diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md index 94b4532..674236c 100644 --- a/.github/pull_request_template.md +++ b/.github/pull_request_template.md @@ -7,14 +7,15 @@ Please include a summary of the changes and the related issue/task. Please also Please include the Jira Ticket Number and Link for this issue/task. ## Checklist before requesting a review + - [ ] I have performed a self-review of my code - [ ] Ensure the target / base branch for any feature PR is set to `dev` not main (the only exception to this is releases from `dev` and hotfix branches) ## Checklist for conducting a review -- [ ] Review the code changes and make sure they all make sense and are necessary. -- [ ] Pull the PR branch locally and test by running through workflow and making sure everything works as it is supposed to. -## Workflow +- [ ] Review the code changes and make sure they all make sense and are necessary. +- [ ] Pull the PR branch locally and test by running through workflow and making sure everything works as it is supposed to. -Owner of the Pull Request will be responsible for merge after all requirements are met, including approval from at least one reviewer. Additional changes made after a review will dismiss any approvals and require re-review of the additional updates. Auto merging can be enabled below if additional changes are likely not to be needed. The bot will auto assign reviewers to your Pull Request for you. +## Workflow +Owner of the Pull Request will be responsible for merge after all requirements are met, including approval from at least one reviewer. Additional changes made after a review will dismiss any approvals and require re-review of the additional updates. Auto merging can be enabled below if additional changes are likely not to be needed. The bot will auto assign reviewers to your Pull Request for you. diff --git a/.github/workflows/ci-workflow.yml b/.github/workflows/ci-workflow.yml index daefede..cf34917 100644 --- a/.github/workflows/ci-workflow.yml +++ b/.github/workflows/ci-workflow.yml @@ -4,39 +4,41 @@ on: [push, pull_request] jobs: lint_frontend: - defaults: + defaults: run: working-directory: frontend - name: Check tsc, lint, and prettier on front end + name: Check tsc, lint, and prettier on front end runs-on: ubuntu-latest steps: - - uses: actions/checkout@v1 - - uses: actions/setup-node@v1 - with: - node-version: '21.x' - - run: npm install - - run: npm run lint - - run: npm run prettier - env: - CI: true - lint_backend: - defaults: + - uses: actions/checkout@v4 + with: + clean: true + - uses: actions/setup-node@v1 + with: + node-version: "21.x" + - run: npm install + - run: npm run lint + - run: npm run prettier + env: + CI: true + lint_backend: + defaults: run: - working-directory: backend - name: Check tsc, lint, and prettier on back end + working-directory: backend + name: Check tsc, lint, and prettier on back end runs-on: ubuntu-latest steps: - - uses: actions/checkout@v1 - - uses: actions/setup-node@v1 - with: - node-version: '21.x' - - run: npm install - - run: npm run lint - - run: npm run prettier - env: - CI: true + - uses: actions/checkout@v1 + - uses: actions/setup-node@v1 + with: + node-version: "21.x" + - run: npm install + - run: npm run lint + - run: npm run prettier + env: + CI: true test_frontend: - defaults: + defaults: run: working-directory: frontend name: Test on node ${{ matrix.node-version }} and ${{ matrix.os }} on backend @@ -47,21 +49,21 @@ jobs: node-version: [21] steps: - - uses: actions/checkout@v1 - - name: Use Node.js ${{ matrix.node-version }} - uses: actions/setup-node@v1 - with: - node-version: ${{ matrix.node-version }} - - run: npm install - - run: npm test - env: - CI: true + - uses: actions/checkout@v1 + - name: Use Node.js ${{ matrix.node-version }} + uses: actions/setup-node@v1 + with: + node-version: ${{ matrix.node-version }} + - run: npm install + - run: npm test + env: + CI: true test_backend: - defaults: + defaults: run: working-directory: backend - name: Test on node ${{ matrix.node-version }} and ${{ matrix.os }} on backend + name: Test on node ${{ matrix.node-version }} and ${{ matrix.os }} on backend runs-on: ${{ matrix.os }} strategy: matrix: @@ -69,12 +71,12 @@ jobs: node-version: [21] steps: - - uses: actions/checkout@v1 - - name: Use Node.js ${{ matrix.node-version }} - uses: actions/setup-node@v1 - with: - node-version: ${{ matrix.node-version }} - - run: npm install - - run: npm test - env: - CI: true + - uses: actions/checkout@v1 + - name: Use Node.js ${{ matrix.node-version }} + uses: actions/setup-node@v1 + with: + node-version: ${{ matrix.node-version }} + - run: npm install + - run: npm test + env: + CI: true diff --git a/.github/workflows/docker-cd-dev.yml b/.github/workflows/docker-cd-dev.yml index c87651d..ec8a582 100644 --- a/.github/workflows/docker-cd-dev.yml +++ b/.github/workflows/docker-cd-dev.yml @@ -2,40 +2,40 @@ name: Docker Development Image CD on: push: - branches: [ dev ] + branches: [dev] workflow_dispatch: jobs: - docker-cd: + docker-cd: runs-on: ubuntu-latest steps: + - name: Checkout Repository + uses: actions/checkout@v3 + with: + submodules: true + clean: true - - name: Checkout Repository - uses: actions/checkout@v3 - with: - submodules: true + - name: Setup Docker Buildx + uses: docker/setup-buildx-action@v2 - - name: Setup Docker Buildx - uses: docker/setup-buildx-action@v2 + - name: Docker meta data + id: docker-meta-data + uses: docker/metadata-action@v4 + with: + images: codexrems/pims + flavor: latest=false - - name: Docker meta data - id: docker-meta-data - uses: docker/metadata-action@v4 - with: - images: codexrems/pims - flavor: latest=false + - name: Log in to Docker Hub + uses: docker/login-action@v1 + with: + username: ${{ secrets.DOCKER_USERNAME }} + password: ${{ secrets.DOCKER_TOKEN }} - - name: Log in to Docker Hub - uses: docker/login-action@v1 - with: - username: ${{ secrets.DOCKER_USERNAME }} - password: ${{ secrets.DOCKER_TOKEN }} - - - name: Build and push Server Docker image - uses: docker/build-push-action@v5 - with: - context: . - platforms: linux/amd64,linux/arm64 - push: true - tags: codexrems/pims:experimental - labels: ${{ steps.docker-meta-data.outputs.labels }} \ No newline at end of file + - name: Build and push Server Docker image + uses: docker/build-push-action@v5 + with: + context: . + platforms: linux/amd64,linux/arm64 + push: true + tags: codexrems/pims:experimental + labels: ${{ steps.docker-meta-data.outputs.labels }} diff --git a/.github/workflows/docker-cd.yml b/.github/workflows/docker-cd.yml index 770e920..f3e761f 100644 --- a/.github/workflows/docker-cd.yml +++ b/.github/workflows/docker-cd.yml @@ -2,40 +2,40 @@ name: Docker Image CD on: push: - branches: [ main ] + branches: [main] workflow_dispatch: jobs: - docker-cd: + docker-cd: runs-on: ubuntu-latest steps: + - name: Checkout Repository + uses: actions/checkout@v3 + with: + submodules: true + clean: true - - name: Checkout Repository - uses: actions/checkout@v3 - with: - submodules: true + - name: Setup Docker Buildx + uses: docker/setup-buildx-action@v2 - - name: Setup Docker Buildx - uses: docker/setup-buildx-action@v2 + - name: Docker meta data + id: docker-meta-data + uses: docker/metadata-action@v4 + with: + images: codexrems/pims + flavor: latest=false - - name: Docker meta data - id: docker-meta-data - uses: docker/metadata-action@v4 - with: - images: codexrems/pims - flavor: latest=false + - name: Log in to Docker Hub + uses: docker/login-action@v1 + with: + username: ${{ secrets.DOCKER_USERNAME }} + password: ${{ secrets.DOCKER_TOKEN }} - - name: Log in to Docker Hub - uses: docker/login-action@v1 - with: - username: ${{ secrets.DOCKER_USERNAME }} - password: ${{ secrets.DOCKER_TOKEN }} - - - name: Build and push Server Docker image - uses: docker/build-push-action@v5 - with: - context: . - platforms: linux/amd64,linux/arm64 - push: true - tags: codexrems/pims:latest - labels: ${{ steps.docker-meta-data.outputs.labels }} \ No newline at end of file + - name: Build and push Server Docker image + uses: docker/build-push-action@v5 + with: + context: . + platforms: linux/amd64,linux/arm64 + push: true + tags: codexrems/pims:latest + labels: ${{ steps.docker-meta-data.outputs.labels }} diff --git a/.github/workflows/docker-ci.yml b/.github/workflows/docker-ci.yml index 5edae1d..7920151 100644 --- a/.github/workflows/docker-ci.yml +++ b/.github/workflows/docker-ci.yml @@ -2,19 +2,18 @@ name: Docker Image CI on: pull_request: - branches: [ main, dev ] + branches: [main, dev] workflow_dispatch: - jobs: - docker-ci: + docker-ci: runs-on: ubuntu-latest steps: - - - name: Checkout Repository - uses: actions/checkout@v3 - with: + - name: Checkout Repository + uses: actions/checkout@v3 + with: submodules: true + clean: true - - name: Test Server Docker image Builds - run: docker build . \ No newline at end of file + - name: Test Server Docker image Builds + run: docker build . diff --git a/.github/workflows/docker-tag-cd.yml b/.github/workflows/docker-tag-cd.yml index 949d582..ec64f01 100644 --- a/.github/workflows/docker-tag-cd.yml +++ b/.github/workflows/docker-tag-cd.yml @@ -3,39 +3,39 @@ on: workflow_dispatch: push: tags: - - '*' + - "*" jobs: docker: runs-on: ubuntu-latest steps: + - name: Checkout Repository + uses: actions/checkout@v3 + with: + submodules: true + clean: true - - name: Checkout Repository - uses: actions/checkout@v3 - with: - submodules: true - - - name: Setup Docker Buildx - uses: docker/setup-buildx-action@v2 - - - name: Docker meta data - id: docker-meta-data - uses: docker/metadata-action@v4 - with: - images: codexrems/pims - flavor: latest=false + - name: Setup Docker Buildx + uses: docker/setup-buildx-action@v2 - - name: Log in to Docker Hub - uses: docker/login-action@v2 - with: - username: ${{ secrets.DOCKER_USERNAME }} - password: ${{ secrets.DOCKER_TOKEN }} + - name: Docker meta data + id: docker-meta-data + uses: docker/metadata-action@v4 + with: + images: codexrems/pims + flavor: latest=false - - name: Build and push - uses: docker/build-push-action@v5 - with: - context: . - push: true - platforms: linux/amd64,linux/arm64 - tags: ${{ steps.docker-meta-data.outputs.tags }} - labels: ${{ steps.docker-meta-data.outputs.labels }} + - name: Log in to Docker Hub + uses: docker/login-action@v2 + with: + username: ${{ secrets.DOCKER_USERNAME }} + password: ${{ secrets.DOCKER_TOKEN }} + + - name: Build and push + uses: docker/build-push-action@v5 + with: + context: . + push: true + platforms: linux/amd64,linux/arm64 + tags: ${{ steps.docker-meta-data.outputs.tags }} + labels: ${{ steps.docker-meta-data.outputs.labels }} diff --git a/LICENSE.md b/LICENSE.md index 261eeb9..c61b663 100644 --- a/LICENSE.md +++ b/LICENSE.md @@ -2,180 +2,180 @@ Version 2.0, January 2004 http://www.apache.org/licenses/ - TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION - - 1. Definitions. - - "License" shall mean the terms and conditions for use, reproduction, - and distribution as defined by Sections 1 through 9 of this document. - - "Licensor" shall mean the copyright owner or entity authorized by - the copyright owner that is granting the License. - - "Legal Entity" shall mean the union of the acting entity and all - other entities that control, are controlled by, or are under common - control with that entity. For the purposes of this definition, - "control" means (i) the power, direct or indirect, to cause the - direction or management of such entity, whether by contract or - otherwise, or (ii) ownership of fifty percent (50%) or more of the - outstanding shares, or (iii) beneficial ownership of such entity. - - "You" (or "Your") shall mean an individual or Legal Entity - exercising permissions granted by this License. - - "Source" form shall mean the preferred form for making modifications, - including but not limited to software source code, documentation - source, and configuration files. - - "Object" form shall mean any form resulting from mechanical - transformation or translation of a Source form, including but - not limited to compiled object code, generated documentation, - and conversions to other media types. - - "Work" shall mean the work of authorship, whether in Source or - Object form, made available under the License, as indicated by a - copyright notice that is included in or attached to the work - (an example is provided in the Appendix below). - - "Derivative Works" shall mean any work, whether in Source or Object - form, that is based on (or derived from) the Work and for which the - editorial revisions, annotations, elaborations, or other modifications - represent, as a whole, an original work of authorship. For the purposes - of this License, Derivative Works shall not include works that remain - separable from, or merely link (or bind by name) to the interfaces of, - the Work and Derivative Works thereof. - - "Contribution" shall mean any work of authorship, including - the original version of the Work and any modifications or additions - to that Work or Derivative Works thereof, that is intentionally - submitted to Licensor for inclusion in the Work by the copyright owner - or by an individual or Legal Entity authorized to submit on behalf of - the copyright owner. For the purposes of this definition, "submitted" - means any form of electronic, verbal, or written communication sent - to the Licensor or its representatives, including but not limited to - communication on electronic mailing lists, source code control systems, - and issue tracking systems that are managed by, or on behalf of, the - Licensor for the purpose of discussing and improving the Work, but - excluding communication that is conspicuously marked or otherwise - designated in writing by the copyright owner as "Not a Contribution." - - "Contributor" shall mean Licensor and any individual or Legal Entity - on behalf of whom a Contribution has been received by Licensor and - subsequently incorporated within the Work. - - 2. Grant of Copyright License. Subject to the terms and conditions of - this License, each Contributor hereby grants to You a perpetual, - worldwide, non-exclusive, no-charge, royalty-free, irrevocable - copyright license to reproduce, prepare Derivative Works of, - publicly display, publicly perform, sublicense, and distribute the - Work and such Derivative Works in Source or Object form. - - 3. Grant of Patent License. Subject to the terms and conditions of - this License, each Contributor hereby grants to You a perpetual, - worldwide, non-exclusive, no-charge, royalty-free, irrevocable - (except as stated in this section) patent license to make, have made, - use, offer to sell, sell, import, and otherwise transfer the Work, - where such license applies only to those patent claims licensable - by such Contributor that are necessarily infringed by their - Contribution(s) alone or by combination of their Contribution(s) - with the Work to which such Contribution(s) was submitted. If You - institute patent litigation against any entity (including a - cross-claim or counterclaim in a lawsuit) alleging that the Work - or a Contribution incorporated within the Work constitutes direct - or contributory patent infringement, then any patent licenses - granted to You under this License for that Work shall terminate - as of the date such litigation is filed. - - 4. Redistribution. You may reproduce and distribute copies of the - Work or Derivative Works thereof in any medium, with or without - modifications, and in Source or Object form, provided that You - meet the following conditions: - - (a) You must give any other recipients of the Work or - Derivative Works a copy of this License; and - - (b) You must cause any modified files to carry prominent notices - stating that You changed the files; and - - (c) You must retain, in the Source form of any Derivative Works - that You distribute, all copyright, patent, trademark, and - attribution notices from the Source form of the Work, - excluding those notices that do not pertain to any part of - the Derivative Works; and - - (d) If the Work includes a "NOTICE" text file as part of its - distribution, then any Derivative Works that You distribute must - include a readable copy of the attribution notices contained - within such NOTICE file, excluding those notices that do not - pertain to any part of the Derivative Works, in at least one - of the following places: within a NOTICE text file distributed - as part of the Derivative Works; within the Source form or - documentation, if provided along with the Derivative Works; or, - within a display generated by the Derivative Works, if and - wherever such third-party notices normally appear. The contents - of the NOTICE file are for informational purposes only and - do not modify the License. You may add Your own attribution - notices within Derivative Works that You distribute, alongside - or as an addendum to the NOTICE text from the Work, provided - that such additional attribution notices cannot be construed - as modifying the License. - - You may add Your own copyright statement to Your modifications and - may provide additional or different license terms and conditions - for use, reproduction, or distribution of Your modifications, or - for any such Derivative Works as a whole, provided Your use, - reproduction, and distribution of the Work otherwise complies with - the conditions stated in this License. - - 5. Submission of Contributions. Unless You explicitly state otherwise, - any Contribution intentionally submitted for inclusion in the Work - by You to the Licensor shall be under the terms and conditions of - this License, without any additional terms or conditions. - Notwithstanding the above, nothing herein shall supersede or modify - the terms of any separate license agreement you may have executed - with Licensor regarding such Contributions. - - 6. Trademarks. This License does not grant permission to use the trade - names, trademarks, service marks, or product names of the Licensor, - except as required for reasonable and customary use in describing the - origin of the Work and reproducing the content of the NOTICE file. - - 7. Disclaimer of Warranty. Unless required by applicable law or - agreed to in writing, Licensor provides the Work (and each - Contributor provides its Contributions) on an "AS IS" BASIS, - WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or - implied, including, without limitation, any warranties or conditions - of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A - PARTICULAR PURPOSE. You are solely responsible for determining the - appropriateness of using or redistributing the Work and assume any - risks associated with Your exercise of permissions under this License. - - 8. Limitation of Liability. In no event and under no legal theory, - whether in tort (including negligence), contract, or otherwise, - unless required by applicable law (such as deliberate and grossly - negligent acts) or agreed to in writing, shall any Contributor be - liable to You for damages, including any direct, indirect, special, - incidental, or consequential damages of any character arising as a - result of this License or out of the use or inability to use the - Work (including but not limited to damages for loss of goodwill, - work stoppage, computer failure or malfunction, or any and all - other commercial damages or losses), even if such Contributor - has been advised of the possibility of such damages. - - 9. Accepting Warranty or Additional Liability. While redistributing - the Work or Derivative Works thereof, You may choose to offer, - and charge a fee for, acceptance of support, warranty, indemnity, - or other liability obligations and/or rights consistent with this - License. However, in accepting such obligations, You may act only - on Your own behalf and on Your sole responsibility, not on behalf - of any other Contributor, and only if You agree to indemnify, - defend, and hold each Contributor harmless for any liability - incurred by, or claims asserted against, such Contributor by reason - of your accepting any such warranty or additional liability. - - END OF TERMS AND CONDITIONS - - APPENDIX: How to apply the Apache License to your work. +TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION + +1. Definitions. + + "License" shall mean the terms and conditions for use, reproduction, + and distribution as defined by Sections 1 through 9 of this document. + + "Licensor" shall mean the copyright owner or entity authorized by + the copyright owner that is granting the License. + + "Legal Entity" shall mean the union of the acting entity and all + other entities that control, are controlled by, or are under common + control with that entity. For the purposes of this definition, + "control" means (i) the power, direct or indirect, to cause the + direction or management of such entity, whether by contract or + otherwise, or (ii) ownership of fifty percent (50%) or more of the + outstanding shares, or (iii) beneficial ownership of such entity. + + "You" (or "Your") shall mean an individual or Legal Entity + exercising permissions granted by this License. + + "Source" form shall mean the preferred form for making modifications, + including but not limited to software source code, documentation + source, and configuration files. + + "Object" form shall mean any form resulting from mechanical + transformation or translation of a Source form, including but + not limited to compiled object code, generated documentation, + and conversions to other media types. + + "Work" shall mean the work of authorship, whether in Source or + Object form, made available under the License, as indicated by a + copyright notice that is included in or attached to the work + (an example is provided in the Appendix below). + + "Derivative Works" shall mean any work, whether in Source or Object + form, that is based on (or derived from) the Work and for which the + editorial revisions, annotations, elaborations, or other modifications + represent, as a whole, an original work of authorship. For the purposes + of this License, Derivative Works shall not include works that remain + separable from, or merely link (or bind by name) to the interfaces of, + the Work and Derivative Works thereof. + + "Contribution" shall mean any work of authorship, including + the original version of the Work and any modifications or additions + to that Work or Derivative Works thereof, that is intentionally + submitted to Licensor for inclusion in the Work by the copyright owner + or by an individual or Legal Entity authorized to submit on behalf of + the copyright owner. For the purposes of this definition, "submitted" + means any form of electronic, verbal, or written communication sent + to the Licensor or its representatives, including but not limited to + communication on electronic mailing lists, source code control systems, + and issue tracking systems that are managed by, or on behalf of, the + Licensor for the purpose of discussing and improving the Work, but + excluding communication that is conspicuously marked or otherwise + designated in writing by the copyright owner as "Not a Contribution." + + "Contributor" shall mean Licensor and any individual or Legal Entity + on behalf of whom a Contribution has been received by Licensor and + subsequently incorporated within the Work. + +2. Grant of Copyright License. Subject to the terms and conditions of + this License, each Contributor hereby grants to You a perpetual, + worldwide, non-exclusive, no-charge, royalty-free, irrevocable + copyright license to reproduce, prepare Derivative Works of, + publicly display, publicly perform, sublicense, and distribute the + Work and such Derivative Works in Source or Object form. + +3. Grant of Patent License. Subject to the terms and conditions of + this License, each Contributor hereby grants to You a perpetual, + worldwide, non-exclusive, no-charge, royalty-free, irrevocable + (except as stated in this section) patent license to make, have made, + use, offer to sell, sell, import, and otherwise transfer the Work, + where such license applies only to those patent claims licensable + by such Contributor that are necessarily infringed by their + Contribution(s) alone or by combination of their Contribution(s) + with the Work to which such Contribution(s) was submitted. If You + institute patent litigation against any entity (including a + cross-claim or counterclaim in a lawsuit) alleging that the Work + or a Contribution incorporated within the Work constitutes direct + or contributory patent infringement, then any patent licenses + granted to You under this License for that Work shall terminate + as of the date such litigation is filed. + +4. Redistribution. You may reproduce and distribute copies of the + Work or Derivative Works thereof in any medium, with or without + modifications, and in Source or Object form, provided that You + meet the following conditions: + + (a) You must give any other recipients of the Work or + Derivative Works a copy of this License; and + + (b) You must cause any modified files to carry prominent notices + stating that You changed the files; and + + (c) You must retain, in the Source form of any Derivative Works + that You distribute, all copyright, patent, trademark, and + attribution notices from the Source form of the Work, + excluding those notices that do not pertain to any part of + the Derivative Works; and + + (d) If the Work includes a "NOTICE" text file as part of its + distribution, then any Derivative Works that You distribute must + include a readable copy of the attribution notices contained + within such NOTICE file, excluding those notices that do not + pertain to any part of the Derivative Works, in at least one + of the following places: within a NOTICE text file distributed + as part of the Derivative Works; within the Source form or + documentation, if provided along with the Derivative Works; or, + within a display generated by the Derivative Works, if and + wherever such third-party notices normally appear. The contents + of the NOTICE file are for informational purposes only and + do not modify the License. You may add Your own attribution + notices within Derivative Works that You distribute, alongside + or as an addendum to the NOTICE text from the Work, provided + that such additional attribution notices cannot be construed + as modifying the License. + + You may add Your own copyright statement to Your modifications and + may provide additional or different license terms and conditions + for use, reproduction, or distribution of Your modifications, or + for any such Derivative Works as a whole, provided Your use, + reproduction, and distribution of the Work otherwise complies with + the conditions stated in this License. + +5. Submission of Contributions. Unless You explicitly state otherwise, + any Contribution intentionally submitted for inclusion in the Work + by You to the Licensor shall be under the terms and conditions of + this License, without any additional terms or conditions. + Notwithstanding the above, nothing herein shall supersede or modify + the terms of any separate license agreement you may have executed + with Licensor regarding such Contributions. + +6. Trademarks. This License does not grant permission to use the trade + names, trademarks, service marks, or product names of the Licensor, + except as required for reasonable and customary use in describing the + origin of the Work and reproducing the content of the NOTICE file. + +7. Disclaimer of Warranty. Unless required by applicable law or + agreed to in writing, Licensor provides the Work (and each + Contributor provides its Contributions) on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or + implied, including, without limitation, any warranties or conditions + of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A + PARTICULAR PURPOSE. You are solely responsible for determining the + appropriateness of using or redistributing the Work and assume any + risks associated with Your exercise of permissions under this License. + +8. Limitation of Liability. In no event and under no legal theory, + whether in tort (including negligence), contract, or otherwise, + unless required by applicable law (such as deliberate and grossly + negligent acts) or agreed to in writing, shall any Contributor be + liable to You for damages, including any direct, indirect, special, + incidental, or consequential damages of any character arising as a + result of this License or out of the use or inability to use the + Work (including but not limited to damages for loss of goodwill, + work stoppage, computer failure or malfunction, or any and all + other commercial damages or losses), even if such Contributor + has been advised of the possibility of such damages. + +9. Accepting Warranty or Additional Liability. While redistributing + the Work or Derivative Works thereof, You may choose to offer, + and charge a fee for, acceptance of support, warranty, indemnity, + or other liability obligations and/or rights consistent with this + License. However, in accepting such obligations, You may act only + on Your own behalf and on Your sole responsibility, not on behalf + of any other Contributor, and only if You agree to indemnify, + defend, and hold each Contributor harmless for any liability + incurred by, or claims asserted against, such Contributor by reason + of your accepting any such warranty or additional liability. + +END OF TERMS AND CONDITIONS + +APPENDIX: How to apply the Apache License to your work. To apply the Apache License to your work, attach the following boilerplate notice, with the fields enclosed by brackets "[]" @@ -186,16 +186,16 @@ same "printed page" as the copyright notice for easier identification within third-party archives. - Copyright [yyyy] [name of copyright owner] +Copyright [yyyy] [name of copyright owner] - Licensed under the Apache License, Version 2.0 (the "License"); - you may not use this file except in compliance with the License. - You may obtain a copy of the License at +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 - Unless required by applicable law or agreed to in writing, software - distributed under the License is distributed on an "AS IS" BASIS, - WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - See the License for the specific language governing permissions and - limitations under the License. +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. diff --git a/backend/package-lock.json b/backend/package-lock.json index 4ff2a8b..3b83609 100644 --- a/backend/package-lock.json +++ b/backend/package-lock.json @@ -9,11 +9,11 @@ "version": "0.1.0", "dependencies": { "@types/node": "^16.18.2", - "axios": "^1.7.7", + "axios": "^1.9.0", "body-parser": "^1.20.1", "body-parser-xml": "^2.0.3", "cors": "^2.8.5", - "express": "^4.21.1", + "express": "^4.21.2", "fast-xml-parser": "^4.3.2", "mongoose": "^8.9.5", "var": "^0.4.0", @@ -2042,7 +2042,9 @@ "license": "MIT" }, "node_modules/axios": { - "version": "1.7.7", + "version": "1.9.0", + "resolved": "https://registry.npmjs.org/axios/-/axios-1.9.0.tgz", + "integrity": "sha512-re4CqKTJaURpzbLHtIi6XpDv20/CnpXOtjRY5/CU32L8gU8ek9UIivcfvSWvmKEngmVbrUtPpdDwWDWL7DNHvg==", "license": "MIT", "dependencies": { "follow-redirects": "^1.15.6", @@ -3027,7 +3029,9 @@ } }, "node_modules/express": { - "version": "4.21.1", + "version": "4.21.2", + "resolved": "https://registry.npmjs.org/express/-/express-4.21.2.tgz", + "integrity": "sha512-28HqgMZAmih1Czt9ny7qr6ek2qddF4FclbMzwhCREB6OFfH+rXAnuNCwo1/wFvrtbgsQDb4kSbX9de9lFbrXnA==", "license": "MIT", "dependencies": { "accepts": "~1.3.8", @@ -3049,7 +3053,7 @@ "methods": "~1.1.2", "on-finished": "2.4.1", "parseurl": "~1.3.3", - "path-to-regexp": "0.1.10", + "path-to-regexp": "0.1.12", "proxy-addr": "~2.0.7", "qs": "6.13.0", "range-parser": "~1.2.1", @@ -3064,6 +3068,10 @@ }, "engines": { "node": ">= 0.10.0" + }, + "funding": { + "type": "opencollective", + "url": "https://opencollective.com/express" } }, "node_modules/express/node_modules/debug": { @@ -4748,7 +4756,9 @@ "license": "MIT" }, "node_modules/path-to-regexp": { - "version": "0.1.10", + "version": "0.1.12", + "resolved": "https://registry.npmjs.org/path-to-regexp/-/path-to-regexp-0.1.12.tgz", + "integrity": "sha512-RA1GjUVMnvYFxuqovrEqZoxxW5NUZqbwKtYz/Tt7nXerk0LbLblQmrsgdeOxV5SFHf0UDggjS/bSeOZwt1pmEQ==", "license": "MIT" }, "node_modules/path-type": { diff --git a/backend/package.json b/backend/package.json index e86aa27..35b4065 100644 --- a/backend/package.json +++ b/backend/package.json @@ -4,11 +4,11 @@ "private": true, "dependencies": { "@types/node": "^16.18.2", - "axios": "^1.7.7", + "axios": "^1.9.0", "body-parser": "^1.20.1", "body-parser-xml": "^2.0.3", "cors": "^2.8.5", - "express": "^4.21.1", + "express": "^4.21.2", "fast-xml-parser": "^4.3.2", "mongoose": "^8.9.5", "var": "^0.4.0", diff --git a/backend/src/database/data.js b/backend/src/database/data.js index 873fb05..5a395ce 100644 --- a/backend/src/database/data.js +++ b/backend/src/database/data.js @@ -1,21 +1,25 @@ export const medicationRequestToRemsAdmins = Object.freeze([ { rxnorm: 2183126, + ndc: '65597-407-20', display: 'Turalio 200 MG Oral Capsule', remsAdminFhirUrl: process.env.REMS_ADMIN_FHIR_URL || 'http://localhost:8090/4_0_0' }, { rxnorm: 6064, + ndc: '0245-0571-01', display: 'Isotretinoin 20 MG Oral Capsule', remsAdminFhirUrl: process.env.REMS_ADMIN_FHIR_URL || 'http://localhost:8090/4_0_0' }, { rxnorm: 1237051, + ndc: '63459-502-30', display: 'TIRF 200 UG Oral Transmucosal Lozenge', remsAdminFhirUrl: process.env.REMS_ADMIN_FHIR_URL || 'http://localhost:8090/4_0_0' }, { rxnorm: 1666386, + ndc: '58604-214-30', display: 'Addyi 100 MG Oral Tablet', remsAdminFhirUrl: process.env.REMS_ADMIN_FHIR_URL || 'http://localhost:8090/4_0_0' } diff --git a/backend/src/database/schemas/doctorOrderSchemas.js b/backend/src/database/schemas/doctorOrderSchemas.js index 0229505..aba505c 100644 --- a/backend/src/database/schemas/doctorOrderSchemas.js +++ b/backend/src/database/schemas/doctorOrderSchemas.js @@ -1,7 +1,7 @@ import mongoose from 'mongoose'; export const orderSchema = new mongoose.Schema({ + orderId: String, caseNumber: String, - authNumber: String, prescriberOrderNumber: String, patientName: String, patientFirstName: String, @@ -25,21 +25,20 @@ export const orderSchema = new mongoose.Schema({ total: Number, pickupDate: String, dispenseStatus: String, - metRequirements: - [ - { - name: String, - resource: { - status: String, - moduleUri: String, - resourceType: String, - note: [{ text: String }], - subject: { - reference: String - } + metRequirements: [ + { + name: String, + resource: { + status: String, + moduleUri: String, + resourceType: String, + note: [{ text: String }], + subject: { + reference: String } } - ] + } + ] }); // Compound index is used to prevent duplicates based off of the given parameters diff --git a/backend/src/routes/doctorOrders.js b/backend/src/routes/doctorOrders.js index 8f5ba55..a7d101e 100644 --- a/backend/src/routes/doctorOrders.js +++ b/backend/src/routes/doctorOrders.js @@ -249,9 +249,17 @@ router.delete('/api/deleteAll', async (req, res) => { }); const isRemsDrug = order => { - return medicationRequestToRemsAdmins.some( - entry => Number(order.drugRxnormCode) === Number(entry.rxnorm) - ); + return medicationRequestToRemsAdmins.some(entry => { + if (order.drugNdcCode && entry.ndc) { + return order.drugNdcCode === entry.ndc; + } + + if (order.drugRxnormCode && entry.rxnorm) { + return Number(order.drugRxnormCode) === Number(entry.rxnorm); + } + + return false; + }); }; const getEtasuUrl = order => { @@ -260,9 +268,16 @@ const getEtasuUrl = order => { if (env.USE_INTERMEDIARY) { baseUrl = env.INTERMEDIARY_FHIR_URL; } else { - const rxnorm = order.drugRxnormCode; const remsDrug = medicationRequestToRemsAdmins.find(entry => { - return Number(rxnorm) === Number(entry.rxnorm); + if (order.drugNdcCode && entry.ndc) { + return order.drugNdcCode === entry.ndc; + } + + if (order.drugRxnormCode && entry.rxnorm) { + return Number(order.drugRxnormCode) === Number(entry.rxnorm); + } + + return false; }); baseUrl = remsDrug?.remsAdminFhirUrl; } @@ -278,19 +293,49 @@ const getGuidanceResponse = async order => { return null; } - // Make the etasu call with the auth number if it exists, if not call with patient and medication + // Make the etasu call with the case number if it exists, if not call with patient and medication let body = {}; - if (order.authNumber !== '' && !env.USE_INTERMEDIARY) { + if (order.caseNumber && !env.USE_INTERMEDIARY) { body = { resourceType: 'Parameters', parameter: [ { - name: 'authNumber', - valueString: order.authNumber + name: 'caseNumber', + valueString: order.caseNumber } ] }; } else { + let medicationCoding = []; + + if (order.drugNdcCode) { + medicationCoding.push({ + system: 'http://hl7.org/fhir/sid/ndc', + code: order.drugNdcCode, + display: order.drugNames + }); + } + + if (order.drugRxnormCode) { + medicationCoding.push({ + system: 'http://www.nlm.nih.gov/research/umls/rxnorm', + code: order.drugRxnormCode, + display: order.drugNames + }); + } else { + const remsDrug = medicationRequestToRemsAdmins.find(entry => { + return order.drugNdcCode && entry.ndc && order.drugNdcCode === entry.ndc; + }); + + if (remsDrug && remsDrug.rxnorm) { + medicationCoding.push({ + system: 'http://www.nlm.nih.gov/research/umls/rxnorm', + code: remsDrug.rxnorm.toString(), + display: order.drugNames + }); + } + } + body = { resourceType: 'Parameters', parameter: [ @@ -315,13 +360,7 @@ const getGuidanceResponse = async order => { resourceType: 'Medication', id: order.prescriberOrderNumber, code: { - coding: [ - { - system: 'http://www.nlm.nih.gov/research/umls/rxnorm', - code: order.drugRxnormCode, - display: order.drugNames - } - ] + coding: medicationCoding } } } @@ -334,7 +373,7 @@ const getGuidanceResponse = async order => { 'content-type': 'application/json' } }); - console.log('Retrieved order', response); + console.log('Retrieved order', JSON.stringify(response.data, null, 4)); console.log('URL', etasuUrl); const responseResource = response.data.parameter?.[0]?.resource; return responseResource; @@ -356,10 +395,10 @@ const getDispenseStatus = (order, guidanceResponse) => { * Return : Mongoose schema of a newOrder */ async function parseNCPDPScript(newRx) { - // Parsing XML NCPDP SCRIPT from EHR + // Parsing XML NCPDP SCRIPT from EHR const incompleteOrder = { - caseNumber: newRx.Message.Header.MessageID.toString(), // Will need to return to this and use actual pt identifier or uuid - authNumber: newRx.Message.Header.AuthorizationNumber, + orderId: newRx.Message.Header.MessageID.toString(), // Will need to return to this and use actual pt identifier or uuid + caseNumber: newRx.Message.Header.AuthorizationNumber, prescriberOrderNumber: newRx.Message.Header.PrescriberOrderNumber, patientName: newRx.Message.Body.NewRx.Patient.HumanPatient.Name.FirstName + @@ -385,8 +424,15 @@ async function parseNCPDPScript(newRx) { newRx.Message.Body.NewRx.Prescriber.NonVeterinarian.CommunicationNumbers.ElectronicMail, drugNames: newRx.Message.Body.NewRx.MedicationPrescribed.DrugDescription, simpleDrugName: newRx.Message.Body.NewRx.MedicationPrescribed.DrugDescription.split(' ')[0], - drugNdcCode: newRx.Message.Body.NewRx.MedicationPrescribed.DrugCoded.ProductCode.Code, - drugRxnormCode: newRx.Message.Body.NewRx.MedicationPrescribed.DrugCoded.DrugDBCode.Code, + + drugNdcCode: + newRx.Message.Body.NewRx.MedicationPrescribed.DrugCoded.ProductCode?.Code || + newRx.Message.Body.NewRx.MedicationPrescribed.DrugCoded.NDC || + null, + + drugRxnormCode: + newRx.Message.Body.NewRx.MedicationPrescribed.DrugCoded.DrugDBCode?.Code || null, + rxDate: newRx.Message.Body.NewRx.MedicationPrescribed.WrittenDate.Date, drugPrice: 200, // Add later? quantities: newRx.Message.Body.NewRx.MedicationPrescribed.Quantity.Value, diff --git a/frontend/.eslintrc b/frontend/.eslintrc index 5d540f2..64fe830 100644 --- a/frontend/.eslintrc +++ b/frontend/.eslintrc @@ -1,9 +1,6 @@ { "parser": "@typescript-eslint/parser", - "extends": [ - "plugin:@typescript-eslint/recommended", - "prettier" - ], + "extends": ["plugin:@typescript-eslint/recommended", "prettier"], "parserOptions": { "ecmaVersion": 2018, "sourceType": "module" @@ -14,6 +11,6 @@ "@typescript-eslint/ban-ts-comment": "off", "@typescript-eslint/explicit-function-return-type": "off", "@typescript-eslint/no-empty-function": "off", - "@typescript-eslint/no-explicit-any": "off", + "@typescript-eslint/no-explicit-any": "off" } -} \ No newline at end of file +} diff --git a/frontend/package-lock.json b/frontend/package-lock.json index 557489b..ca85400 100644 --- a/frontend/package-lock.json +++ b/frontend/package-lock.json @@ -19,14 +19,14 @@ "@types/node": "^16.18.2", "@types/react": "^18.0.23", "@types/react-dom": "^18.0.7", - "@vitejs/plugin-react": "^4.3.3", - "axios": "^1.7.8", + "@vitejs/plugin-react": "^4.5.2", + "axios": "^1.9.0", "react": "^18.2.0", "react-dom": "^18.2.0", "react-router-dom": "^6.4.4", "react-scripts": "^5.0.1", "var": "^0.4.0", - "vite": "^5.4.10", + "vite": "^5.4.19", "vite-tsconfig-paths": "^5.0.1", "web-vitals": "^2.1.4", "xml2js": "0.6.0" @@ -103,40 +103,44 @@ } }, "node_modules/@babel/code-frame": { - "version": "7.25.9", - "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.25.9.tgz", - "integrity": "sha512-z88xeGxnzehn2sqZ8UdGQEvYErF1odv2CftxInpSYJt6uHuPe9YjahKZITGs3l5LeI9d2ROG+obuDAoSlqbNfQ==", + "version": "7.27.1", + "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.27.1.tgz", + "integrity": "sha512-cjQ7ZlQ0Mv3b47hABuTevyTuYN4i+loJKGeV9flcCgIK37cCXRh+L1bd3iBHlynerhQ7BhCkn2BPbQUL+rGqFg==", + "license": "MIT", "dependencies": { - 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