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@CellMigStandOrg Cell Migration Standardisation Organization

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    13 repositories

    • biotracks

      Public
      A repository for data package representation for cell tracking data
      trackingdataopensharingmigrationcell
      Python
      •
      BSD 2-Clause "Simplified" License
      •9•12•6•0•Updated Apr 30, 2020Apr 30, 2020

    • ISAcreator-MIACME

      Public
      A package of the ISAcreator tool including the ISA-Tab MIACME configurations, i.e. templates to build MIACME-compliant metadata in ISAcreator.
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Apr 8, 2020Apr 8, 2020

    • MIACME

      Public
      Repository for the Minimum Information About Cell Migration Experiments
      cell-migrationminimum-reporting-guidelinesmiacme-specifications
      Rich Text Format
      •
      BSD 2-Clause "Simplified" License
      •3•2•1•0•Updated Apr 8, 2020Apr 8, 2020

    • CMSO-datasets

      Public
      Metadata for curated CMSO datasets
      metadata-filesdatasetscell-migration
      Python
      •
      BSD 2-Clause "Simplified" License
      •7•2•0•1•Updated Apr 8, 2020Apr 8, 2020

    • CMSO-training

      Public
      Training material for the CMSO formats & API
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •2•0•0•0•Updated Apr 8, 2020Apr 8, 2020

    • cellmigstandorg.github.io

      Public
      Main CMSO website
      jekyllwebsitecell-migration
      CSS
      •2•2•0•0•Updated Aug 13, 2019Aug 13, 2019

    • CMSO-samples

      Public
      Sample data submitted to CMSO for testing
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •5•1•0•0•Updated Nov 29, 2018Nov 29, 2018

    • REPO

      Public
      CellMigration Data Repository
      Perl
      •1•0•0•0•Updated Jul 4, 2018Jul 4, 2018

    • essen-dataset-analysis

      Public
      Analytical pipeline run against the cell migration data collecting at the Essen Workshop
      MATLAB
      •0•0•0•0•Updated Feb 23, 2018Feb 23, 2018

    • Tracks

      Public
      Repository for Tracks specification
      tabular-dataspecificationtracks
      CSS
      •3•0•3•0•Updated Apr 20, 2017Apr 20, 2017

    • data_package

      Public
      A repo for a data package representation of cell tracking data files
      Jupyter Notebook
      •0•0•0•0•Updated Dec 12, 2016Dec 12, 2016

    • CMEO

      Public
      Repository for the Cell Migration Experiment-driven Ontology
      0•0•0•0•Updated Sep 5, 2016Sep 5, 2016

    • Positions

      Public
      Test repository for specifying simple position files
      3•0•0•0•Updated Jun 8, 2016Jun 8, 2016