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Description
Hey,
I was trying to install it in the computer cluster I faced some problems.
Here the steps followed together with the final error:
- Create a conda environment
- Load modules gcc cmake openmpi
- Installation as
CONDA_OVERRIDE_CUDA=12.4 conda install -c metatensor -c conda-forge "lammps-metatomic=*=cuda*HOPPER90*openmpi*"
Error:
`(lammps-metatomic) [rurodrig@kuma2 lammps-metatomic]$ CONDA_OVERRIDE_CUDA=12.4 conda install -c metatensor -c conda-forge "lammps-metatomic=*=cuda*HOPPER90*openmpi*"
Collecting package metadata (current_repodata.json): failed
ERROR REPORT
Traceback (most recent call last):
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/exceptions.py", line 1082, in __call__
return func(*args, **kwargs)
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/cli/main.py", line 87, in _main
exit_code = do_call(args, p)
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/cli/conda_argparse.py", line 84, in do_call
return getattr(module, func_name)(args, parser)
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/cli/main_install.py", line 20, in execute
install(args, parser, 'install')
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/cli/install.py", line 260, in install
unlink_link_transaction = solver.solve_for_transaction(
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 152, in solve_for_transaction
unlink_precs, link_precs = self.solve_for_diff(update_modifier, deps_modifier,
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 195, in solve_for_diff
final_precs = self.solve_final_state(update_modifier, deps_modifier, prune, ignore_pinned,
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 300, in solve_final_state
ssc = self._collect_all_metadata(ssc)
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/common/io.py", line 88, in decorated
return f(*args, **kwds)
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 463, in _collect_all_metadata
index, r = self._prepare(prepared_specs)
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 1058, in _prepare
reduced_index = get_reduced_index(self.prefix, self.channels,
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/index.py", line 291, in get_reduced_index
push_record(record)
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/core/index.py", line 265, in push_record
combined_depends = record.combined_depends
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/models/records.py", line 340, in combined_depends
result = {ms.name: ms for ms in MatchSpec.merge(self.depends)}
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/models/match_spec.py", line 478, in merge
reduce(lambda x, y: x._merge(y, union), group) if len(group) > 1 else group[0]
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/models/match_spec.py", line 478, in <lambda>
reduce(lambda x, y: x._merge(y, union), group) if len(group) > 1 else group[0]
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/models/match_spec.py", line 509, in _merge
final = this_component.merge(that_component)
File "/home/rurodrig/anaconda3/lib/python3.8/site-packages/conda/models/match_spec.py", line 760, in merge
raise ValueError("Incompatible component merge:\n - %r\n - %r"
ValueError: Incompatible component merge:
- 'mpi_mpich*'
- 'mpi_mpich_*'
$ /home/rurodrig/anaconda3/bin/conda install -c metatensor -c conda-forge lammps-metatomic=*=cuda*HOPPER90*openmpi*
environment variables:
ACLOCAL_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_6
4_v3/gcc-11.4.1/cmake-3.27.9-xu5ws5kqxy5ofkqxwjqko77ik76it3o6/share/ac
local
BUNDLED_DEBUGPY_PATH=/home/rurodrig/.vscode-server/extensions/ms-
python.debugpy-2025.10.0-linux-x64/bundled/libs/debugpy
CIO_TEST=<not set>
CMAKE_PREFIX_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc:/ssoft/spack
/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.
4.1/cuda-12.4.1-hevc6ydw56jqswhgpyq5sy7a3466fsfv:/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/gcc
-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj:/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/cma
ke-3.27.9-xu5ws5kqxy5ofkqxwjqko77ik76it3o6
CONDA_DEFAULT_ENV=lammps-metatomic
CONDA_EXE=/home/rurodrig/anaconda3/bin/conda
CONDA_OVERRIDE_CUDA=12.4
CONDA_PREFIX=/home/rurodrig/anaconda3/envs/lammps-metatomic
CONDA_PREFIX_1=/home/rurodrig/anaconda3
CONDA_PROMPT_MODIFIER=(lammps-metatomic)
CONDA_PYTHON_EXE=/home/rurodrig/anaconda3/bin/python
CONDA_ROOT=/home/rurodrig/anaconda3
CONDA_SHLVL=2
CURL_CA_BUNDLE=<not set>
FPATH=/usr/share/lmod/lmod/init/ksh_funcs
LD_LIBRARY_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
gcc-13.2.0/libfabric-1.21.0-sqii3ip6c5hiwuzezib5dow4mfylfk4y/lib64:/ss
oft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/gcc
-13.2.0/libfabric-1.21.0-sqii3ip6c5hiwuzezib5dow4mfylfk4y/lib:/ssoft/s
pack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/gcc-13.2
.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/lib:/ssoft/spack/pin
ot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/
cuda-12.4.1-hevc6ydw56jqswhgpyq5sy7a3466fsfv/lib64:/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/gcc
-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/lib64:/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/gcc
-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/lib
LMOD_PACKAGE_PATH=/etc/lmod
MANPATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/share/man:/s
soft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_
v3/gcc-11.4.1/gcc-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/share/man::
MODULEPATH=/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/share/spack/lmod/kuma-h100/linux-
rhel9-x86_64/openmpi/5.0.3-xwxrcsp/gcc/13.2.0:/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/share/spack/lmod/kuma-h100/linux-rhel9-x86_64/
gcc/13.2.0:/ssoft/spack/kuma-h100_stable/share/spack/lmod/kuma-h100/li
nux-rhel9-x86_64/Core
PATH=/home/rurodrig/anaconda3/bin:/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/gcc-13.2.0/openmpi-
5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/bin:/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/cud
a-12.4.1-hevc6ydw56jqswhgpyq5sy7a3466fsfv/bin:/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/gcc
-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/bin:/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/cma
ke-3.27.9-xu5ws5kqxy5ofkqxwjqko77ik76it3o6/bin:/home/rurodrig/cmds:/ho
me/rurodrig/.vscode-server/cli/servers/Stable-6f17636121051a53c88d3e60
5c491d22af2ba755/server/bin/remote-
cli:/home/rurodrig/anaconda3/envs/lammps-metatomic/bin:/home/rurodrig/
anaconda3/condabin:/home/rurodrig/.local/bin:/home/rurodrig/bin:/usr/l
ib64/ccache:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/pup
petlabs/bin:/home/rurodrig/.vscode-server/extensions/ms-python.debugpy
-2025.10.0-linux-x64/bundled/scripts/noConfigScripts:/home/rurodrig/.v
scode-server/data/User/globalStorage/github.copilot-chat/debugCommand
PKG_CONFIG_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/lib/pkgconfi
g
REQUESTS_CA_BUNDLE=<not set>
SPACK_SYSTEM_CONFIG_PATH=/ssoft/spack/kuma-h100_stable/var/spack/environments/kuma-h100
SSL_CERT_FILE=/etc/pki/ca-trust/extracted/pem/tls-ca-bundle.pem
__LMOD_REF_COUNT_ACLOCAL_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_6
4_v3/gcc-11.4.1/cmake-3.27.9-xu5ws5kqxy5ofkqxwjqko77ik76it3o6/share/ac
local:1
__LMOD_REF_COUNT_CMAKE_PREFIX_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc:1;/ssoft/spa
ck/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-1
1.4.1/cuda-12.4.1-hevc6ydw56jqswhgpyq5sy7a3466fsfv:1;/ssoft/spack/pino
t-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/g
cc-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj:1;/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4.1/cma
ke-3.27.9-xu5ws5kqxy5ofkqxwjqko77ik76it3o6:1
__LMOD_REF_COUNT_LD_LIBRARY_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
gcc-13.2.0/libfabric-1.21.0-sqii3ip6c5hiwuzezib5dow4mfylfk4y/lib64:1;/
ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/g
cc-13.2.0/libfabric-1.21.0-sqii3ip6c5hiwuzezib5dow4mfylfk4y/lib:1;/sso
ft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/gcc-
13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/lib:1;/ssoft/spa
ck/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-1
1.4.1/cuda-12.4.1-hevc6ydw56jqswhgpyq5sy7a3466fsfv/lib64:1;/ssoft/spac
k/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11
.4.1/gcc-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/lib64:1;/ssoft/spack/
pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4
.1/gcc-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/lib:1
__LMOD_REF_COUNT_MANPATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/share/man:1;
/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_6
4_v3/gcc-11.4.1/gcc-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/share/man:
1
__LMOD_REF_COUNT_MODULEPATH=/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/share/spack/lmod/kuma-h100/linux-
rhel9-x86_64/openmpi/5.0.3-xwxrcsp/gcc/13.2.0:1;/ssoft/spack/pinot-
noir/kuma-h100/v2/spack/share/spack/lmod/kuma-h100/linux-rhel9-x86_64/
gcc/13.2.0:1;/ssoft/spack/kuma-h100_stable/share/spack/lmod/kuma-h100/
linux-rhel9-x86_64/Core:1
__LMOD_REF_COUNT_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/bin:1;/ssoft
/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/g
cc-11.4.1/cuda-12.4.1-hevc6ydw56jqswhgpyq5sy7a3466fsfv/bin:1;/ssoft/sp
ack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-
11.4.1/gcc-13.2.0-hv54pwqhzsv2gfljpsyffs4xo2u7swfj/bin:1;/ssoft/spack/
pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-x86_64_v3/gcc-11.4
.1/cmake-3.27.9-xu5ws5kqxy5ofkqxwjqko77ik76it3o6/bin:1;/home/rurodrig/
cmds:2;/home/rurodrig/.vscode-server/cli/servers/Stable-6f17636121051a
53c88d3e605c491d22af2ba755/server/bin/remote-
cli:1;/home/rurodrig/anaconda3/envs/lammps-metatomic/bin:1;/home/rurod
rig/anaconda3/condabin:1;/home/rurodrig/.local/bin:1;/home/rurodrig/bi
n:1;/usr/lib64/ccache:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;
/usr/sbin:1;/opt/puppetlabs/bin:1;/home/rurodrig/.vscode-
server/extensions/ms-python.debugpy-2025.10.0-linux-x64/bundled/script
s/noConfigScripts:1;/home/rurodrig/.vscode-
server/data/User/globalStorage/github.copilot-chat/debugCommand:1
__LMOD_REF_COUNT_PKG_CONFIG_PATH=/ssoft/spack/pinot-noir/kuma-h100/v2/spack/opt/spack/linux-rhel9-zen4/
gcc-13.2.0/openmpi-5.0.3-xwxrcsp7dv7akb6iskilfb7jxtxz5vhc/lib/pkgconfi
g:1
active environment : lammps-metatomic
active env location : /home/rurodrig/anaconda3/envs/lammps-metatomic
shell level : 2
user config file : /home/rurodrig/.condarc
populated config files : /home/rurodrig/.condarc
conda version : 4.12.0
conda-build version : 3.18.11
python version : 3.8.3.final.0
virtual packages : __cuda=12.4=0
__linux=5.14.0=0
__glibc=2.34=0
__unix=0=0
__archspec=1=x86_64
base environment : /home/rurodrig/anaconda3 (writable)
conda av data dir : /home/rurodrig/anaconda3/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/metatensor/linux-64
https://conda.anaconda.org/metatensor/noarch
https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /home/rurodrig/anaconda3/pkgs
/home/rurodrig/.conda/pkgs
envs directories : /home/rurodrig/anaconda3/envs
/home/rurodrig/.conda/envs
platform : linux-64
user-agent : conda/4.12.0 requests/2.24.0 CPython/3.8.3 Linux/5.14.0-427.42.1.el9_4.x86_64 rhel/9.4 glibc/2.34
UID:GID : 278790:10613
netrc file : None
offline mode : False
An unexpected error has occurred. Conda has prepared the above report.`
Any suggestion to fix the installation?
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