diff --git a/DESCRIPTION b/DESCRIPTION
index dd88b77b6..3faba99e6 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
Package: singleCellTK
Type: Package
Title: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
-Version: 2.15.2
+Version: 2.16.1
Authors@R: c(person(given="Yichen", family="Wang", email="wangych@bu.edu", role=c("aut"),
comment = c(ORCID = "0000-0003-4347-5199")),
person(given="Irzam", family="Sarfraz", email="isarfraz@bu.edu", role=c("aut"),
diff --git a/LICENSE b/LICENSE
index 01695710d..88e1e4ef2 100644
--- a/LICENSE
+++ b/LICENSE
@@ -1,21 +1,2 @@
YEAR: 2016
-COPYRIGHT HOLDER: David Jenkins and W. Evan Johnson
-
-The MIT License (MIT) (http://opensource.org/licenses/MIT)
-
-Permission is hereby granted, free of charge, to any person obtaining a copy of
-this software and associated documentation files (the "Software"), to deal in
-the Software without restriction, including without limitation the rights to
-use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
-the Software, and to permit persons to whom the Software is furnished to do so,
-subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
-FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
-COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
-IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
-CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+COPYRIGHT HOLDER: David Jenkins, W. Evan Johnson, and Joshua D. Campbell
diff --git a/NEWS.md b/NEWS.md
index eecdbb8d3..32873d42a 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,7 +1,17 @@
+Changes in Version 2.16.1 (2024-02-12)
+================================================================================
+* Fixed decontX/soupX webapp error
+* Fixed error in reportCellQC
+* Fixed additional bugs with Seurat V5 integration
+
+Changes in Version 2.16.0 (2024-10-29)
+================================================================================
+* Updated version to match Bioconductor 3.20
+
Changes in Version 2.14.0 (2024-05-03)
================================================================================
* Updated version to match Bioconductor 3.19
-* Update runGSVA fucntion to work with newer GSVA package
+* Update runGSVA function to work with newer GSVA package
Changes in Version 2.12.2 (2024-01-28)
================================================================================
diff --git a/R/plotSCEHeatmap.R b/R/plotSCEHeatmap.R
index f76c307bb..90f3d4f2e 100644
--- a/R/plotSCEHeatmap.R
+++ b/R/plotSCEHeatmap.R
@@ -290,7 +290,7 @@ plotSCEHeatmap <- function(inSCE, useAssay = 'logcounts', useReducedDim = NULL,
#colData(SCE) <- colData(SCE)[,c(aggregateCol),drop=FALSE] ##change
temp_df<-as.data.frame(colData(SCE)[,c(aggregateCol),drop=FALSE]) %>%
- unite("new_colnames",1:ncol(.data),sep = "_",remove = FALSE) %>%
+ unite("new_colnames",dplyr::everything(),sep = "_",remove = FALSE) %>%
remove_rownames() %>%
# mutate(aggregated_column = new_colnames) %>%
# dplyr::select(new_colnames, aggregated_column) %>%
diff --git a/R/seuratFunctions.R b/R/seuratFunctions.R
index 3cf3f565b..ab2057e74 100644
--- a/R/seuratFunctions.R
+++ b/R/seuratFunctions.R
@@ -1117,7 +1117,7 @@ runSeuratUMAP <- function(inSCE,
#' other libraries. Default \code{NULL}.
#' @param interactive Logical value indicating if the returned object should
#' be an interactive plotly object if \code{TRUE} or a ggplot object if
-#' set to \code{FALSE}. Default is \code{TRUE}.
+#' set to \code{FALSE}. Default is \code{FALSE}.
#' @examples
#' data(scExample, package = "singleCellTK")
#' \dontrun{
@@ -1134,7 +1134,7 @@ plotSeuratElbow <- function(inSCE,
reduction = "pca",
ndims = 20,
externalReduction = NULL,
- interactive = TRUE) {
+ interactive = FALSE) {
seuratObject <- convertSCEToSeurat(inSCE)
if (!is.null(externalReduction)) {
seuratObject@reductions <- list(pca = externalReduction)
diff --git a/docs/404.html b/docs/404.html
index 51a131a57..285f09d3f 100644
--- a/docs/404.html
+++ b/docs/404.html
@@ -6,7 +6,7 @@
Page not found (404) • singleCellTK
-
+
@@ -19,7 +19,7 @@
-
+