTF_for_quantification {
^
Script compilation error
- file : /home/najib/my-pipelines/nf-core/lncpipe-master/LncRNAanalysisPipe.nf
- cause: Identifier
Run_kallisto_for_quantificationis already used by another definition @ line 1460, column 17.
process Run_kallisto_for_quantification {
^
Script compilation error
- file : /home/najib/my-pipelines/nf-core/lncpipe-master/LncRNAanalysisPipe.nf
- cause: Identifier
Run_LncPipeReporteris already used by another definition @ line 1582, column 17.
process Run_LncPipeReporter {
^
Script compilation error
- file : /home/najib/my-pipelines/nf-core/lncpipe-master/LncRNAanalysisPipe.nf
- cause: Identifier
Run_LncPipeReporter_without_Designis already used by another definition @ line 1628, column 17.
process Run_LncPipeReporter_without_Design {
^
7 errors
what will be the problem and how is it possible to solve it?
thank you for your time.
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