From 82c06bb002c509f0e512aef79c6eeed64a03efae Mon Sep 17 00:00:00 2001
From: Cornelius Roemer <cornelius.roemer@gmail.com>
Date: Fri, 15 Sep 2023 11:22:18 +0200
Subject: [PATCH] Add default profile to set Snakemake CLI args

The special profile at `profiles/default/config.yaml` is used by snakemake >= 7.29
by default without requiring passing in via
`--profile profiles/default`

Profiles are nice because they reduce number of CLI args
required when invoking `snakemake`
---
 profiles/default/config.yaml | 4 ++++
 1 file changed, 4 insertions(+)
 create mode 100644 profiles/default/config.yaml

diff --git a/profiles/default/config.yaml b/profiles/default/config.yaml
new file mode 100644
index 0000000..5c9afc9
--- /dev/null
+++ b/profiles/default/config.yaml
@@ -0,0 +1,4 @@
+cores: all
+rerun-incomplete: true
+printshellcmds: true
+reason: true
\ No newline at end of file