From b9b3db9499bfd74b97577d3d702feda7f7f937ce Mon Sep 17 00:00:00 2001
From: Usman Rashid <usman@smme.edu.pk>
Date: Thu, 24 Jul 2025 12:25:19 +1200
Subject: [PATCH 1/2] Added Dockerfile and container workflow

---
 .github/workflows/release.yml | 50 +++++++++++++++++++++++++++++++++++
 Dockerfile                    | 23 ++++++++++++++++
 2 files changed, 73 insertions(+)
 create mode 100644 .github/workflows/release.yml
 create mode 100644 Dockerfile

diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
new file mode 100644
index 0000000..25bfe68
--- /dev/null
+++ b/.github/workflows/release.yml
@@ -0,0 +1,50 @@
+#
+name: Create and publish a Docker image
+
+on:
+  release:
+    types: [published, prereleased]
+  push:
+    branches:
+      - main
+      - master
+
+env:
+  REGISTRY: ghcr.io
+  IMAGE_NAME: ${{ github.repository }}
+
+jobs:
+  build-and-push-image:
+    runs-on: ubuntu-latest
+
+    permissions:
+      contents: read
+      packages: write
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4.2.2
+
+      - name: Log in to the Container registry
+        uses: docker/login-action@v3.4.0
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Extract metadata (tags, labels) for Docker
+        id: meta
+        uses: docker/metadata-action@v5.7.0
+        with:
+          images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
+          tags: |
+            type=ref,event=tag
+            type=sha
+
+      - name: Build and push Docker image
+        uses: docker/build-push-action@v6.18.0
+        with:
+          context: .
+          push: true
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}
diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000..c40512e
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,23 @@
+FROM debian:stable AS builder
+
+RUN apt-get update && apt-get install -y \
+    git \
+    build-essential \
+    zlib1g-dev \
+    libbz2-dev \
+    liblzma-dev \
+    libcurl4-openssl-dev \
+    ca-certificates \
+    libomp-dev
+
+COPY . /usr/src
+WORKDIR /usr/src
+RUN make -j8
+
+FROM debian:stable-slim
+
+RUN apt-get update && apt-get install -y \
+    procps \
+    libgomp1
+
+COPY --from=builder /usr/src/bin/* /usr/local/bin/

From bb3c814e2b0f4694cf5e335447a0feb5a7a394d7 Mon Sep 17 00:00:00 2001
From: Usman Rashid <usman@smme.edu.pk>
Date: Fri, 25 Jul 2025 14:24:40 +1200
Subject: [PATCH 2/2] Added samtools to the final container

---
 Dockerfile | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index c40512e..04fd209 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -18,6 +18,7 @@ FROM debian:stable-slim
 
 RUN apt-get update && apt-get install -y \
     procps \
-    libgomp1
+    libgomp1 \
+    samtools
 
 COPY --from=builder /usr/src/bin/* /usr/local/bin/