From 17f9ec1b67758f73a3265cfd5560394ddef96fa7 Mon Sep 17 00:00:00 2001 From: pjhartzell Date: Fri, 31 Mar 2023 08:18:11 -0400 Subject: [PATCH 01/15] initial commit --- datasets/io-land-cover/dataset.yaml | 2 +- datasets/sentinel-5p/README.md | 2 +- .../sentinel-5p/collection/description.md | 19 + datasets/sentinel-5p/collection/template.json | 237 + datasets/sentinel-5p/dataset.yaml | 40 +- datasets/sentinel-5p/s5/__init__.py | 0 datasets/sentinel-5p/sentinel-5p-l2.json | 131 - datasets/sentinel-5p/sentinel_5p.py | 134 + .../summaries/2022-09-08-full.json | 8914 +++++++++++++++++ .../sentinel-5p/summaries/2022-09-08.json | 367 + .../{ => summaries}/summarize-wf.yaml | 0 11 files changed, 9702 insertions(+), 144 deletions(-) create mode 100644 datasets/sentinel-5p/collection/description.md create mode 100755 datasets/sentinel-5p/collection/template.json delete mode 100644 datasets/sentinel-5p/s5/__init__.py delete mode 100755 datasets/sentinel-5p/sentinel-5p-l2.json create mode 100644 datasets/sentinel-5p/sentinel_5p.py create mode 100644 datasets/sentinel-5p/summaries/2022-09-08-full.json create mode 100644 datasets/sentinel-5p/summaries/2022-09-08.json rename datasets/sentinel-5p/{ => summaries}/summarize-wf.yaml (100%) diff --git a/datasets/io-land-cover/dataset.yaml b/datasets/io-land-cover/dataset.yaml index b7f59ca3..1bdde809 100644 --- a/datasets/io-land-cover/dataset.yaml +++ b/datasets/io-land-cover/dataset.yaml @@ -2,7 +2,7 @@ id: io_lulc image: ${{ args.registry }}/pctasks-task-base:latest args: -- registry + - registry code: src: ${{ local.path(./io_lulc.py) }} diff --git a/datasets/sentinel-5p/README.md b/datasets/sentinel-5p/README.md index 1bfda52a..0571f3e1 100644 --- a/datasets/sentinel-5p/README.md +++ b/datasets/sentinel-5p/README.md @@ -1 +1 @@ -# Work in progress - in a broken state \ No newline at end of file +# Sentinel-5 Precursor diff --git a/datasets/sentinel-5p/collection/description.md b/datasets/sentinel-5p/collection/description.md new file mode 100644 index 00000000..829dd2ca --- /dev/null +++ b/datasets/sentinel-5p/collection/description.md @@ -0,0 +1,19 @@ +The Copernicus [Sentinel-5 Precursor](https://sentinels.copernicus.eu/web/sentinel/missions/sentinel-5p) mission provides high spatio-temporal resolution measurements of the Earth's atmosphere. The mission consists of one satellite carrying the [TROPOspheric Monitoring Instrument](http://www.tropomi.eu/) (TROPOMI). The satellite flies in loose formation with NASA's [Suomi NPP](https://www.nasa.gov/mission_pages/NPP/main/index.html) spacecraft, allowing utilization of co-located cloud mask data provided by the [Visible Infrared Imaging Radiometer Suite](https://www.nesdis.noaa.gov/current-satellite-missions/currently-flying/joint-polar-satellite-system/visible-infrared-imaging) (VIIRS) instrument onboard Suomi NPP during processing of the TROPOMI methane product. + +The Sentinel-5 Precursor mission aims to reduce the global atmospheric data gap between the retired [ENVISAT](https://earth.esa.int/eogateway/missions/envisat) and [AURA](https://www.nasa.gov/mission_pages/aura/main/index.html) missions and the future [Sentinel-5](https://sentinels.copernicus.eu/web/sentinel/missions/sentinel-5) mission. Sentinel-5 Precursor [Level 2 data](http://www.tropomi.eu/data-products/level-2-products) provide total columns of ozone, sulfur dioxide, nitrogen dioxide, carbon monoxide and formaldehyde, tropospheric columns of ozone, vertical profiles of ozone and cloud & aerosol information. These measurements are used for improving air quality forecasts and monitoring the concentrations of atmospheric constituents. + +This STAC Collection provides Sentinel-5 Precursor Level 2 data, in NetCDF format, since April 2018 for the following products: + +* [`L2__AER_AI`](http://www.tropomi.eu/data-products/uv-aerosol-index): UV aerosol index +* [`L2__AER_LH`](http://www.tropomi.eu/data-products/aerosol-layer-height): Aerosol layer height +* [`L2__CH4___`](http://www.tropomi.eu/data-products/methane): Methane (CH4) +* [`L2__CLOUD_`](http://www.tropomi.eu/data-products/cloud): Cloud +* [`L2__CO____`](http://www.tropomi.eu/data-products/carbon-monoxide): Carbon monoxide (CO) +* [`L2__HCHO__`](http://www.tropomi.eu/data-products/formaldehyde): Formaldehyde (HCHO) +* [`L2__NO2___`](http://www.tropomi.eu/data-products/nitrogen-dioxide): Nitrogen dioxide (NO2) +* [`L2__O3____`](http://www.tropomi.eu/data-products/total-ozone-column): Ozone (O3) +* [`L2__O3_TCL`](http://www.tropomi.eu/data-products/tropospheric-ozone-column): Tropospheric ozone +* [`L2__SO2___`](http://www.tropomi.eu/data-products/sulphur-dioxide): Sulfur dioxide (SO2) +* [`L2__NP_BD3`](http://www.tropomi.eu/data-products/auxiliary): Cloud from the Suomi NPP mission, band 3 +* [`L2__NP_BD6`](http://www.tropomi.eu/data-products/auxiliary): Cloud from the Suomi NPP mission, band 6 +* [`L2__NP_BD7`](http://www.tropomi.eu/data-products/auxiliary): Cloud from the Suomi NPP mission, band 7 diff --git a/datasets/sentinel-5p/collection/template.json b/datasets/sentinel-5p/collection/template.json new file mode 100755 index 00000000..06c7585d --- /dev/null +++ b/datasets/sentinel-5p/collection/template.json @@ -0,0 +1,237 @@ +{ + "stac_version": "1.0.0", + "type": "Collection", + "id": "sentinel-5p-l2-netcdf", + "title": "Sentinel-5P Level-2", + "description": "{{ collection.description }}", + "license": "proprietary", + "links": [ + { + "rel": "license", + "href": "https://sentinel.esa.int/documents/247904/690755/Sentinel_Data_Legal_Notice", + "type": "application/pdf", + "title": "Sentinel Data License" + }, + { + "rel": "about", + "href": "https://sentinel.esa.int/web/sentinel/missions/sentinel-5p", + "type": "text/html", + "title": "Sentinel-5 Precursor Mission" + } + ], + "stac_extensions": [ + "https://stac-extensions.github.io/sat/v1.0.0/schema.json", + "https://stac-extensions.github.io/table/v1.2.0/schema.json" + ], + "keywords": [ + "ESA", + "Copernicus", + "Sentinel", + "Air Quality", + "Climate Change", + "Forecasting" + ], + "msft:short_description": "Sentinel-5P Level 2 atmospheric monitoring products in NetCDF format", + "msft:storage_account": "sentinel5euwest", + "msft:container": "sentinel-5p", + "msft:region": "westeurope", + "providers": [ + { + "name": "ESA", + "roles": [ + "producer", + "processor", + "licensor" + ], + "url": "https://earth.esa.int/web/guest/home" + }, + { + "name": "Microsoft", + "roles": [ + "host" + ], + "url": "https://planetarycomputer.microsoft.com" + } + ], + "assets": { + "thumbnail": { + "title": "Sentinel-5P Level-2 NetCDF", + "href": "https://ai4edatasetspublicassets.blob.core.windows.net/assets/pc_thumbnails/sentinel-5p-l2-netcdf-thumb.png", + "media_type": "image/png" + }, + "geoparquet-items": { + "href": "abfs://items/io-biodiversity.parquet", + "title": "GeoParquet STAC items", + "description": "Snapshot of the collection's STAC items exported to GeoParquet format.", + "type": "application/x-parquet", + "roles": [ + "stac-items" + ], + "table:storage_options": { + "account_name": "pcstacitems" + }, + "msft:partition_info": { + "is_partitioned": true, + "partition_frequency": "MS" + } + } + }, + "summaries": { + "constellation": [ + "Sentinel-5P" + ], + "platform": [ + "Sentinel 5 Precursor" + ], + "instruments": [ + "TROPOMI" + ], + "sat:platform_international_designator": [ + "2017-064A" + ], + "s5p:collection_identifier": [ + "01", + "02", + "03" + ], + "s5p:processing_mode": [ + "NRTI", + "OFFL", + "RPRO" + ], + "s5p:product_type": [ + "L2__AER_AI", + "L2__AER_LH", + "L2__CH4___", + "L2__CLOUD_", + "L2__CO____", + "L2__HCHO__", + "L2__NO2___", + "L2__NP_BD3", + "L2__NP_BD6", + "L2__NP_BD7", + "L2__O3_TCL", + "L2__O3____", + "L2__SO2___" + ], + "s5p:spatial_resolution": [ + "5.5x3.5km", + "5.5x7.0km", + "7.0x3.5km", + "7.0x7.0km" + ] + }, + "extent": { + "spatial": { + "bbox": [ + [ + -180, + -90, + 180, + 90 + ] + ] + }, + "temporal": { + "interval": [ + [ + "2018-04-30T00:18:50Z", + null + ] + ] + } + }, + "item_assets": { + "aer_ai": { + "title": "TROPOMI/S5P L2 Ultraviolet Aerosol Index", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + }, + "aer_lh": { + "title": "TROPOMI/S5P L2 Aerosol Layer Height", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + }, + "ch4": { + "title": "TROPOMI/S5P L2 Methane Total Column", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + }, + "cloud": { + "title": "TROPOMI/S5P L2 Cloud Fraction, Albedo, and Top Pressure", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + }, + "co": { + "title": "TROPOMI/S5P L2 Carbon Monoxide Total Column", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + }, + "hcho": { + "title": "TROPOMI/S5P L2 Formaldehyde Total Column", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + }, + "no2": { + "title": "TROPOMI/S5P L2 Nitrogen Dioxide Total Column", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + }, + "o3": { + "title": "TROPOMI/S5P L2 Ozone Total Column", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + }, + "o3_tcl": { + "title": "TROPOMI/S5P L2 Ozone Tropospheric Column", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + }, + "so2": { + "title": "TROPOMI/S5P L2 Sulphur Dioxide Total Column", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + }, + "np_bd3": { + "title": "TROPOMI/S5P VIIRS/NPP Band 3 Cloud Mask", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + }, + "np_bd6": { + "title": "TROPOMI/S5P VIIRS/NPP Band 6 Cloud Mask", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + }, + "np_bd7": { + "title": "TROPOMI/S5P VIIRS/NPP Band 7 Cloud Maskt", + "type": "application/x-netcdf", + "roles": [ + "data" + ] + } + } +} \ No newline at end of file diff --git a/datasets/sentinel-5p/dataset.yaml b/datasets/sentinel-5p/dataset.yaml index 8e9e9cd6..a7a9e5ee 100644 --- a/datasets/sentinel-5p/dataset.yaml +++ b/datasets/sentinel-5p/dataset.yaml @@ -1,12 +1,30 @@ -id: sentinel-1-grd +id: sentinel_5p +image: ${{ args.registry }}/pctasks-task-base:latest + +args: + - registry + +code: + src: ${{ local.path(./sentinel_5p.py) }} + +environment: + AZURE_TENANT_ID: ${{ secrets.task-tenant-id }} + AZURE_CLIENT_ID: ${{ secrets.task-client-id }} + AZURE_CLIENT_SECRET: ${{ secrets.task-client-secret }} + collections: - id: sentinel-1-grd - containers: - assets: sentinel1euwest/s1-grd - stac: sentinel1euwest/s1-grd-stac - etl-data: sentinel1euwest/s1-grd-etl-info -triggers: - storage: - account: sentinel1euwest - container: s1-grd-stac - filter: "*.json" + - id: sentinel-5p-l2-netcdf + template: ${{ local.path(./collection) }} + class: sentinel_5p:Sentinel5pNetCDFCollection + asset_storage: + - uri: blob://sentinel5euwest/sentinel-5p-stac/TROPOMI/ + token: ${{ pc.get_token(sentinel5euwest, sentinel-5p-stac) }} + chunks: + options: + name_starts_with: L2__AER_AI/ + extensions: [.json] + chunk_length: 100 + limit: 200 + + chunk_storage: + uri: blob://sentinel5euwest/sentinel-5p-etl-data/pctasks-chunks/ diff --git a/datasets/sentinel-5p/s5/__init__.py b/datasets/sentinel-5p/s5/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/datasets/sentinel-5p/sentinel-5p-l2.json b/datasets/sentinel-5p/sentinel-5p-l2.json deleted file mode 100755 index 41adddc8..00000000 --- a/datasets/sentinel-5p/sentinel-5p-l2.json +++ /dev/null @@ -1,131 +0,0 @@ -{ - "type": "Collection", - "id": "sentinel-5p-l2", - "stac_version": "1.0.0", - "description": "The Copernicus [Sentinel-5 Precursor mission](https://sentinels.copernicus.eu/web/sentinel/missions/sentinel-5p) is dedicated to monitoring our atmosphere and consists of one satellite carrying the TROPOspheric Monitoring Instrument (TROPOMI). Sentinel-5 Precursor mission aims to fill in the global atmospheric data gap between the retired ENVISAT and AURA missions and the future Sentinel-5 mission. The main objective of TROPOMI is to provide daily global observations of key atmospheric constituents related to air quality, ozone layer and climate change monitoring and forecasting. Level 2 data provide total columns of ozone, sulfur dioxide, nitrogen dioxide, carbon monoxide and formaldehyde, tropospheric columns of ozone, vertical profiles of ozone and cloud & aerosol information. Level 2 data are available since April 2018. These measurements are used for improving air quality forecasts as well as for monitoring the concentrations of atmospheric constituents.", - "links": [ - { - "rel": "license", - "href": "https://sentinel.esa.int/documents/247904/690755/Sentinel_Data_Legal_Notice" - }, - { - "rel": "root", - "href": "./sentinel-5p-l2.json", - "type": "application/json" - }, - { - "rel": "self", - "href": "https://sentinel5euwest.blob.core.windows.net/sentinel-5p-stac/sentinel-5p-l2.json", - "type": "application/json" - } - ], - "stac_extensions": [ - "https://stac-extensions.github.io/sat/v1.0.0/schema.json" - ], - "extent": { - "spatial": { - "bbox": [ - [ - -180, - -85, - 180, - 85 - ] - ] - }, - "temporal": { - "interval": [ - [ - "2018-04-30T00:18:50Z", - null - ] - ] - } - }, - "license": "proprietary", - "keywords": [ - "eu", - "esa", - "copernicus", - "sentinel", - "systematic", - "aerosols", - "air quality", - "climate change", - "ozone", - "forecasting", - "N02" - ], - "providers": [ - { - "name": "ESA", - "roles": [ - "producer", - "processor", - "licensor" - ], - "url": "https://earth.esa.int/web/guest/home" - }, - { - "name": "Microsoft", - "roles": [ - "host", - "processor" - ], - "url": "https://planetarycomputer.microsoft.com" - } - ], - "msft:container": "sentinel-5p", - "msft:storage_account": "sentinel5euwest", - "msft:short_description": "The Copernicus [Sentinel-5 Precursor mission](https://sentinels.copernicus.eu/web/sentinel/missions/sentinel-5p) is dedicated to monitoring our atmosphere and consists of one satellite carrying the TROPOspheric Monitoring Instrument (TROPOMI). Level 2 data provide total columns of ozone, sulfur dioxide, nitrogen dioxide, carbon monoxide and formaldehyde, tropospheric columns of ozone, vertical profiles of ozone and cloud & aerosol information.", - "summaries": { - "constellation": [ - "Sentinel-5P" - ], - "platform" : [ - "Sentinel 5 Precursor" - ], - "instruments" : [ - "TROPOMI" - ], - "sat:platform_international_designator": [ - "2017-064A" - ], - "sat:absolute_orbit" : { - "minimum": 1, - "maximum": 2147483647 - }, - "s5p:processing_mode": [ - "NRTI", - "OFFL", - "RPRO" - ], - "s5p:product_type": [ - "L2__AER_AI", - "L2__AER_LH", - "L2__CH4___", - "L2__CLOUD_", - "L2__CO____", - "L2__HCHO__", - "L2__NO2___", - "L2__NP_BD3", - "L2__NP_BD6", - "L2__NP_BD7", - "L2__O3____", - "L2__O3_TCL", - "L2__SO2___" - ], - "s5p:spatial_resolution": [ - "5.5x3.5 km2", - "5.5x7 km2", - "7x3.5 km2", - "7x7 km2" - ], - "s5p:shape": { - "dimensions": "scanline x ground_pixel", - "scanline": "The dimension that indicates the flight direction", - "ground_pixel": "The dimension perpendicular to the flight direction" - } - }, - "title": "Sentinel-5P Level-2" -} diff --git a/datasets/sentinel-5p/sentinel_5p.py b/datasets/sentinel-5p/sentinel_5p.py new file mode 100644 index 00000000..ed049bae --- /dev/null +++ b/datasets/sentinel-5p/sentinel_5p.py @@ -0,0 +1,134 @@ +import logging +import re +from pathlib import Path +from typing import List, Union + +import pystac + +from pctasks.core.models.task import WaitTaskResult +from pctasks.core.storage import StorageFactory +from pctasks.dataset.collection import Collection + +FILENAME_EXPR = re.compile( + r"S5P_(?P[A-Z]{4})_L(?P[0-9]{1})_(?P.{7})_" + r"(?P[0-9,A-Z]{15})_(?P[0-9,A-Z]{15})_" + r"(?P[0-9]{5})_(?P[0-9]{2})_(?P[0-9]{6})_" + r"(?P[0-9,A-Z]{15})" +) + +ABOUT_LINKS = { + "aer_ai": "http://www.tropomi.eu/data-products/uv-aerosol-index", + "aer_lh": "http://www.tropomi.eu/data-products/aerosol-layer-height", + "ch4": "http://www.tropomi.eu/data-products/methane", + "cloud": "http://www.tropomi.eu/data-products/cloud", + "co": "http://www.tropomi.eu/data-products/carbon-monoxide", + "hcho": "http://www.tropomi.eu/data-products/formaldehyde", + "no2": "http://www.tropomi.eu/data-products/nitrogen-dioxide", + "o3": "http://www.tropomi.eu/data-products/total-ozone-column", + "o3_tcl": "http://www.tropomi.eu/data-products/tropospheric-ozone-column", + "so2": "http://www.tropomi.eu/data-products/sulphur-dioxide", + "np_bd3": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa + "np_bd6": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa + "np_bd7": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa +} + +ASSET_TITLES = { + "aer_ai": "TROPOMI/S5P L2 Ultraviolet Aerosol Index", + "aer_lh": "TROPOMI/S5P L2 Aerosol Layer Height", + "ch4": "TROPOMI/S5P L2 Methane Total Column", + "cloud": "TROPOMI/S5P L2 Cloud Fraction, Albedo, and Top Pressure", + "co": "TROPOMI/S5P L2 Carbon Monoxide Total Column", + "hcho": "TROPOMI/S5P L2 Formaldehyde Total Column", + "no2": "TROPOMI/S5P L2 Nitrogen Dioxide Total Column", + "o3": "TROPOMI/S5P L2 Ozone Total Column", + "o3_tcl": "TROPOMI/S5P L2 Ozone Tropospheric Column", + "so2": "TROPOMI/S5P L2 Sulphur Dioxide Total Column", + "np_bd3": "TROPOMI/S5P VIIRS/NPP Band 3 Cloud Mask", + "np_bd6": "TROPOMI/S5P VIIRS/NPP Band 6 Cloud Mask", + "np_bd7": "TROPOMI/S5P VIIRS/NPP Band 7 Cloud Mask", +} + +handler = logging.StreamHandler() +handler.setFormatter(logging.Formatter("[%(levelname)s]:%(asctime)s: %(message)s")) +handler.setLevel(logging.INFO) +logger = logging.getLogger(__name__) +logger.addHandler(handler) +logger.setLevel(logging.INFO) + + +class Sentinel5pNetCDFCollection(Collection): + @classmethod + def create_item( + cls, asset_uri: str, storage_factory: StorageFactory + ) -> Union[List[pystac.Item], WaitTaskResult]: + + storage, json_path = storage_factory.get_storage_for_file(asset_uri) + item_dict = storage.read_json(json_path) + + netcdf_filename = item_dict["assets"]["data"]["href"] + match = FILENAME_EXPR.match(Path(netcdf_filename).stem) + if not match: + raise ValueError(f"Could not parse filename {Path(json_path).stem}") + product = match.groupdict()["product"].strip("_").lower() + collection_identifier = match.groupdict()["collection"] + + # ---- PROPERTIES ---- + properties = item_dict.pop("properties") + + # providers should be supplied in the collection, not the item + properties.pop("providers", None) + + # add the custom product properties to a single property object + product_custom_fields = {} + keys = [k for k in properties.keys() if str(k).startswith(product)] + if keys: + for key in keys: + product_custom_fields[ + str(key).replace(f"{product}:", "") + ] = properties.pop(key) + properties[f"s5p:{product}"] = product_custom_fields + + # add sentinel-5p collection_identifier + properties["s5p:collection_identifier"] = collection_identifier + + # clean up spatial_resolution + resolution = properties["s5p:spatial_resolution"] + resolution = resolution.strip().strip("km2").strip("km").strip() + parts = resolution.split("x") + assert len(parts) == 2 + resolution = f"{float(parts[0])}x{float(parts[1])}km" + properties["s5p:spatial_resolution"] = resolution + + item_dict["properties"] = properties + + # ---- ASSETS ---- + asset = item_dict["assets"].pop("data") + + # the supplied asset description is too brief to be a description and + # too inconsistent to use as a title; use a custom title instead + asset.pop("description") + asset["title"] = ASSET_TITLES[product] + + item_dict["assets"][product] = asset + + # ---- LINKS ---- + links = item_dict.pop("links") + + # license is the same for all items; include on the collection, not the item + for link in links: + if link["rel"] == "license": + links.remove(link) + + # add a unique link to the product landing page (or user manual if no landing page) + about_href = ABOUT_LINKS.get(product) + links.append( + { + "rel": "about", + "href": about_href, + "type": "text/html", + } + ) + + item_dict["links"] = links + + return [pystac.Item.from_dict(item_dict)] diff --git a/datasets/sentinel-5p/summaries/2022-09-08-full.json b/datasets/sentinel-5p/summaries/2022-09-08-full.json new file mode 100644 index 00000000..e6972e2e --- /dev/null +++ b/datasets/sentinel-5p/summaries/2022-09-08-full.json @@ -0,0 +1,8914 @@ +{ + "count": 1001324, + "keys": { + "type": { + "type": "distinct", + "count_with": 1001324, + "count_without": 0, + "values": [ + { + "type": "string", + "count": 1001324, + "value": "Feature" + } + ] + }, + "stac_version": { + "type": "distinct", + "count_with": 1001324, + "count_without": 0, + "values": [ + { + "type": "string", + "count": 1001324, + "value": "1.0.0" + } + ] + }, + "id": { + "type": "mixed-value", + "count_with": 1001324, + "count_without": 0, + "data_types": [ + "string" + ], + "sample": [ + { + "type": "string", + "count": 1, + "value": "S5P_L2_O3_TCL_20210501T112140_20210507T120750_18431" + }, + { + "type": "string", + "count": 1, + "value": "S5P_L2_O3_TCL_20210502T110242_20210508T114852_18445" + }, + { + "type": "string", + "count": 1, + "value": "S5P_L2_O3_TCL_20210503T104346_20210509T131125_18459" + }, + { + "type": "string", + "count": 1, + "value": "S5P_L2_O3_TCL_20210504T120618_20210510T125227_18474" + }, + { + "type": "string", + "count": 1, + "value": "S5P_L2_O3_TCL_20210505T114721_20210511T123329_18488" + } + ] + }, + "properties": { + "type": "object", + "count_with": 1001324, + "count_without": 0, + "summary": { + "count": 1001324, + "keys": { + "sat:platform_international_designator": { + "type": "distinct", + "count_with": 1001324, + "count_without": 0, + "values": [ + { + "type": "string", + "count": 1001324, + "value": "2017-064A" + } + ] + }, + "instruments": { + "type": "distinct", + "count_with": 1001324, + "count_without": 0, + 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a/datasets/sentinel-5p/collection/description.md b/datasets/sentinel-5p/collection/description.md index 829dd2ca..fa391880 100644 --- a/datasets/sentinel-5p/collection/description.md +++ b/datasets/sentinel-5p/collection/description.md @@ -4,16 +4,16 @@ The Sentinel-5 Precursor mission aims to reduce the global atmospheric data gap This STAC Collection provides Sentinel-5 Precursor Level 2 data, in NetCDF format, since April 2018 for the following products: -* [`L2__AER_AI`](http://www.tropomi.eu/data-products/uv-aerosol-index): UV aerosol index +* [`L2__AER_AI`](http://www.tropomi.eu/data-products/uv-aerosol-index): Ultraviolet aerosol index * [`L2__AER_LH`](http://www.tropomi.eu/data-products/aerosol-layer-height): Aerosol layer height -* [`L2__CH4___`](http://www.tropomi.eu/data-products/methane): Methane (CH4) -* [`L2__CLOUD_`](http://www.tropomi.eu/data-products/cloud): Cloud -* [`L2__CO____`](http://www.tropomi.eu/data-products/carbon-monoxide): Carbon monoxide (CO) -* [`L2__HCHO__`](http://www.tropomi.eu/data-products/formaldehyde): Formaldehyde (HCHO) -* [`L2__NO2___`](http://www.tropomi.eu/data-products/nitrogen-dioxide): Nitrogen dioxide (NO2) -* [`L2__O3____`](http://www.tropomi.eu/data-products/total-ozone-column): Ozone (O3) -* [`L2__O3_TCL`](http://www.tropomi.eu/data-products/tropospheric-ozone-column): Tropospheric ozone -* [`L2__SO2___`](http://www.tropomi.eu/data-products/sulphur-dioxide): Sulfur dioxide (SO2) +* [`L2__CH4___`](http://www.tropomi.eu/data-products/methane): Methane (CH4) total column +* [`L2__CLOUD_`](http://www.tropomi.eu/data-products/cloud): Cloud fraction, albedo, and top pressure +* [`L2__CO____`](http://www.tropomi.eu/data-products/carbon-monoxide): Carbon monoxide (CO) total column +* [`L2__HCHO__`](http://www.tropomi.eu/data-products/formaldehyde): Formaldehyde (HCHO) total column +* [`L2__NO2___`](http://www.tropomi.eu/data-products/nitrogen-dioxide): Nitrogen dioxide (NO2) total column +* [`L2__O3____`](http://www.tropomi.eu/data-products/total-ozone-column): Ozone (O3) total column +* [`L2__O3_TCL`](http://www.tropomi.eu/data-products/tropospheric-ozone-column): Ozone (O3) tropospheric column +* [`L2__SO2___`](http://www.tropomi.eu/data-products/sulphur-dioxide): Sulfur dioxide (SO2) total column * [`L2__NP_BD3`](http://www.tropomi.eu/data-products/auxiliary): Cloud from the Suomi NPP mission, band 3 * [`L2__NP_BD6`](http://www.tropomi.eu/data-products/auxiliary): Cloud from the Suomi NPP mission, band 6 * [`L2__NP_BD7`](http://www.tropomi.eu/data-products/auxiliary): Cloud from the Suomi NPP mission, band 7 diff --git a/datasets/sentinel-5p/dataset.yaml b/datasets/sentinel-5p/dataset.yaml index a7a9e5ee..799be277 100644 --- a/datasets/sentinel-5p/dataset.yaml +++ b/datasets/sentinel-5p/dataset.yaml @@ -21,10 +21,5 @@ collections: token: ${{ pc.get_token(sentinel5euwest, sentinel-5p-stac) }} chunks: options: - name_starts_with: L2__AER_AI/ extensions: [.json] - chunk_length: 100 - limit: 200 - - chunk_storage: - uri: blob://sentinel5euwest/sentinel-5p-etl-data/pctasks-chunks/ + chunk_length: 5000 # Larger? There are 1.33 million blobs in storage From b98a4fa5e4d99dd6adc90e825994370654279c18 Mon Sep 17 00:00:00 2001 From: pjhartzell Date: Thu, 6 Apr 2023 05:50:37 -0400 Subject: [PATCH 03/15] fix: restore accidentally deleted chunk_storage --- datasets/sentinel-5p/dataset.yaml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/datasets/sentinel-5p/dataset.yaml b/datasets/sentinel-5p/dataset.yaml index 799be277..73033ea3 100644 --- a/datasets/sentinel-5p/dataset.yaml +++ b/datasets/sentinel-5p/dataset.yaml @@ -23,3 +23,5 @@ collections: options: extensions: [.json] chunk_length: 5000 # Larger? There are 1.33 million blobs in storage + chunk_storage: + uri: blob://sentinel5euwest/sentinel-5p-etl-data/pctasks-chunks/ From 27079fa6c33dff0f83452c326c9f71536c8b66b2 Mon Sep 17 00:00:00 2001 From: pjhartzell Date: Thu, 6 Apr 2023 09:37:12 -0400 Subject: [PATCH 04/15] fix: template fixups --- datasets/sentinel-5p/collection/template.json | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/datasets/sentinel-5p/collection/template.json b/datasets/sentinel-5p/collection/template.json index 06c7585d..9869b608 100755 --- a/datasets/sentinel-5p/collection/template.json +++ b/datasets/sentinel-5p/collection/template.json @@ -21,7 +21,8 @@ ], "stac_extensions": [ "https://stac-extensions.github.io/sat/v1.0.0/schema.json", - "https://stac-extensions.github.io/table/v1.2.0/schema.json" + "https://stac-extensions.github.io/table/v1.2.0/schema.json", + "https://stac-extensions.github.io/item-assets/v1.0.0/schema.json" ], "keywords": [ "ESA", @@ -60,7 +61,7 @@ "media_type": "image/png" }, "geoparquet-items": { - "href": "abfs://items/io-biodiversity.parquet", + "href": "abfs://items/sentinel-5p-l2-netcdf.parquet", "title": "GeoParquet STAC items", "description": "Snapshot of the collection's STAC items exported to GeoParquet format.", "type": "application/x-parquet", From be51999468cd723f7eb4f686cfba74abb96f5684 Mon Sep 17 00:00:00 2001 From: pjhartzell Date: Thu, 6 Apr 2023 10:39:37 -0400 Subject: [PATCH 05/15] fix: remove old summary files --- .../summaries/2022-09-08-full.json | 8914 ----------------- .../sentinel-5p/summaries/2022-09-08.json | 367 - .../sentinel-5p/summaries/summarize-wf.yaml | 71 - 3 files changed, 9352 deletions(-) delete mode 100644 datasets/sentinel-5p/summaries/2022-09-08-full.json delete mode 100644 datasets/sentinel-5p/summaries/2022-09-08.json delete mode 100644 datasets/sentinel-5p/summaries/summarize-wf.yaml diff --git a/datasets/sentinel-5p/summaries/2022-09-08-full.json b/datasets/sentinel-5p/summaries/2022-09-08-full.json deleted file mode 100644 index e6972e2e..00000000 --- a/datasets/sentinel-5p/summaries/2022-09-08-full.json +++ /dev/null @@ -1,8914 +0,0 @@ -{ - 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"type": "distinct", - "values": [ - { - "keys": [ - "bbox", - "properties", - "stac_extensions", - "id", - "stac_version", - "type", - "links", - "assets", - "geometry" - ], - "count_with": 1003816 - } - ] - } -} \ No newline at end of file diff --git a/datasets/sentinel-5p/summaries/summarize-wf.yaml b/datasets/sentinel-5p/summaries/summarize-wf.yaml deleted file mode 100644 index 5d28333d..00000000 --- a/datasets/sentinel-5p/summaries/summarize-wf.yaml +++ /dev/null @@ -1,71 +0,0 @@ -name: Summarize Sentinel 5P L2 Items - -dataset: - owner: microsoft - name: sentinel-5p-l2 - -args: -- registry - -jobs: - create-splits: - tasks: - - id: list-prefixes - image: ${{ args.registry }}/pctasks-task-base:latest - task: pctasks.task.common.list_prefixes:task - args: - src_uri: blob://sentinel5euwest/sentinel-5p-stac - depth: 4 - environment: - AZURE_TENANT_ID: ${{ secrets.task-tenant-id }} - AZURE_CLIENT_ID: ${{ secrets.task-client-id }} - AZURE_CLIENT_SECRET: ${{ secrets.task-client-secret }} - schema_version: 1.0.0 - summarize-map: - foreach: - items: ${{ jobs.create-splits.tasks.list-prefixes.output.uris }} - tasks: - - id: list-files - image: ${{ args.registry }}/pctasks-task-base:latest - task: pctasks.task.common.list_files:task - args: - src_uri: ${{ item }} - extensions: - - .json - environment: - AZURE_TENANT_ID: ${{ secrets.task-tenant-id }} - AZURE_CLIENT_ID: ${{ secrets.task-client-id }} - AZURE_CLIENT_SECRET: ${{ secrets.task-client-secret }} - schema_version: 1.0.0 - - id: summarize-map - image: ${{ args.registry }}/pctasks-task-base:latest - task: pctasks.task.common.summarize:map_task - args: - uris: ${{ tasks.list-files.output.uris }} - include_keys: - - assets - - properties - environment: - AZURE_TENANT_ID: ${{ secrets.task-tenant-id }} - AZURE_CLIENT_ID: ${{ secrets.task-client-id }} - AZURE_CLIENT_SECRET: ${{ secrets.task-client-secret }} - schema_version: 1.0.0 - summarize-reduce: - tasks: - - id: summarize-reduce - image: ${{ args.registry }}/pctasks-task-base:latest - task: pctasks.task.common.summarize:reduce_task - args: - summaries: ${{ jobs.summarize-map.tasks.summarize-map.output.summary }} - - id: write-output - image: ${{ args.registry }}/pctasks-task-base:latest - task: pctasks.task.common.write:task - args: - uri: blob://sentinel5euwest/sentinel-5p-etl-data/summaries/2022-09-08.json - content: ${{ tasks.summarize-reduce.output.summary }} - environment: - AZURE_TENANT_ID: ${{ secrets.task-tenant-id }} - AZURE_CLIENT_ID: ${{ secrets.task-client-id }} - AZURE_CLIENT_SECRET: ${{ secrets.task-client-secret }} - schema_version: 1.0.0 - From 612a72b05f22164f094bdc50943161ed3692b6cf Mon Sep 17 00:00:00 2001 From: pjhartzell Date: Thu, 6 Apr 2023 10:47:51 -0400 Subject: [PATCH 06/15] fix: minor capitalization fixes --- datasets/sentinel-5p/collection/template.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/datasets/sentinel-5p/collection/template.json b/datasets/sentinel-5p/collection/template.json index 9869b608..2361daa4 100755 --- a/datasets/sentinel-5p/collection/template.json +++ b/datasets/sentinel-5p/collection/template.json @@ -56,13 +56,13 @@ ], "assets": { "thumbnail": { - "title": "Sentinel-5P Level-2 NetCDF", + "title": "Sentinel-5P Level-2 NetCDF Thumbnail", "href": "https://ai4edatasetspublicassets.blob.core.windows.net/assets/pc_thumbnails/sentinel-5p-l2-netcdf-thumb.png", "media_type": "image/png" }, "geoparquet-items": { "href": "abfs://items/sentinel-5p-l2-netcdf.parquet", - "title": "GeoParquet STAC items", + "title": "GeoParquet STAC Items", "description": "Snapshot of the collection's STAC items exported to GeoParquet format.", "type": "application/x-parquet", "roles": [ From f6a4bfd7cbc4d09cf0766aa80150becfc6f6f570 Mon Sep 17 00:00:00 2001 From: pjhartzell Date: Thu, 6 Apr 2023 21:02:48 -0400 Subject: [PATCH 07/15] fix: correct bad datetimes, handle antimeridian --- datasets/sentinel-5p/dataset.yaml | 1 + datasets/sentinel-5p/requirements.txt | 1 + datasets/sentinel-5p/sentinel_5p.py | 19 ++++++++++++++++--- 3 files changed, 18 insertions(+), 3 deletions(-) create mode 100644 datasets/sentinel-5p/requirements.txt diff --git a/datasets/sentinel-5p/dataset.yaml b/datasets/sentinel-5p/dataset.yaml index 73033ea3..9b729277 100644 --- a/datasets/sentinel-5p/dataset.yaml +++ b/datasets/sentinel-5p/dataset.yaml @@ -6,6 +6,7 @@ args: code: src: ${{ local.path(./sentinel_5p.py) }} + requirements: ${{ local.path(./requirements.txt) }} environment: AZURE_TENANT_ID: ${{ secrets.task-tenant-id }} diff --git a/datasets/sentinel-5p/requirements.txt b/datasets/sentinel-5p/requirements.txt new file mode 100644 index 00000000..f6940ff7 --- /dev/null +++ b/datasets/sentinel-5p/requirements.txt @@ -0,0 +1 @@ +stactools \ No newline at end of file diff --git a/datasets/sentinel-5p/sentinel_5p.py b/datasets/sentinel-5p/sentinel_5p.py index ed049bae..7fe97858 100644 --- a/datasets/sentinel-5p/sentinel_5p.py +++ b/datasets/sentinel-5p/sentinel_5p.py @@ -4,6 +4,7 @@ from typing import List, Union import pystac +from stactools.core.utils.antimeridian import Strategy, fix_item from pctasks.core.models.task import WaitTaskResult from pctasks.core.storage import StorageFactory @@ -78,7 +79,7 @@ def create_item( # providers should be supplied in the collection, not the item properties.pop("providers", None) - # add the custom product properties to a single property object + # combine the product custom properties to a single object product_custom_fields = {} keys = [k for k in properties.keys() if str(k).startswith(product)] if keys: @@ -99,6 +100,14 @@ def create_item( resolution = f"{float(parts[0])}x{float(parts[1])}km" properties["s5p:spatial_resolution"] = resolution + # correct bad datetimes + for k, v in properties.items(): + if k.endswith("datetime") and v.endswith("ZZ"): + properties[k] = v[:-2] + "Z" + for k, v in properties[f"s5p:{product}"].items(): + if k.endswith("datetime") and v.endswith("ZZ"): + properties[f"s5p:{product}"][k] = v[:-2] + "Z" + item_dict["properties"] = properties # ---- ASSETS ---- @@ -119,7 +128,7 @@ def create_item( if link["rel"] == "license": links.remove(link) - # add a unique link to the product landing page (or user manual if no landing page) + # add a unique link to the product landing page about_href = ABOUT_LINKS.get(product) links.append( { @@ -131,4 +140,8 @@ def create_item( item_dict["links"] = links - return [pystac.Item.from_dict(item_dict)] + # fix antimeridian + item = pystac.Item.from_dict(item_dict) + fix_item(item, Strategy.NORMALIZE) + + return [item] From 935725464273362601c99f844ddf95d73c0ed602 Mon Sep 17 00:00:00 2001 From: pjhartzell Date: Thu, 6 Apr 2023 22:18:42 -0400 Subject: [PATCH 08/15] fix: match incoming np product abbreviations --- datasets/sentinel-5p/sentinel_5p.py | 21 ++++++++++++--------- 1 file changed, 12 insertions(+), 9 deletions(-) diff --git a/datasets/sentinel-5p/sentinel_5p.py b/datasets/sentinel-5p/sentinel_5p.py index 7fe97858..83e2485f 100644 --- a/datasets/sentinel-5p/sentinel_5p.py +++ b/datasets/sentinel-5p/sentinel_5p.py @@ -28,9 +28,9 @@ "o3": "http://www.tropomi.eu/data-products/total-ozone-column", "o3_tcl": "http://www.tropomi.eu/data-products/tropospheric-ozone-column", "so2": "http://www.tropomi.eu/data-products/sulphur-dioxide", - "np_bd3": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa - "np_bd6": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa - "np_bd7": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa + "npbd3": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa + "npbd6": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa + "npbd7": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa } ASSET_TITLES = { @@ -44,9 +44,9 @@ "o3": "TROPOMI/S5P L2 Ozone Total Column", "o3_tcl": "TROPOMI/S5P L2 Ozone Tropospheric Column", "so2": "TROPOMI/S5P L2 Sulphur Dioxide Total Column", - "np_bd3": "TROPOMI/S5P VIIRS/NPP Band 3 Cloud Mask", - "np_bd6": "TROPOMI/S5P VIIRS/NPP Band 6 Cloud Mask", - "np_bd7": "TROPOMI/S5P VIIRS/NPP Band 7 Cloud Mask", + "npbd3": "TROPOMI/S5P VIIRS/NPP Band 3 Cloud Mask", + "npbd6": "TROPOMI/S5P VIIRS/NPP Band 6 Cloud Mask", + "npbd7": "TROPOMI/S5P VIIRS/NPP Band 7 Cloud Mask", } handler = logging.StreamHandler() @@ -71,6 +71,8 @@ def create_item( if not match: raise ValueError(f"Could not parse filename {Path(json_path).stem}") product = match.groupdict()["product"].strip("_").lower() + if product.startswith("np"): + product = product.replace("_", "") collection_identifier = match.groupdict()["collection"] # ---- PROPERTIES ---- @@ -104,9 +106,10 @@ def create_item( for k, v in properties.items(): if k.endswith("datetime") and v.endswith("ZZ"): properties[k] = v[:-2] + "Z" - for k, v in properties[f"s5p:{product}"].items(): - if k.endswith("datetime") and v.endswith("ZZ"): - properties[f"s5p:{product}"][k] = v[:-2] + "Z" + if f"s5p:{product}" in properties: + for k, v in properties[f"s5p:{product}"].items(): + if k.endswith("datetime") and v.endswith("ZZ"): + properties[f"s5p:{product}"][k] = v[:-2] + "Z" item_dict["properties"] = properties From efa6b26f0fdd3b6d03ec7e64b6bcdc5c56b4c9eb Mon Sep 17 00:00:00 2001 From: Pete Gadomski Date: Tue, 11 Apr 2023 06:11:46 -0600 Subject: [PATCH 09/15] fix: antimeridian for sentinel 5p --- datasets/sentinel-5p/requirements.txt | 2 +- datasets/sentinel-5p/sentinel_5p.py | 20 +++++++++++++++++--- 2 files changed, 18 insertions(+), 4 deletions(-) diff --git a/datasets/sentinel-5p/requirements.txt b/datasets/sentinel-5p/requirements.txt index f6940ff7..76aeddba 100644 --- a/datasets/sentinel-5p/requirements.txt +++ b/datasets/sentinel-5p/requirements.txt @@ -1 +1 @@ -stactools \ No newline at end of file +antimeridian @ git+https://github.com/gadomski/antimeridian@18bbfae538da7ac4110f86179f9d61b3834d0a1f diff --git a/datasets/sentinel-5p/sentinel_5p.py b/datasets/sentinel-5p/sentinel_5p.py index 83e2485f..5b9617b0 100644 --- a/datasets/sentinel-5p/sentinel_5p.py +++ b/datasets/sentinel-5p/sentinel_5p.py @@ -3,8 +3,10 @@ from pathlib import Path from typing import List, Union +import antimeridian import pystac -from stactools.core.utils.antimeridian import Strategy, fix_item +import shapely.geometry +from shapely.geometry import Polygon from pctasks.core.models.task import WaitTaskResult from pctasks.core.storage import StorageFactory @@ -49,6 +51,11 @@ "npbd7": "TROPOMI/S5P VIIRS/NPP Band 7 Cloud Mask", } +O3_TCL_GEOMETRY = shapely.geometry.mapping( + Polygon([(-180, -19.75), (180, -19.75), (180, 19.75), (-180, 19.75)]) +) +O3_TCL_BBOX = [-180, -19.75, 180, 19.75] + handler = logging.StreamHandler() handler.setFormatter(logging.Formatter("[%(levelname)s]:%(asctime)s: %(message)s")) handler.setLevel(logging.INFO) @@ -143,8 +150,15 @@ def create_item( item_dict["links"] = links - # fix antimeridian + # fix antimeridian, except for o3_tcl, where we do some hardcode hacks instead item = pystac.Item.from_dict(item_dict) - fix_item(item, Strategy.NORMALIZE) + if product == "o3_tcl": + item.geometry = O3_TCL_GEOMETRY + item.bbox = O3_TCL_BBOX + else: + polygon = shapely.geometry.shape(item.geometry) + geometry = antimeridian.fix_polygon(polygon) + item.bbox = list(geometry.bounds) + item.geometry = shapely.geometry.mapping(geometry) return [item] From d615ee8567d5fffb3f895c6c5f1ef85a60544308 Mon Sep 17 00:00:00 2001 From: Pete Gadomski Date: Fri, 14 Apr 2023 11:16:32 -0600 Subject: [PATCH 10/15] fix: update to released package --- datasets/sentinel-5p/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/datasets/sentinel-5p/requirements.txt b/datasets/sentinel-5p/requirements.txt index 76aeddba..d8f982bc 100644 --- a/datasets/sentinel-5p/requirements.txt +++ b/datasets/sentinel-5p/requirements.txt @@ -1 +1 @@ -antimeridian @ git+https://github.com/gadomski/antimeridian@18bbfae538da7ac4110f86179f9d61b3834d0a1f +antimeridian==0.0.1 From bebde2f972ea3f9e917f59af96bc1d3d6e5a0ddb Mon Sep 17 00:00:00 2001 From: pjhartzell Date: Fri, 28 Apr 2023 09:18:19 -0400 Subject: [PATCH 11/15] fix: sundry corrections - change s3:spatial_resolution from string to list of integers - add s3:product_name - make asset keys kebab-case - remove redundant asset title prefixes - round geometry and bbox coordinates to original precision after antimeridian fix --- datasets/sentinel-5p/collection/template.json | 73 +++++++---- datasets/sentinel-5p/requirements.txt | 2 +- datasets/sentinel-5p/sentinel_5p.py | 124 +++++++++++------- 3 files changed, 130 insertions(+), 69 deletions(-) diff --git a/datasets/sentinel-5p/collection/template.json b/datasets/sentinel-5p/collection/template.json index 2361daa4..81ea9c27 100755 --- a/datasets/sentinel-5p/collection/template.json +++ b/datasets/sentinel-5p/collection/template.json @@ -115,11 +115,38 @@ "L2__O3____", "L2__SO2___" ], + "s5p:product_name": [ + "aer-ai", + "aer-lh", + "ch4", + "cloud", + "co", + "hcho", + "no2", + "np-bd3", + "np-bd6", + "np-bd7", + "o3-tcl", + "o3", + "so2" + ], "s5p:spatial_resolution": [ - "5.5x3.5km", - "5.5x7.0km", - "7.0x3.5km", - "7.0x7.0km" + [ + 5500, + 3500 + ], + [ + 5500, + 7000 + ], + [ + 7000, + 3500 + ], + [ + 7000, + 7000 + ] ] }, "extent": { @@ -143,92 +170,92 @@ } }, "item_assets": { - "aer_ai": { - "title": "TROPOMI/S5P L2 Ultraviolet Aerosol Index", + "aer-ai": { + "title": "Ultraviolet Aerosol Index", "type": "application/x-netcdf", "roles": [ "data" ] }, - "aer_lh": { - "title": "TROPOMI/S5P L2 Aerosol Layer Height", + "aer-lh": { + "title": "Aerosol Layer Height", "type": "application/x-netcdf", "roles": [ "data" ] }, "ch4": { - "title": "TROPOMI/S5P L2 Methane Total Column", + "title": "Methane Total Column", "type": "application/x-netcdf", "roles": [ "data" ] }, "cloud": { - "title": "TROPOMI/S5P L2 Cloud Fraction, Albedo, and Top Pressure", + "title": "Cloud Fraction, Albedo, and Top Pressure", "type": "application/x-netcdf", "roles": [ "data" ] }, "co": { - "title": "TROPOMI/S5P L2 Carbon Monoxide Total Column", + "title": "Carbon Monoxide Total Column", "type": "application/x-netcdf", "roles": [ "data" ] }, "hcho": { - "title": "TROPOMI/S5P L2 Formaldehyde Total Column", + "title": "Formaldehyde Total Column", "type": "application/x-netcdf", "roles": [ "data" ] }, "no2": { - "title": "TROPOMI/S5P L2 Nitrogen Dioxide Total Column", + "title": "Nitrogen Dioxide Total Column", "type": "application/x-netcdf", "roles": [ "data" ] }, "o3": { - "title": "TROPOMI/S5P L2 Ozone Total Column", + "title": "Ozone Total Column", "type": "application/x-netcdf", "roles": [ "data" ] }, - "o3_tcl": { - "title": "TROPOMI/S5P L2 Ozone Tropospheric Column", + "o3-tcl": { + "title": "Ozone Tropospheric Column", "type": "application/x-netcdf", "roles": [ "data" ] }, "so2": { - "title": "TROPOMI/S5P L2 Sulphur Dioxide Total Column", + "title": "Sulphur Dioxide Total Column", "type": "application/x-netcdf", "roles": [ "data" ] }, - "np_bd3": { - "title": "TROPOMI/S5P VIIRS/NPP Band 3 Cloud Mask", + "np-bd3": { + "title": "VIIRS/NPP Band 3 Cloud Mask", "type": "application/x-netcdf", "roles": [ "data" ] }, - "np_bd6": { - "title": "TROPOMI/S5P VIIRS/NPP Band 6 Cloud Mask", + "np-bd6": { + "title": "VIIRS/NPP Band 6 Cloud Mask", "type": "application/x-netcdf", "roles": [ "data" ] }, - "np_bd7": { - "title": "TROPOMI/S5P VIIRS/NPP Band 7 Cloud Maskt", + "np-bd7": { + "title": "VIIRS/NPP Band 7 Cloud Maskt", "type": "application/x-netcdf", "roles": [ "data" diff --git a/datasets/sentinel-5p/requirements.txt b/datasets/sentinel-5p/requirements.txt index d8f982bc..4a6eba1e 100644 --- a/datasets/sentinel-5p/requirements.txt +++ b/datasets/sentinel-5p/requirements.txt @@ -1 +1 @@ -antimeridian==0.0.1 +antimeridian @ git+https://github.com/gadomski/antimeridian.git@cw-only \ No newline at end of file diff --git a/datasets/sentinel-5p/sentinel_5p.py b/datasets/sentinel-5p/sentinel_5p.py index 5b9617b0..5355f489 100644 --- a/datasets/sentinel-5p/sentinel_5p.py +++ b/datasets/sentinel-5p/sentinel_5p.py @@ -1,7 +1,7 @@ import logging import re from pathlib import Path -from typing import List, Union +from typing import Any, List, Union import antimeridian import pystac @@ -20,35 +20,35 @@ ) ABOUT_LINKS = { - "aer_ai": "http://www.tropomi.eu/data-products/uv-aerosol-index", - "aer_lh": "http://www.tropomi.eu/data-products/aerosol-layer-height", - "ch4": "http://www.tropomi.eu/data-products/methane", - "cloud": "http://www.tropomi.eu/data-products/cloud", - "co": "http://www.tropomi.eu/data-products/carbon-monoxide", - "hcho": "http://www.tropomi.eu/data-products/formaldehyde", - "no2": "http://www.tropomi.eu/data-products/nitrogen-dioxide", - "o3": "http://www.tropomi.eu/data-products/total-ozone-column", - "o3_tcl": "http://www.tropomi.eu/data-products/tropospheric-ozone-column", - "so2": "http://www.tropomi.eu/data-products/sulphur-dioxide", - "npbd3": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa - "npbd6": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa - "npbd7": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa + "L2__AER_AI": "http://www.tropomi.eu/data-products/uv-aerosol-index", + "L2__AER_LH": "http://www.tropomi.eu/data-products/aerosol-layer-height", + "L2__CH4___": "http://www.tropomi.eu/data-products/methane", + "L2__CLOUD_": "http://www.tropomi.eu/data-products/cloud", + "L2__CO____": "http://www.tropomi.eu/data-products/carbon-monoxide", + "L2__HCHO__": "http://www.tropomi.eu/data-products/formaldehyde", + "L2__NO2___": "http://www.tropomi.eu/data-products/nitrogen-dioxide", + "L2__O3____": "http://www.tropomi.eu/data-products/total-ozone-column", + "L2__O3_TCL": "http://www.tropomi.eu/data-products/tropospheric-ozone-column", + "L2__SO2___": "http://www.tropomi.eu/data-products/sulphur-dioxide", + "L2__NP_BD3": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa + "L2__NP_BD6": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa + "L2__NP_BD7": "https://sentinel.esa.int/web/sentinel/technical-guides/sentinel-5p/products-algorithms", # noqa } ASSET_TITLES = { - "aer_ai": "TROPOMI/S5P L2 Ultraviolet Aerosol Index", - "aer_lh": "TROPOMI/S5P L2 Aerosol Layer Height", - "ch4": "TROPOMI/S5P L2 Methane Total Column", - "cloud": "TROPOMI/S5P L2 Cloud Fraction, Albedo, and Top Pressure", - "co": "TROPOMI/S5P L2 Carbon Monoxide Total Column", - "hcho": "TROPOMI/S5P L2 Formaldehyde Total Column", - "no2": "TROPOMI/S5P L2 Nitrogen Dioxide Total Column", - "o3": "TROPOMI/S5P L2 Ozone Total Column", - "o3_tcl": "TROPOMI/S5P L2 Ozone Tropospheric Column", - "so2": "TROPOMI/S5P L2 Sulphur Dioxide Total Column", - "npbd3": "TROPOMI/S5P VIIRS/NPP Band 3 Cloud Mask", - "npbd6": "TROPOMI/S5P VIIRS/NPP Band 6 Cloud Mask", - "npbd7": "TROPOMI/S5P VIIRS/NPP Band 7 Cloud Mask", + "L2__AER_AI": "Ultraviolet Aerosol Index", + "L2__AER_LH": "Aerosol Layer Height", + "L2__CH4___": "Methane Total Column", + "L2__CLOUD_": "Cloud Fraction, Albedo, and Top Pressure", + "L2__CO____": "Carbon Monoxide Total Column", + "L2__HCHO__": "Formaldehyde Total Column", + "L2__NO2___": "Nitrogen Dioxide Total Column", + "L2__O3____": "Ozone Total Column", + "L2__O3_TCL": "Ozone Tropospheric Column", + "L2__SO2___": "Sulphur Dioxide Total Column", + "L2__NP_BD3": "VIIRS/NPP Band 3 Cloud Mask", + "L2__NP_BD6": "VIIRS/NPP Band 6 Cloud Mask", + "L2__NP_BD7": "VIIRS/NPP Band 7 Cloud Mask", } O3_TCL_GEOMETRY = shapely.geometry.mapping( @@ -64,7 +64,30 @@ logger.setLevel(logging.INFO) -class Sentinel5pNetCDFCollection(Collection): +def recursive_round(coordinates: List[Any], precision: int) -> List[Any]: + """Rounds a list of numbers. The list can contain additional nested lists + or tuples of numbers. + + Any tuples encountered will be converted to lists. + + Args: + coordinates (List[Any]): A list of numbers, possibly containing nested + lists or tuples of numbers. + precision (int): Number of decimal places to use for rounding. + + Returns: + List[Any]: The list of numbers rounded to the given precision. + """ + rounded: List[Any] = [] + for value in coordinates: + if isinstance(value, (int, float)): + rounded.append(round(value, precision)) + else: + rounded.append(recursive_round(list(value), precision)) + return rounded + + +class Sentinel5pNetCDFCollection(Collection): # type: ignore @classmethod def create_item( cls, asset_uri: str, storage_factory: StorageFactory @@ -77,10 +100,14 @@ def create_item( match = FILENAME_EXPR.match(Path(netcdf_filename).stem) if not match: raise ValueError(f"Could not parse filename {Path(json_path).stem}") - product = match.groupdict()["product"].strip("_").lower() - if product.startswith("np"): - product = product.replace("_", "") + + prefix = match.groupdict()["product"].strip("_").lower() + if prefix.startswith("np"): + prefix = prefix.replace("_", "") + collection_identifier = match.groupdict()["collection"] + product_type = item_dict["properties"]["s5p:product_type"] + product_name = product_type.lstrip("L2_").rstrip("_").lower().replace("_", "-") # ---- PROPERTIES ---- properties = item_dict.pop("properties") @@ -90,33 +117,36 @@ def create_item( # combine the product custom properties to a single object product_custom_fields = {} - keys = [k for k in properties.keys() if str(k).startswith(product)] + keys = [k for k in properties.keys() if str(k).startswith(prefix)] if keys: for key in keys: product_custom_fields[ - str(key).replace(f"{product}:", "") + str(key).replace(f"{prefix}:", "") ] = properties.pop(key) - properties[f"s5p:{product}"] = product_custom_fields + properties[f"s5p:{prefix}"] = product_custom_fields # add sentinel-5p collection_identifier properties["s5p:collection_identifier"] = collection_identifier - # clean up spatial_resolution + # convert spatial resolution to meters, store in list to match sentinel-3 + # order is [height, width], aka [along track, across track] resolution = properties["s5p:spatial_resolution"] resolution = resolution.strip().strip("km2").strip("km").strip() parts = resolution.split("x") assert len(parts) == 2 - resolution = f"{float(parts[0])}x{float(parts[1])}km" - properties["s5p:spatial_resolution"] = resolution + properties["s5p:spatial_resolution"] = [int(float(p)) * 1000 for p in parts] # correct bad datetimes for k, v in properties.items(): if k.endswith("datetime") and v.endswith("ZZ"): properties[k] = v[:-2] + "Z" - if f"s5p:{product}" in properties: - for k, v in properties[f"s5p:{product}"].items(): + if f"s5p:{prefix}" in properties: + for k, v in properties[f"s5p:{prefix}"].items(): if k.endswith("datetime") and v.endswith("ZZ"): - properties[f"s5p:{product}"][k] = v[:-2] + "Z" + properties[f"s5p:{prefix}"][k] = v[:-2] + "Z" + + # add a user-friendly product name + properties["s5p:product_name"] = product_name item_dict["properties"] = properties @@ -126,9 +156,9 @@ def create_item( # the supplied asset description is too brief to be a description and # too inconsistent to use as a title; use a custom title instead asset.pop("description") - asset["title"] = ASSET_TITLES[product] + asset["title"] = ASSET_TITLES[product_type] - item_dict["assets"][product] = asset + item_dict["assets"][product_name] = asset # ---- LINKS ---- links = item_dict.pop("links") @@ -139,20 +169,20 @@ def create_item( links.remove(link) # add a unique link to the product landing page - about_href = ABOUT_LINKS.get(product) links.append( { "rel": "about", - "href": about_href, + "href": ABOUT_LINKS.get(product_type), "type": "text/html", } ) item_dict["links"] = links + # ---- GEOMETRY ---- # fix antimeridian, except for o3_tcl, where we do some hardcode hacks instead item = pystac.Item.from_dict(item_dict) - if product == "o3_tcl": + if product_name == "o3-tcl": item.geometry = O3_TCL_GEOMETRY item.bbox = O3_TCL_BBOX else: @@ -160,5 +190,9 @@ def create_item( geometry = antimeridian.fix_polygon(polygon) item.bbox = list(geometry.bounds) item.geometry = shapely.geometry.mapping(geometry) + item.bbox = recursive_round(item.bbox, precision=6) + item.geometry["coordinates"] = recursive_round( # type: ignore + list(item.geometry["coordinates"]), precision=6 # type: ignore + ) return [item] From 72f89ad02214272b647cb0c775ceab1b6a60849f Mon Sep 17 00:00:00 2001 From: pjhartzell Date: Fri, 28 Apr 2023 13:35:14 -0400 Subject: [PATCH 12/15] fix: add dockerfile, update template, update requirements --- datasets/sentinel-5p/Dockerfile | 74 +++++++++++++++++++ datasets/sentinel-5p/README.md | 12 ++- datasets/sentinel-5p/collection/template.json | 18 ----- datasets/sentinel-5p/dataset.yaml | 4 +- datasets/sentinel-5p/requirements.txt | 2 +- 5 files changed, 88 insertions(+), 22 deletions(-) create mode 100644 datasets/sentinel-5p/Dockerfile diff --git a/datasets/sentinel-5p/Dockerfile b/datasets/sentinel-5p/Dockerfile new file mode 100644 index 00000000..828da64b --- /dev/null +++ b/datasets/sentinel-5p/Dockerfile @@ -0,0 +1,74 @@ +FROM ubuntu:20.04 + +# Setup timezone info +ENV TZ=UTC + +ENV LC_ALL=C.UTF-8 +ENV LANG=C.UTF-8 + +RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone + +RUN apt-get update && apt-get install -y software-properties-common + +RUN add-apt-repository ppa:ubuntugis/ppa && \ + apt-get update && \ + apt-get install -y build-essential python3-dev python3-pip \ + jq unzip ca-certificates wget curl git && \ + apt-get autoremove && apt-get autoclean && apt-get clean + +RUN update-alternatives --install /usr/bin/python python /usr/bin/python3 10 + +# See https://github.com/mapbox/rasterio/issues/1289 +ENV CURL_CA_BUNDLE=/etc/ssl/certs/ca-certificates.crt + +# Install Python 3.8 +RUN curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-$(uname)-$(uname -m).sh" \ + && bash "Mambaforge-$(uname)-$(uname -m).sh" -b -p /opt/conda \ + && rm -rf "Mambaforge-$(uname)-$(uname -m).sh" + +ENV PATH /opt/conda/bin:$PATH +ENV LD_LIBRARY_PATH /opt/conda/lib/:$LD_LIBRARY_PATH + +RUN mamba install -y -c conda-forge python=3.8 gdal=3.3.3 pip setuptools cython numpy==1.21.5 + +RUN python -m pip install --upgrade pip + +# Install common packages +COPY requirements-task-base.txt /tmp/requirements.txt +RUN python -m pip install --no-build-isolation -r /tmp/requirements.txt + +# +# Copy and install packages +# + +COPY pctasks/core /opt/src/pctasks/core +RUN cd /opt/src/pctasks/core && \ + pip install . + +COPY pctasks/cli /opt/src/pctasks/cli +RUN cd /opt/src/pctasks/cli && \ + pip install . + +COPY pctasks/task /opt/src/pctasks/task +RUN cd /opt/src/pctasks/task && \ + pip install . + +COPY pctasks/client /opt/src/pctasks/client +RUN cd /opt/src/pctasks/client && \ + pip install . + +COPY pctasks/ingest /opt/src/pctasks/ingest +RUN cd /opt/src/pctasks/ingest && \ + pip install . + +COPY pctasks/dataset /opt/src/pctasks/dataset +RUN cd /opt/src/pctasks/dataset && \ + pip install . + +COPY ./datasets/sentinel-5p/requirements.txt /opt/src/datasets/sentinel-5p/requirements.txt +RUN python3 -m pip install -r /opt/src/datasets/sentinel-5p/requirements.txt + +# Setup Python Path to allow import of test modules +ENV PYTHONPATH=/opt/src:$PYTHONPATH + +WORKDIR /opt/src diff --git a/datasets/sentinel-5p/README.md b/datasets/sentinel-5p/README.md index 0571f3e1..1f2b162a 100644 --- a/datasets/sentinel-5p/README.md +++ b/datasets/sentinel-5p/README.md @@ -1 +1,11 @@ -# Sentinel-5 Precursor +# planetary-computer-tasks dataset: sentinel-5p + +Sentinel 5 Precursor + +## Building the Docker image + +To build and push a custom docker image to our container registry: + +```shell +az acr build -r {the registry} --subscription {the subscription} -t pctasks-sentinel-5p:latest -f datasets/sentinel-5p/Dockerfile . +``` diff --git a/datasets/sentinel-5p/collection/template.json b/datasets/sentinel-5p/collection/template.json index 81ea9c27..8d526b24 100755 --- a/datasets/sentinel-5p/collection/template.json +++ b/datasets/sentinel-5p/collection/template.json @@ -129,24 +129,6 @@ "o3-tcl", "o3", "so2" - ], - "s5p:spatial_resolution": [ - [ - 5500, - 3500 - ], - [ - 5500, - 7000 - ], - [ - 7000, - 3500 - ], - [ - 7000, - 7000 - ] ] }, "extent": { diff --git a/datasets/sentinel-5p/dataset.yaml b/datasets/sentinel-5p/dataset.yaml index 9b729277..dd65527b 100644 --- a/datasets/sentinel-5p/dataset.yaml +++ b/datasets/sentinel-5p/dataset.yaml @@ -1,12 +1,11 @@ id: sentinel_5p -image: ${{ args.registry }}/pctasks-task-base:latest +image: ${{ args.registry }}/pctasks-sentinel-5p:latest args: - registry code: src: ${{ local.path(./sentinel_5p.py) }} - requirements: ${{ local.path(./requirements.txt) }} environment: AZURE_TENANT_ID: ${{ secrets.task-tenant-id }} @@ -26,3 +25,4 @@ collections: chunk_length: 5000 # Larger? There are 1.33 million blobs in storage chunk_storage: uri: blob://sentinel5euwest/sentinel-5p-etl-data/pctasks-chunks/ + diff --git a/datasets/sentinel-5p/requirements.txt b/datasets/sentinel-5p/requirements.txt index 4a6eba1e..f546863c 100644 --- a/datasets/sentinel-5p/requirements.txt +++ b/datasets/sentinel-5p/requirements.txt @@ -1 +1 @@ -antimeridian @ git+https://github.com/gadomski/antimeridian.git@cw-only \ No newline at end of file +antimeridian==0.2.2 \ No newline at end of file From fbb03e27ab812fa1052276c4e64b3a0ef0ee4f48 Mon Sep 17 00:00:00 2001 From: pjhartzell Date: Fri, 28 Apr 2023 14:35:32 -0400 Subject: [PATCH 13/15] add temporary limit on number of chunks to process --- datasets/sentinel-5p/dataset.yaml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/datasets/sentinel-5p/dataset.yaml b/datasets/sentinel-5p/dataset.yaml index dd65527b..3f01e6d7 100644 --- a/datasets/sentinel-5p/dataset.yaml +++ b/datasets/sentinel-5p/dataset.yaml @@ -22,7 +22,8 @@ collections: chunks: options: extensions: [.json] - chunk_length: 5000 # Larger? There are 1.33 million blobs in storage + chunk_length: 5000 + limit: 200 # TODO: Remove this chunk_storage: uri: blob://sentinel5euwest/sentinel-5p-etl-data/pctasks-chunks/ From e6ce59c7efeabf873670627f28c33f42d3f75d37 Mon Sep 17 00:00:00 2001 From: Tom Augspurger Date: Fri, 28 Apr 2023 14:31:49 -0500 Subject: [PATCH 14/15] Fixed typo --- datasets/sentinel-5p/collection/template.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/datasets/sentinel-5p/collection/template.json b/datasets/sentinel-5p/collection/template.json index 8d526b24..db13cd24 100755 --- a/datasets/sentinel-5p/collection/template.json +++ b/datasets/sentinel-5p/collection/template.json @@ -237,7 +237,7 @@ ] }, "np-bd7": { - "title": "VIIRS/NPP Band 7 Cloud Maskt", + "title": "VIIRS/NPP Band 7 Cloud Mask", "type": "application/x-netcdf", "roles": [ "data" From d0b63ef7419b9d270f88f945d6a36b1b9732c8ff Mon Sep 17 00:00:00 2001 From: Tom Augspurger Date: Fri, 28 Apr 2023 14:33:14 -0500 Subject: [PATCH 15/15] Updated dataset.yaml * added split * removed limit --- datasets/ms-buildings/Dockerfile | 74 +++++++++++++++++++++++++++++++ datasets/sentinel-5p/dataset.yaml | 17 ++++++- 2 files changed, 89 insertions(+), 2 deletions(-) create mode 100644 datasets/ms-buildings/Dockerfile diff --git a/datasets/ms-buildings/Dockerfile b/datasets/ms-buildings/Dockerfile new file mode 100644 index 00000000..1cb83935 --- /dev/null +++ b/datasets/ms-buildings/Dockerfile @@ -0,0 +1,74 @@ +FROM ubuntu:20.04 + +# Setup timezone info +ENV TZ=UTC + +ENV LC_ALL=C.UTF-8 +ENV LANG=C.UTF-8 + +RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone + +RUN apt-get update && apt-get install -y software-properties-common + +RUN add-apt-repository ppa:ubuntugis/ppa && \ + apt-get update && \ + apt-get install -y build-essential python3-dev python3-pip \ + jq unzip ca-certificates wget curl git && \ + apt-get autoremove && apt-get autoclean && apt-get clean + +RUN update-alternatives --install /usr/bin/python python /usr/bin/python3 10 + +# See https://github.com/mapbox/rasterio/issues/1289 +ENV CURL_CA_BUNDLE=/etc/ssl/certs/ca-certificates.crt + +# Install Python 3.11 +RUN curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-$(uname)-$(uname -m).sh" \ + && bash "Mambaforge-$(uname)-$(uname -m).sh" -b -p /opt/conda \ + && rm -rf "Mambaforge-$(uname)-$(uname -m).sh" + +ENV PATH /opt/conda/bin:$PATH +ENV LD_LIBRARY_PATH /opt/conda/lib/:$LD_LIBRARY_PATH + +RUN mamba install -y -c conda-forge python=3.11 gdal pip setuptools cython numpy + +RUN python -m pip install --upgrade pip + +# Install common packages +COPY requirements-task-base.txt /tmp/requirements.txt +RUN python -m pip install --no-build-isolation -r /tmp/requirements.txt + +# +# Copy and install packages +# + +COPY pctasks/core /opt/src/pctasks/core +RUN cd /opt/src/pctasks/core && \ + pip install . + +COPY pctasks/cli /opt/src/pctasks/cli +RUN cd /opt/src/pctasks/cli && \ + pip install . + +COPY pctasks/task /opt/src/pctasks/task +RUN cd /opt/src/pctasks/task && \ + pip install . + +COPY pctasks/client /opt/src/pctasks/client +RUN cd /opt/src/pctasks/client && \ + pip install . + +COPY pctasks/ingest /opt/src/pctasks/ingest +RUN cd /opt/src/pctasks/ingest && \ + pip install . + +COPY pctasks/dataset /opt/src/pctasks/dataset +RUN cd /opt/src/pctasks/dataset && \ + pip install . + +COPY ./datasets/ms-buildings/requirements.txt /opt/src/datasets/ms-buildings/requirements.txt +RUN python3 -m pip install -r /opt/src/datasets/ms-buildings/requirements.txt + +# Setup Python Path to allow import of test modules +ENV PYTHONPATH=/opt/src:$PYTHONPATH + +WORKDIR /opt/src diff --git a/datasets/sentinel-5p/dataset.yaml b/datasets/sentinel-5p/dataset.yaml index 3f01e6d7..a68c7bb6 100644 --- a/datasets/sentinel-5p/dataset.yaml +++ b/datasets/sentinel-5p/dataset.yaml @@ -17,13 +17,26 @@ collections: template: ${{ local.path(./collection) }} class: sentinel_5p:Sentinel5pNetCDFCollection asset_storage: + # The blob storage pattern is + # + # | sentinel-5p-st2ac/ + # | TROPOMI/ + # | L2_AER_AI/ + # | 2018/ + # | 06/ + # | 28/ + # | ... + # | L2_AER_LH + # | ... + # | + # We want to split by product (L2_AER_AI) - uri: blob://sentinel5euwest/sentinel-5p-stac/TROPOMI/ token: ${{ pc.get_token(sentinel5euwest, sentinel-5p-stac) }} chunks: options: extensions: [.json] chunk_length: 5000 - limit: 200 # TODO: Remove this + splits: + - depth: 1 chunk_storage: uri: blob://sentinel5euwest/sentinel-5p-etl-data/pctasks-chunks/ -