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Transfer ty rep plots to fluoressential
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ezplot/plot_numericals.py

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@@ -236,32 +236,6 @@ def main():
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palette = ["#8069EC", "#EA822C"]
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plot_crty(fig_fp, crty_df, class_labels, xlabel=xlabel, ylabel=ylabel, figsize=(24, 20), lsizes=lsizes, ylim=ylim, xlog=True, leg_loc="upper left", palette=palette)
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## Plot Each Rep ##
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class_dps = [
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"/home/phuong/data/phd-project/1--biosensor/0--ddFP/",
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"/home/phuong/data/phd-project/1--biosensor/1--LOV/0--I427V/",
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"/home/phuong/data/phd-project/1--biosensor/1--LOV/1--V416I/",
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"/home/phuong/data/phd-project/1--biosensor/2--intensity/0--LOVfast-BL20uW/",
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"/home/phuong/data/phd-project/1--biosensor/2--intensity/1--LOVfast-BL200uW/",
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"/home/phuong/data/phd-project/1--biosensor/3--iLID/0--I427V/",
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"/home/phuong/data/phd-project/1--biosensor/3--iLID/1--V416I/",
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"/home/phuong/data/phd-project/1--biosensor/4--linker/0--iLIDslow-13AA/",
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"/home/phuong/data/phd-project/1--biosensor/4--linker/1--iLIDslow-20AA/",
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"/home/phuong/data/phd-project/1--biosensor/5--decoder/0--sparse-ddFP/",
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]
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for class_dp in [Path(dp) for dp in class_dps]:
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for rep_dp in [dp for dp in natsorted(class_dp.glob("*")) if dp.is_dir()]:
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y_csv_fp = rep_dp / "results" / "y.csv"
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ty_df = pd.read_csv(y_csv_fp)
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ty_df = calc_dF_F0(ty_df)
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ty_df["c"] = np.zeros(len(ty_df), dtype=int)
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class_labels = ["y"]
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xlabel = "Time (s)"
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ylabel = r"$\mathbf{\Delta F/F_{0}}$"
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palette = ["#8069EC"]
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fig_fp = rep_dp / "results" / "y.png"
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plot_crty(fig_fp, ty_df, class_labels, xlabel=xlabel, ylabel=ylabel, tu_df=None, palette=palette)
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## Figure 2C ##
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fig_fp = "/home/phuong/data/phd-project/figures/fig_2c.png"
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class_dps = [

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