diff --git a/envs/README.md b/envs/README.md index d29e89b..2fc2bf9 100644 --- a/envs/README.md +++ b/envs/README.md @@ -87,13 +87,20 @@ eb --robot fcps.eb --job-cores=10 eb --robot clustbench.eb --job-cores=10 ``` -Running a benchmark: +Running a benchmark assuming the modules were installed within the `MODULE_BASEPATH`/software/modules/all path (perhaps `MODULE_BASEPATH` equals `$EASYBUILD_PREFIX`): ```bash +# during a debugging session, this was `/home/mark/envmodules_debug/.local/easybuild/` +MODULE_BASEPATH='updateme' + source /cvmfs/software.eessi.io/versions/2025.06/init/lmod/bash ## if not loaded module load EESSI-extend/2025.06-easybuild ## if not loaded -export MODULEPATH="$EASYBUILD_PREFIX"/software/modules/all:"$MODULEPATH" +export MODULEPATH="$MODULE_BASEPATH"/software/modules/all:"$MODULEPATH" module use $MODULEPATH +echo $MODULEPATH + +# during a debugging session, the resulting $MODULEPATH contained both the MODULE_BASEPATH and EESSI's injections +# /home/mark/envmodules_debug/.local/easybuild/software/modules/all:/home/mark/eessi/versions/2025.06/software/linux/x86_64/amd/zen2/modules/all:/cvmfs/software.eessi.io/host_injections/2025.06/software/linux/x86_64/amd/zen2/modules/all:/cvmfs/software.eessi.io/versions/2025.06/software/linux/x86_64/amd/zen2/modules/all:/cvmfs/software.eessi.io/versions/2025.06/init/modules ob run benchmark -b Clustering_envmodules.yml --local-storage --cores 30 ``` diff --git a/envs/clustbench.eb b/envs/clustbench.eb index 505f61a..ef079b1 100644 --- a/envs/clustbench.eb +++ b/envs/clustbench.eb @@ -23,8 +23,7 @@ builddependencies = [ dependencies = [ ('Python', '3.12.3'), ('SciPy-bundle', '2024.05'), - ('matplotlib', '3.9.2'), - ('scikit-learn', '1.6.1') + ('matplotlib', '3.9.2') ] sanity_pip_check = True @@ -46,10 +45,10 @@ exts_list = [ ('fastcluster', '1.2.6', { 'checksums': ['aab886efa7b6bba7ac124f4498153d053e5a08b822d2254926b7206cdf5a8aa6'], }), - ## ('scikit-learn', '1.6.1', { - ## 'modulename': 'sklearn', - ## 'source_urls' : [PYPI_SOURCE] - ## }), + ('scikit-learn', '1.4.2', { + 'modulename': 'sklearn', + 'source_urls' : [PYPI_SOURCE] + }), ('genieclust', '1.1.6', { 'source_urls': ['https://github.com/gagolews/genieclust/archive/refs/tags/'], 'sources': ['v1.1.6.tar.gz'], diff --git a/envs/fcps.eb b/envs/fcps.eb index 45d1c41..6cdcfb7 100644 --- a/envs/fcps.eb +++ b/envs/fcps.eb @@ -1,14 +1,10 @@ ## largely from https://raw.githubusercontent.com/easybuilders/easybuild-easyconfigs/e1d687c746bf66e1beb9edf18902658d3ba66091/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.20-foss-2024a-R-4.4.2.eb -## source /cvmfs/software.eessi.io/versions/2025.06/init/lmod/bash -## module load EESSI-extend/2025.06-easybuild - +## please read the README within `envs` describing how to build this extending EESSI easyblock = 'Bundle' - name = 'fcps' version = '1.3.4' -versionsuffix = '-r-%(rver)s' local_biocver = '3.20' @@ -21,7 +17,7 @@ builddependencies = [('pkgconf', '2.2.0')] dependencies = [ ('R', '4.4.2'), - ('Python', '3.12.3'), + ('Python', '3.12.3'), ('Boost', '1.85.0'), # for mzR ('GSL', '2.8'), # for flowClust ('R-bundle-CRAN', '2024.11'), @@ -34,25 +30,20 @@ exts_default_options = { 'https://bioconductor.org/packages/3.20/bioc/src/contrib/Archive/%(name)s', 'https://bioconductor.org/packages/3.20/data/annotation/src/contrib/', 'https://bioconductor.org/packages/3.20/data/experiment/src/contrib/', - 'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive - 'https://cran.r-project.org/src/contrib/', # current version of packages - 'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages - 'https://bioconductor.posit.co/packages/3.20/bioc/src/contrib' + 'https://bioconductor.posit.co/packages/3.20/bioc/src/contrib', + 'https://cran.r-project.org/src/contrib/', + 'https://bioconductor.org/packages/3.20/bioc/src/contrib/Archive/%(name)s/', + 'https://cran.r-project.org/src/contrib/Archive/%(name)s/', ], 'sources': ['%(name)s_%(version)s.tar.gz'], } exts_defaultclass = 'RPackage' -# check whether correct version is installed in extension filter -# (some versions in this bundle may be newer than the ones provided by R) local_ext_version_check = "pkgver = packageVersion('%(ext_name)s'); if (pkgver != '%(ext_version)s') " local_stop_msg = "stop('%(ext_name)s %(ext_version)s not installed, found ', pkgver, ' instead')" exts_filter = ("R -q --no-save", "%s { %s }" % (local_ext_version_check, local_stop_msg)) -# CRAN packages on which these Bioconductor packages depend are available in R module on which this depends -# !! order of packages is important !! -# packages updated on 24 November 2024 exts_list = [ ('BiocGenerics', '0.52.0', { 'checksums': ['14f56a8d34dc2c005a8f07711cef22321eba92bfc5548853e8fcec03565e7fd9'], @@ -81,15 +72,6 @@ exts_list = [ ('XVector', '0.46.0', { 'checksums': ['ce261b3fda9a7ca809bdd2b92a8550de7ec9a3fd6153dc5358e12453d5d6f636'], }), - ## ('Biostrings', '2.74.0', { - ## 'checksums': ['74b3ea7dcc18d0676557364d93c2b48c76eb36e4e18553724df466326eada0fc'], - ## }), - ## ('KEGGREST', '1.46.0', { - ## 'checksums': ['0ed4e2247f04de5f15b5c9743f7ccb3f8ed2408fbe3eecffd5344f43a8355ea6'], - ## }), - ## ('AnnotationDbi', '1.68.0', { - ## 'checksums': ['ee6edacc616943e278b1ffc78bb0a44b06c3ad8ee1cf83c033d4e27b7a5df88d'], - ## }), ('GenomicRanges', '1.58.0', { 'checksums': ['10c8c13bacc3cf36fa70bc0f58916b97da36381811dac361a062a2f58a958cc5'], }), @@ -99,9 +81,6 @@ exts_list = [ ('Rhtslib', '3.2.0', { 'checksums': ['f5ef39119bbe9005b563719a879b6a341274f68fbb77e75ed946635c2b0c3225'], }), - ## ('Rsamtools', '2.22.0', { - ## 'checksums': ['25dbdcdb5a53b01014600c59f1bba5593a2e2f57ab6cb0c76660b88aaf0e1073'], - ## }), ('MatrixGenerics', '1.18.0', { 'checksums': ['b359c661e7e614495d04e82291de646ed62ded0a16389581d816e7c1f1694c8c'], }), @@ -117,234 +96,18 @@ exts_list = [ ('SummarizedExperiment', '1.36.0', { 'checksums': ['0585846f5f5f4fc316a6a10648054bcd92a09b225fb4bb00a0e965768a6dd3cd'], }), - ## ('GenomicAlignments', '1.42.0', { - ## 'checksums': ['deb84da29edd12ae7de90d93c163d2360fe809a69337cc984ef3a1052ee78af9'], - ## }), - ## ('pwalign', '1.2.0', { - ## 'checksums': ['6bfc0cda03c245b95554c1dd64534574849caae2082b7c4b7fe94b8d1eec01c4'], - ## }), - ## ('ShortRead', '1.64.0', { - ## 'checksums': ['c8a1e60472ffd8bb7dbfec6676a8bbcf894f3c3c25f21f0fc4bc6e663220137f'], - ## }), ('graph', '1.84.0', { 'checksums': ['970bec2341a1c492f5d1cfb41659d9ffaf257a43bff50715fcd0d7cbd6b2073b'], }), - ## ('affyio', '1.76.0', { - ## 'checksums': ['91154048012c076e6c467a12e686438e0d61f5faca3c90bda000ea2860cc5a05'], - ## }), - ## ('preprocessCore', '1.68.0', { - ## 'installopts': "--configure-args='--disable-threading'", - ## 'checksums': ['50d9b6c2c1e4758dd19cc11470951d7e0d60f5ba315701835bc13dc9cbf3fb62'], - ## }), - ('BiocManager', '1.30.25', { - 'checksums': ['83ef8b57dcc7350fe1e8c62590a60d3ad3e1f9c8660930c946b20340a4a81e15'], - }), - ## ('affy', '1.84.0', { - ## 'checksums': ['c39cd36c731cb82ce2ee61e151206ecc902b5d736edbb23f3db5dca8f16247f4'], - ## }), - ## ('GO.db', '3.20.0', { - ## 'checksums': ['ff968e338624697f33cc318de6af34d684c88ed019107aeebb071f6564e110dc'], - ## }), - ## ('limma', '3.62.1', { - ## 'checksums': ['ee9404341828621fb2a9e24dddc66ed4099531f61b08175f9175d942a122e408'], - ## }), + ('BiocManager', '1.30.27'), ('RBGL', '1.82.0', { 'checksums': ['88d3dee84338329016d0ccd18fb1c332b543cdccded2914dfe946fa9df3c5e13'], }), - ## ('org.Hs.eg.db', '3.20.0', { - ## 'checksums': ['8c36c3cde805cae99f1d391cf00aec8983f6d0b4fabd75e71aa8ef3f5d6ed3bf'], - ## }), - ## ('AnnotationForge', '1.48.0', { - ## 'checksums': ['f782a66fdbf5e7503b798aa06e2184f158d5ec73988d477225890f82a71c7ad4'], - ## }), - ## ('annaffy', '1.78.0', { - ## 'checksums': ['f305f903a4465ffd50f8c574c06e000a5e472e02f389273b8abf7701b98ffa6a'], - ## }), - ## ('gcrma', '2.78.0', { - ## 'checksums': ['4abf83b3bc232052191275b771c287e43d3fa10be8bf7fe32dfe9b5aab3d696c'], - ## }), - ## ('oligoClasses', '1.68.0', { - ## 'checksums': ['673d65ec706940c6ac5f5b238aa224ef5720986090701bd59766771f665eec07'], - ## }), - ## ('edgeR', '4.4.0', { - ## 'checksums': ['6712e35f54b79b960fbe7452594124f3242371199efd8ebb0b0a168b809ed140'], - ## }), - ## ('PFAM.db', '3.20.0', { - ## 'checksums': ['86abbacc940ae76447c0accbb6c09bfbb9e44f1923e0662c385ab07dd66e7045'], - ## }), - ## ('perm', '1.0-0.4', { - ## 'checksums': ['561e01793a9032b6a3676a7819fe24175eeb9e96a5314bd78b9c48d46e627be9'], - ## }), - ## ('baySeq', '2.40.0', { - ## 'checksums': ['f54f35781e8fb82718166dd5c6cd486793fbf14b6dce03b43bd54ddc9f4a176e'], - ## }), - ## ('qvalue', '2.38.0', { - ## 'checksums': ['210e0ac56fddaa6b6f5014d0c459677f163f9acf10abf6b098b62790a3533161'], - ## }), - ## ('impute', '1.80.0', { - ## 'checksums': ['ff145193a2bb3fbb4f6873213b7c53fdc2bb55ee6d11ea9414a2b0c44a4688a7'], - ## }), - ## ('shinyFiles', '0.9.3', { - ## 'checksums': ['4a72e165ee8a6e8256988f27286a2cfc4d7a42e2a902f4f2a728b1c237c07286'], - ## }), - ## ('samr', '3.0', { - ## 'checksums': ['25f88ac002c2adce8881a562241bc12d683810a05defb553e8e3d4878f037506'], - ## }), - ## ('DEGseq', '1.60.0', { - ## 'checksums': ['90f3d5e2fd866fef031e6a4c429d6196dfc02230f4533f13455a1d193bf9773e'], - ## }), - ## ('hgu133plus2.db', '3.13.0', { - ## 'checksums': ['ddde58e777a8341536a664c7d4be874a2f395f8aaa019c1f738462a8ce74cc44'], - ## }), - ## ('illuminaio', '0.48.0', { - ## 'checksums': ['ba7a6db66ab0a69924d5d98a7236d75b74a0387b38297378072b127a8c55fbb3'], - ## }), - ## ('BiocIO', '1.16.0', { - ## 'checksums': ['99868a2f80ab71ff28fceef592bffe7552fbb0338e2d027c5dbc174e218d1ab7'], - ## }), - ## ('restfulr', '0.0.15', { - ## 'checksums': ['40ff8f1fb2987af2223e1a855bb1680c5ce2143fbce7ebc42f1edb291f80e692'], - ## }), - ## ('rtracklayer', '1.66.0', { - ## 'checksums': ['6f35a3465ecd67f1b9e4904a064ea533b7ec6d2509d467e9520336a87a0e093e'], - ## }), - ## ('filelock', '1.0.3', { - ## 'checksums': ['2dcd0ec453f5ec4d96f69b0c472569d57d3c5f9956a82a48492ee02f12071137'], - ## }), - ## ('BiocFileCache', '2.14.0', { - ## 'checksums': ['6c0a463f7ef65e482b98ba02793fb9ae98b476997c916c94cd917a9e132a4022'], - ## }), - ## ('biomaRt', '2.62.0', { - ## 'checksums': ['e9243d81c38aab9f91b3228e6817573a95cf64e13a70604c7a522771e416b09b'], - ## }), - ## ('GenomicFeatures', '1.58.0', { - ## 'checksums': ['2526d42ee489d7bfccf147b441050bb56c312be351a45650b24dc0e62a34ac47'], - ## }), - ## ('bumphunter', '1.48.0', { - ## 'checksums': ['a40472da917c50687e6185e0b078ce43f1acbab5303173b9a3de327afaecb3a0'], - ## }), - ## ('multtest', '2.62.0', { - ## 'checksums': ['d3cd6e5c4ed4b19ae633b6be05bec771bc7a1d773622c59354a587335605fa01'], - ## }), - ## ('scrime', '1.3.5', { - ## 'checksums': ['5d97d3e57d8eb30709340fe572746029fd139456d7a955421c4e3aa75d825578'], - ## }), - ## ('siggenes', '1.80.0', { - ## 'checksums': ['07e78f47532d57978157d390eb3e5e756b766ee7f89f72c376fc49fa2af13e35'], - ## }), - ## ('DynDoc', '1.84.0', { - ## 'checksums': ['b528ea448d4e1dac3d766ed417a62c0921997815025ac85dbeb8959bd2d7e25f'], - ## }), - ## ('NOISeq', '2.50.0', { - ## 'checksums': ['fe3b645a683b731d2d80a458b327ec458eb75813fbae6efba18a9d8cf986280d'], - ## }), ('Rgraphviz', '2.50.0', { - ## 'patches': ['Rgraphviz-2.28.0_fno-tree-vectorize.patch'], - ## 'checksums': [ - ## {'Rgraphviz_2.50.0.tar.gz': '3730011326fd04992e07c249074c962a985e7a3ce79993c23201b79e11ba924a'}, - ## {'Rgraphviz-2.28.0_fno-tree-vectorize.patch': - ## '15783e9daba6f63c8e655858468a99e9f4f088468dbe3b414825e5844cf6b4a9'}, - ## ], - }), - ## ('RNASeqPower', '1.46.0', { - ## 'checksums': ['ab2dd42efe57bcddca34b9f7ed8d92c3bcb349348b9ee566edf66a37ff812025'], - ## }), - ## ('annotate', '1.84.0', { - ## 'checksums': ['fed0e3e8cc818091d7847ce34f920d5bdb1b69648ed01816a8bb7dae6061ecd4'], - ## }), - ## ('GSEABase', '1.68.0', { - ## 'checksums': ['367d0d9b7a61d33a781365ccce6ea81d6127eac9738b35687fc97fd1af3ca37d'], - ## }), - ## ('genefilter', '1.88.0', { - ## 'checksums': ['cd7fa6d046adbefd344a25c9ee0139713a7ef16647340628ea01145ade89b5b0'], - ## }), - ## ('Category', '2.72.0', { - ## 'checksums': ['62f2b2da396ff5eb7d67edd60830045587bebc9c0bca3371c302709da6cbc568'], - ## }), - ## ('GOstats', '2.72.0', { - ## 'checksums': ['f22f944c3db01357362b22edd07f0a0a39866e49eb13d917c80c3d28767de27f'], - ## }), - ## ('BSgenome', '1.74.0', { - ## 'checksums': ['510657a451b1b2b983bcf1b8cfa9d43a9ad15753e66bed1d134e257eb3f86c29'], - ## }), - ## ('VariantAnnotation', '1.52.0', { - ## 'checksums': ['7579f8820ec4d7974c06a74bc7d031c111367de79685479296225ba27f73f329'], - ## }), - ## ('interactiveDisplayBase', '1.44.0', { - ## 'checksums': ['2174ab1ac206e1d503f58c2b62598583f1a62a609fbda5939ab6660580dd69f0'], - ## }), + }), ('BiocVersion', '3.20.0', { 'checksums': ['9de14e40e3f085da92bc9f375ee6e1a81b8676b43882a45a3abf84faf94db6c7'], }), - ## ('AnnotationHub', '3.14.0', { - ## 'checksums': ['362279548b64dc2d075e66ed4aab14e1e996552927847708907b5e350d931cd0'], - ## }), - ## ('AnnotationFilter', '1.30.0', { - ## 'checksums': ['b6b8c84c44a1e1d4f72508606faf3e8e966ee0d5076a91d9cab1a4de3a73eea8'], - ## }), - ## ('ProtGenerics', '1.38.0', { - ## 'checksums': ['b3d2a1d36cbdae5736dffdf7df4749beb0b63149d5fae5318c51f5083ecee75d'], - ## }), - ## ('ensembldb', '2.30.0', { - ## 'checksums': ['0a78d89df51c694a09986461023ca90e9849e8c85098085ec0ece7f83da4f0dc'], - ## }), - ## ('biovizBase', '1.54.0', { - ## 'checksums': ['e6fb8ba6cfab2e5c75036e2ccbf17f1a1fdb8949c183e4aaf221a1a4e680903c'], - ## }), - ## ('txdbmaker', '1.2.0', { - ## 'checksums': ['9748c0a666d318a62e2bc4f8a0c952afb4db2005299065414f4b047eb3a70c4c'], - ## }), - ## ('OrganismDbi', '1.48.0', { - ## 'checksums': ['3d6fe5d5643d1132ebff21a583ee64e657d6734c4f04a757dc7e08cbfadd7cf5'], - ## }), - ## ('ggbio', '1.54.0', { - ## 'checksums': ['f0079f581d92a3430113a9063180a264b7b5f9ccf3ea555f716ddb2c8c5032dd'], - ## }), - ## ('geneplotter', '1.84.0', { - ## 'checksums': ['476dc1c27d76dd57983705fcb73c6f36f7873fc6a9a6f84b35d9e023143778fb'], - ## }), - ## ('DESeq2', '1.46.0', { - ## 'checksums': ['abf33acf09ac80bf82b546ac9e46e980e951e1cf7a04df2dea49b78cd0c00c58'], - ## }), - ## ('ReportingTools', '2.46.0', { - ## 'checksums': ['f4b4a02435c62fb62f05a172544140269e28f427bca75b56637152022c4be4f0'], - ## }), - ## ('Glimma', '2.16.0', { - ## 'checksums': ['ea4c82d89074f72c9320076c8d24bf75c22a45701337791da4ebc7b3169a0f4b'], - ## }), - ## ('affycoretools', '1.78.0', { - ## 'checksums': ['2e1301a50c2bae6527a5cbbe23676bf35490d0b860e55285c438eb6b24b7caf7'], - ## }), - ## ('TxDb.Hsapiens.UCSC.hg19.knownGene', '3.2.2', { - ## 'checksums': ['063de2b1174782a0b2b8ab7f04a0bdf3c43252cb67c685a9f8ef2b8e318352e9'], - ## }), - ## ('Homo.sapiens', '1.3.1', { - ## 'checksums': ['014809fc6ef6410be8dc1094c9cb083719f20d999065ae4bf388855be0913b94'], - ## }), - ## ('BSgenome.Hsapiens.UCSC.hg19', '1.4.3', { - ## 'checksums': ['5bfa65d7836449d9b30c356968497cdfaa98be48c4e329e71e8f8a120f3e9d1a'], - ## }), - ## ('AgiMicroRna', '2.56.0', { - ## 'checksums': ['b1982b7377c60ce1ec983ff15133af7de03ba92612803352277823adfe0d3df0'], - ## }), - ## ('geneLenDataBase', '1.42.0', { - ## 'checksums': ['f731cfa1ff83a38dbee104778377f1b206121144e500ba05ddba1c9e0ada43ec'], - ## }), - ## ('goseq', '1.58.0', { - ## 'checksums': ['855c83001d0b2de1fb3e85dc6289471dabbaa5267e6e902bd86bffbd09515edd'], - ## }), - ## ('KEGGgraph', '1.66.0', { - ## 'checksums': ['45f00c398d0875f23926e1cfec4a562a831a069f0cf0c2bbe67e35736e41b323'], - ## }), - ## ('GEOquery', '2.74.0', { - ## 'checksums': ['d4fe4e43496726eda6f64ec17b0af2228925639fbd16cb562acdbe4f3b439153'], - ## }), - ## ('gsignal', '0.3-7', { - ## 'checksums': ['43430b138a58237a4e416cf85069b08054c41e1cb150c37cd0ca86bec6fe13b2'], - ## }), - ## ('mixOmics', '6.30.0', { - ## 'checksums': ['ae460d85ea22913a392a168e0cc7d5ad3e2bcf536ac469aa3ea2afc7a0e45c2e'], - ## }), ('Rhdf5lib', '1.28.0'), ('rhdf5filters', '1.18.0', { 'checksums': ['6a277d569fb2929cd5e8515dde2849eeb6b82cfc86c8267caefc018157e1c8cd'], @@ -361,417 +124,13 @@ exts_list = [ ('DelayedMatrixStats', '1.28.0', { 'checksums': ['a3a1929ada54b3f00f78af0edc1cc3159b8dbeb4e56d0b2c8126a3215b5dd907'], }), - ## ('minfi', '1.52.1', { - ## 'checksums': ['b3a13303880db264c12dce391c8ab3c5a9036cbfe15fc444e23383aad9926a8d'], - ## }), - ## ('FDb.InfiniumMethylation.hg19', '2.2.0', { - ## 'checksums': ['605aa3643588a2f40a942fa760b92662060a0dfedb26b4e4cd6f1a78b703093f'], - ## }), - ## ('methylumi', '2.52.0', { - ## 'checksums': ['a49c1af3b900c37c2480c2372579905425dc97c82f15484eae66cadd70408c96'], - ## }), - ## ('lumi', '2.58.0', { - ## 'checksums': ['2b7237ed13f9b6c76b69f1214c96adcc7281430de0150428e6f7feb4d7e47591'], - ## }), - ## ('widgetTools', '1.84.0', { - ## 'checksums': ['ab5b0af8dcec3298e7146d2d596e4753848d574fe63954e41eb031cab9ed2856'], - ## }), - ## ('tkWidgets', '1.84.0', { - ## 'checksums': ['725184828cb79ab1c84237413b02b8707bb62db1bff010a9e9e19907c9e68368'], - ## }), - ## ('Mfuzz', '2.66.0', { - ## 'checksums': ['9ab4daf3ce9b2d186ad3ed3d1ffcb75feb5d71cae336ff1bcdd5fb0544832788'], - ## }), - ## ('venn', '1.12', { - ## 'checksums': ['ed86b69bd99ceea93352a30699a0baba3fd8cdcde907a9476e92be202ad8721d'], - ## }), - ## ('maSigPro', '1.78.0', { - ## 'checksums': ['cf1b8ee9633e5b8974c563836e6b8a73b1a058b133317add30c5f85eab209a8c'], - ## }), - ## ('SPIA', '2.58.0', { - ## 'checksums': ['7edaf29658f5b4240495b6d4079be23b7c3e80daf5ddffa5dd5a6785f2d45194'], - ## }), - ## ('Gviz', '1.50.0', { - ## 'checksums': ['50c5ddd5cbe62da3421ec560fcdd1a0cf95e081597ac4f11d06ed6a787174b9e'], - ## }), - ## ('cummeRbund', '2.48.0', { - ## 'checksums': ['1380ce31f9189b443b892a09cbe0e7119582647c8eb9a4f1c7ef33fe692ea08c'], - ## }), - ## ('GenomicFiles', '1.42.0', { - ## 'checksums': ['2f8792fb0c604b5d324e5c116c188a639f48194ae826c7b83e05eed7ba25d36d'], - ## }), - ## ('derfinderHelper', '1.40.0', { - ## 'checksums': ['1061707063a42ef9b22ec79ed0a16980f171c5ce28d6df34162355f36ca94033'], - ## }), - ## ('derfinder', '1.40.0', { - ## 'checksums': ['e9448253db042811a6afbee9a8f8d534ab2504b8607550f6e1163db2169de161'], - ## }), - ## ('Rsubread', '2.20.0', { - ## 'checksums': ['2323ba70f3eaa34313bfe67d3c516b2b531b32137b0cdb7cedce540d46dff7d8'], - ## }), - ## ('pcaMethods', '1.98.0', { - ## 'checksums': ['f2a8c70372683d7ea979132764149c2c24bc7b492e5798fe7499546e4e57e90a'], - ## }), - ## ('marray', '1.84.0', { - ## 'checksums': ['29298e6096096d2a2ec25796600d71671973e4de2124fdcc04247fd2d38a9048'], - ## }), - ## ('CGHbase', '1.66.0', { - ## 'checksums': ['66d97ede2119fef790875869aa13dc32bbdcd167b07355ed86164b5acc119c3d'], - ## }), - ## ('Wrench', '1.24.0', { - ## 'checksums': ['aa302792ecb568f2a783c9ad07e00d4ce6a005ed6e4267a4f20abe96ad232a94'], - ## }), - ## ('lpsymphony', '1.34.0', { - ## 'checksums': ['2439daf737271f1ab9c8f526fd03b30d65da6bec19532e65f4eae6bb85e49970'], - ## }), - ## ('IHW', '1.34.0', { - ## 'checksums': ['c662c3585f935f343ab98656471e39d019b44154215a54bb131eeae4c7e69fb7'], - ## }), - ## ('gdsfmt', '1.42.0', { - ## 'checksums': ['64ab7f1267d3ccdab37a18880c07a62a5b447e9d56c0332be9df3d018415d86a'], - ## }), - ## ('SNPRelate', '1.40.0', { - ## 'checksums': ['d66a98d4e938213c772f379f6bd677effc667bbc61c31de714e5f69f40bdfa03'], - ## }), - ## ('biomformat', '1.34.0', { - ## 'checksums': ['0e1edf05178f27c87d6d32a37b1569383e894cc0aff66f1dcf9f8d9033300228'], - ## }), - ## ('phyloseq', '1.50.0', { - ## 'checksums': ['b6ac4086a97888a9090b6218eccd1bca98bd69f4c34d5be2f52de3adc5efc468'], - ## }), - ## ('NADA', '1.6-1.1', { - ## 'checksums': ['670ff6595ba074ed0a930b7a09624d5ef20616379a20e768c1a7b37332aee44a'], - ## }), - ## ('zCompositions', '1.5.0-4', { - ## 'checksums': ['73188e1e065a042723ed7a48df04e22317b204222d40744b83e8c392aae16aaf'], - ## }), - ## ('RcppZiggurat', '0.1.6', { - ## 'checksums': ['9c78255ca476c945c05a564d1e4da363de714d890e0e27f3b252fd73c50eed71'], - ## }), - ## ('Rfast', '2.1.0', { - ## 'checksums': ['f9e46cac99db756cd49c9cd83be8adc0d381e6c03102389bfdcb8258d02418ff'], - ## }), - ## ('directlabels', '2024.1.21', { - ## 'checksums': ['bb3ba484ff9486fd8e9ce65073b69ce38e42f1fab2f42822eecfec7823f6b6fe'], - ## }), - ## ('ALDEx2', '1.38.0', { - ## 'checksums': ['ed7763091d33cd68e28c287e566244c2f58bb231c2f068572d4b14c48f8042b0'], - ## }), - ## ('dada2', '1.34.0', { - ## 'checksums': ['19f8063326aff26d1e879778e32ac4ac123e961a55f8dc489b8f9ba14beebb6d'], - ## }), - ## ('LEA', '3.18.0', { - ## 'patches': ['LEA-3.0.0_support_aarch64_and_ppc64le.patch'], - ## 'checksums': [ - ## {'LEA_3.18.0.tar.gz': 'efca69976a3f2e827341b6c237fed7232f84bdc33d6a67647bde08c2f133cc2b'}, - ## {'LEA-3.0.0_support_aarch64_and_ppc64le.patch': - ## 'caeaae7aa0577540bc9c03b54ce5a0fe4ff1a28ac503106e2b3acd1b9db82881'}, - ## ], - ## }), - ## ('tximport', '1.34.0', { - ## 'checksums': ['7432cf0e491784d581b0d83b6eb68994c690b2a6d6db3d25134eeac862a336e7'], - ## }), - ## ('SingleCellExperiment', '1.28.1', { - ## 'checksums': ['5d8e920f95fbc2ac63b63f94567beedf39017bc644f015da6e5b30f11ca45dcd'], - ## }), - ## ('assorthead', '1.0.0', { - ## 'checksums': ['669d086fb927cbac9cb87a38d750bd836381ec037eae50c345f58f337e4f1d88'], - ## }), - ## ('beachmat', '2.22.0', { - ## 'checksums': ['253ba983cfe0c2d197e1b8614135e0c59797dbfe96aa80d837c65e6e935e2a70'], - ## }), - ## ('RcppAnnoy', '0.0.22', { - ## 'checksums': ['9f2121d787c4d3e7beccdd65f5d1de81f31c99d57d5d61ca3cc5af7169dd8f65'], - ## }), - ## ('RcppHNSW', '0.6.0', { - ## 'checksums': ['a5a6ed00a84143aa62aa67df66fcccae657d5db0a1f9bb4b955a8e94c2ff580f'], - ## }), - ## ('BiocNeighbors', '2.0.0', { - ## 'checksums': ['632af6a8c68dfeee6594e965823c6aad010be058728672dfccf8a1edae8f12cd'], - ## }), - ## ('rsvd', '1.0.5', { - ## 'checksums': ['e40686b869acd4f71fdb1e8e7a6c64cd6792fc9d52a78f9e559a7176ab84e21e'], - ## }), - ## ('ScaledMatrix', '1.14.0', { - ## 'checksums': ['924b0e3b1101b67fe4736cb285f4284eefd032f70fafeba2171377b6fae57de2'], - ## }), - ## ('BiocSingular', '1.22.0', { - ## 'checksums': ['1089493b0f02b0f423c0eb5e8a8810ab4d63a18b117cb77426844be4aeead49d'], - ## }), - ## ('scuttle', '1.16.0', { - ## 'checksums': ['3b52cd64a2f9fbc24d23a479c6a57e06ef8b6dba140b6188187c54fd6e522340'], - ## }), - ## ('RcppML', '0.3.7', { - ## 'checksums': ['325c6515085527eb9123cc5e87e028547065771ed4d623048f41886ae28908c6'], - ## }), - ## ('sitmo', '2.0.2', { - ## 'checksums': ['448ef8d56e36783354011845daf33f1efb83ea3b9685eea75eaf5134e24fa8c2'], - ## }), - ## ('dqrng', '0.4.1', { - ## 'checksums': ['3d9df935020c3c2538bc712456079925c4b379d67407c83fbc008340e353288f'], - ## }), - ## ('uwot', '0.2.2', { - ## 'checksums': ['d9938c43d29530d4b36d1b2649cc679b09945a740db2cd3a266242b1aa9a6cd1'], - ## }), - ## ('ggrastr', '1.0.2', { - ## 'checksums': ['cb27406dca99cea6440adf6edb7eb53141b60322452f5a5d4409e36516ad20d1'], - ## }), - ## ('scater', '1.34.0', { - ## 'checksums': ['01c22daaf11dea43b4d6906b79b5e1baac255c3b1c7874aacb4c72115f619aac'], - ## }), - ## ('bluster', '1.16.0', { - ## 'checksums': ['dad5469a8b4360293ee42e9eaed2c93db3a6d2547db8129c2ff424217f910acd'], - ## }), - ## ('metapod', '1.14.0', { - ## 'checksums': ['145dd02370b1d63a66ccb0273a14ed205830e62c5f895ebf72c216fbbd7d4dfb'], - ## }), - ## ('scran', '1.34.0', { - ## 'checksums': ['3b7b4e1d827e79f063aed2c79b58f54106e059008c9dac4bcac89fb5cad625be'], - ## }), - ## ('SC3', '1.34.0', { - ## 'checksums': ['b14a4af72eaf0fb84b93a0701e3ca1f615fb5b297f66978684ae6ea393e06ad2'], - ## }), ('ComplexHeatmap', '2.22.0', { 'checksums': ['c0f4ba2259326ce8f3bdaaae88cc5c893f683758157f6012ba01b4004f0a4bc1'], }), - ## ('GENIE3', '1.28.0', { - ## 'checksums': ['2c1608adac41d222544833e7d0e3780a19a09d5c5c6ce19870e482f628dc8641'], - ## }), - ## ('dupRadar', '1.36.0', { - ## 'checksums': ['162ae8e98f0eb492d0276a642e4d0877e832fed6a8073c115bba0b4ef820975f'], - ## }), - ## ('DNAcopy', '1.80.0', { - ## 'checksums': ['9ac7313bd5d6ed1c11719f96b202e97548045fd01df0d267919ae585c6906bb2'], - ## }), - ## ('sva', '3.54.0', { - ## 'checksums': ['0d03a8d773599a6d089c9683ae090aa1ae0426b064e47e481f5138b3b434d86b'], - ## }), - ## ('ballgown', '2.38.0', { - ## 'checksums': ['a8fd0f7db68c83f3610e807a0e69531ecf649913664e3f3cbbbfd357728789ac'], - ## }), - ## ('DropletUtils', '1.26.0', { - ## 'checksums': ['5db6870517a2398181f9088804da8edbf5bea6cd498d137943063226ff85a918'], - ## }), - ## ('DeconRNASeq', '1.48.0', { - ## 'checksums': ['fb50e569fa617f6f1104f0b04639696eac14e64963ae0223d2086e36769b676c'], - ## }), - ## ('SpatialExperiment', '1.16.0', { - ## 'checksums': ['83a67e369642849f6f79508093be8ca6bfa6e9e67835cda92709a6a7bcf89a0a'], - ## }), - ## ('GSVA', '2.0.1', { - ## 'checksums': ['f9de660488157fdd855afa79672ee6e5ad9f6fc081a5af26ec2dff2c3e1f2838'], - ## }), - ## ('PureCN', '2.12.0', { - ## 'checksums': ['1ef89da087a265b5119e30cf8aa93c411f2d09eb555f5e4d3244bff330654478'], - ## }), - ## ('globaltest', '5.60.0', { - ## 'checksums': ['591a005d89be9259c4b941e60091002de64b3337408464aa893f6f3fad1726be'], - ## }), - ## ('GlobalAncova', '4.24.0', { - ## 'checksums': ['c0caaa1b6abc5b9ec3f4d114ed6946c4d6368c0742e951a2f21ce2cb627bafc3'], - ## }), - ## ('vsn', '3.74.0', { - ## 'checksums': ['b8d46f1dca7a515665419b087db01bcb938ef1a74c745f55a93bbe96197c0e44'], - ## }), - ## ('mzID', '1.44.0', { - ## 'checksums': ['e2be4fbb02baf8ed9f5cf74065fc95065298d7537269ca153bac06b08be1c751'], - ## }), - ## ('mzR', '2.40.0', { - ## 'checksums': ['44cfedc12fdcac3b222460caff262b682fdc4c1f646431252a1c6e48b34a0def'], - ## }), - ## ('MsCoreUtils', '1.18.0', { - ## 'checksums': ['c1aa20cecd1d4723b3f3cbb2f14e4d2205de1fd3e7d71849273c8fb4622d3634'], - ## }), ('BiocBaseUtils', '1.8.0', { 'checksums': ['5762d92ee6dce6dd6c24e6b6f05ec86d196c59b5b02c405167f38b407d77bf83'], }), - ## ('MultiAssayExperiment', '1.32.0', { - ## 'checksums': ['fe6972467e59ea286fcc3adebc0af8c7d90aad4d4691c6b74985580a38e156d3'], - ## }), - ## ('QFeatures', '1.16.0', { - ## 'checksums': ['40a7ebe05ea024a2b82bb86ef72d3a779b085d874387498ebd229db505d97f30'], - ## }), - ## ('PSMatch', '1.10.0', { - ## 'checksums': ['10b6b5f1a0a013092f2f53a341fad6a2ec52ef72949d77114b0dd8c2779b06ab'], - ## }), - ## ('MSnbase', '2.32.0', { - ## 'checksums': ['ebb9ebbb03b5dfc0b6d348f5d7b6466ea8ebf861281d7db51e9188326759d333'], - ## }), - ## ('MassSpecWavelet', '1.72.0', { - ## 'checksums': ['da996aa8c93584b47dda5812f3dd7a4bb180b562896b20e8f180cc145653ae5b'], - ## }), - ## ('MsFeatures', '1.14.0', { - ## 'checksums': ['02501d896d587d43c7a987abb114822b46f6ed9b44098278fdb9414ef78b7495'], - ## }), - ## ('MetaboCoreUtils', '1.14.0', { - ## 'checksums': ['9ac6b6bb7f299e5e0a6faab25a49a0d306358891a97e9eb34a57b25498878f3f'], - ## }), - ## ('Spectra', '1.16.0', { - ## 'checksums': ['d9df4ea1817be0cb8e97b17a85ba54d122b280c5833d239540b559cee6aa5a02'], - ## }), - ## ('MsExperiment', '1.8.0', { - ## 'checksums': ['303d51c2e5d49126817e8d031bd81b3ff3516f3eda809581fc3ed21adfe67d97'], - ## }), - ## ('xcms', '4.4.0', { - ## 'checksums': ['052e7fe38e07ed3fd1e763ea45a772f4f2a501d7cbb6fc579bdf6e9e698c3dc5'], - ## }), - ## ('CAMERA', '1.62.0', { - ## 'checksums': ['0a9c62f1f0cfa6bf4590de532a562018a5c75608ff4b89d909f72a85cd0cd32c'], - ## }), - ## ('fgsea', '1.32.0', { - ## 'checksums': ['bd7bcd5312e3452562345d9d3e8320519c52986e7598c5844c8992e76beb7b15'], - ## }), - ## ('GWASExactHW', '1.2', { - ## 'checksums': ['d3137a478338f03de52b75b3eb1b9cce135c82b81ed39fde692b1e0157ddecf7'], - ## }), - ## ('quantsmooth', '1.72.0', { - ## 'checksums': ['97441df93dc94f5015742d1dcac85af930db66b7e74926ecc11d56fcca9d345b'], - ## }), - ## ('GWASTools', '1.52.0', { - ## 'checksums': ['c4cb6dc31476d56c9f25089aa78e298563e2f2d45b04ea1c8ad733510a839989'], - ## }), - ## ('SeqArray', '1.46.0', { - ## 'checksums': ['f2adbd8c91cb9f4e31b0f7a3af1467bae787142ff6ccac96f41f2e91e7943ba8'], - ## }), - ## ('SeqVarTools', '1.44.0', { - ## 'checksums': ['366b3d443ab1022508cf96ef377fdaa7df85121748bb33874be39ca6e972dd2b'], - ## }), - ## ('GENESIS', '2.36.0', { - ## 'checksums': ['e95850c43fd213b4e9e194b683971c4ec744d942a32bc93590bb555b3717be74'], - ## }), - ## ('MLInterfaces', '1.86.0', { - ## 'checksums': ['bed0b12ea7583aa9b8eb30c1c4e33a6fe83acab933a738edc12292ab238300e4'], - ## }), - ## ('pRoloc', '1.46.0', { - ## 'checksums': ['e47569df0dc73c334007fa4897c3eacc2094187bde2fcd0df6c8ec1bfdad3e07'], - ## }), - ## ('pRolocdata', '1.44.1', { - ## 'checksums': ['20d2fa5a4437c39dd0226b588ff788d3ee9a8efe539ff4613609530114b9c906'], - ## }), - ## ('fresh', '0.2.1', { - ## 'checksums': ['5826072b9b37c683012d45e77247420a778eecdaec05947c6d507f4c3b2471a6'], - ## }), - ## ('waiter', '0.2.5', { - ## 'checksums': ['9ac25e979db9242598bd0492ff862360009b51ce672184ec9f4eeb2232164979'], - ## }), - ## ('shinydashboardPlus', '2.0.5', { - ## 'checksums': ['0bc34cd75f6df1d9c6cb8e7e98e18c5c9c4f739ef54c8d79462597dd1cf3a3cc'], - ## }), - ## ('shinyhelper', '0.3.2', { - ## 'checksums': ['f7ed62543ab4d05a34b69a9183517a09e93e1b2da85b113282de0f9982db90b0'], - ## }), - ## ('anytime', '0.3.9', { - ## 'checksums': ['1096c15249ac70997a8a41c37eeb2a6d38530621abeae05d3dcd96a8acc7574a'], - ## }), - ## ('shinyWidgets', '0.8.7', { - ## 'checksums': ['add4b4c5125c4242f6439700fce7aceec3062d1faf4c99f03eddcfab51727722'], - ## }), - ## ('pRolocGUI', '2.16.0', { - ## 'checksums': ['b43cda552ed5247e566470e4b8f04cf62f68ab1a8fe2bd74bcbc312dbe0ecc79'], - ## }), - ## ('EBImage', '4.48.0', { - ## 'checksums': ['7bb52b85129696feab6198b3cd01901efaec7a0b7e6ce5cce80ec611f45fe39a'], - ## }), - ## ('GenomicScores', '2.18.0', { - ## 'checksums': ['e6076c7ee0a0ea0e8583c29d66ada1da1b82a1dd00eb6b8a0316f703d9fc2ead'], - ## }), - ## ('BSgenome.Mmusculus.UCSC.mm10', '1.4.3', { - ## 'checksums': ['dcf602bf9fadf1ef4ce70e0c0fc92b6435467df5affe7d0872d88a93b99ff9ee'], - ## }), - ## ('TxDb.Mmusculus.UCSC.mm10.knownGene', '3.10.0', { - ## 'checksums': ['696281749d01737c94894564d62093433045bc007a4528cc3d94f205edb54977'], - ## }), - ## ('regioneR', '1.38.0', { - ## 'checksums': ['5ef53ebc2c26bcd4214d1cc5ff25e55f1a533358e9a8606e081a37eb24e54688'], - ## }), - ## ('InteractionSet', '1.34.0', { - ## 'checksums': ['780a13482eea0b7e7b0be2ca0bd9cb95c5c01630cdab53c160fc41484cbbbb96'], - ## }), - ## ('universalmotif', '1.24.2', { - ## 'checksums': ['1f24755a5e9d490029f3027c10390f4bca4d33ada83151cadded290347e4920f'], - ## }), - ## ('ChIPpeakAnno', '3.40.0', { - ## 'checksums': ['8969da57b0feb258870b92af9ea278c95a1aca549d23cdbf684651126daef77f'], - ## }), - ## ('seqLogo', '1.72.0', { - ## 'checksums': ['9c7378169b4225c0b54fdd61053ae5b19bcb69849ac918f944e36bda5cb3b828'], - ## }), - ## ('rGADEM', '2.54.0', { - ## 'checksums': ['1ead24644d4c822b9c80f97f898601dee87121802eeb6fbaa49da96149e09a51'], - ## }), - ## ('MotifDb', '1.48.0', { - ## 'checksums': ['680942ef538b41afbbf6620a6fb306b878d10c7fdd957cbd4e671dc88e48f82d'], - ## }), - ## ('poweRlaw', '0.80.0', { - ## 'checksums': ['713556af1f47e1de749670d08f963688908cfa80e9dfda590efd1a28441772cb'], - ## }), - ## ('CNEr', '1.42.0', { - ## 'checksums': ['879570f5cb7e7b56a6a5f4f1b2595cb98c26fece3b9d36da7d5ee7bbcb5b9038'], - ## }), - ## ('DirichletMultinomial', '1.48.0', { - ## 'checksums': ['3c18f9de13ab0c4bab3fa463fa2d876ff1461c2ab2b049a85c0ab0167f681cb2'], - ## }), - ## ('TFMPvalue', '0.0.9', { - ## 'checksums': ['b9db56e75e2cee840d8b7861686dec07ee2c40cbc7d55361e5d04f1bf0c65de7'], - ## }), - ## ('TFBSTools', '1.44.0', { - ## 'checksums': ['2c35c71631d0d46545378562889c36719a45e678a508fea28b17c4b1299d3889'], - ## }), - ## ('motifStack', '1.50.0', { - ## 'checksums': ['dd1265381615f33e8c16cd1a17adac908e1c0c84e1e94f5848e49eb9e5037b72'], - ## }), - ## ('ATACseqQC', '1.30.0', { - ## 'checksums': ['cbe17dfb9fc5d4afa296092380df853b16816d2ff16bc66835fe23f95d521389'], - ## }), - ## ('ResidualMatrix', '1.16.0', { - ## 'checksums': ['2209f7c2d200e32b87acf222f9aa25cb4e3938cfc30a19a42c3d7c68e0fcaa4f'], - ## }), - ## ('batchelor', '1.22.0', { - ## 'checksums': ['42d4f7d7266ebb842ca8cbaa1be0b9fa5eca01ea94007388cc47502998e0c350'], - ## }), - ## ('gsmoothr', '0.1.7', { - ## 'checksums': ['b75ffd2a4a0f357762e02e46e355b45cc90ea637830f0a1b01f216bb4541e903'], - ## }), - ## ('R.devices', '2.17.2', { - ## 'checksums': ['403eeaf552dd696142096973dee3460dc52c19b73fd194841dd4638e2bdcec95'], - ## }), - ## ('R.filesets', '2.15.1', { - ## 'checksums': ['08f5e9269b4f5ffb86f9a369fba792d864240d5f5c02dab435007b53ee989de3'], - ## }), - ## ('aroma.light', '3.36.0', { - ## 'checksums': ['cdb1de1e5b5cf551369102cbc832c7df1efd286982cd79a9d87f9e54655d2259'], - ## }), - ## ('PSCBS', '0.67.0', { - ## 'checksums': ['2695d18d197a3bd729cca0940248ddc1880e4f54da95b9ecc5eda002a715cdbe'], - ## }), - ## ('aroma.core', '3.3.1', { - ## 'checksums': ['fa26bca509750eb44e85cae2d78b03870c003d4f7e0360977e924a7838805e44'], - ## }), - ## ('R.huge', '0.10.1', { - ## 'checksums': ['05cb1edaaa0ad120c2946a80405c8c8da6a778873f08ff203391452527786ce8'], - ## }), - ## ('aroma.apd', '0.7.0', { - ## 'checksums': ['9d60ead247edb7bf8d172f14881222adda0893a693f997b0da00c29cfd37d1f6'], - ## }), - ## ('aroma.affymetrix', '3.2.2', { - ## 'checksums': ['18e1c9479e3e41bdfff06769d0ff2d85fcae16042cfd0eefa4dbcd0c4f3c9c40'], - ## }), - ## ('Repitools', '1.52.0', { - ## 'checksums': ['d997f4b1299e429f987454a22ac04442fac1cb34dd7a9d18dade9e2d644b795d'], - ## }), - ## ('BSgenome.Hsapiens.UCSC.hg38', '1.4.5', { - ## 'checksums': ['b49277e4fd955be76571f187630993b02a459c7c5b69ef62a01a75dd5226e952'], - ## }), - ## ('MEDIPS', '1.58.0', { - ## 'checksums': ['f751f1deca6af63d86d2e133d9964fa220c0b3112dde25bd9ed7ca1bb338c549'], - ## }), ('RProtoBufLib', '2.18.0', { - ## 'patches': ['RProtoBufLib-2.8.0_fix-protobuf-build.patch'], - ## 'checksums': [ - ## {'RProtoBufLib_2.18.0.tar.gz': '4f308fa04cc1b6c63536816e77557ce7c06a1e54ecd9fff35edd61d3b53024e5'}, - ## {'RProtoBufLib-2.8.0_fix-protobuf-build.patch': - ## '8775d74e2288000c57575f4ef45a875b4a377ac02f89efa947699ea786bedf64'}, - ## ], }), ('cytolib', '2.18.0', { 'checksums': ['1b1f6e145a81527087411ab7d241ebf5bfb1cd4f8e965c2c59bfa62dea6d7ab9'], @@ -779,42 +138,12 @@ exts_list = [ ('flowCore', '2.18.0', { 'checksums': ['b2a3fa3788c39b628d5dbb2e322260e5056b63c2e2c1d2f57582d92423a77d7d'], }), - ## ('mutoss', '0.1-13', { - ## 'checksums': ['b60f6fcdce44dc60c7d34c6510047f756f1442366a3566661b22aae12f4ff141'], - ## }), - ## ('qqconf', '1.3.2', { - ## 'checksums': ['9405d627adf9447a003e14dac43701ea3e03ee73244038aa4a6e3dd324dd8ea3'], - ## }), - ## ('metap', '1.11', { - ## 'checksums': ['34e8c9fc3ccaae23f57389001987de02339416f843084869f92ff635052093b7'], - ## }), - ## ('scattermore', '1.2', { - ## 'checksums': ['5534a87b0bdd1375f0fbffc1a5c980ad64e33a108435a67469b8324b580602d1'], - ## }), - ## ('SeuratObject', '5.0.2', { - ## 'checksums': ['ded30d21f445b7e353fe4a0c4954d45ad19fbe162615d9addf6732f9318ba0cf'], - ## }), - ## ('Seurat', '5.1.0', { - ## 'checksums': ['adcfb43d7a8cc55eaa7a0954a082ac95e14059a82901913379bfec115e224d59'], - ## }), - ## ('ALL', '1.48.0', { - ## 'checksums': ['5dc9a555e8a751553905b069787874c8447e79d10970647c809ee6334183472e'], - ## }), - ## ('ConsensusClusterPlus', '1.70.0', { - ## 'checksums': ['ebe96f96e99c86c65df4e18326f8eef85689f38c912519a2efa32578a894991a'], - ## }), ('flowViz', '1.70.0', { 'checksums': ['dcb4be0d2f50b9fea0700d9d46f4bedd1b512644e586f3aad52567ad7ee9b8fa'], }), ('ncdfFlow', '2.52.0', { 'checksums': ['e597999803614687e5ff921658a4bd6e2051728a5694a60301123692d4ccb299'], }), - ## ('aws.signature', '0.6.0', { - ## 'checksums': ['f7fe4f686979be21e5a8ba7ae11f0fade4f5aaf4e98063b5349ee0962dbb9496'], - ## }), - ## ('aws.s3', '0.3.21', { - ## 'checksums': ['bd21054ab63555d294e7465dcb6c86f107db52ba841aeac5bdf4d00af0674c8c'], - ## }), ('flowWorkspace', '4.18.0', { 'checksums': ['2716029899253fee6f7275e19e2c1761e389a49c2655a5557934e7aaff1c4e56'], }), @@ -840,558 +169,6 @@ exts_list = [ 'installopts': "--configure-args='--with-gsl=${EBROOTGSL} --enable-bundled-gsl=false'", 'checksums': ['2333d80a796cd633caf2db2ccd2ba045e14d805dd0fcfa312f760b341fdb2952'], }), - ## ('openCyto', '2.18.0', { - ## 'checksums': ['3cd6fbf5fed3da2ec60d9c18373effc66595d51625f5782860940c2acbdec51e'], - ## }), - ## ('ggcyto', '1.34.0', { - ## 'checksums': ['73b169e8584b3f61a342763af2864fd2f2a330f6539d935d974d2062c6a2e428'], - ## }), - ## ('CytoML', '2.18.0', { - ## 'checksums': ['c31086008f097414a98df29605d354bb19785e73102d1be0db4f3e91a8d1390d'], - ## }), - ## ('colorRamps', '2.3.4', { - ## 'checksums': ['3cdf311123ea1924ee1446b9b5bd7aa3282ca00addb6e7181f98578eb6b18ff8'], - ## }), - ## ('ggnewscale', '0.5.0', { - ## 'checksums': ['b7f0dcb38d0e8cb4179d92f38b20489905ceb2a9602b68e2c72997d795c4df2d'], - ## }), - ## ('ggpointdensity', '0.1.0', { - ## 'checksums': ['3ea646cf183c8bf7869b122a4ee972b53709056ff443ea71551b823524092a31'], - ## }), - ## ('FlowSOM', '2.14.0', { - ## 'checksums': ['3b3b50c784af7fb4ad849250c9b006e3e62e7a570903ff39e8dad4707b13be05'], - ## }), - ## ('HMMcopy', '1.48.0', { - ## 'checksums': ['653ecab206c0ce15ff5e096d702ed5010b0d55782a8befdd438441cbc4eb3099'], - ## }), - ## ('diffcyt', '1.26.0', { - ## 'checksums': ['667ef42eb549bcc7d10d824ce7915d9e92ce711e593b747d4cdc50fc13034d6e'], - ## }), - ## ('blme', '1.0-6', { - ## 'checksums': ['0608978044a00d0baaf09a694dc6edeac59dbfa373c4548e4ebbe335345c173e'], - ## }), - ## ('remaCor', '0.0.18', { - ## 'checksums': ['57e4ffba44392f300525b18db36a44437a6fafce38a06eff065f5482e4171631'], - ## }), - ## ('fANCOVA', '0.6-1', { - ## 'checksums': ['c3ea3640d9a87abbfeae713141d606ece93bc88b9952f41a37b3f1fbe802bc12'], - ## }), - ## ('variancePartition', '1.36.2', { - ## 'checksums': ['b1ad6aedb7a318a824fdd241e15526e3c0ac30c7e9671b93fc3f9baaf866ddcc'], - ## }), - ## ('muscat', '1.20.0', { - ## 'checksums': ['83ad4e39a1424855dc8b6290249bcdd9c92ac58a83b770aab2ba11b0698a7612'], - ## }), - ## ('IlluminaHumanMethylation450kmanifest', '0.4.0', { - ## 'checksums': ['41b2e54bac3feafc7646fe40bce3aa2b92c10871b0a13657c5736517792fa763'], - ## }), - ## ('IlluminaHumanMethylationEPICmanifest', '0.3.0', { - ## 'checksums': ['e39a69d98486cec981e97c56f45bbe47d2ccb5bbb66a1b16fa0685575493902a'], - ## }), - ## ('IlluminaHumanMethylation450kanno.ilmn12.hg19', '0.6.1', { - ## 'checksums': ['3627d75a6303f4d307fa6daf0c5afd57649c60a268b3d4be7e8ac8edc4b1e288'], - ## }), - ## ('IlluminaHumanMethylationEPICanno.ilm10b2.hg19', '0.6.0', { - ## 'checksums': ['4decdbc78a6a8d02bf8aecb0d6e1d81134ae9dbc2375add52574f07829e8cd69'], - ## }), - ## ('IlluminaHumanMethylationEPICanno.ilm10b4.hg19', '0.6.0', { - ## 'checksums': ['2c8128126b63e7fa805a5f3b02449367dca9c3be3eb5f6300acc718826590719'], - ## }), - ## ('conumee', '1.40.0', { - ## 'checksums': ['e01d29835612f6005d282e5b128be155643c12e4c80df809255b6e9ca545c6cb'], - ## }), - ## ('BSgenome.Cfamiliaris.UCSC.canFam3', '1.4.0', { - ## 'checksums': ['99c55b6f7808822a3dae6679e60ecfb88a2b618159484bc35303c000bd4820c7'], - ## }), - ## ('ExperimentHub', '2.14.0', { - ## 'checksums': ['24cb4dfa6cb7900c28c58469c1a513116e026fcf2f6f2ff096443a670bc25cfd'], - ## }), - ## ('SingleR', '2.8.0', { - ## 'checksums': ['d316663709f186fef34eb115f81f1426fab2bbcf042fe84b496bd90e41e78ab6'], - ## }), - ## ('FlowSorted.Blood.EPIC', '2.10.0', { - ## 'checksums': ['ba8330a102faeb317c3385decc7a7e7576150237617dad7fadc86492dfea05ff'], - ## }), - ## ('FlowSorted.CordBloodCombined.450k', '1.22.0', { - ## 'checksums': ['3d5d9ff305c315a227b13ec00c0f7a94ec180d10c1deb4bf1757a919a7b0f096'], - 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- ('mclust', '6.1.1', { 'checksums': ['ddd7018e5e6ea7f92c7fc9872b391491b7e91c2cd89ef1dcaf4408afb5116775'], }), @@ -1545,4 +320,4 @@ sanity_check_paths = { 'dirs': ['FCPS'] } -moduleclass = 'bio' \ No newline at end of file +moduleclass = 'bio'