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Error of installation in computer cluster #19

@coffeedealer

Description

@coffeedealer

Hey,

I was trying to install it in the computer cluster I faced some problems.
Here the steps followed together with the final error:

  1. Create a conda environment
  2. Load modules gcc cmake openmpi
  3. Installation as
    CONDA_OVERRIDE_CUDA=12.4 conda install -c metatensor -c conda-forge "lammps-metatomic=*=cuda*HOPPER90*openmpi*"

Error:

`(lammps-metatomic) [rurodrig@kuma2 lammps-metatomic]$ CONDA_OVERRIDE_CUDA=12.4 conda install -c metatensor -c conda-forge "lammps-metatomic=*=cuda*HOPPER90*openmpi*"
Collecting package metadata (current_repodata.json): failed

ERROR REPORT 

    Traceback (most recent call last):
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/exceptions.py", line 1082, in __call__
        return func(*args, **kwargs)
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/cli/main.py", line 87, in _main
        exit_code = do_call(args, p)
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/cli/conda_argparse.py", line 84, in do_call
        return getattr(module, func_name)(args, parser)
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/cli/main_install.py", line 20, in execute
        install(args, parser, 'install')
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/cli/install.py", line 260, in install
        unlink_link_transaction = solver.solve_for_transaction(
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 152, in solve_for_transaction
        unlink_precs, link_precs = self.solve_for_diff(update_modifier, deps_modifier,
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 195, in solve_for_diff
        final_precs = self.solve_final_state(update_modifier, deps_modifier, prune, ignore_pinned,
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 300, in solve_final_state
        ssc = self._collect_all_metadata(ssc)
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/common/io.py", line 88, in decorated
        return f(*args, **kwds)
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 463, in _collect_all_metadata
        index, r = self._prepare(prepared_specs)
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 1058, in _prepare
        reduced_index = get_reduced_index(self.prefix, self.channels,
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/index.py", line 291, in get_reduced_index
        push_record(record)
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/index.py", line 265, in push_record
        combined_depends = record.combined_depends
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/models/records.py", line 340, in combined_depends
        result = {ms.name: ms for ms in MatchSpec.merge(self.depends)}
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/models/match_spec.py", line 478, in merge
        reduce(lambda x, y: x._merge(y, union), group) if len(group) > 1 else group[0]
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/models/match_spec.py", line 478, in <lambda>
        reduce(lambda x, y: x._merge(y, union), group) if len(group) > 1 else group[0]
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/models/match_spec.py", line 509, in _merge
        final = this_component.merge(that_component)
      File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/models/match_spec.py", line 760, in merge
        raise ValueError("Incompatible component merge:\n  - %r\n  - %r"
    ValueError: Incompatible component merge:
      - 'mpi_mpich*'
      - 'mpi_mpich_*'
$ /home/rurodrig/anaconda3/bin/conda install -c metatensor -c conda-forge lammps-metatomic=*=cuda*HOPPER90*openmpi*

  environment variables:
             ACLOCAL_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_6
                          4_v3/gcc-11.4.1/cmake-3.27.9-xu5ws5kqxy5ofkqxwjqko77ik76it3o6/share/ac
                          local
     BUNDLED_DEBUGPY_PATH=/home/rurodrig/.vscode-server/extensions/ms-
                          python.debugpy-2025.10.0-linux-x64/bundled/libs/debugpy
                 CIO_TEST=<not set>
        CMAKE_PREFIX_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
                          gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc:/ssoft/spack
                          /pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.
                          4.1/cuda-12.4.1-hevc6ydw56jqswhgpyq5sy7a3466fsfv:/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/gcc
                          -13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj:/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/cma
                          ke-3.27.9-xu5ws5kqxy5ofkqxwjqko77ik76it3o6
        CONDA_DEFAULT_ENV=lammps-metatomic
                CONDA_EXE=/home/rurodrig/anaconda3/bin/conda
      CONDA_OVERRIDE_CUDA=12.4
             CONDA_PREFIX=/home/rurodrig/anaconda3/envs/lammps-metatomic
           CONDA_PREFIX_1=/home/rurodrig/anaconda3
    CONDA_PROMPT_MODIFIER=(lammps-metatomic)
         CONDA_PYTHON_EXE=/home/rurodrig/anaconda3/bin/python
               CONDA_ROOT=/home/rurodrig/anaconda3
              CONDA_SHLVL=2
           CURL_CA_BUNDLE=<not set>
                    FPATH=/usr/share/lmod/lmod/init/ksh_funcs
          LD_LIBRARY_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
                          gcc-13.2.0/libfabric-1.21.0-sqii3ip6c5hiwuzezib5dow4mfylfk4y/lib64:/ss
                          oft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/gcc
                          -13.2.0/libfabric-1.21.0-sqii3ip6c5hiwuzezib5dow4mfylfk4y/lib:/ssoft/s
                          pack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/gcc-13.2
                          .0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/lib:/ssoft/spack/pin
                          ot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/
                          cuda-12.4.1-hevc6ydw56jqswhgpyq5sy7a3466fsfv/lib64:/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/gcc
                          -13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/lib64:/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/gcc
                          -13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/lib
        LMOD_PACKAGE_PATH=/etc/lmod
                  MANPATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
                          gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/share/man:/s
                          soft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_
                          v3/gcc-11.4.1/gcc-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/share/man::
               MODULEPATH=/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/share/spack/lmod/kuma-h100/linux-
                          rhel9-x86_64/openmpi/5.0.3-xwxrcsp/gcc/13.2.0:/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/share/spack/lmod/kuma-h100/linux-rhel9-x86_64/
                          gcc/13.2.0:/ssoft/spack/kuma-h100_stable/share/spack/lmod/kuma-h100/li
                          nux-rhel9-x86_64/Core
                     PATH=/home/rurodrig/anaconda3/bin:/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/gcc-13.2.0/openmpi-
                          5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/bin:/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/cud
                          a-12.4.1-hevc6ydw56jqswhgpyq5sy7a3466fsfv/bin:/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/gcc
                          -13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/bin:/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/cma
                          ke-3.27.9-xu5ws5kqxy5ofkqxwjqko77ik76it3o6/bin:/home/rurodrig/cmds:/ho
                          me/rurodrig/.vscode-server/cli/servers/Stable-6f17636121051a53c88d3e60
                          5c491d22af2ba755/server/bin/remote-
                          cli:/home/rurodrig/anaconda3/envs/lammps-metatomic/bin:/home/rurodrig/
                          anaconda3/condabin:/home/rurodrig/.local/bin:/home/rurodrig/bin:/usr/l
                          ib64/ccache:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/pup
                          petlabs/bin:/home/rurodrig/.vscode-server/extensions/ms-python.debugpy
                          -2025.10.0-linux-x64/bundled/scripts/noConfigScripts:/home/rurodrig/.v
                          scode-server/data/User/globalStorage/github.copilot-chat/debugCommand
          PKG_CONFIG_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
                          gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/lib/pkgconfi
                          g
       REQUESTS_CA_BUNDLE=<not set>
 SPACK_SYSTEM_CONFIG_PATH=/ssoft/spack/kuma-h100_stable/var/spack/environments/kuma-h100
            SSL_CERT_FILE=/etc/pki/ca-trust/extracted/pem/tls-ca-bundle.pem
__LMOD_REF_COUNT_ACLOCAL_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_6
                          4_v3/gcc-11.4.1/cmake-3.27.9-xu5ws5kqxy5ofkqxwjqko77ik76it3o6/share/ac
                          local:1
__LMOD_REF_COUNT_CMAKE_PREFIX_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
                          gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc:1;/ssoft/spa
                          ck/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-1
                          1.4.1/cuda-12.4.1-hevc6ydw56jqswhgpyq5sy7a3466fsfv:1;/ssoft/spack/pino
                          t-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/g
                          cc-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj:1;/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/cma
                          ke-3.27.9-xu5ws5kqxy5ofkqxwjqko77ik76it3o6:1
__LMOD_REF_COUNT_LD_LIBRARY_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
                          gcc-13.2.0/libfabric-1.21.0-sqii3ip6c5hiwuzezib5dow4mfylfk4y/lib64:1;/
                          ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/g
                          cc-13.2.0/libfabric-1.21.0-sqii3ip6c5hiwuzezib5dow4mfylfk4y/lib:1;/sso
                          ft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/gcc-
                          13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/lib:1;/ssoft/spa
                          ck/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-1
                          1.4.1/cuda-12.4.1-hevc6ydw56jqswhgpyq5sy7a3466fsfv/lib64:1;/ssoft/spac
                          k/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11
                          .4.1/gcc-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/lib64:1;/ssoft/spack/
                          pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4
                          .1/gcc-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/lib:1
 __LMOD_REF_COUNT_MANPATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
                          gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/share/man:1;
                          /ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_6
                          4_v3/gcc-11.4.1/gcc-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/share/man:
                          1
__LMOD_REF_COUNT_MODULEPATH=/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/share/spack/lmod/kuma-h100/linux-
                          rhel9-x86_64/openmpi/5.0.3-xwxrcsp/gcc/13.2.0:1;/ssoft/spack/pinot-
                          noir/kuma-h100/v2/spack/share/spack/lmod/kuma-h100/linux-rhel9-x86_64/
                          gcc/13.2.0:1;/ssoft/spack/kuma-h100_stable/share/spack/lmod/kuma-h100/
                          linux-rhel9-x86_64/Core:1
    __LMOD_REF_COUNT_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
                          gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/bin:1;/ssoft
                          /spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/g
                          cc-11.4.1/cuda-12.4.1-hevc6ydw56jqswhgpyq5sy7a3466fsfv/bin:1;/ssoft/sp
                          ack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-
                          11.4.1/gcc-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/bin:1;/ssoft/spack/
                          pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4
                          .1/cmake-3.27.9-xu5ws5kqxy5ofkqxwjqko77ik76it3o6/bin:1;/home/rurodrig/
                          cmds:2;/home/rurodrig/.vscode-server/cli/servers/Stable-6f17636121051a
                          53c88d3e605c491d22af2ba755/server/bin/remote-
                          cli:1;/home/rurodrig/anaconda3/envs/lammps-metatomic/bin:1;/home/rurod
                          rig/anaconda3/condabin:1;/home/rurodrig/.local/bin:1;/home/rurodrig/bi
                          n:1;/usr/lib64/ccache:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;
                          /usr/sbin:1;/opt/puppetlabs/bin:1;/home/rurodrig/.vscode-
                          server/extensions/ms-python.debugpy-2025.10.0-linux-x64/bundled/script
                          s/noConfigScripts:1;/home/rurodrig/.vscode-
                          server/data/User/globalStorage/github.copilot-chat/debugCommand:1
__LMOD_REF_COUNT_PKG_CONFIG_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
                          gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/lib/pkgconfi
                          g:1

     active environment : lammps-metatomic
    active env location : /home/rurodrig/anaconda3/envs/lammps-metatomic
            shell level : 2
       user config file : /home/rurodrig/.condarc
 populated config files : /home/rurodrig/.condarc
          conda version : 4.12.0
    conda-build version : 3.18.11
         python version : 3.8.3.final.0
       virtual packages : __cuda=12.4=0
                          __linux=5.14.0=0
                          __glibc=2.34=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /home/rurodrig/anaconda3  (writable)
      conda av data dir : /home/rurodrig/anaconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/metatensor/linux-64
                          https://conda.anaconda.org/metatensor/noarch
                          https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/rurodrig/anaconda3/pkgs
                          /home/rurodrig/.conda/pkgs
       envs directories : /home/rurodrig/anaconda3/envs
                          /home/rurodrig/.conda/envs
               platform : linux-64
             user-agent : conda/4.12.0 requests/2.24.0 CPython/3.8.3 Linux/5.14.0-427.42.1.el9_4.x86_64 rhel/9.4 glibc/2.34
                UID:GID : 278790:10613
             netrc file : None
           offline mode : False


An unexpected error has occurred. Conda has prepared the above report.`

Any suggestion to fix the installation?

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