From 3b905f7189b1254cfcce6caf345ed8ba003f006e Mon Sep 17 00:00:00 2001
From: Russell Poldrack <poldrack@gmail.com>
Date: Fri, 24 Jan 2025 11:01:46 -0800
Subject: [PATCH] updating docs

---
 docs/index.html                               |   54 +-
 docs/lab_volunteers.html                      |   54 +-
 .../{computing.html => etiquette.html}        |   82 +-
 .../sherlock/access-and-resources.html        |  946 +++++++++++++++
 .../computing/sherlock/data-management.html   |  933 +++++++++++++++
 .../computing/sherlock/job-submission.html    | 1029 +++++++++++++++++
 .../labguide/environment/code_of_conduct.html |   54 +-
 docs/labguide/environment/expectations.html   |   54 +-
 .../labguide/environment/lab_environment.html |   54 +-
 docs/labguide/environment/survey.html         |   54 +-
 .../environment/work_life_balance.html        |   54 +-
 .../environment/working_remotely.html         |   54 +-
 docs/labguide/funding/funding.html            |   54 +-
 docs/labguide/general_lab_policies.html       |   54 +-
 docs/labguide/index.html                      |   54 +-
 docs/labguide/mentoring/mentoring.html        |   63 +-
 docs/labguide/mission_statement.html          |   54 +-
 .../publication/addressing_errors.html        |   54 +-
 docs/labguide/publication/authorship.html     |   54 +-
 docs/labguide/publication/conferences.html    |   54 +-
 docs/labguide/publication/openaccess.html     |   54 +-
 .../publication/science_communication.html    |   54 +-
 docs/labguide/research/code_management.html   |   66 +-
 docs/labguide/research/coding_standards.html  |   54 +-
 .../research/data_analysis_procedures.html    |   54 +-
 docs/labguide/research/data_management.html   |   54 +-
 docs/labguide/research/documentation.html     |   54 +-
 docs/labguide/research/human_subjects.html    |   56 +-
 .../research/intellectual_property.html       |   54 +-
 docs/labguide/research/preregistration.html   |   54 +-
 docs/labguide/research/research.html          |   54 +-
 .../research/statistical_methods.html         |   54 +-
 docs/people.html                              |   56 +-
 docs/positions.html                           |   54 +-
 docs/projects.html                            |   54 +-
 docs/publications.html                        |   56 +-
 docs/research_subjects.html                   |   54 +-
 docs/search.json                              |  798 +++++++------
 docs/software.html                            |   56 +-
 docs/talks.html                               |   54 +-
 docs/volunteer.html                           |   54 +-
 people.yml                                    |    2 +
 42 files changed, 5128 insertions(+), 635 deletions(-)
 rename docs/labguide/computing/{computing.html => etiquette.html} (89%)
 create mode 100644 docs/labguide/computing/sherlock/access-and-resources.html
 create mode 100644 docs/labguide/computing/sherlock/data-management.html
 create mode 100644 docs/labguide/computing/sherlock/job-submission.html

diff --git a/docs/index.html b/docs/index.html
index 707b1c5..1f6b764 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="./labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="./labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="./labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/lab_volunteers.html b/docs/lab_volunteers.html
index 902be4f..74d94bd 100644
--- a/docs/lab_volunteers.html
+++ b/docs/lab_volunteers.html
@@ -231,21 +231,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="./labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="./labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -304,13 +344,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="./labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/computing/computing.html b/docs/labguide/computing/etiquette.html
similarity index 89%
rename from docs/labguide/computing/computing.html
rename to docs/labguide/computing/etiquette.html
index 4aea704..6ba471d 100644
--- a/docs/labguide/computing/computing.html
+++ b/docs/labguide/computing/etiquette.html
@@ -89,7 +89,7 @@
       <button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" role="button" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
         <i class="bi bi-layout-text-sidebar-reverse"></i>
       </button>
-        <nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../../labguide/mission_statement.html">Lab guide</a></li><li class="breadcrumb-item"><a href="../../labguide/computing/computing.html">Computing</a></li></ol></nav>
+        <nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../../labguide/mission_statement.html">Lab guide</a></li><li class="breadcrumb-item"><a href="../../labguide/computing/etiquette.html">Computing</a></li><li class="breadcrumb-item"><a href="../../labguide/computing/etiquette.html">Computing</a></li></ol></nav>
         <a class="flex-grow-1" role="navigation" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">      
         </a>
       <button type="button" class="btn quarto-search-button" aria-label="Search" onclick="window.quartoOpenSearch();">
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link active">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link active">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
@@ -365,18 +405,18 @@
     <h2 id="toc-title">On this page</h2>
    
   <ul>
-  <li><a href="#computer-security" id="toc-computer-security" class="nav-link active" data-scroll-target="#computer-security">Computer security</a></li>
-  <li><a href="#shared-computing-platforms" id="toc-shared-computing-platforms" class="nav-link" data-scroll-target="#shared-computing-platforms">Shared computing platforms</a>
+  <li><a href="#computer-security" id="toc-computer-security" class="nav-link active" data-scroll-target="#computer-security"><span class="header-section-number">1</span> Computer security</a></li>
+  <li><a href="#shared-computing-platforms" id="toc-shared-computing-platforms" class="nav-link" data-scroll-target="#shared-computing-platforms"><span class="header-section-number">2</span> Shared computing platforms</a>
   <ul class="collapse">
-  <li><a href="#shared-computing-etiquette" id="toc-shared-computing-etiquette" class="nav-link" data-scroll-target="#shared-computing-etiquette">Shared computing etiquette</a></li>
+  <li><a href="#shared-computing-etiquette" id="toc-shared-computing-etiquette" class="nav-link" data-scroll-target="#shared-computing-etiquette"><span class="header-section-number">2.1</span> Shared computing etiquette</a></li>
   </ul></li>
   </ul>
-<div class="toc-actions"><ul><li><a href="https://github.com/poldracklab/poldracklab.github.io/edit/main/labguide/computing/computing.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/poldracklab/poldracklab.github.io/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></nav>
+<div class="toc-actions"><ul><li><a href="https://github.com/poldracklab/poldracklab.github.io/edit/main/labguide/computing/etiquette.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/poldracklab/poldracklab.github.io/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></nav>
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+<header id="title-block-header" class="quarto-title-block default"><nav class="quarto-page-breadcrumbs quarto-title-breadcrumbs d-none d-lg-block" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../../labguide/mission_statement.html">Lab guide</a></li><li class="breadcrumb-item"><a href="../../labguide/computing/etiquette.html">Computing</a></li><li class="breadcrumb-item"><a href="../../labguide/computing/etiquette.html">Computing</a></li></ol></nav>
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 <h1 class="title">Computing</h1>
 </div>
@@ -395,20 +435,20 @@ <h1 class="title">Computing</h1>
 </header>
 
 
-<section id="computer-security" class="level2">
-<h2 class="anchored" data-anchor-id="computer-security">Computer security</h2>
+<section id="computer-security" class="level2" data-number="1">
+<h2 data-number="1" class="anchored" data-anchor-id="computer-security"><span class="header-section-number">1</span> Computer security</h2>
 <p>Any servers managed by lab members for research purposes must meet the <a href="https://uit.stanford.edu/guide/securitystandards/cookbooks">Stanford Minimum Security Standards</a>.</p>
 </section>
-<section id="shared-computing-platforms" class="level2">
-<h2 class="anchored" data-anchor-id="shared-computing-platforms">Shared computing platforms</h2>
+<section id="shared-computing-platforms" class="level2" data-number="2">
+<h2 data-number="2" class="anchored" data-anchor-id="shared-computing-platforms"><span class="header-section-number">2</span> Shared computing platforms</h2>
 <p>We use two primary shared computing platforms:</p>
 <ul>
 <li><a href="https://srcc.stanford.edu/">Stanford Research Computing Center</a></li>
 <li><a href="https://www.tacc.utexas.edu/">Texas Advanced Computing Center</a></li>
 </ul>
 <p>The decision regarding which platform to use will depend upon the specific needs of the project, and can be discussed with Dr.&nbsp;Poldrack or other experienced researchers in the lab.</p>
-<section id="shared-computing-etiquette" class="level3">
-<h3 class="anchored" data-anchor-id="shared-computing-etiquette">Shared computing etiquette</h3>
+<section id="shared-computing-etiquette" class="level3" data-number="2.1">
+<h3 data-number="2.1" class="anchored" data-anchor-id="shared-computing-etiquette"><span class="header-section-number">2.1</span> Shared computing etiquette</h3>
 <p>Lab members should follow good shared computing etiquette:</p>
 <ul>
 <li>Never run a computing job on the login node
@@ -427,7 +467,7 @@ <h3 class="anchored" data-anchor-id="shared-computing-etiquette">Shared computin
 <ul>
 <li>If you encounter a problem that is not documented in the lab’s internal documentation, then add it to the documentation once you have solved it</li>
 <li>If you encounter an error in the documentation, then flag it and/or fix it</li>
-<li>You can refer to <a href="https://www.sherlock.stanford.edu/docs/overview/introduction/">this website</a> for more information on Sherlock, and if you have any further questions you can contact the Sherlock admis via email/Slack or meet during specific Office Hours as specified<a href="https://www.sherlock.stanford.edu/docs/overview/introduction/#office-hours">here</a>.</li>
+<li>You can refer to <a href="https://www.sherlock.stanford.edu/docs/overview/introduction/">this website</a> for more information on Sherlock, and if you have any further questions you can contact the Sherlock admins via email/Slack or meet during specific Office Hours as specified<a href="https://www.sherlock.stanford.edu/docs/overview/introduction/#office-hours">here</a>.</li>
 </ul></li>
 <li>Each TACC system has its own dedicated user guide that provides substantial information about how to use the system.</li>
 <li>Users of shared systems should clean up directories as projects are completed, removing intermediate files that are not necessary to keep. The storage of redundant data should be avoided, except where required for backups.</li>
@@ -863,7 +903,7 @@ <h3 class="anchored" data-anchor-id="shared-computing-etiquette">Shared computin
 </div>   
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+    <div class="toc-actions d-sm-block d-md-none"><ul><li><a href="https://github.com/poldracklab/poldracklab.github.io/edit/main/labguide/computing/etiquette.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/poldracklab/poldracklab.github.io/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></div>
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diff --git a/docs/labguide/computing/sherlock/access-and-resources.html b/docs/labguide/computing/sherlock/access-and-resources.html
new file mode 100644
index 0000000..18a3e81
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+
+
+
+
+<section id="access-and-resources" class="level2">
+<h2 class="anchored" data-anchor-id="access-and-resources">Access and resources</h2>
+<p>This section describes getting initial access to Sherlock and monitoring available resources.</p>
+<section id="compute-basics" class="level3">
+<h3 class="anchored" data-anchor-id="compute-basics">Compute basics</h3>
+<section id="acquiring-an-account-and-logging-in" class="level4">
+<h4 class="anchored" data-anchor-id="acquiring-an-account-and-logging-in">Acquiring an account and logging in</h4>
+<p>If you are a new member of a lab at stanford, you will need to have your PI email Sherlock’s support to get your SUNet account configured for use with computing resources. See the <a href="https://www.sherlock.stanford.edu/docs/getting-started/#prerequisites">Sherlock getting started guide</a> for details.</p>
+<p>Once you have an account set up with your SUNet ID <code>&lt;username&gt;</code>, you can access Sherlock via any SSH client client. If you are using a UNIX-like system (e.g., MacOS) and you are using terminal to connect to sherlock, a useful resource is to set up an ssh config file. You can do this by editing or creating the file <code>~/.ssh/config</code>, and adding the following lines:</p>
+<div class="code-with-filename">
+<div class="code-with-filename-file">
+<pre><strong>~/.ssh/config</strong></pre>
+</div>
+<div class="sourceCode" id="cb1" data-filename="~/.ssh/config"><pre class="sourceCode default code-with-copy"><code class="sourceCode default"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a>Host sherlock</span>
+<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a>    HostName login.sherlock.stanford.edu</span>
+<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a>    User &lt;username&gt;</span>
+<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a>    KexAlgorithms +diffie-hellman-group-exchange-sha1</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+</div>
+<p>Navigating to terminal, you can login to Sherlock using:</p>
+<div class="sourceCode" id="cb2"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="ex">$</span> ssh sherlock</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p>and then follow the remainder of the instructions <a href="https://www.sherlock.stanford.edu/docs/getting-started/connecting/#credentials">Sherlock connection guide</a>.</p>
+</section>
+<section id="storage-monitoring" class="level4">
+<h4 class="anchored" data-anchor-id="storage-monitoring">Storage Monitoring</h4>
+<p>The Stanford filesystems have fixed allocations for individuals and groups. As such, it will be useful for you to be able to determine how much space you/the group have, so that you can optimally manage your resources. For extended details on storage with Sherlock, check out <a href="https://www.sherlock.stanford.edu/docs/storage/#quotas-and-limits">Sherlock storage guide</a>.</p>
+<p>There are several commands that we find extremely useful for working on Sherlock. We will go over several of them.</p>
+<p>Sherlock has fixed allocations for the storage of individuals and groups. As such, you will be required to properly manage your storage allocations, re-allocating data to group-level directories as necessary.</p>
+<p>To check your quotas for your group <code>&lt;groupname&gt;</code>, you can use the <code>sh_quota</code> command:</p>
+<div class="sourceCode" id="cb3"><pre class="sourceCode default code-with-copy"><code class="sourceCode default"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a>$ sh_quota</span>
+<span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a>+---------------------------------------------------------------------------+</span>
+<span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a>| Disk usage for user &lt;username&gt; (group: &lt;groupname&gt;)                       |</span>
+<span id="cb3-4"><a href="#cb3-4" aria-hidden="true" tabindex="-1"></a>+---------------------------------------------------------------------------+</span>
+<span id="cb3-5"><a href="#cb3-5" aria-hidden="true" tabindex="-1"></a>|   Filesystem |  volume /   limit                  | inodes /  limit       |</span>
+<span id="cb3-6"><a href="#cb3-6" aria-hidden="true" tabindex="-1"></a>+---------------------------------------------------------------------------+</span>
+<span id="cb3-7"><a href="#cb3-7" aria-hidden="true" tabindex="-1"></a>          HOME |   9.4GB /  15.0GB [||||||     62%] |      - /      - (  -%)</span>
+<span id="cb3-8"><a href="#cb3-8" aria-hidden="true" tabindex="-1"></a>    GROUP_HOME | 562.6GB /   1.0TB [|||||      56%] |      - /      - (  -%)</span>
+<span id="cb3-9"><a href="#cb3-9" aria-hidden="true" tabindex="-1"></a>       SCRATCH |  65.0GB / 100.0TB [            0%] | 143.8K /  20.0M (  0%)</span>
+<span id="cb3-10"><a href="#cb3-10" aria-hidden="true" tabindex="-1"></a> GROUP_SCRATCH | 172.2GB / 100.0TB [            0%] |  53.4K /  20.0M (  0%)</span>
+<span id="cb3-11"><a href="#cb3-11" aria-hidden="true" tabindex="-1"></a>           OAK |  30.8TB / 240.0TB [|          12%] |   6.6M /  36.0M ( 18%)</span>
+<span id="cb3-12"><a href="#cb3-12" aria-hidden="true" tabindex="-1"></a>+---------------------------------------------------------------------------+</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p><code>sh_quota</code> is a Sherlock-specific command that provides a general overview for all partitions a user has access to. <a href="https://www.sherlock.stanford.edu/docs/storage/?h=sh_quota#checking-quotas">Documentation is provided on their wiki</a>. When your home directory begins to get filled, it may be valuable to consider moving files to scratch directories, or group directories. <code>HOME</code>, <code>GROUP_HOME</code>, and <code>OAK</code> are persistent storage; <code>*SCRATCH</code> directories are subject to purging.</p>
+<p>Another useful tool is the disk usage command <code>du</code>. A useful and more interacrtive version of this command is <code>ncdu</code>. To use <code>ncdu</code>, add the following line to the bottom of your <code>~/.bash_profile</code>, which will load the <code>ncdu</code> module each time you log in to Sherlock:</p>
+<div class="sourceCode" id="cb4"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a><span class="ex">ml</span> system ncdu</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p>and then update your <code>~/.bash_profile</code> for the current session with:</p>
+<div class="sourceCode" id="cb5"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="ex">$</span> source ~/.bash_profile</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p>which will allow the current session to load the new module updated in your bash profile for <code>ncdu</code>. For future login sessions, re-sourcing your <code>~/.bash_profile</code> is unnecessary.</p>
+<p>In the present and future login sessions, you can access the <code>ncdu</code> command via:</p>
+<div class="sourceCode" id="cb6"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb6-1"><a href="#cb6-1" aria-hidden="true" tabindex="-1"></a><span class="ex">$</span> ncdu <span class="op">&lt;</span>folder<span class="op">&gt;</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p>which will launch an interactive window for monitoring directory sizes from the folder specified by <code>&lt;folder&gt;</code>. Sherlock <a href="https://www.sherlock.stanford.edu/docs/storage/?h=ncdu#locating-large-directories">recommends running it in an interactive job</a>. This can be useful when identifying where quota usage is being allocated.</p>
+
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diff --git a/docs/labguide/computing/sherlock/data-management.html b/docs/labguide/computing/sherlock/data-management.html
new file mode 100644
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+  <li><a href="#data-management-on-sherlock" id="toc-data-management-on-sherlock" class="nav-link active" data-scroll-target="#data-management-on-sherlock">Data management on Sherlock</a></li>
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+
+
+
+
+<section id="data-management-on-sherlock" class="level2">
+<h2 class="anchored" data-anchor-id="data-management-on-sherlock">Data management on Sherlock</h2>
+<p>This section describes how the lab manages datasets on Sherlock, including setting permissions (i.e., who else in the lab can access the dataset).</p>
+<p>Datasets that are considered to be common lab assets (which includes any new studies within the lab and any openly shared datasets) should be placed into the primary data directory on the relevant filesystem. Datasets that are in process of acquisition should go into the “inprocess” directory. Once the dataset is finalized, it should be moved into the “data” directory.</p>
+<p>Once a dataset has been installed in the data directory, it should be changed to be read-only for owner and group, using the following commands:</p>
+<div class="sourceCode" id="cb1"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">find</span> <span class="op">&lt;</span>directory name<span class="op">&gt;</span> -type d <span class="at">-exec</span> chmod 550</span>
+<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="fu">find</span> <span class="op">&lt;</span>directory name<span class="op">&gt;</span> -type f <span class="at">-exec</span> chmod 440</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p>Datasets that are temporary, or files generated for analyses that are not intended to be reused or shared, should be placed within the user directory.</p>
+<section id="restricting-access" class="level4">
+<h4 class="anchored" data-anchor-id="restricting-access">Restricting access</h4>
+<p>Some data resources cannot be shared across the lab and instead need to be restricted to lab members with Data Usage Agreement (DUA) access. This can be done via access control lists (ACLs), which allow a resource to be owned by a particular owner/group, but applies an additional more specific set of permissions. The following can be adapted to restrict ACLs to an appropriate subset of lab members:</p>
+<div class="code-with-filename">
+<div class="code-with-filename-file">
+<pre><strong>protect_access.sh</strong></pre>
+</div>
+<div class="sourceCode" id="cb2" data-filename="protect_access.sh"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="co">#!/bin/bash</span></span>
+<span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a><span class="bu">echo</span> <span class="st">"Using ACLs to restrict folder access on oak for russpold folders"</span></span>
+<span id="cb2-4"><a href="#cb2-4" aria-hidden="true" tabindex="-1"></a><span class="bu">echo</span> <span class="at">-e</span> <span class="st">"\t https://www.sherlock.stanford.edu/docs/storage/data-sharing/#posix-acls "</span></span>
+<span id="cb2-5"><a href="#cb2-5" aria-hidden="true" tabindex="-1"></a><span class="fu">sleep</span> 1</span>
+<span id="cb2-6"><a href="#cb2-6" aria-hidden="true" tabindex="-1"></a><span class="bu">echo</span></span>
+<span id="cb2-7"><a href="#cb2-7" aria-hidden="true" tabindex="-1"></a><span class="co"># get user input for directory + user</span></span>
+<span id="cb2-8"><a href="#cb2-8" aria-hidden="true" tabindex="-1"></a><span class="bu">read</span> <span class="at">-p</span> <span class="st">"Enter the folder path: "</span> <span class="va">dir_name</span></span>
+<span id="cb2-9"><a href="#cb2-9" aria-hidden="true" tabindex="-1"></a><span class="cf">if</span> <span class="bu">[</span> <span class="ot">!</span> <span class="ot">-d</span> <span class="st">"</span><span class="va">$dir_name</span><span class="st">"</span> <span class="bu">]</span><span class="kw">;</span> <span class="cf">then</span></span>
+<span id="cb2-10"><a href="#cb2-10" aria-hidden="true" tabindex="-1"></a>    <span class="bu">echo</span> <span class="st">"Error: </span><span class="va">${dir_name}</span><span class="st"> doesn't exist"</span></span>
+<span id="cb2-11"><a href="#cb2-11" aria-hidden="true" tabindex="-1"></a>    <span class="bu">exit</span> 1</span>
+<span id="cb2-12"><a href="#cb2-12" aria-hidden="true" tabindex="-1"></a><span class="cf">fi</span></span>
+<span id="cb2-13"><a href="#cb2-13" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb2-14"><a href="#cb2-14" aria-hidden="true" tabindex="-1"></a><span class="bu">read</span> <span class="at">-p</span> <span class="st">"Enter the username: "</span> <span class="va">user_name</span></span>
+<span id="cb2-15"><a href="#cb2-15" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb2-16"><a href="#cb2-16" aria-hidden="true" tabindex="-1"></a><span class="co"># set restrictions, repeating once for each desired user</span></span>
+<span id="cb2-17"><a href="#cb2-17" aria-hidden="true" tabindex="-1"></a><span class="bu">echo</span> <span class="at">-e</span> <span class="st">"Setting restrictions for </span><span class="va">${user_name}</span><span class="st"> as rxw for folder: /n </span><span class="va">${dir_name}</span><span class="st">"</span></span>
+<span id="cb2-18"><a href="#cb2-18" aria-hidden="true" tabindex="-1"></a><span class="ex">setfacl</span> <span class="at">-R</span> <span class="at">-m</span> u:<span class="va">$user_name</span>:rwx <span class="va">$dir_name</span></span>
+<span id="cb2-19"><a href="#cb2-19" aria-hidden="true" tabindex="-1"></a><span class="ex">setfacl</span> <span class="at">-R</span> <span class="at">-d</span> <span class="at">-m</span> u:<span class="va">$user_name</span>:rwx <span class="va">$dir_name</span></span>
+<span id="cb2-20"><a href="#cb2-20" aria-hidden="true" tabindex="-1"></a><span class="co"># repeat the above commands, replacing $user_name with the usernames</span></span>
+<span id="cb2-21"><a href="#cb2-21" aria-hidden="true" tabindex="-1"></a><span class="co"># for additional members</span></span>
+<span id="cb2-22"><a href="#cb2-22" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb2-23"><a href="#cb2-23" aria-hidden="true" tabindex="-1"></a><span class="co"># rm default permissions for the group -- oak_russpold</span></span>
+<span id="cb2-24"><a href="#cb2-24" aria-hidden="true" tabindex="-1"></a><span class="ex">setfacl</span> <span class="at">-m</span> d::group:oak_russpold:--- <span class="va">$dir_name</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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diff --git a/docs/labguide/computing/sherlock/job-submission.html b/docs/labguide/computing/sherlock/job-submission.html
new file mode 100644
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+  <ul>
+  <li><a href="#job-submission-on-sherlock" id="toc-job-submission-on-sherlock" class="nav-link active" data-scroll-target="#job-submission-on-sherlock">Job submission on Sherlock</a>
+  <ul class="collapse">
+  <li><a href="#determining-where-to-submit-your-jobs" id="toc-determining-where-to-submit-your-jobs" class="nav-link" data-scroll-target="#determining-where-to-submit-your-jobs">Determining where to submit your jobs</a></li>
+  <li><a href="#running-interactive-jobs-with-sh_dev" id="toc-running-interactive-jobs-with-sh_dev" class="nav-link" data-scroll-target="#running-interactive-jobs-with-sh_dev">Running interactive jobs with <code>sh_dev</code></a></li>
+  <li><a href="#submitting-to-the-scheduler" id="toc-submitting-to-the-scheduler" class="nav-link" data-scroll-target="#submitting-to-the-scheduler">Submitting to the scheduler</a></li>
+  <li><a href="#evaluating-completed-job-resources" id="toc-evaluating-completed-job-resources" class="nav-link" data-scroll-target="#evaluating-completed-job-resources">Evaluating completed job resources</a></li>
+  </ul></li>
+  </ul>
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+
+
+
+
+<section id="job-submission-on-sherlock" class="level2">
+<h2 class="anchored" data-anchor-id="job-submission-on-sherlock">Job submission on Sherlock</h2>
+<div class="callout callout-style-default callout-important callout-titled">
+<div class="callout-header d-flex align-content-center">
+<div class="callout-icon-container">
+<i class="callout-icon"></i>
+</div>
+<div class="callout-title-container flex-fill">
+Important
+</div>
+</div>
+<div class="callout-body-container callout-body">
+<p>Login nodes are shared among many users and therefore must not be used to run computationally intensive tasks. Those should be submitted to the scheduler which will dispatch them on compute nodes.</p>
+</div>
+</div>
+<section id="determining-where-to-submit-your-jobs" class="level3">
+<h3 class="anchored" data-anchor-id="determining-where-to-submit-your-jobs">Determining where to submit your jobs</h3>
+<p>You can check available resources with the <code>sh_part</code> command:</p>
+<div class="sourceCode" id="cb1"><pre class="sourceCode default code-with-copy"><code class="sourceCode default"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a>$ sh_part</span>
+<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a>     QUEUE STA   FREE  TOTAL   FREE  TOTAL RESORC  OTHER MAXJOBTIME    CORES       NODE   GRES</span>
+<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a> PARTITION TUS  CORES  CORES  NODES  NODES PENDNG PENDNG  DAY-HR:MN    /NODE     MEM-GB (COUNT)</span>
+<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a>    normal   *    153   1792      0     84    23k    127    7-00:00    20-24    128-191 -</span>
+<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a>    bigmem         29     88      0      2      0      8    1-00:00    32-56   512-3072 -</span>
+<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a>       dev         31     40      0      2      0      0    0-02:00       20        128 -</span>
+<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a>       gpu         47    172      0      8    116      1    7-00:00    20-24    191-256 gpu:4(S:0-1)(2),gpu:4(S:0)(6)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p>This will list out the compute resources available to you, so that you can determine the optimal resource to use.</p>
+</section>
+<section id="running-interactive-jobs-with-sh_dev" class="level3">
+<h3 class="anchored" data-anchor-id="running-interactive-jobs-with-sh_dev">Running interactive jobs with <code>sh_dev</code></h3>
+<p><code>sh_dev</code> sessions run on dedicated compute nodes, ensuring minimal wait times when you need to access a node for testing script, debug code or any kind of interactive work. <code>sh_dev</code> also provides X11 forwarding via the submission host (typically the login node you’re connected to) and can thus be used to run GUI applications.</p>
+<p>Users can <a href="https://www.sherlock.stanford.edu/docs/user-guide/running-jobs/#compute-nodes">specify <code>sh_dev</code> calls</a> with specific memory requests.</p>
+<section id="interactive-jobs-from-existing-scripts-salloc" class="level4">
+<h4 class="anchored" data-anchor-id="interactive-jobs-from-existing-scripts-salloc">Interactive jobs from existing scripts: <code>salloc</code></h4>
+<p>If you prefer to submit an existing job script or other executable as an interactive job, you can use the <code>salloc</code> command:</p>
+<div class="sourceCode" id="cb2"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="ex">salloc</span> script.sh</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p><code>salloc</code> will start a Slurm job and allocate resources for it, but it will not automatically connect you to the allocated node(s). It will only start a new shell on the same node you launched salloc from, and set up the appropriate <code>$SLURM_*</code> environment variables.</p>
+</section>
+</section>
+<section id="submitting-to-the-scheduler" class="level3">
+<h3 class="anchored" data-anchor-id="submitting-to-the-scheduler">Submitting to the scheduler</h3>
+<p>Most large, long-running jobs on Sherlock should be submitted via the job scheduler.</p>
+<p>Most jobs can be submitted the the scheduler using the <code>sbatch</code> command. Sherlock provides <a href="https://www.sherlock.stanford.edu/docs/getting-started/submitting/#batch-scripts">documentation</a> for how to generate <code>sbatch</code> submission scripts. There is also an <a href="http://slurm-o-matic.stanford.edu/">experimental slurm-o-matic</a> tool to help in generating these scripts interactively.</p>
+<section id="best-practice-in-submitting-jobs" class="level4">
+<h4 class="anchored" data-anchor-id="best-practice-in-submitting-jobs">Best practice in submitting jobs</h4>
+<p>Best practice before launching large, long-running jobs on Sherlock is to run a short test job to evaluate the time memory requirements. The basic idea is to run a small test job with minimal resource requirements—so the job will run quickly—then re-queue the job with optimized resource requests.</p>
+<p>Jobs can be evaluated along three dimensions: memory, parallelization (i.e., number of nodes and CPUs), and run time. We briefly highlight why each axis is important below, as well as how to evaluate its requirements.</p>
+<ul>
+<li><p><strong>Memory:</strong> Evaluating memory requirements of completed jobs is straightforward tools such as <code>sacct</code> (see <strong>?@sec-acct</strong>). Requesting excessive memory and not using it will count against your <a href="https://www.sherlock.stanford.edu/docs/glossary/#fairshare">FairShare score</a>.</p></li>
+<li><p><strong>Parallelization:</strong> Evaluating how well the job performance scales with added CPUs can be done using <code>seff</code> (see <a href="#sec-seff" class="quarto-xref">Section&nbsp;1.4.1</a>). Requesting CPUs then not using them will still count against your <a href="https://www.sherlock.stanford.edu/docs/glossary/#fairshare">FairShare score</a>.</p></li>
+<li><p><strong>Run Time:</strong> Requesting excess time for your jobs will <em>not</em> count against your <a href="https://www.sherlock.stanford.edu/docs/glossary/#fairshare">FairShare score</a>, but it will affect how quickly the scheduler allocates resources to your job.</p></li>
+</ul>
+<p>Below, we provide more detailed resources (and example commands) for monitoring jobs.</p>
+</section>
+<section id="monitoring-running-jobs" class="level4">
+<h4 class="anchored" data-anchor-id="monitoring-running-jobs">Monitoring running jobs</h4>
+<section id="using-squeue" class="level5">
+<h5 class="anchored" data-anchor-id="using-squeue">Using <code>squeue</code></h5>
+<p>Users can monitor the status of their currently running jobs on Sherlock with <code>squeue</code>:</p>
+<div class="sourceCode" id="cb3"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="ex">squeue</span> <span class="at">-u</span> <span class="va">$USER</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p>This command will monitor how long a job has been sitting on queue or actively running, depending on status.</p>
+</section>
+<section id="using-clush" class="level5">
+<h5 class="anchored" data-anchor-id="using-clush">Using <code>clush</code></h5>
+<p>More detailed information on running jobs can be found using <a href="https://www.sherlock.stanford.edu/docs/software/using/clustershell/"><code>clush</code></a>, which can be loaded via the module system:</p>
+<div class="sourceCode" id="cb4"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a><span class="ex">ml</span> system py-clustershell</span>
+<span id="cb4-2"><a href="#cb4-2" aria-hidden="true" tabindex="-1"></a><span class="ex">clush</span> <span class="at">-N</span> <span class="at">-w</span> @job:<span class="op">&lt;</span>your Job ID<span class="op">&gt;</span> top <span class="at">-b</span> <span class="at">-n</span> 1</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p>On Sherlock, it provides an easy way to run commands on nodes your jobs are running on, and collect back information. In the above example, we use <code>clush</code> to execute the <code>top</code> command, which provides real-time monitoring of job resource usage. Many other uses are possible; for example,</p>
+<div class="sourceCode" id="cb5"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="ex">clush</span> <span class="at">-w</span> @j:<span class="op">&lt;</span>your Job ID<span class="op">&gt;</span> ps <span class="at">-u</span><span class="va">$USER</span> <span class="at">-o%cpu,rss,cmd</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p>Will return the CPU and memory usage of all processes for a given job ID.</p>
+</section>
+</section>
+<section id="example-of-fmriprep-job-submissions" class="level4">
+<h4 class="anchored" data-anchor-id="example-of-fmriprep-job-submissions">Example of fMRIPrep job submissions</h4>
+<p>One application commonly run within Poldracklab is <a href="https://fmriprep.org/en/stable/"><code>fMRIPrep</code></a>. Since lab members will often submit many fMRIPrep jobs at the same time, it is best practice to submit these as an <a href="https://rcpedia.stanford.edu/training/10_job_array.html">array job</a>.</p>
+<p>We provide an example fMRIPrep array job script below for running 5 individual subjects.</p>
+<div class="code-with-filename">
+<div class="code-with-filename-file">
+<pre><strong>submit_fmriprep_array.sh</strong></pre>
+</div>
+<div class="sourceCode" id="cb6" data-filename="submit_fmriprep_array.sh"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb6-1"><a href="#cb6-1" aria-hidden="true" tabindex="-1"></a><span class="co">#!/bin/bash</span></span>
+<span id="cb6-2"><a href="#cb6-2" aria-hidden="true" tabindex="-1"></a><span class="co">#</span></span>
+<span id="cb6-3"><a href="#cb6-3" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH --job-name=fMRIPrep</span></span>
+<span id="cb6-4"><a href="#cb6-4" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH --output=fmriprep.%j.out</span></span>
+<span id="cb6-5"><a href="#cb6-5" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH --time=1-00:00</span></span>
+<span id="cb6-6"><a href="#cb6-6" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH --cpus-per-task=16</span></span>
+<span id="cb6-7"><a href="#cb6-7" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH --mem-per-cpu=8GB</span></span>
+<span id="cb6-8"><a href="#cb6-8" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH --mail-user=&lt;your-email&gt;@stanford.edu</span></span>
+<span id="cb6-9"><a href="#cb6-9" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH --mail-type=FAIL</span></span>
+<span id="cb6-10"><a href="#cb6-10" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH --array=1-5</span></span>
+<span id="cb6-11"><a href="#cb6-11" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -p russpold,owners,normal</span></span>
+<span id="cb6-12"><a href="#cb6-12" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb6-13"><a href="#cb6-13" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb6-14"><a href="#cb6-14" aria-hidden="true" tabindex="-1"></a><span class="co"># Define directories</span></span>
+<span id="cb6-15"><a href="#cb6-15" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb6-16"><a href="#cb6-16" aria-hidden="true" tabindex="-1"></a><span class="va">DATADIR</span><span class="op">=&lt;</span>/your/project/directory<span class="op">&gt;</span></span>
+<span id="cb6-17"><a href="#cb6-17" aria-hidden="true" tabindex="-1"></a><span class="va">SCRATCH</span><span class="op">=&lt;</span>/your/scratch/directory<span class="op">&gt;</span></span>
+<span id="cb6-18"><a href="#cb6-18" aria-hidden="true" tabindex="-1"></a><span class="va">SIMGDIR</span><span class="op">=&lt;</span>/your/project/directory/simgs<span class="op">&gt;</span></span>
+<span id="cb6-19"><a href="#cb6-19" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb6-20"><a href="#cb6-20" aria-hidden="true" tabindex="-1"></a><span class="co"># Begin work section</span></span>
+<span id="cb6-21"><a href="#cb6-21" aria-hidden="true" tabindex="-1"></a><span class="va">subj_list</span><span class="op">=</span><span class="va">(</span><span class="kw">`</span><span class="fu">find</span> <span class="va">$DATADIR</span> <span class="at">-maxdepth</span> 1 <span class="at">-type</span> d <span class="at">-name</span> <span class="st">'sub-*'</span> <span class="at">-printf</span> <span class="st">'%f\n'</span> <span class="kw">|</span> <span class="fu">sort</span> <span class="at">-n</span> <span class="at">-ts</span> <span class="at">-k2.1</span><span class="kw">`</span><span class="va">)</span></span>
+<span id="cb6-22"><a href="#cb6-22" aria-hidden="true" tabindex="-1"></a><span class="va">sub</span><span class="op">=</span><span class="st">"</span><span class="va">${subj_list</span><span class="op">[</span><span class="va">$SLURM_ARRAY_TASK_ID</span><span class="op">]</span><span class="va">}</span><span class="st">"</span></span>
+<span id="cb6-23"><a href="#cb6-23" aria-hidden="true" tabindex="-1"></a><span class="bu">echo</span> <span class="st">"SUBJECT_ID: "</span> <span class="va">$sub</span></span>
+<span id="cb6-24"><a href="#cb6-24" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb6-25"><a href="#cb6-25" aria-hidden="true" tabindex="-1"></a><span class="ex">singularity</span> run <span class="at">--cleanenv</span> <span class="at">-B</span> <span class="va">${DATADIR}</span>:/data:ro <span class="dt">\</span></span>
+<span id="cb6-26"><a href="#cb6-26" aria-hidden="true" tabindex="-1"></a>    <span class="at">-B</span> <span class="va">${SCRATCH}</span>:/out <span class="dt">\</span></span>
+<span id="cb6-27"><a href="#cb6-27" aria-hidden="true" tabindex="-1"></a>    <span class="at">-B</span> <span class="va">${DATADIR}</span>/license.txt:/license/license.txt:ro <span class="dt">\</span></span>
+<span id="cb6-28"><a href="#cb6-28" aria-hidden="true" tabindex="-1"></a>    <span class="va">${SIMGDIR}</span>/fmriprep-23-2-0.simg <span class="dt">\</span></span>
+<span id="cb6-29"><a href="#cb6-29" aria-hidden="true" tabindex="-1"></a>    /data /out participant <span class="dt">\</span></span>
+<span id="cb6-30"><a href="#cb6-30" aria-hidden="true" tabindex="-1"></a>        <span class="at">--participant-label</span> <span class="va">${sub}</span> <span class="dt">\</span></span>
+<span id="cb6-31"><a href="#cb6-31" aria-hidden="true" tabindex="-1"></a>    <span class="at">--output-space</span> MNI152NLin2009cAsym:res-2 <span class="dt">\</span></span>
+<span id="cb6-32"><a href="#cb6-32" aria-hidden="true" tabindex="-1"></a>    <span class="at">-w</span> /out/workdir <span class="dt">\</span></span>
+<span id="cb6-33"><a href="#cb6-33" aria-hidden="true" tabindex="-1"></a>    <span class="at">--notrack</span> <span class="dt">\</span></span>
+<span id="cb6-34"><a href="#cb6-34" aria-hidden="true" tabindex="-1"></a>        <span class="at">--fs-license-file</span> /license/license.txt </span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+</div>
+</section>
+</section>
+<section id="evaluating-completed-job-resources" class="level3">
+<h3 class="anchored" data-anchor-id="evaluating-completed-job-resources">Evaluating completed job resources</h3>
+<p>Regardless of whether your job was run in an interactive (i.e., using <code>sh_dev</code>) or non-interactive (i.e., using <code>sbatch</code> session), it is useful to evaluate how many resources they consumed after running:</p>
+<section id="sec-seff" class="level4">
+<h4 class="anchored" data-anchor-id="sec-seff">Using <code>seff</code></h4>
+<p>Nominally, the fastest and easiest way to get a summary report, for a given job, is the “SLURM efficiency” tool, <code>seff</code>. This tool returns a simple, human-readable format report that includes both allocated as well as actually used resources (nodes, CPUs, memory, wall time).</p>
+<div class="sourceCode" id="cb7"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb7-1"><a href="#cb7-1" aria-hidden="true" tabindex="-1"></a><span class="ex">seff</span> <span class="op">&lt;</span>your Job ID<span class="op">&gt;</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p>Generally speaking, <code>seff</code> reports can be used to determine how well (if at all) a job parallelizes, how much memory to request for future implementations of the job, and how much time to request. More granular reporting, however, is possible using the <code>sacct</code> command.</p>
+</section>
+<section id="sec-sacct" class="level4">
+<h4 class="anchored" data-anchor-id="sec-sacct">Using <code>sacct</code></h4>
+<p>More rigorous resource analysis can be performed after a job has completed by using SLURM accounting, or <code>sacct</code>. Again, SLURM provides a rigorous documentation, including using <code>--format=</code> to define which columns to output and the various options that can constrain a query.</p>
+<div class="sourceCode" id="cb8"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb8-1"><a href="#cb8-1" aria-hidden="true" tabindex="-1"></a><span class="ex">sacct</span> <span class="at">--user</span><span class="op">=</span><span class="va">$USER</span> <span class="at">--start</span><span class="op">=</span>2023-09-01 <span class="at">--end</span><span class="op">=</span>2023-09-03 <span class="at">--format</span><span class="op">=</span>jobid,jobname,partition,account,nnodes,ncpus,reqmem,maxrss,elapsed,totalcpu,state,reason</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+
+
+</section>
+</section>
+</section>
+
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+    const button = e.trigger;
+    // don't keep focus
+    button.blur();
+    // flash "checked"
+    button.classList.add('code-copy-button-checked');
+    var currentTitle = button.getAttribute("title");
+    button.setAttribute("title", "Copied!");
+    let tooltip;
+    if (window.bootstrap) {
+      button.setAttribute("data-bs-toggle", "tooltip");
+      button.setAttribute("data-bs-placement", "left");
+      button.setAttribute("data-bs-title", "Copied!");
+      tooltip = new bootstrap.Tooltip(button, 
+        { trigger: "manual", 
+          customClass: "code-copy-button-tooltip",
+          offset: [0, -8]});
+      tooltip.show();    
+    }
+    setTimeout(function() {
+      if (tooltip) {
+        tooltip.hide();
+        button.removeAttribute("data-bs-title");
+        button.removeAttribute("data-bs-toggle");
+        button.removeAttribute("data-bs-placement");
+      }
+      button.setAttribute("title", currentTitle);
+      button.classList.remove('code-copy-button-checked');
+    }, 1000);
+    // clear code selection
+    e.clearSelection();
+  }
+  const getTextToCopy = function(trigger) {
+      const codeEl = trigger.previousElementSibling.cloneNode(true);
+      for (const childEl of codeEl.children) {
+        if (isCodeAnnotation(childEl)) {
+          childEl.remove();
+        }
+      }
+      return codeEl.innerText;
+  }
+  const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', {
+    text: getTextToCopy
+  });
+  clipboard.on('success', onCopySuccess);
+  if (window.document.getElementById('quarto-embedded-source-code-modal')) {
+    const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
+      text: getTextToCopy,
+      container: window.document.getElementById('quarto-embedded-source-code-modal')
+    });
+    clipboardModal.on('success', onCopySuccess);
+  }
+    var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
+    var mailtoRegex = new RegExp(/^mailto:/);
+      var filterRegex = new RegExp('/' + window.location.host + '/');
+    var isInternal = (href) => {
+        return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
+    }
+    // Inspect non-navigation links and adorn them if external
+ 	var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)');
+    for (var i=0; i<links.length; i++) {
+      const link = links[i];
+      if (!isInternal(link.href)) {
+        // undo the damage that might have been done by quarto-nav.js in the case of
+        // links that we want to consider external
+        if (link.dataset.originalHref !== undefined) {
+          link.href = link.dataset.originalHref;
+        }
+      }
+    }
+  function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
+    const config = {
+      allowHTML: true,
+      maxWidth: 500,
+      delay: 100,
+      arrow: false,
+      appendTo: function(el) {
+          return el.parentElement;
+      },
+      interactive: true,
+      interactiveBorder: 10,
+      theme: 'quarto',
+      placement: 'bottom-start',
+    };
+    if (contentFn) {
+      config.content = contentFn;
+    }
+    if (onTriggerFn) {
+      config.onTrigger = onTriggerFn;
+    }
+    if (onUntriggerFn) {
+      config.onUntrigger = onUntriggerFn;
+    }
+    window.tippy(el, config); 
+  }
+  const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
+  for (var i=0; i<noterefs.length; i++) {
+    const ref = noterefs[i];
+    tippyHover(ref, function() {
+      // use id or data attribute instead here
+      let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href');
+      try { href = new URL(href).hash; } catch {}
+      const id = href.replace(/^#\/?/, "");
+      const note = window.document.getElementById(id);
+      if (note) {
+        return note.innerHTML;
+      } else {
+        return "";
+      }
+    });
+  }
+  const xrefs = window.document.querySelectorAll('a.quarto-xref');
+  const processXRef = (id, note) => {
+    // Strip column container classes
+    const stripColumnClz = (el) => {
+      el.classList.remove("page-full", "page-columns");
+      if (el.children) {
+        for (const child of el.children) {
+          stripColumnClz(child);
+        }
+      }
+    }
+    stripColumnClz(note)
+    if (id === null || id.startsWith('sec-')) {
+      // Special case sections, only their first couple elements
+      const container = document.createElement("div");
+      if (note.children && note.children.length > 2) {
+        container.appendChild(note.children[0].cloneNode(true));
+        for (let i = 1; i < note.children.length; i++) {
+          const child = note.children[i];
+          if (child.tagName === "P" && child.innerText === "") {
+            continue;
+          } else {
+            container.appendChild(child.cloneNode(true));
+            break;
+          }
+        }
+        if (window.Quarto?.typesetMath) {
+          window.Quarto.typesetMath(container);
+        }
+        return container.innerHTML
+      } else {
+        if (window.Quarto?.typesetMath) {
+          window.Quarto.typesetMath(note);
+        }
+        return note.innerHTML;
+      }
+    } else {
+      // Remove any anchor links if they are present
+      const anchorLink = note.querySelector('a.anchorjs-link');
+      if (anchorLink) {
+        anchorLink.remove();
+      }
+      if (window.Quarto?.typesetMath) {
+        window.Quarto.typesetMath(note);
+      }
+      if (note.classList.contains("callout")) {
+        return note.outerHTML;
+      } else {
+        return note.innerHTML;
+      }
+    }
+  }
+  for (var i=0; i<xrefs.length; i++) {
+    const xref = xrefs[i];
+    tippyHover(xref, undefined, function(instance) {
+      instance.disable();
+      let url = xref.getAttribute('href');
+      let hash = undefined; 
+      if (url.startsWith('#')) {
+        hash = url;
+      } else {
+        try { hash = new URL(url).hash; } catch {}
+      }
+      if (hash) {
+        const id = hash.replace(/^#\/?/, "");
+        const note = window.document.getElementById(id);
+        if (note !== null) {
+          try {
+            const html = processXRef(id, note.cloneNode(true));
+            instance.setContent(html);
+          } finally {
+            instance.enable();
+            instance.show();
+          }
+        } else {
+          // See if we can fetch this
+          fetch(url.split('#')[0])
+          .then(res => res.text())
+          .then(html => {
+            const parser = new DOMParser();
+            const htmlDoc = parser.parseFromString(html, "text/html");
+            const note = htmlDoc.getElementById(id);
+            if (note !== null) {
+              const html = processXRef(id, note);
+              instance.setContent(html);
+            } 
+          }).finally(() => {
+            instance.enable();
+            instance.show();
+          });
+        }
+      } else {
+        // See if we can fetch a full url (with no hash to target)
+        // This is a special case and we should probably do some content thinning / targeting
+        fetch(url)
+        .then(res => res.text())
+        .then(html => {
+          const parser = new DOMParser();
+          const htmlDoc = parser.parseFromString(html, "text/html");
+          const note = htmlDoc.querySelector('main.content');
+          if (note !== null) {
+            // This should only happen for chapter cross references
+            // (since there is no id in the URL)
+            // remove the first header
+            if (note.children.length > 0 && note.children[0].tagName === "HEADER") {
+              note.children[0].remove();
+            }
+            const html = processXRef(null, note);
+            instance.setContent(html);
+          } 
+        }).finally(() => {
+          instance.enable();
+          instance.show();
+        });
+      }
+    }, function(instance) {
+    });
+  }
+      let selectedAnnoteEl;
+      const selectorForAnnotation = ( cell, annotation) => {
+        let cellAttr = 'data-code-cell="' + cell + '"';
+        let lineAttr = 'data-code-annotation="' +  annotation + '"';
+        const selector = 'span[' + cellAttr + '][' + lineAttr + ']';
+        return selector;
+      }
+      const selectCodeLines = (annoteEl) => {
+        const doc = window.document;
+        const targetCell = annoteEl.getAttribute("data-target-cell");
+        const targetAnnotation = annoteEl.getAttribute("data-target-annotation");
+        const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation));
+        const lines = annoteSpan.getAttribute("data-code-lines").split(",");
+        const lineIds = lines.map((line) => {
+          return targetCell + "-" + line;
+        })
+        let top = null;
+        let height = null;
+        let parent = null;
+        if (lineIds.length > 0) {
+            //compute the position of the single el (top and bottom and make a div)
+            const el = window.document.getElementById(lineIds[0]);
+            top = el.offsetTop;
+            height = el.offsetHeight;
+            parent = el.parentElement.parentElement;
+          if (lineIds.length > 1) {
+            const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]);
+            const bottom = lastEl.offsetTop + lastEl.offsetHeight;
+            height = bottom - top;
+          }
+          if (top !== null && height !== null && parent !== null) {
+            // cook up a div (if necessary) and position it 
+            let div = window.document.getElementById("code-annotation-line-highlight");
+            if (div === null) {
+              div = window.document.createElement("div");
+              div.setAttribute("id", "code-annotation-line-highlight");
+              div.style.position = 'absolute';
+              parent.appendChild(div);
+            }
+            div.style.top = top - 2 + "px";
+            div.style.height = height + 4 + "px";
+            div.style.left = 0;
+            let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter");
+            if (gutterDiv === null) {
+              gutterDiv = window.document.createElement("div");
+              gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter");
+              gutterDiv.style.position = 'absolute';
+              const codeCell = window.document.getElementById(targetCell);
+              const gutter = codeCell.querySelector('.code-annotation-gutter');
+              gutter.appendChild(gutterDiv);
+            }
+            gutterDiv.style.top = top - 2 + "px";
+            gutterDiv.style.height = height + 4 + "px";
+          }
+          selectedAnnoteEl = annoteEl;
+        }
+      };
+      const unselectCodeLines = () => {
+        const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"];
+        elementsIds.forEach((elId) => {
+          const div = window.document.getElementById(elId);
+          if (div) {
+            div.remove();
+          }
+        });
+        selectedAnnoteEl = undefined;
+      };
+        // Handle positioning of the toggle
+    window.addEventListener(
+      "resize",
+      throttle(() => {
+        elRect = undefined;
+        if (selectedAnnoteEl) {
+          selectCodeLines(selectedAnnoteEl);
+        }
+      }, 10)
+    );
+    function throttle(fn, ms) {
+    let throttle = false;
+    let timer;
+      return (...args) => {
+        if(!throttle) { // first call gets through
+            fn.apply(this, args);
+            throttle = true;
+        } else { // all the others get throttled
+            if(timer) clearTimeout(timer); // cancel #2
+            timer = setTimeout(() => {
+              fn.apply(this, args);
+              timer = throttle = false;
+            }, ms);
+        }
+      };
+    }
+      // Attach click handler to the DT
+      const annoteDls = window.document.querySelectorAll('dt[data-target-cell]');
+      for (const annoteDlNode of annoteDls) {
+        annoteDlNode.addEventListener('click', (event) => {
+          const clickedEl = event.target;
+          if (clickedEl !== selectedAnnoteEl) {
+            unselectCodeLines();
+            const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active');
+            if (activeEl) {
+              activeEl.classList.remove('code-annotation-active');
+            }
+            selectCodeLines(clickedEl);
+            clickedEl.classList.add('code-annotation-active');
+          } else {
+            // Unselect the line
+            unselectCodeLines();
+            clickedEl.classList.remove('code-annotation-active');
+          }
+        });
+      }
+  const findCites = (el) => {
+    const parentEl = el.parentElement;
+    if (parentEl) {
+      const cites = parentEl.dataset.cites;
+      if (cites) {
+        return {
+          el,
+          cites: cites.split(' ')
+        };
+      } else {
+        return findCites(el.parentElement)
+      }
+    } else {
+      return undefined;
+    }
+  };
+  var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
+  for (var i=0; i<bibliorefs.length; i++) {
+    const ref = bibliorefs[i];
+    const citeInfo = findCites(ref);
+    if (citeInfo) {
+      tippyHover(citeInfo.el, function() {
+        var popup = window.document.createElement('div');
+        citeInfo.cites.forEach(function(cite) {
+          var citeDiv = window.document.createElement('div');
+          citeDiv.classList.add('hanging-indent');
+          citeDiv.classList.add('csl-entry');
+          var biblioDiv = window.document.getElementById('ref-' + cite);
+          if (biblioDiv) {
+            citeDiv.innerHTML = biblioDiv.innerHTML;
+          }
+          popup.appendChild(citeDiv);
+        });
+        return popup.innerHTML;
+      });
+    }
+  }
+});
+</script>
+</div> <!-- /content -->
+<footer class="footer">
+  <div class="nav-footer">
+    <div class="nav-footer-left">
+<p>© 2023 Poldrack Lab, released under the <a href="https://creativecommons.org/licenses/by/4.0/">CC BY 4.0 license</a></p>
+</div>   
+    <div class="nav-footer-center">
+      &nbsp;
+    <div class="toc-actions d-sm-block d-md-none"><ul><li><a href="https://github.com/poldracklab/poldracklab.github.io/edit/main/labguide/computing/sherlock/job-submission.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/poldracklab/poldracklab.github.io/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></div>
+    <div class="nav-footer-right">
+<p>Built with <a href="https://quarto.org">Quarto</a></p>
+</div>
+  </div>
+</footer>
+
+
+
+
+</body></html>
\ No newline at end of file
diff --git a/docs/labguide/environment/code_of_conduct.html b/docs/labguide/environment/code_of_conduct.html
index 5ccab1a..4a87731 100644
--- a/docs/labguide/environment/code_of_conduct.html
+++ b/docs/labguide/environment/code_of_conduct.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/environment/expectations.html b/docs/labguide/environment/expectations.html
index 9eac11c..acfe1fc 100644
--- a/docs/labguide/environment/expectations.html
+++ b/docs/labguide/environment/expectations.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
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-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/environment/lab_environment.html b/docs/labguide/environment/lab_environment.html
index 11b03d1..5654846 100644
--- a/docs/labguide/environment/lab_environment.html
+++ b/docs/labguide/environment/lab_environment.html
@@ -231,21 +231,61 @@
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 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
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 </li>
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
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+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
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-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
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-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
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   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/environment/survey.html b/docs/labguide/environment/survey.html
index 4a92691..7e89031 100644
--- a/docs/labguide/environment/survey.html
+++ b/docs/labguide/environment/survey.html
@@ -229,21 +229,61 @@
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   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
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 </li>
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
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-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
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   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/environment/work_life_balance.html b/docs/labguide/environment/work_life_balance.html
index 5a04ad4..1487020 100644
--- a/docs/labguide/environment/work_life_balance.html
+++ b/docs/labguide/environment/work_life_balance.html
@@ -229,21 +229,61 @@
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 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
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 </li>
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/environment/working_remotely.html b/docs/labguide/environment/working_remotely.html
index 3d9ae45..b648e85 100644
--- a/docs/labguide/environment/working_remotely.html
+++ b/docs/labguide/environment/working_remotely.html
@@ -229,21 +229,61 @@
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   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
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-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/funding/funding.html b/docs/labguide/funding/funding.html
index ae537a0..54a235d 100644
--- a/docs/labguide/funding/funding.html
+++ b/docs/labguide/funding/funding.html
@@ -229,21 +229,61 @@
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+          <li class="sidebar-item sidebar-item-section">
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
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+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
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+          <li class="sidebar-item sidebar-item-section">
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
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-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
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-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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@@ -302,13 +342,13 @@
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/general_lab_policies.html b/docs/labguide/general_lab_policies.html
index 2e01427..de13091 100644
--- a/docs/labguide/general_lab_policies.html
+++ b/docs/labguide/general_lab_policies.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
-  <a href="../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
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+          <li class="sidebar-item sidebar-item-section">
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
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-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
   <a href="../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/index.html b/docs/labguide/index.html
index 8532bcb..be3da1d 100644
--- a/docs/labguide/index.html
+++ b/docs/labguide/index.html
@@ -231,21 +231,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
-  <a href="../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
   <a href="../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -304,13 +344,13 @@
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/mentoring/mentoring.html b/docs/labguide/mentoring/mentoring.html
index d81adc0..f5b38b5 100644
--- a/docs/labguide/mentoring/mentoring.html
+++ b/docs/labguide/mentoring/mentoring.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
@@ -367,6 +407,7 @@ <h2 id="toc-title">On this page</h2>
   <ul>
   <li><a href="#training-and-mentorship" id="toc-training-and-mentorship" class="nav-link active" data-scroll-target="#training-and-mentorship">Training and Mentorship</a>
   <ul class="collapse">
+  <li><a href="#undergraduate-study" id="toc-undergraduate-study" class="nav-link" data-scroll-target="#undergraduate-study">Undergraduate study</a></li>
   <li><a href="#graduate-study" id="toc-graduate-study" class="nav-link" data-scroll-target="#graduate-study">Graduate study</a>
   <ul class="collapse">
   <li><a href="#what-graduate-programs-are-you-affiliated-with" id="toc-what-graduate-programs-are-you-affiliated-with" class="nav-link" data-scroll-target="#what-graduate-programs-are-you-affiliated-with">What graduate programs are you affiliated with?</a></li>
@@ -398,6 +439,10 @@ <h2 id="toc-title">On this page</h2>
 <section id="training-and-mentorship" class="level1">
 <h1>Training and Mentorship</h1>
 <p>This section of the guide is a first-person perspective from Dr.&nbsp;Poldrack.</p>
+<section id="undergraduate-study" class="level2">
+<h2 class="anchored" data-anchor-id="undergraduate-study">Undergraduate study</h2>
+<p>We are always looking for undergraduate students to get involved on a variety of projects! If you are a Stanford affiliate and in the area, feel free to fill out this <a href="https://redcap.stanford.edu/surveys/?s=cN6fbYiPfp">form</a> and we will reach out to you.</p>
+</section>
 <section id="graduate-study" class="level2">
 <h2 class="anchored" data-anchor-id="graduate-study">Graduate study</h2>
 <section id="what-graduate-programs-are-you-affiliated-with" class="level3">
@@ -408,7 +453,7 @@ <h3 class="anchored" data-anchor-id="what-graduate-programs-are-you-affiliated-w
 <li><a href="https://psychology.stanford.edu/phd-program">Psychology</a></li>
 <li><a href="https://med.stanford.edu/neurogradprogram.html">Neuroscience</a></li>
 <li><a href="https://bioengineering.stanford.edu/academics-admission/graduate-programs">Bioengineering</a></li>
-<li>[Biomedical Data Science]https://dbds.stanford.edu/) (BMI)</li>
+<li><a href="https://dbds.stanford.edu/">Biomedical Data Science</a> (BMI)</li>
 </ul></li>
 </ul>
 </section>
@@ -457,7 +502,7 @@ <h3 class="anchored" data-anchor-id="how-can-i-get-a-postdoc-position-in-your-la
 <h2 class="anchored" data-anchor-id="mentoring-practices">Mentoring practices</h2>
 <section id="weekly-report" class="level3">
 <h3 class="anchored" data-anchor-id="weekly-report">Weekly report</h3>
-<p>Graduate students in the lab are expected to keep a running document (preferably a Google Doc) in which they report their progress every week along with any problems encountered.</p>
+<p>Graduate students in the lab are expected to keep suitable documentation for all research activities (i.e.&nbsp;a github log, a google doc, etc).</p>
 </section>
 <section id="scheduling-meetings-with-me" class="level3">
 <h3 class="anchored" data-anchor-id="scheduling-meetings-with-me">Scheduling meetings with me</h3>
diff --git a/docs/labguide/mission_statement.html b/docs/labguide/mission_statement.html
index b79e6b2..0fa6f05 100644
--- a/docs/labguide/mission_statement.html
+++ b/docs/labguide/mission_statement.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/publication/addressing_errors.html b/docs/labguide/publication/addressing_errors.html
index c8625a2..9d98eb1 100644
--- a/docs/labguide/publication/addressing_errors.html
+++ b/docs/labguide/publication/addressing_errors.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="true">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/publication/authorship.html b/docs/labguide/publication/authorship.html
index 8288e96..ff28140 100644
--- a/docs/labguide/publication/authorship.html
+++ b/docs/labguide/publication/authorship.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="true">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link active">
diff --git a/docs/labguide/publication/conferences.html b/docs/labguide/publication/conferences.html
index bf78008..247d45a 100644
--- a/docs/labguide/publication/conferences.html
+++ b/docs/labguide/publication/conferences.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="true">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/publication/openaccess.html b/docs/labguide/publication/openaccess.html
index 9d27ca0..66e99c7 100644
--- a/docs/labguide/publication/openaccess.html
+++ b/docs/labguide/publication/openaccess.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="true">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/publication/science_communication.html b/docs/labguide/publication/science_communication.html
index 128df8d..cea0968 100644
--- a/docs/labguide/publication/science_communication.html
+++ b/docs/labguide/publication/science_communication.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="true">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/research/code_management.html b/docs/labguide/research/code_management.html
index 60210b9..3be209e 100644
--- a/docs/labguide/research/code_management.html
+++ b/docs/labguide/research/code_management.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
@@ -385,17 +425,21 @@ <h1>Code management and sharing</h1>
 <section id="code-management" class="level2">
 <h2 class="anchored" data-anchor-id="code-management">Code management</h2>
 <ul>
-<li><p>All code should be managed using a version control system, preferably git.</p>
+<li>All code should be managed using a version control system, preferably git.
 <ul>
 <li>There are many resources online for learning git. A good starting point is <a href="https://stackoverflow.com/questions/315911/git-for-beginners-the-definitive-practical-guide">Git for beginners: The definitive practical guide</a>.</li>
 <li>Git questions can be addressed to the #git channel on the Poldracklab Slack.</li>
 </ul></li>
-<li><p>Code should be regularly pushed to a remote server, preferably Github.</p>
+<li>Code should be regularly pushed to a remote server, preferably Github.
 <ul>
 <li>Our default is that all repositories for research projects will be public, unless there is a strong reason to keep it private.</li>
 </ul></li>
-<li><p>Any substantive code copied or adapted from another source (e.g.&nbsp;stackoverflow) should be attributed to the source (including the URL of the source).</p></li>
-<li><p>Care must be taken to avoid sharing identifiable data, private passwords, AWS credentials, and other confidential information when using Github.</p>
+<li>Any substantive code copied or adapted from another source (e.g.&nbsp;stackoverflow) should be attributed to the source (including the URL of the source).
+<ul>
+<li>References to the copied or adapted sources should be added to the script files where they are written (preferably on the line before the source).</li>
+<li>Create a <code>notices.md</code> <a href="https://github.com/github/opensource.guide/blob/main/notices.md">following this template</a> to reference larger portions of code that were copied or adapted to your project.</li>
+</ul></li>
+<li>Care must be taken to avoid sharing identifiable data, private passwords, AWS credentials, and other confidential information when using Github.
 <ul>
 <li>Any private information should be stored in a separate text file that is read in by the code, and those files should be added to the <code>.gitignore</code> file so that they will not be checked in.</li>
 <li>Any accidental breach should be dealt with and reported to Dr.&nbsp;Poldrack and other relevant parties immediately.</li>
diff --git a/docs/labguide/research/coding_standards.html b/docs/labguide/research/coding_standards.html
index 0776fbc..2b119d6 100644
--- a/docs/labguide/research/coding_standards.html
+++ b/docs/labguide/research/coding_standards.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/research/data_analysis_procedures.html b/docs/labguide/research/data_analysis_procedures.html
index f49a04e..1d4fe76 100644
--- a/docs/labguide/research/data_analysis_procedures.html
+++ b/docs/labguide/research/data_analysis_procedures.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/research/data_management.html b/docs/labguide/research/data_management.html
index 7aac3a6..093d0b6 100644
--- a/docs/labguide/research/data_management.html
+++ b/docs/labguide/research/data_management.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/research/documentation.html b/docs/labguide/research/documentation.html
index 7483eda..9cfc22e 100644
--- a/docs/labguide/research/documentation.html
+++ b/docs/labguide/research/documentation.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/research/human_subjects.html b/docs/labguide/research/human_subjects.html
index 3bb1c7c..b02b21c 100644
--- a/docs/labguide/research/human_subjects.html
+++ b/docs/labguide/research/human_subjects.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
   </div>
 </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link active">
@@ -302,13 +342,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
@@ -380,6 +420,7 @@ <h1>Human subjects research</h1>
 <ul>
 <li>All lab members engaged in research must complete the relevant human subjects training through <a href="https://researchcompliance.stanford.edu/panels/hs/forms/training/citi">CITI</a>. A detailed list of relevant training courses is provided to new members as part of the lab’s internal onboarding materials.<br>
 </li>
+<li>If unsure if you are doing human subjects research, you can use the <a href="https://grants.nih.gov/policy/humansubjects/hs-decision.htm">NIH Decision Tool</a></li>
 <li>No personal identifiers should ever be associated with data recorded in the laboratory. This includes the <a href="https://cphs.berkeley.edu/hipaa/hipaa18.html">18 identifiers specified by HIPAA</a>, as well as any other identifiers that could potentially be used to re-identify an individual.</li>
 <li>All brain imaging data should be defaced prior to analysis and sharing. Behavioural data should not contain personal identifiers (such as for example Amazon Turk ID for data collected online).<br>
 </li>
@@ -389,6 +430,7 @@ <h1>Human subjects research</h1>
 <li>IRB maintenance is done by the research coordinators or the person leading the project.<br>
 </li>
 <li>All projects considered a clinical trial should be posted on ClinicalTrials.gov</li>
+<li>For more information on ethics regarding human subject research, you can watch Stanford’s <a href="https://med.stanford.edu/bioethics/education/rcr/med-255-videos.html">MED 255 videos on Biomedical Ethics</a></li>
 </ul>
 
 
diff --git a/docs/labguide/research/intellectual_property.html b/docs/labguide/research/intellectual_property.html
index a56433b..ce53518 100644
--- a/docs/labguide/research/intellectual_property.html
+++ b/docs/labguide/research/intellectual_property.html
@@ -229,21 +229,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
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-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true">
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-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 show">  
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
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-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
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-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
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diff --git a/docs/labguide/research/preregistration.html b/docs/labguide/research/preregistration.html
index c4eeb78..47fab15 100644
--- a/docs/labguide/research/preregistration.html
+++ b/docs/labguide/research/preregistration.html
@@ -229,21 +229,61 @@
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 </li>
+          <li class="sidebar-item sidebar-item-section">
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
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-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true">
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-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true" aria-label="Toggle section">
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           </a> 
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-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 show">  
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   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
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-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
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-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
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   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/research/research.html b/docs/labguide/research/research.html
index ba1ad75..5d4489c 100644
--- a/docs/labguide/research/research.html
+++ b/docs/labguide/research/research.html
@@ -231,21 +231,61 @@
  <span class="menu-text">General lab policies</span></a>
   </div>
 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
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-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
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   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/labguide/research/statistical_methods.html b/docs/labguide/research/statistical_methods.html
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@@ -229,21 +229,61 @@
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 </li>
+          <li class="sidebar-item sidebar-item-section">
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
-  <a href="../../labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="../../labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
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 </li>
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-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../../labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true">
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-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="true" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-6" class="collapse list-unstyled sidebar-section depth2 show">  
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   <div class="sidebar-item-container"> 
   <a href="../../labguide/research/human_subjects.html" class="sidebar-item-text sidebar-link">
@@ -302,13 +342,13 @@
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
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   <a href="../../labguide/publication/authorship.html" class="sidebar-item-text sidebar-link">
diff --git a/docs/people.html b/docs/people.html
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--- a/docs/people.html
+++ b/docs/people.html
@@ -289,21 +289,61 @@
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 </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
-  <a href="./labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="./labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Computing</span></a>
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 </li>
           <li class="sidebar-item sidebar-item-section">
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
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+ <span class="menu-text">Job submission on Sherlock</span></a>
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+  <div class="sidebar-item-container"> 
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+ <span class="menu-text">Data management on Sherlock</span></a>
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@@ -489,7 +529,7 @@ <h2 class="anchored">Graduate Students</h2>
   
   <li>Nastasia Klevak <a style="color: inherit;" href="https://orcid.org/0009-0004-1000-9532"><img src="https://info.orcid.org/wp-content/uploads/2019/11/orcid_16x16.png" alt="ORCID"></a></li>
   
-  <li>Jocelyn Ricard</li>
+  <li><a href="http://ricardjocelyn.github.io">Jocelyn Ricard</a> <a style="color: inherit;" href="https://orcid.org/0000-0001-9605-9389"><img src="https://info.orcid.org/wp-content/uploads/2019/11/orcid_16x16.png" alt="ORCID"></a></li>
   
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diff --git a/docs/positions.html b/docs/positions.html
index 6d6a235..fa5eb54 100644
--- a/docs/positions.html
+++ b/docs/positions.html
@@ -229,21 +229,61 @@
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+ <span class="menu-text">Access and resources</span></a>
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+ <span class="menu-text">Job submission on Sherlock</span></a>
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+ <span class="menu-text">Access and resources</span></a>
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+ <span class="menu-text">Job submission on Sherlock</span></a>
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+</li>
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+  <div class="sidebar-item-container"> 
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@@ -302,13 +342,13 @@
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           </a> 
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@@ -385,7 +425,7 @@ <h1 class="title">Publications</h1>
 </header>
 
 
-<div id="f22b46b6" class="cell" data-message="false" data-execution_count="1">
+<div id="03eab950" class="cell" data-message="false" data-execution_count="1">
 <section id="section" class="level3">
 <h3 class="anchored" data-anchor-id="section">2025</h3>
 <p>Quah SKL, Jo B, Geniesse C, Uddin LQ, Mumford JA, Barch DM, Fair DA, Gotlib IH, Poldrack RA, Saggar M (2025). A data-driven latent variable approach to validating the research domain criteria framework. <em>Nat Commun, 16</em>, 830. <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11743195">OA</a> <a href="https://doi.org/10.1038/s41467-025-55831-z">DOI</a></p>
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@@ -231,21 +231,61 @@
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+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+      </ul>
+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
  <span class="menu-text">Research practices</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
       </div>
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       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
  <span class="menu-text">Publication and dissemination</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
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diff --git a/docs/search.json b/docs/search.json
index 3840df0..405aba1 100644
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-    "text": "This section of the guide is a first-person perspective from Dr. Poldrack.\n\n\n\n\n\nI am affiliated with several graduate programs at Stanford:\n\nPsychology\nNeuroscience\nBioengineering\n[Biomedical Data Science]https://dbds.stanford.edu/) (BMI)\n\n\n\n\n\nIn choosing a program, there are several important differences:\n\nResearch: While most of these programs are fairly flexible, there are generally some expectations regarding the kind of research you will do, depending on the specific program. For example, if you are joining the BMI program then your work is expected to have at least some focus on novel data analysis or informatics methods, whereas if you are joining Psychology your work is expected to make some contact with psychological function. Having said that, most of what we do in our lab could be done by a student in any of these programs.\nCoursework: Perhaps the biggest difference between programs is the kind of courses you are required to take. Each program has a set of core requirements. In psychology, you will take a number of core courses in different areas of psychology (cognitive, neuroscience, social, affective, developmental). In the neuroscience program you will take a set of core modules spanning different areas of neuroscience (including one on cognitive neuroscience that Justin Gardner and I teach), whereas in BMI you take core courses around informatics-related topics. In each program you will also take elective courses (often outside the department) that establish complementary core knowledge that is important for your particular research; for example, you can take courses in our world-class statistics department regardless of which program you enroll in. One way to think about this is: What do you want to learn about that is outside of your specific content area? Take a look at the core courses in each program and see which ones interest you the most.\nFirst-year experience: In Psychology, students generally jump straight into a specific lab (or a collaboration between labs), and spend their first year doing a first-year project that they present to their area meeting at the end of the year. In Neuroscience and BMI, students do rotations in multiple labs in their first year, and are expected to pick a lab by the end of their first year.\nAdmissions: All of these programs are highly selective, but each differs in the nature of its admissions process. At one end of the spectrum is the Psychology admissions process, where initial decisions for who to interview are made by the combined faculty within each area of the department. At the other end is the Neuroscience program, where initial decisions are made by an admissions committee. As a generalization, I would say that the Psychology process is better for candidates whose interests and experience fit very closely with a specific PI or set of PIs, whereas the committee process caters towards candidates who may not have settled on a specific topic or PI.\nCareer positioning: I think that the specific department that one graduates from matters a lot less than people think it does. For example, I have been in psychology departments that have hired faculty with PhDs in physics, applied mathematics, and computer science. I think that the work that you do and the skills that you acquire ultimately matter a lot more than the name of the program that is listed on your diploma. Having said that, you ultimately do need to position yourself so that a particular department will feel that you “fit” with them; this is often a challenge for people working on interdisciplinary topics, where sometimes it can be difficult to find a department who feels that the person fits well.\n\n\n\n\nThere are always more qualified applicants than there are spots in our graduate programs, and there is no way to guarantee admission to any particular program. On the flipside, there are also no absolute requirements: we look at the whole picture, and other factors can sometimes outweigh a weaker academic record. There are a few factors that are particularly important for admission to my lab:\n\nResearch experience: It is very rare for someone to be accepted into any of the programs I am affiliated with at Stanford without significant research experience. Sometimes this can be obtained as an undergraduate, but more often successful applicants to our program have spent at least a year working as a research assistant in an active research laboratory. There are a couple of important reasons for this. First, we want you to understand what you are getting into; many people have rosy ideas of what it’s like to be a scientist, which can fall away pretty quickly in light of the actual experience of doing science. Spending some time in a lab helps you make sure that this is how you want to spend your life. In addition, it provides you with someone who can write a recommendation letter that speaks very directly to your potential as a researcher. Letters are a very important part of the admissions process, and the most effective letters are those that go into specific detail about your abilities, aptitude, and motivation.\nTechnical skills: The research that we do in our lab is highly technical, requiring knowledge of computing systems, programming, and math/statistics. I would say that decent programming ability is a pretty firm prerequisite for entering my lab; once you enter the lab I want you to be able to jump directly into doing science, and this just can’t happen if you have to spend a year teaching yourself how to program from scratch. More generally, we expect you to be able to pick up new technical topics easily; I don’t expect students to necessarily show up knowing how a reinforcement learning model works, but I expect them to be able to go and figure it out on their own by reading the relevant papers and then implement it on their own. The best way to demonstrate programming ability is to show a specific project that you have worked on. This could be an open source project that you have contributed to, or a project that you did on the side for fun (for example, mine your own social media feed, or program a cognitive task and measure how your own behavior changes from day to day). If you don’t currently know how to program, see my post on learning to program from scratch, and get going!\n\nRisk taking and resilience: If we are doing interesting science then things are going to fail, and we have to learn from those failures and move on.  I want to know that you are someone who is willing to go out on a limb to try something risky, and can handle the inevitable failures gracefully.  Rather than seeing a statement of purpose that only lists all of your successes, I find it very useful to also know about risks you have taken (be they physical, social, or emotional), challenges you have faced, failures you have experienced, and most importantly what you learned from all of these experiences.\n\n\n\n\n\nDifferent advisers have different philosophies, and it’s important to be sure that you pick an advisor whose style is right for you. I would say that the most important characteristic of my style is that I foster independent thinking in my trainees. Publishing papers is important, but not as important as developing one’s ability to conceive novel and interesting questions and ask them in a rigorous way. This means that beyond the first year project, I don’t generally hand my students problems to work on; rather, I expect them to come up with their own questions, and then we work together to devise the right experiments to test them. Another important thing to know is that I try to motivate by example, rather than by command. I rarely breathe down my trainees necks about getting their work done, because I work on the assumption that they will be self-motivated. On the other hand, I’m fairly hands-on in the sense that I still love to get deep in the weeds of experimental design and data analysis; for example, I will regularly code alongside lab members. I would also add that I am highly amenable to joint mentorship with other faculty.\n\n\n\nI have instituted a policy that I will no longer meet one-on-one with potential graduate students prior to the application process to discuss potential admission into my lab, as this has the potential to exacerbate existing disparities in graduate school admissions. I am willing to meet with individuals (particularly those from underrepresented groups) to discuss the graduate admissions process and other academic issues more generally, as time permits.\n\n\n\n\n\n\n\nWe do not generally advertise postdoctoral positions, so if you are interested in a position in the lab, contact Dr. Poldrack directly. Be sure to send your CV, and explain in brief your research interests and why you think you would be a good fit for the lab.\nWe are particularly interested in hiring postdocs who bring diversity to the lab, either through their personal identity, research interests, or experience.\n\n\n\n\n\n\n\nGraduate students in the lab are expected to keep a running document (preferably a Google Doc) in which they report their progress every week along with any problems encountered.\n\n\n\nDr. Poldrack provides all lab members with access to a scheduling system with which they can schedule meetings during any open times on his calendar. - Upon request, lab members can schedule a regular standing meeting.\n\n\n\n\nI view mentorship as a life-long relationship, and you can view working with me as having a “Lifetime Guarantee” in the sense that I will always be there to help you, even long after you have left the lab – from letters of recommendation to career mentorship to personal advice.",
+    "text": "This section of the guide is a first-person perspective from Dr. Poldrack.\n\n\nWe are always looking for undergraduate students to get involved on a variety of projects! If you are a Stanford affiliate and in the area, feel free to fill out this form and we will reach out to you.\n\n\n\n\n\n\nI am affiliated with several graduate programs at Stanford:\n\nPsychology\nNeuroscience\nBioengineering\nBiomedical Data Science (BMI)\n\n\n\n\n\nIn choosing a program, there are several important differences:\n\nResearch: While most of these programs are fairly flexible, there are generally some expectations regarding the kind of research you will do, depending on the specific program. For example, if you are joining the BMI program then your work is expected to have at least some focus on novel data analysis or informatics methods, whereas if you are joining Psychology your work is expected to make some contact with psychological function. Having said that, most of what we do in our lab could be done by a student in any of these programs.\nCoursework: Perhaps the biggest difference between programs is the kind of courses you are required to take. Each program has a set of core requirements. In psychology, you will take a number of core courses in different areas of psychology (cognitive, neuroscience, social, affective, developmental). In the neuroscience program you will take a set of core modules spanning different areas of neuroscience (including one on cognitive neuroscience that Justin Gardner and I teach), whereas in BMI you take core courses around informatics-related topics. In each program you will also take elective courses (often outside the department) that establish complementary core knowledge that is important for your particular research; for example, you can take courses in our world-class statistics department regardless of which program you enroll in. One way to think about this is: What do you want to learn about that is outside of your specific content area? Take a look at the core courses in each program and see which ones interest you the most.\nFirst-year experience: In Psychology, students generally jump straight into a specific lab (or a collaboration between labs), and spend their first year doing a first-year project that they present to their area meeting at the end of the year. In Neuroscience and BMI, students do rotations in multiple labs in their first year, and are expected to pick a lab by the end of their first year.\nAdmissions: All of these programs are highly selective, but each differs in the nature of its admissions process. At one end of the spectrum is the Psychology admissions process, where initial decisions for who to interview are made by the combined faculty within each area of the department. At the other end is the Neuroscience program, where initial decisions are made by an admissions committee. As a generalization, I would say that the Psychology process is better for candidates whose interests and experience fit very closely with a specific PI or set of PIs, whereas the committee process caters towards candidates who may not have settled on a specific topic or PI.\nCareer positioning: I think that the specific department that one graduates from matters a lot less than people think it does. For example, I have been in psychology departments that have hired faculty with PhDs in physics, applied mathematics, and computer science. I think that the work that you do and the skills that you acquire ultimately matter a lot more than the name of the program that is listed on your diploma. Having said that, you ultimately do need to position yourself so that a particular department will feel that you “fit” with them; this is often a challenge for people working on interdisciplinary topics, where sometimes it can be difficult to find a department who feels that the person fits well.\n\n\n\n\nThere are always more qualified applicants than there are spots in our graduate programs, and there is no way to guarantee admission to any particular program. On the flipside, there are also no absolute requirements: we look at the whole picture, and other factors can sometimes outweigh a weaker academic record. There are a few factors that are particularly important for admission to my lab:\n\nResearch experience: It is very rare for someone to be accepted into any of the programs I am affiliated with at Stanford without significant research experience. Sometimes this can be obtained as an undergraduate, but more often successful applicants to our program have spent at least a year working as a research assistant in an active research laboratory. There are a couple of important reasons for this. First, we want you to understand what you are getting into; many people have rosy ideas of what it’s like to be a scientist, which can fall away pretty quickly in light of the actual experience of doing science. Spending some time in a lab helps you make sure that this is how you want to spend your life. In addition, it provides you with someone who can write a recommendation letter that speaks very directly to your potential as a researcher. Letters are a very important part of the admissions process, and the most effective letters are those that go into specific detail about your abilities, aptitude, and motivation.\nTechnical skills: The research that we do in our lab is highly technical, requiring knowledge of computing systems, programming, and math/statistics. I would say that decent programming ability is a pretty firm prerequisite for entering my lab; once you enter the lab I want you to be able to jump directly into doing science, and this just can’t happen if you have to spend a year teaching yourself how to program from scratch. More generally, we expect you to be able to pick up new technical topics easily; I don’t expect students to necessarily show up knowing how a reinforcement learning model works, but I expect them to be able to go and figure it out on their own by reading the relevant papers and then implement it on their own. The best way to demonstrate programming ability is to show a specific project that you have worked on. This could be an open source project that you have contributed to, or a project that you did on the side for fun (for example, mine your own social media feed, or program a cognitive task and measure how your own behavior changes from day to day). If you don’t currently know how to program, see my post on learning to program from scratch, and get going!\n\nRisk taking and resilience: If we are doing interesting science then things are going to fail, and we have to learn from those failures and move on.  I want to know that you are someone who is willing to go out on a limb to try something risky, and can handle the inevitable failures gracefully.  Rather than seeing a statement of purpose that only lists all of your successes, I find it very useful to also know about risks you have taken (be they physical, social, or emotional), challenges you have faced, failures you have experienced, and most importantly what you learned from all of these experiences.\n\n\n\n\n\nDifferent advisers have different philosophies, and it’s important to be sure that you pick an advisor whose style is right for you. I would say that the most important characteristic of my style is that I foster independent thinking in my trainees. Publishing papers is important, but not as important as developing one’s ability to conceive novel and interesting questions and ask them in a rigorous way. This means that beyond the first year project, I don’t generally hand my students problems to work on; rather, I expect them to come up with their own questions, and then we work together to devise the right experiments to test them. Another important thing to know is that I try to motivate by example, rather than by command. I rarely breathe down my trainees necks about getting their work done, because I work on the assumption that they will be self-motivated. On the other hand, I’m fairly hands-on in the sense that I still love to get deep in the weeds of experimental design and data analysis; for example, I will regularly code alongside lab members. I would also add that I am highly amenable to joint mentorship with other faculty.\n\n\n\nI have instituted a policy that I will no longer meet one-on-one with potential graduate students prior to the application process to discuss potential admission into my lab, as this has the potential to exacerbate existing disparities in graduate school admissions. I am willing to meet with individuals (particularly those from underrepresented groups) to discuss the graduate admissions process and other academic issues more generally, as time permits.\n\n\n\n\n\n\n\nWe do not generally advertise postdoctoral positions, so if you are interested in a position in the lab, contact Dr. Poldrack directly. Be sure to send your CV, and explain in brief your research interests and why you think you would be a good fit for the lab.\nWe are particularly interested in hiring postdocs who bring diversity to the lab, either through their personal identity, research interests, or experience.\n\n\n\n\n\n\n\nGraduate students in the lab are expected to keep suitable documentation for all research activities (i.e. a github log, a google doc, etc).\n\n\n\nDr. Poldrack provides all lab members with access to a scheduling system with which they can schedule meetings during any open times on his calendar. - Upon request, lab members can schedule a regular standing meeting.\n\n\n\n\nI view mentorship as a life-long relationship, and you can view working with me as having a “Lifetime Guarantee” in the sense that I will always be there to help you, even long after you have left the lab – from letters of recommendation to career mentorship to personal advice.",
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-    "text": "I am affiliated with several graduate programs at Stanford:\n\nPsychology\nNeuroscience\nBioengineering\n[Biomedical Data Science]https://dbds.stanford.edu/) (BMI)\n\n\n\n\n\nIn choosing a program, there are several important differences:\n\nResearch: While most of these programs are fairly flexible, there are generally some expectations regarding the kind of research you will do, depending on the specific program. For example, if you are joining the BMI program then your work is expected to have at least some focus on novel data analysis or informatics methods, whereas if you are joining Psychology your work is expected to make some contact with psychological function. Having said that, most of what we do in our lab could be done by a student in any of these programs.\nCoursework: Perhaps the biggest difference between programs is the kind of courses you are required to take. Each program has a set of core requirements. In psychology, you will take a number of core courses in different areas of psychology (cognitive, neuroscience, social, affective, developmental). In the neuroscience program you will take a set of core modules spanning different areas of neuroscience (including one on cognitive neuroscience that Justin Gardner and I teach), whereas in BMI you take core courses around informatics-related topics. In each program you will also take elective courses (often outside the department) that establish complementary core knowledge that is important for your particular research; for example, you can take courses in our world-class statistics department regardless of which program you enroll in. One way to think about this is: What do you want to learn about that is outside of your specific content area? Take a look at the core courses in each program and see which ones interest you the most.\nFirst-year experience: In Psychology, students generally jump straight into a specific lab (or a collaboration between labs), and spend their first year doing a first-year project that they present to their area meeting at the end of the year. In Neuroscience and BMI, students do rotations in multiple labs in their first year, and are expected to pick a lab by the end of their first year.\nAdmissions: All of these programs are highly selective, but each differs in the nature of its admissions process. At one end of the spectrum is the Psychology admissions process, where initial decisions for who to interview are made by the combined faculty within each area of the department. At the other end is the Neuroscience program, where initial decisions are made by an admissions committee. As a generalization, I would say that the Psychology process is better for candidates whose interests and experience fit very closely with a specific PI or set of PIs, whereas the committee process caters towards candidates who may not have settled on a specific topic or PI.\nCareer positioning: I think that the specific department that one graduates from matters a lot less than people think it does. For example, I have been in psychology departments that have hired faculty with PhDs in physics, applied mathematics, and computer science. I think that the work that you do and the skills that you acquire ultimately matter a lot more than the name of the program that is listed on your diploma. Having said that, you ultimately do need to position yourself so that a particular department will feel that you “fit” with them; this is often a challenge for people working on interdisciplinary topics, where sometimes it can be difficult to find a department who feels that the person fits well.\n\n\n\n\nThere are always more qualified applicants than there are spots in our graduate programs, and there is no way to guarantee admission to any particular program. On the flipside, there are also no absolute requirements: we look at the whole picture, and other factors can sometimes outweigh a weaker academic record. There are a few factors that are particularly important for admission to my lab:\n\nResearch experience: It is very rare for someone to be accepted into any of the programs I am affiliated with at Stanford without significant research experience. Sometimes this can be obtained as an undergraduate, but more often successful applicants to our program have spent at least a year working as a research assistant in an active research laboratory. There are a couple of important reasons for this. First, we want you to understand what you are getting into; many people have rosy ideas of what it’s like to be a scientist, which can fall away pretty quickly in light of the actual experience of doing science. Spending some time in a lab helps you make sure that this is how you want to spend your life. In addition, it provides you with someone who can write a recommendation letter that speaks very directly to your potential as a researcher. Letters are a very important part of the admissions process, and the most effective letters are those that go into specific detail about your abilities, aptitude, and motivation.\nTechnical skills: The research that we do in our lab is highly technical, requiring knowledge of computing systems, programming, and math/statistics. I would say that decent programming ability is a pretty firm prerequisite for entering my lab; once you enter the lab I want you to be able to jump directly into doing science, and this just can’t happen if you have to spend a year teaching yourself how to program from scratch. More generally, we expect you to be able to pick up new technical topics easily; I don’t expect students to necessarily show up knowing how a reinforcement learning model works, but I expect them to be able to go and figure it out on their own by reading the relevant papers and then implement it on their own. The best way to demonstrate programming ability is to show a specific project that you have worked on. This could be an open source project that you have contributed to, or a project that you did on the side for fun (for example, mine your own social media feed, or program a cognitive task and measure how your own behavior changes from day to day). If you don’t currently know how to program, see my post on learning to program from scratch, and get going!\n\nRisk taking and resilience: If we are doing interesting science then things are going to fail, and we have to learn from those failures and move on.  I want to know that you are someone who is willing to go out on a limb to try something risky, and can handle the inevitable failures gracefully.  Rather than seeing a statement of purpose that only lists all of your successes, I find it very useful to also know about risks you have taken (be they physical, social, or emotional), challenges you have faced, failures you have experienced, and most importantly what you learned from all of these experiences.\n\n\n\n\n\nDifferent advisers have different philosophies, and it’s important to be sure that you pick an advisor whose style is right for you. I would say that the most important characteristic of my style is that I foster independent thinking in my trainees. Publishing papers is important, but not as important as developing one’s ability to conceive novel and interesting questions and ask them in a rigorous way. This means that beyond the first year project, I don’t generally hand my students problems to work on; rather, I expect them to come up with their own questions, and then we work together to devise the right experiments to test them. Another important thing to know is that I try to motivate by example, rather than by command. I rarely breathe down my trainees necks about getting their work done, because I work on the assumption that they will be self-motivated. On the other hand, I’m fairly hands-on in the sense that I still love to get deep in the weeds of experimental design and data analysis; for example, I will regularly code alongside lab members. I would also add that I am highly amenable to joint mentorship with other faculty.\n\n\n\nI have instituted a policy that I will no longer meet one-on-one with potential graduate students prior to the application process to discuss potential admission into my lab, as this has the potential to exacerbate existing disparities in graduate school admissions. I am willing to meet with individuals (particularly those from underrepresented groups) to discuss the graduate admissions process and other academic issues more generally, as time permits.",
+    "text": "I am affiliated with several graduate programs at Stanford:\n\nPsychology\nNeuroscience\nBioengineering\nBiomedical Data Science (BMI)\n\n\n\n\n\nIn choosing a program, there are several important differences:\n\nResearch: While most of these programs are fairly flexible, there are generally some expectations regarding the kind of research you will do, depending on the specific program. For example, if you are joining the BMI program then your work is expected to have at least some focus on novel data analysis or informatics methods, whereas if you are joining Psychology your work is expected to make some contact with psychological function. Having said that, most of what we do in our lab could be done by a student in any of these programs.\nCoursework: Perhaps the biggest difference between programs is the kind of courses you are required to take. Each program has a set of core requirements. In psychology, you will take a number of core courses in different areas of psychology (cognitive, neuroscience, social, affective, developmental). In the neuroscience program you will take a set of core modules spanning different areas of neuroscience (including one on cognitive neuroscience that Justin Gardner and I teach), whereas in BMI you take core courses around informatics-related topics. In each program you will also take elective courses (often outside the department) that establish complementary core knowledge that is important for your particular research; for example, you can take courses in our world-class statistics department regardless of which program you enroll in. One way to think about this is: What do you want to learn about that is outside of your specific content area? Take a look at the core courses in each program and see which ones interest you the most.\nFirst-year experience: In Psychology, students generally jump straight into a specific lab (or a collaboration between labs), and spend their first year doing a first-year project that they present to their area meeting at the end of the year. In Neuroscience and BMI, students do rotations in multiple labs in their first year, and are expected to pick a lab by the end of their first year.\nAdmissions: All of these programs are highly selective, but each differs in the nature of its admissions process. At one end of the spectrum is the Psychology admissions process, where initial decisions for who to interview are made by the combined faculty within each area of the department. At the other end is the Neuroscience program, where initial decisions are made by an admissions committee. As a generalization, I would say that the Psychology process is better for candidates whose interests and experience fit very closely with a specific PI or set of PIs, whereas the committee process caters towards candidates who may not have settled on a specific topic or PI.\nCareer positioning: I think that the specific department that one graduates from matters a lot less than people think it does. For example, I have been in psychology departments that have hired faculty with PhDs in physics, applied mathematics, and computer science. I think that the work that you do and the skills that you acquire ultimately matter a lot more than the name of the program that is listed on your diploma. Having said that, you ultimately do need to position yourself so that a particular department will feel that you “fit” with them; this is often a challenge for people working on interdisciplinary topics, where sometimes it can be difficult to find a department who feels that the person fits well.\n\n\n\n\nThere are always more qualified applicants than there are spots in our graduate programs, and there is no way to guarantee admission to any particular program. On the flipside, there are also no absolute requirements: we look at the whole picture, and other factors can sometimes outweigh a weaker academic record. There are a few factors that are particularly important for admission to my lab:\n\nResearch experience: It is very rare for someone to be accepted into any of the programs I am affiliated with at Stanford without significant research experience. Sometimes this can be obtained as an undergraduate, but more often successful applicants to our program have spent at least a year working as a research assistant in an active research laboratory. There are a couple of important reasons for this. First, we want you to understand what you are getting into; many people have rosy ideas of what it’s like to be a scientist, which can fall away pretty quickly in light of the actual experience of doing science. Spending some time in a lab helps you make sure that this is how you want to spend your life. In addition, it provides you with someone who can write a recommendation letter that speaks very directly to your potential as a researcher. Letters are a very important part of the admissions process, and the most effective letters are those that go into specific detail about your abilities, aptitude, and motivation.\nTechnical skills: The research that we do in our lab is highly technical, requiring knowledge of computing systems, programming, and math/statistics. I would say that decent programming ability is a pretty firm prerequisite for entering my lab; once you enter the lab I want you to be able to jump directly into doing science, and this just can’t happen if you have to spend a year teaching yourself how to program from scratch. More generally, we expect you to be able to pick up new technical topics easily; I don’t expect students to necessarily show up knowing how a reinforcement learning model works, but I expect them to be able to go and figure it out on their own by reading the relevant papers and then implement it on their own. The best way to demonstrate programming ability is to show a specific project that you have worked on. This could be an open source project that you have contributed to, or a project that you did on the side for fun (for example, mine your own social media feed, or program a cognitive task and measure how your own behavior changes from day to day). If you don’t currently know how to program, see my post on learning to program from scratch, and get going!\n\nRisk taking and resilience: If we are doing interesting science then things are going to fail, and we have to learn from those failures and move on.  I want to know that you are someone who is willing to go out on a limb to try something risky, and can handle the inevitable failures gracefully.  Rather than seeing a statement of purpose that only lists all of your successes, I find it very useful to also know about risks you have taken (be they physical, social, or emotional), challenges you have faced, failures you have experienced, and most importantly what you learned from all of these experiences.\n\n\n\n\n\nDifferent advisers have different philosophies, and it’s important to be sure that you pick an advisor whose style is right for you. I would say that the most important characteristic of my style is that I foster independent thinking in my trainees. Publishing papers is important, but not as important as developing one’s ability to conceive novel and interesting questions and ask them in a rigorous way. This means that beyond the first year project, I don’t generally hand my students problems to work on; rather, I expect them to come up with their own questions, and then we work together to devise the right experiments to test them. Another important thing to know is that I try to motivate by example, rather than by command. I rarely breathe down my trainees necks about getting their work done, because I work on the assumption that they will be self-motivated. On the other hand, I’m fairly hands-on in the sense that I still love to get deep in the weeds of experimental design and data analysis; for example, I will regularly code alongside lab members. I would also add that I am highly amenable to joint mentorship with other faculty.\n\n\n\nI have instituted a policy that I will no longer meet one-on-one with potential graduate students prior to the application process to discuss potential admission into my lab, as this has the potential to exacerbate existing disparities in graduate school admissions. I am willing to meet with individuals (particularly those from underrepresented groups) to discuss the graduate admissions process and other academic issues more generally, as time permits.",
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-    "text": "Graduate students in the lab are expected to keep a running document (preferably a Google Doc) in which they report their progress every week along with any problems encountered.\n\n\n\nDr. Poldrack provides all lab members with access to a scheduling system with which they can schedule meetings during any open times on his calendar. - Upon request, lab members can schedule a regular standing meeting.",
+    "text": "Graduate students in the lab are expected to keep suitable documentation for all research activities (i.e. a github log, a google doc, etc).\n\n\n\nDr. Poldrack provides all lab members with access to a scheduling system with which they can schedule meetings during any open times on his calendar. - Upon request, lab members can schedule a regular standing meeting.",
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-    "text": "The Poldracklab has a long history of remote members, and we support the needs of lab members who must work remotely.\n\nAny remote work must be discussed with and approved by Dr. Poldrack and arranged in accordance with Stanford University Policies on Staff Telecommuting and Remote Working.",
+    "text": "This section describes getting initial access to Sherlock and monitoring available resources.\n\n\n\n\nIf you are a new member of a lab at stanford, you will need to have your PI email Sherlock’s support to get your SUNet account configured for use with computing resources. See the Sherlock getting started guide for details.\nOnce you have an account set up with your SUNet ID &lt;username&gt;, you can access Sherlock via any SSH client client. If you are using a UNIX-like system (e.g., MacOS) and you are using terminal to connect to sherlock, a useful resource is to set up an ssh config file. You can do this by editing or creating the file ~/.ssh/config, and adding the following lines:\n\n\n~/.ssh/config\n\nHost sherlock\n    HostName login.sherlock.stanford.edu\n    User &lt;username&gt;\n    KexAlgorithms +diffie-hellman-group-exchange-sha1\n\nNavigating to terminal, you can login to Sherlock using:\n$ ssh sherlock\nand then follow the remainder of the instructions Sherlock connection guide.\n\n\n\nThe Stanford filesystems have fixed allocations for individuals and groups. As such, it will be useful for you to be able to determine how much space you/the group have, so that you can optimally manage your resources. For extended details on storage with Sherlock, check out Sherlock storage guide.\nThere are several commands that we find extremely useful for working on Sherlock. We will go over several of them.\nSherlock has fixed allocations for the storage of individuals and groups. As such, you will be required to properly manage your storage allocations, re-allocating data to group-level directories as necessary.\nTo check your quotas for your group &lt;groupname&gt;, you can use the sh_quota command:\n$ sh_quota\n+---------------------------------------------------------------------------+\n| Disk usage for user &lt;username&gt; (group: &lt;groupname&gt;)                       |\n+---------------------------------------------------------------------------+\n|   Filesystem |  volume /   limit                  | inodes /  limit       |\n+---------------------------------------------------------------------------+\n          HOME |   9.4GB /  15.0GB [||||||     62%] |      - /      - (  -%)\n    GROUP_HOME | 562.6GB /   1.0TB [|||||      56%] |      - /      - (  -%)\n       SCRATCH |  65.0GB / 100.0TB [            0%] | 143.8K /  20.0M (  0%)\n GROUP_SCRATCH | 172.2GB / 100.0TB [            0%] |  53.4K /  20.0M (  0%)\n           OAK |  30.8TB / 240.0TB [|          12%] |   6.6M /  36.0M ( 18%)\n+---------------------------------------------------------------------------+\nsh_quota is a Sherlock-specific command that provides a general overview for all partitions a user has access to. Documentation is provided on their wiki. When your home directory begins to get filled, it may be valuable to consider moving files to scratch directories, or group directories. HOME, GROUP_HOME, and OAK are persistent storage; *SCRATCH directories are subject to purging.\nAnother useful tool is the disk usage command du. A useful and more interacrtive version of this command is ncdu. To use ncdu, add the following line to the bottom of your ~/.bash_profile, which will load the ncdu module each time you log in to Sherlock:\nml system ncdu\nand then update your ~/.bash_profile for the current session with:\n$ source ~/.bash_profile\nwhich will allow the current session to load the new module updated in your bash profile for ncdu. For future login sessions, re-sourcing your ~/.bash_profile is unnecessary.\nIn the present and future login sessions, you can access the ncdu command via:\n$ ncdu &lt;folder&gt;\nwhich will launch an interactive window for monitoring directory sizes from the folder specified by &lt;folder&gt;. Sherlock recommends running it in an interactive job. This can be useful when identifying where quota usage is being allocated.",
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-    "text": "We aim to promote sustainable creativity and productivity for all of our members, which can’t be achieved without a healthy balance between work and personal life.\nNo lab member is expected to work in ways that interfere with a healthy life. Work should not be so excessive as to interfere with sleep, exercise, or family/personal time.\nLab members are expected to be proactive regarding deadlines, to avoid last-minute scrambles. Dr. Poldrack and other lab members may decline to support submissions that are prepared with insufficient lead time.\nWe aim to promote an environment that is understanding and supportive of individuals with child care and adult care responsibilities. This includes but is not limited to offering flexible work hours to help individuals with familial responsibilities.\n\nThe lab is committed to fully supporting individuals with chronic physical and/or mental illnesses, as well as individuals with accessibility needs. No lab member will be discriminated against because of their chronic diagnosis or health-related limitations of their ability to work. Lab members are encouraged to prioritize their physical and mental health as much as possible, and the lab is prepared to support them in doing so.\nLab members who are seeking time off for health (including mental health) reasons are strongly encouraged, though absolutely not required, to speak with Dr. Poldrack about their concerns. Dr. Poldrack commits to approaching these conversations in a nonjudgmental and empathetic manner, and to working with all lab members to find a solution that works best for them.",
+    "text": "This section describes getting initial access to Sherlock and monitoring available resources.\n\n\n\n\nIf you are a new member of a lab at stanford, you will need to have your PI email Sherlock’s support to get your SUNet account configured for use with computing resources. See the Sherlock getting started guide for details.\nOnce you have an account set up with your SUNet ID &lt;username&gt;, you can access Sherlock via any SSH client client. If you are using a UNIX-like system (e.g., MacOS) and you are using terminal to connect to sherlock, a useful resource is to set up an ssh config file. You can do this by editing or creating the file ~/.ssh/config, and adding the following lines:\n\n\n~/.ssh/config\n\nHost sherlock\n    HostName login.sherlock.stanford.edu\n    User &lt;username&gt;\n    KexAlgorithms +diffie-hellman-group-exchange-sha1\n\nNavigating to terminal, you can login to Sherlock using:\n$ ssh sherlock\nand then follow the remainder of the instructions Sherlock connection guide.\n\n\n\nThe Stanford filesystems have fixed allocations for individuals and groups. As such, it will be useful for you to be able to determine how much space you/the group have, so that you can optimally manage your resources. For extended details on storage with Sherlock, check out Sherlock storage guide.\nThere are several commands that we find extremely useful for working on Sherlock. We will go over several of them.\nSherlock has fixed allocations for the storage of individuals and groups. As such, you will be required to properly manage your storage allocations, re-allocating data to group-level directories as necessary.\nTo check your quotas for your group &lt;groupname&gt;, you can use the sh_quota command:\n$ sh_quota\n+---------------------------------------------------------------------------+\n| Disk usage for user &lt;username&gt; (group: &lt;groupname&gt;)                       |\n+---------------------------------------------------------------------------+\n|   Filesystem |  volume /   limit                  | inodes /  limit       |\n+---------------------------------------------------------------------------+\n          HOME |   9.4GB /  15.0GB [||||||     62%] |      - /      - (  -%)\n    GROUP_HOME | 562.6GB /   1.0TB [|||||      56%] |      - /      - (  -%)\n       SCRATCH |  65.0GB / 100.0TB [            0%] | 143.8K /  20.0M (  0%)\n GROUP_SCRATCH | 172.2GB / 100.0TB [            0%] |  53.4K /  20.0M (  0%)\n           OAK |  30.8TB / 240.0TB [|          12%] |   6.6M /  36.0M ( 18%)\n+---------------------------------------------------------------------------+\nsh_quota is a Sherlock-specific command that provides a general overview for all partitions a user has access to. Documentation is provided on their wiki. When your home directory begins to get filled, it may be valuable to consider moving files to scratch directories, or group directories. HOME, GROUP_HOME, and OAK are persistent storage; *SCRATCH directories are subject to purging.\nAnother useful tool is the disk usage command du. A useful and more interacrtive version of this command is ncdu. To use ncdu, add the following line to the bottom of your ~/.bash_profile, which will load the ncdu module each time you log in to Sherlock:\nml system ncdu\nand then update your ~/.bash_profile for the current session with:\n$ source ~/.bash_profile\nwhich will allow the current session to load the new module updated in your bash profile for ncdu. For future login sessions, re-sourcing your ~/.bash_profile is unnecessary.\nIn the present and future login sessions, you can access the ncdu command via:\n$ ncdu &lt;folder&gt;\nwhich will launch an interactive window for monitoring directory sizes from the folder specified by &lt;folder&gt;. Sherlock recommends running it in an interactive job. This can be useful when identifying where quota usage is being allocated.",
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-    "text": "All researchers in the lab are expected to attend the weekly lab meeting, except in cases of unavoidable conflict (such as course scheduling). It generally lasts 1-2 hours and all the members are invited to share the main activities of the last week. Additional activities at the lab meeting include: presentations of research projects or data; talks by external speakers; discussions of specific research papers; code reviews in which a lab member’s code is reviewed online with a focus on refactoring.\n\nAll members of the information technology team are expected to attend the weekly IT meeting.\nDr. Poldrack relies primarily upon email for communication, and generally responds quickly to emails unless traveling or away from work. He expects lab members to respond to emails within one business day unless they are away from work (even if the response is simply to acknowledge receipt of the message).",
+    "text": "Important\n\n\n\nLogin nodes are shared among many users and therefore must not be used to run computationally intensive tasks. Those should be submitted to the scheduler which will dispatch them on compute nodes.\n\n\n\n\nYou can check available resources with the sh_part command:\n$ sh_part\n     QUEUE STA   FREE  TOTAL   FREE  TOTAL RESORC  OTHER MAXJOBTIME    CORES       NODE   GRES\n PARTITION TUS  CORES  CORES  NODES  NODES PENDNG PENDNG  DAY-HR:MN    /NODE     MEM-GB (COUNT)\n    normal   *    153   1792      0     84    23k    127    7-00:00    20-24    128-191 -\n    bigmem         29     88      0      2      0      8    1-00:00    32-56   512-3072 -\n       dev         31     40      0      2      0      0    0-02:00       20        128 -\n       gpu         47    172      0      8    116      1    7-00:00    20-24    191-256 gpu:4(S:0-1)(2),gpu:4(S:0)(6)\nThis will list out the compute resources available to you, so that you can determine the optimal resource to use.\n\n\n\nsh_dev sessions run on dedicated compute nodes, ensuring minimal wait times when you need to access a node for testing script, debug code or any kind of interactive work. sh_dev also provides X11 forwarding via the submission host (typically the login node you’re connected to) and can thus be used to run GUI applications.\nUsers can specify sh_dev calls with specific memory requests.\n\n\nIf you prefer to submit an existing job script or other executable as an interactive job, you can use the salloc command:\nsalloc script.sh\nsalloc will start a Slurm job and allocate resources for it, but it will not automatically connect you to the allocated node(s). It will only start a new shell on the same node you launched salloc from, and set up the appropriate $SLURM_* environment variables.\n\n\n\n\nMost large, long-running jobs on Sherlock should be submitted via the job scheduler.\nMost jobs can be submitted the the scheduler using the sbatch command. Sherlock provides documentation for how to generate sbatch submission scripts. There is also an experimental slurm-o-matic tool to help in generating these scripts interactively.\n\n\nBest practice before launching large, long-running jobs on Sherlock is to run a short test job to evaluate the time memory requirements. The basic idea is to run a small test job with minimal resource requirements—so the job will run quickly—then re-queue the job with optimized resource requests.\nJobs can be evaluated along three dimensions: memory, parallelization (i.e., number of nodes and CPUs), and run time. We briefly highlight why each axis is important below, as well as how to evaluate its requirements.\n\nMemory: Evaluating memory requirements of completed jobs is straightforward tools such as sacct (see ?@sec-acct). Requesting excessive memory and not using it will count against your FairShare score.\nParallelization: Evaluating how well the job performance scales with added CPUs can be done using seff (see Section 1.4.1). Requesting CPUs then not using them will still count against your FairShare score.\nRun Time: Requesting excess time for your jobs will not count against your FairShare score, but it will affect how quickly the scheduler allocates resources to your job.\n\nBelow, we provide more detailed resources (and example commands) for monitoring jobs.\n\n\n\n\n\nUsers can monitor the status of their currently running jobs on Sherlock with squeue:\nsqueue -u $USER\nThis command will monitor how long a job has been sitting on queue or actively running, depending on status.\n\n\n\nMore detailed information on running jobs can be found using clush, which can be loaded via the module system:\nml system py-clustershell\nclush -N -w @job:&lt;your Job ID&gt; top -b -n 1\nOn Sherlock, it provides an easy way to run commands on nodes your jobs are running on, and collect back information. In the above example, we use clush to execute the top command, which provides real-time monitoring of job resource usage. Many other uses are possible; for example,\nclush -w @j:&lt;your Job ID&gt; ps -u$USER -o%cpu,rss,cmd\nWill return the CPU and memory usage of all processes for a given job ID.\n\n\n\n\nOne application commonly run within Poldracklab is fMRIPrep. Since lab members will often submit many fMRIPrep jobs at the same time, it is best practice to submit these as an array job.\nWe provide an example fMRIPrep array job script below for running 5 individual subjects.\n\n\nsubmit_fmriprep_array.sh\n\n#!/bin/bash\n#\n#SBATCH --job-name=fMRIPrep\n#SBATCH --output=fmriprep.%j.out\n#SBATCH --time=1-00:00\n#SBATCH --cpus-per-task=16\n#SBATCH --mem-per-cpu=8GB\n#SBATCH --mail-user=&lt;your-email&gt;@stanford.edu\n#SBATCH --mail-type=FAIL\n#SBATCH --array=1-5\n#SBATCH -p russpold,owners,normal\n\n\n# Define directories\n\nDATADIR=&lt;/your/project/directory&gt;\nSCRATCH=&lt;/your/scratch/directory&gt;\nSIMGDIR=&lt;/your/project/directory/simgs&gt;\n\n# Begin work section\nsubj_list=(`find $DATADIR -maxdepth 1 -type d -name 'sub-*' -printf '%f\\n' | sort -n -ts -k2.1`)\nsub=\"${subj_list[$SLURM_ARRAY_TASK_ID]}\"\necho \"SUBJECT_ID: \" $sub\n\nsingularity run --cleanenv -B ${DATADIR}:/data:ro \\\n    -B ${SCRATCH}:/out \\\n    -B ${DATADIR}/license.txt:/license/license.txt:ro \\\n    ${SIMGDIR}/fmriprep-23-2-0.simg \\\n    /data /out participant \\\n        --participant-label ${sub} \\\n    --output-space MNI152NLin2009cAsym:res-2 \\\n    -w /out/workdir \\\n    --notrack \\\n        --fs-license-file /license/license.txt \n\n\n\n\n\nRegardless of whether your job was run in an interactive (i.e., using sh_dev) or non-interactive (i.e., using sbatch session), it is useful to evaluate how many resources they consumed after running:\n\n\nNominally, the fastest and easiest way to get a summary report, for a given job, is the “SLURM efficiency” tool, seff. This tool returns a simple, human-readable format report that includes both allocated as well as actually used resources (nodes, CPUs, memory, wall time).\nseff &lt;your Job ID&gt;\nGenerally speaking, seff reports can be used to determine how well (if at all) a job parallelizes, how much memory to request for future implementations of the job, and how much time to request. More granular reporting, however, is possible using the sacct command.\n\n\n\nMore rigorous resource analysis can be performed after a job has completed by using SLURM accounting, or sacct. Again, SLURM provides a rigorous documentation, including using --format= to define which columns to output and the various options that can constrain a query.\nsacct --user=$USER --start=2023-09-01 --end=2023-09-03 --format=jobid,jobname,partition,account,nnodes,ncpus,reqmem,maxrss,elapsed,totalcpu,state,reason",
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-    "text": "This guide provides details about the mission, values, and practices of the Poldrack Lab at Stanford. This guide is intended for:\n\nIndividuals who are joining the lab, to describe the standards and practices that they are expected to adhere to\nIndividuals who are considering joining the lab, to provide a picture of the lab environment and practices.\n\nAdditional contributions to this guide are welcome!\n\nIf you wish to comment on the content or make suggestions, please use the issues page.\nIf you wish to edit the content directly, please start by discussing your proposed change on the issues page. Once you have made sure that your proposed change doesn’t overlap with other ongoing work, you can fork the repository and submit a pull request with your proposed change. See this guide from the Turing Way for details on how to contribute via pull request.\n\nThis work is licensed under a Creative Commons Attribution 4.0 International License."
+    "text": "Important\n\n\n\nLogin nodes are shared among many users and therefore must not be used to run computationally intensive tasks. Those should be submitted to the scheduler which will dispatch them on compute nodes.\n\n\n\n\nYou can check available resources with the sh_part command:\n$ sh_part\n     QUEUE STA   FREE  TOTAL   FREE  TOTAL RESORC  OTHER MAXJOBTIME    CORES       NODE   GRES\n PARTITION TUS  CORES  CORES  NODES  NODES PENDNG PENDNG  DAY-HR:MN    /NODE     MEM-GB (COUNT)\n    normal   *    153   1792      0     84    23k    127    7-00:00    20-24    128-191 -\n    bigmem         29     88      0      2      0      8    1-00:00    32-56   512-3072 -\n       dev         31     40      0      2      0      0    0-02:00       20        128 -\n       gpu         47    172      0      8    116      1    7-00:00    20-24    191-256 gpu:4(S:0-1)(2),gpu:4(S:0)(6)\nThis will list out the compute resources available to you, so that you can determine the optimal resource to use.\n\n\n\nsh_dev sessions run on dedicated compute nodes, ensuring minimal wait times when you need to access a node for testing script, debug code or any kind of interactive work. sh_dev also provides X11 forwarding via the submission host (typically the login node you’re connected to) and can thus be used to run GUI applications.\nUsers can specify sh_dev calls with specific memory requests.\n\n\nIf you prefer to submit an existing job script or other executable as an interactive job, you can use the salloc command:\nsalloc script.sh\nsalloc will start a Slurm job and allocate resources for it, but it will not automatically connect you to the allocated node(s). It will only start a new shell on the same node you launched salloc from, and set up the appropriate $SLURM_* environment variables.\n\n\n\n\nMost large, long-running jobs on Sherlock should be submitted via the job scheduler.\nMost jobs can be submitted the the scheduler using the sbatch command. Sherlock provides documentation for how to generate sbatch submission scripts. There is also an experimental slurm-o-matic tool to help in generating these scripts interactively.\n\n\nBest practice before launching large, long-running jobs on Sherlock is to run a short test job to evaluate the time memory requirements. The basic idea is to run a small test job with minimal resource requirements—so the job will run quickly—then re-queue the job with optimized resource requests.\nJobs can be evaluated along three dimensions: memory, parallelization (i.e., number of nodes and CPUs), and run time. We briefly highlight why each axis is important below, as well as how to evaluate its requirements.\n\nMemory: Evaluating memory requirements of completed jobs is straightforward tools such as sacct (see ?@sec-acct). Requesting excessive memory and not using it will count against your FairShare score.\nParallelization: Evaluating how well the job performance scales with added CPUs can be done using seff (see Section 1.4.1). Requesting CPUs then not using them will still count against your FairShare score.\nRun Time: Requesting excess time for your jobs will not count against your FairShare score, but it will affect how quickly the scheduler allocates resources to your job.\n\nBelow, we provide more detailed resources (and example commands) for monitoring jobs.\n\n\n\n\n\nUsers can monitor the status of their currently running jobs on Sherlock with squeue:\nsqueue -u $USER\nThis command will monitor how long a job has been sitting on queue or actively running, depending on status.\n\n\n\nMore detailed information on running jobs can be found using clush, which can be loaded via the module system:\nml system py-clustershell\nclush -N -w @job:&lt;your Job ID&gt; top -b -n 1\nOn Sherlock, it provides an easy way to run commands on nodes your jobs are running on, and collect back information. In the above example, we use clush to execute the top command, which provides real-time monitoring of job resource usage. Many other uses are possible; for example,\nclush -w @j:&lt;your Job ID&gt; ps -u$USER -o%cpu,rss,cmd\nWill return the CPU and memory usage of all processes for a given job ID.\n\n\n\n\nOne application commonly run within Poldracklab is fMRIPrep. Since lab members will often submit many fMRIPrep jobs at the same time, it is best practice to submit these as an array job.\nWe provide an example fMRIPrep array job script below for running 5 individual subjects.\n\n\nsubmit_fmriprep_array.sh\n\n#!/bin/bash\n#\n#SBATCH --job-name=fMRIPrep\n#SBATCH --output=fmriprep.%j.out\n#SBATCH --time=1-00:00\n#SBATCH --cpus-per-task=16\n#SBATCH --mem-per-cpu=8GB\n#SBATCH --mail-user=&lt;your-email&gt;@stanford.edu\n#SBATCH --mail-type=FAIL\n#SBATCH --array=1-5\n#SBATCH -p russpold,owners,normal\n\n\n# Define directories\n\nDATADIR=&lt;/your/project/directory&gt;\nSCRATCH=&lt;/your/scratch/directory&gt;\nSIMGDIR=&lt;/your/project/directory/simgs&gt;\n\n# Begin work section\nsubj_list=(`find $DATADIR -maxdepth 1 -type d -name 'sub-*' -printf '%f\\n' | sort -n -ts -k2.1`)\nsub=\"${subj_list[$SLURM_ARRAY_TASK_ID]}\"\necho \"SUBJECT_ID: \" $sub\n\nsingularity run --cleanenv -B ${DATADIR}:/data:ro \\\n    -B ${SCRATCH}:/out \\\n    -B ${DATADIR}/license.txt:/license/license.txt:ro \\\n    ${SIMGDIR}/fmriprep-23-2-0.simg \\\n    /data /out participant \\\n        --participant-label ${sub} \\\n    --output-space MNI152NLin2009cAsym:res-2 \\\n    -w /out/workdir \\\n    --notrack \\\n        --fs-license-file /license/license.txt \n\n\n\n\n\nRegardless of whether your job was run in an interactive (i.e., using sh_dev) or non-interactive (i.e., using sbatch session), it is useful to evaluate how many resources they consumed after running:\n\n\nNominally, the fastest and easiest way to get a summary report, for a given job, is the “SLURM efficiency” tool, seff. This tool returns a simple, human-readable format report that includes both allocated as well as actually used resources (nodes, CPUs, memory, wall time).\nseff &lt;your Job ID&gt;\nGenerally speaking, seff reports can be used to determine how well (if at all) a job parallelizes, how much memory to request for future implementations of the job, and how much time to request. More granular reporting, however, is possible using the sacct command.\n\n\n\nMore rigorous resource analysis can be performed after a job has completed by using SLURM accounting, or sacct. Again, SLURM provides a rigorous documentation, including using --format= to define which columns to output and the various options that can constrain a query.\nsacct --user=$USER --start=2023-09-01 --end=2023-09-03 --format=jobid,jobname,partition,account,nnodes,ncpus,reqmem,maxrss,elapsed,totalcpu,state,reason",
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-    "text": "We affirm the importance and value of engaging with non-expert audiences, and support the efforts of lab members in service of science communication. We encourage lab members to work to develop their science communication skills and to seek out opportunities to engage with the public about science.\nIn some cases, laboratory findings may be of sufficient public interest to warrant a University press release. In these cases we will work with the University’s public relations team to develop a press release. In our interactions with the public relations team, we will express our intent to not exaggerate or oversimplify the findings.\nIf we are contacted by members of the press about our research, we will try to make ourselves available for comment to the extent possible. We will work to use accessible language while also communicating the nuances of our work. We may ask journalists to send us paraphrased versions of our quotes to check them for accuracy before the publication of any article, though we recognize that some journalists might not be willing to do so.",
+    "text": "In order to ensure that the environment remains welcoming and productive for everyone, we will conduct a yearly survey of lab members regarding the lab environment (link to example). This survey will be completed at the end of the Spring Quarter (in June).",
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-    "text": "The laboratory will generally fund the attendance of members to at least one conference per year, pending funding availability.\n\nWhile funding is usually tied to presenting at the meeting, in some cases the lab will fund members to attend who are not presenting, depending on the meeting location and funding availability.\nWe regularly fund the attendance of research assistants to conferences as we think this is an essential aspect of their training experience.\n\nConference abstract submissions must be completed at least one week before the final deadline, to allow coauthors sufficient time to review the submission.\nLab members are encouraged to find satellite opportunities (such as hackathons or workshops) to maximize the benefit of their conference travel.\nConferences we attend (roughly in order of frequency):\n\nOrganization for Human Brain Mapping (our primary meeting)\nCognitive Computational Neuroscience\nSociety for Neuroscience\nPsychonomic Society\nNeuroeconomics\nFLUX\nCognitive Neuroscience Society (CNS)",
+    "text": "Lab environment\nIn the Poldrack Lab, we want all of our lab members to feel valued, appreciated, safe, and free to be who they are. We embrace diversity and are committed to preventing discrimination against people based on gender identity or expression, sexual orientation, race, ethnicity, religion, age, neurodiversity, disability status, citizenship, or any other feature that makes them unique."
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+    "text": "All lab members and guests are expected to adhere to the following code of conduct. In addition, all Stanford University affiliates are required to adhere to the University Code of Conduct. For definitions of an act of intolerance & hate crime escalation policy please see this page on University AOI. If you wish to speak with someone outside of the lab regarding an incident that occurred in or outside of the lab, the university has this list of resources.",
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-    "text": "When we select journals for publication, we will prioritize publishing in journals that offer an Open Access option. However, we realize that sometimes the most appropriate journal for a particular paper will be one that does not offer this option.\nWhen project funding is not available for open access publication fees, Dr. Poldrack will cover these fees using unrestricted funds.",
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+    "text": "Statement of intent\nOur lab is dedicated to providing a safe and welcoming environment for everyone. We do not tolerate harassment for any form of identity such as but not limited to: sex, gender identity, age, sexual orientation, disability including mental illness, physical appearance, body size, race, ethnicity, religion (including the lack thereof), or socioeconomic status. We do not tolerate harassment of lab members or guests in any form. Sexual language and imagery is not appropriate for any lab event or venue, including talks, workshops, parties, Twitter and other online media.",
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-    "text": "When we select journals for publication, we will prioritize publishing in journals that offer an Open Access option. However, we realize that sometimes the most appropriate journal for a particular paper will be one that does not offer this option.\nWhen project funding is not available for open access publication fees, Dr. Poldrack will cover these fees using unrestricted funds.",
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+    "text": "Details of Lab Code of Conduct\n\nHarassment includes offensive verbal comments related to a person’s identity or presentation of their identity. This can include denigrating comments, microaggressions, or consistent interruption during talks or presentations\nSexual harassment includes: displays of sexual images in public lab spaces, deliberate intimidation, stalking/ following, coerced photography or recording, inappropriate physical contact, and unwelcome sexual attention.",
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-    "text": "Preprints\n\nAll papers should be uploaded to a relevant preprint archive prior to or upon submission, unless the target journal does not allow preprint publication.\nOur general policy is to avoid publishing in journals that do not allow preprint posting, unless there is a very strong reason to do so.",
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+    "text": "Responding to incidents\n\nLab members asked to stop any misconduct are expected to comply immediately. Justification for the request does not need to be provided, nor does the reporting party of the incident need to be identified.\nIf you are being harassed, notice that someone else is being harassed, or have any other concerns, please contact Dr. Poldrack as soon as possible. Anonymous comments may also be made to Dr. Poldrack using this form. If you are not comfortable contacting him directly, you may report your concerns to one of the relevant Stanford University offices that are prepared to respond to harassment complaints.\nWe expect lab members to follow this code of conduct at conferences and workshops and related social events, and whenever they are representing the lab in a professional context.\nWhen lab members are invited to participate in a professional event, they are expected to inquire regarding the steps that the organizers are taking to ensure diversity prior to accepting any invitation. This includes declining participation in exclusionary events such as panels or talks. For example, men in the lab should avoid participating in all-men panels whenever possible, keeping in mind that this may be more achievable for senior versus junior lab members.\n\nAdapted from https://en-us.confcodeofconduct.com/.",
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-    "text": "We affirm the scientific utility and importance of both exploratory and hypothesis-driven (confirmatory) research, but it is essential that they be clearly distinguished.\nAll research will be considered exploratory unless the hypotheses and analysis methods were pre-registered.\n\n\n\n\n\nFor datasets where it is feasible, the data should be visually examined for outliers or aberrant patterns (e.g. zero-inflation) using pair plots or other appropriate methods.\nAnalysis procedures should be tested on the first subject (for fMRI) or first few subjects (for behavioral studies) before collecting any additional data, to ensure that the data are appropriately recorded.\nFor MRI data being acquired by the lab, research coordinators should run MRIQC and view the reports within one week of acquisition.\n\n\n\n\n\nWhen possible, all analysis code should be tested on simulated data to ensure positive and negative control prior to any analysis of the real data.\nPositive controls should ensure that effects of interest are detected when present\n\nThese can also be extended to perform power analysis.\n\nNegative controls should ensure that no effects are detected when the null is true\nIn some cases, it is necessary to understand the nature of the data (e.g. distributions of variables) in order to develop appropriate analysis and simulation code. In these cases, the researcher will ask Dr. Poldrack or another lab member to generate a simulated dataset based on their actual data (e.g. by randomly shuffling the observations of each variable to create a knockoff dataset that maintains each variable’s marginal distribution), prior to any analyses.\n\n\n\n\n\nWhen possible, all data analyses should be replicated by an independent analyst who is blind to the results of the initial analysis.\nIf discordant results are observed, then the analysts will work together to determine their source, and whether they reflect error versus true analytic variability.\n\n\n\n\n\nAll analysis procedures should be implemented in code and runnable with a single command.\nWe aim to avoid any analyses that involve manual intervention. If such analyses are necessary (e.g. for identifying anatomical brain regions), the specific protocol should be described, and if possible the manual operation should be recorded using screen capture.\nThe entire software environment should be at best reproducible, or at minimum recordable.\n\nThe best practice is to implement all analyses within a Docker image that can be shared with the code.\nIf possible, the versions of all software libraries should be pinned.\nAt minimum, the entire software environment (including library versions) should be recorded and included with the shared results.",
+    "text": "The fundamental mission of our lab is to understand how human brain computations give rise to decisions and actions, with a particular focus on how humans exert control over their behavior. We use a broad set of methods, including neuroimaging, behavior, and computation. We are committed to doing our work in as transparent and reproducible way as possible, and in building tools and resources to help other researchers achieve these aims as well. We aim to sustain a laboratory community in which everyone feels welcomed, respected, and intellectually stimulated.",
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-    "text": "We affirm the scientific utility and importance of both exploratory and hypothesis-driven (confirmatory) research, but it is essential that they be clearly distinguished.\nAll research will be considered exploratory unless the hypotheses and analysis methods were pre-registered.",
+    "text": "The lab’s policy follows the IJCME recommendations on Defining the Role of Authors and Contributors, which state that authorship should be based on four criteria:\n\nSubstantial contributions to the conception or design of the work; or the acquisition, analysis, or interpretation of data for the work; AND\nDrafting the work or revising it critically for important intellectual content; AND\nFinal approval of the version to be published; AND\nAgreement to be accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved.\n\nImportantly, we view substantial contributions to data acquisition or analysis alone to be sufficient for authorship on the primary project manuscript, as long criteria 2-4 are met. For this reason, research assistants in our lab often end up being coauthors on our publications.\nCriterion #1 also implies that Dr. Poldrack will not accept authorship on any work that he has not played a substantial role in either designing, analyzing, or interpreting. Please do not send completed manuscripts with a request for him to be a coauthor.\nThe sharing of data is not considered to be sufficient on its own to warrant authorship; instead, credit should be given through citation of a data descriptor and/or dataset DOI. However, authorship is appropriate in cases where the dataset owner provides substantial input into the research, or when required by the data use agreement.",
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-    "text": "For datasets where it is feasible, the data should be visually examined for outliers or aberrant patterns (e.g. zero-inflation) using pair plots or other appropriate methods.\nAnalysis procedures should be tested on the first subject (for fMRI) or first few subjects (for behavioral studies) before collecting any additional data, to ensure that the data are appropriately recorded.\nFor MRI data being acquired by the lab, research coordinators should run MRIQC and view the reports within one week of acquisition.",
+    "text": "The lab’s policy follows the IJCME recommendations on Defining the Role of Authors and Contributors, which state that authorship should be based on four criteria:\n\nSubstantial contributions to the conception or design of the work; or the acquisition, analysis, or interpretation of data for the work; AND\nDrafting the work or revising it critically for important intellectual content; AND\nFinal approval of the version to be published; AND\nAgreement to be accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved.\n\nImportantly, we view substantial contributions to data acquisition or analysis alone to be sufficient for authorship on the primary project manuscript, as long criteria 2-4 are met. For this reason, research assistants in our lab often end up being coauthors on our publications.\nCriterion #1 also implies that Dr. Poldrack will not accept authorship on any work that he has not played a substantial role in either designing, analyzing, or interpreting. Please do not send completed manuscripts with a request for him to be a coauthor.\nThe sharing of data is not considered to be sufficient on its own to warrant authorship; instead, credit should be given through citation of a data descriptor and/or dataset DOI. However, authorship is appropriate in cases where the dataset owner provides substantial input into the research, or when required by the data use agreement.",
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-    "text": "When possible, all analysis code should be tested on simulated data to ensure positive and negative control prior to any analysis of the real data.\nPositive controls should ensure that effects of interest are detected when present\n\nThese can also be extended to perform power analysis.\n\nNegative controls should ensure that no effects are detected when the null is true\nIn some cases, it is necessary to understand the nature of the data (e.g. distributions of variables) in order to develop appropriate analysis and simulation code. In these cases, the researcher will ask Dr. Poldrack or another lab member to generate a simulated dataset based on their actual data (e.g. by randomly shuffling the observations of each variable to create a knockoff dataset that maintains each variable’s marginal distribution), prior to any analyses.",
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+    "text": "Affiliation\nThe listed affiliation for a publication should include any institutions where one was affiliated while completing the work.\n- Any work completed at Stanford should include the Stanford affiliation, even if the individual has left Stanford. - Work completed prior to joining Stanford but published after joining the lab does not need to include the Stanford affiliation, but it may be included (along with the institution where the work was completed) if work was done on the paper after joining the lab.",
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+    "text": "If we identify an error in a published paper from the lab, all authors should convene promptly to discuss what if any conclusions are affected by the error. Most journals have a mechanism for either publishing a correction to the article when the primary conclusions of the paper are not substantially affected, or retracting the article if they are. All authors should agree on whether a correction or retraction is warranted, and promptly notify the journal of their recommendation and the nature of the error. If applicable, a notification and corrected version of the article should also be submitted to the preprint server (e.g. bioRxiv), and internal copies of the paper should be corrected and versioned accordingly.",
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-    "text": "All analysis procedures should be implemented in code and runnable with a single command.\nWe aim to avoid any analyses that involve manual intervention. If such analyses are necessary (e.g. for identifying anatomical brain regions), the specific protocol should be described, and if possible the manual operation should be recorded using screen capture.\nThe entire software environment should be at best reproducible, or at minimum recordable.\n\nThe best practice is to implement all analyses within a Docker image that can be shared with the code.\nIf possible, the versions of all software libraries should be pinned.\nAt minimum, the entire software environment (including library versions) should be recorded and included with the shared results.",
+    "text": "Human subjects research\n\nAll lab members engaged in research must complete the relevant human subjects training through CITI. A detailed list of relevant training courses is provided to new members as part of the lab’s internal onboarding materials.\n\nIf unsure if you are doing human subjects research, you can use the NIH Decision Tool\nNo personal identifiers should ever be associated with data recorded in the laboratory. This includes the 18 identifiers specified by HIPAA, as well as any other identifiers that could potentially be used to re-identify an individual.\nAll brain imaging data should be defaced prior to analysis and sharing. Behavioural data should not contain personal identifiers (such as for example Amazon Turk ID for data collected online).\n\nDemographic data must be obtained for all subjects, in order to fulfill NIH inclusion reporting requirements and IRB documentation.\nRedcap should be used for recruitment and screening, as well as e-consents.\n\nIRB maintenance is done by the research coordinators or the person leading the project.\n\nAll projects considered a clinical trial should be posted on ClinicalTrials.gov\nFor more information on ethics regarding human subject research, you can watch Stanford’s MED 255 videos on Biomedical Ethics",
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-    "text": "All products of research at Stanford (including data and code) are the property of the University. However, faculty have wide latitude to release software as open source under the University’s open source policy, as long as it doesn’t conflict with any other obligations. Students are allowed to release code under an open source license at Stanford with faculty permission; students in the Poldracklab have blanket permission to do so, as all of our code is intended to be made open available, as discussed in the section on code sharing. After leaving the lab, trainees can continue to reuse any code or other research materials (e.g. stimuli) developed as part of their work in the lab as long as the code has been released under an open source license and they continue to abide by the terms of the license.\nAs discussed in the section on data management and sharing, all data collected within our laboratory is meant to be shared upon submission of the related paper. In cases where these data can be deidentified they will be shared under a public domain dedication (CC0), which places no restrictions on their use by other researchers. Thus, any researcher can continue to use those data once they leave the lab. In other cases it may be necessary to restrict data sharing (e.g. when the data cannot be deidentified), in which case researchers will need to obtain a data use agreement from Stanford in order to access those data at their new institution. Dr. Poldrack commits to supporting any such requests, unless they violate other obligations of his or the University.\nIn many cases we use data within the lab under Data Use Agreements (such as the ABCD or HCP datasets), and any researcher wishing to use such datasets must be explicitly listed on the DUA. Once a researcher is no longer included in the Stanford DUA for a particular dataset, they must no longer access the dataset via Stanford computer systems.\n\n\nWhen a trainee leaves the lab, there is often uncertainty about which ideas are theirs to pursue independently and which must be pursued in collaboration with their former mentor. It is difficult to specify a blanket policy on this issue, as it will depend on many different circumstances. Trainees are encouraged to discuss this issue openly with Dr. Poldrack prior to departing the lab, to prevent any misunderstandings. In many cases Dr. Poldrack will be happy for the trainee to take the ideas and pursue them independently in their new position; this has happened on a number of occasions. In other cases, particularly when the ideas were developed in close collaboration with Dr. Poldrack, there may be an expectation that further development of the ideas will occur through collaborative efforts.",
+    "text": "Documenting research activities\n\nDetailed procedures should be documented throughout any ongoing research activities, including subject recruitment procedures, subject running procedures, analysis plans, and readme’s for any code base. Documentation should be sufficient to allow a new researcher or research coordinator to be able to understand any ongoing research procedures with minimal (ideally no) additional guidance from other research staff.\nThis documentation should be ready to be made available to Dr. Poldrack or other lab members at any time, preferably via an online platform such as Google Docs.",
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-    "text": "When a trainee leaves the lab, there is often uncertainty about which ideas are theirs to pursue independently and which must be pursued in collaboration with their former mentor. It is difficult to specify a blanket policy on this issue, as it will depend on many different circumstances. Trainees are encouraged to discuss this issue openly with Dr. Poldrack prior to departing the lab, to prevent any misunderstandings. In many cases Dr. Poldrack will be happy for the trainee to take the ideas and pursue them independently in their new position; this has happened on a number of occasions. In other cases, particularly when the ideas were developed in close collaboration with Dr. Poldrack, there may be an expectation that further development of the ideas will occur through collaborative efforts.",
+    "text": "Do not hesitate to ask Jeanette Mumford for help with any statistical analyses.\n\n\n\n\n\nMethods for multiple testing correction should be chosen prior to data analysis and reported in the preregistration document.\nThe nature of grouping for multiple testing corrections (e.g., parameter within single models, sets of models, etc) should be pre-specified.\nFor fMRI data, if using cluster-based thresholding the cluster forming threshold must be Z ≥ 3.1 if using parametric thresholding. There are no restrictions on threshold when using nonparametric thresholding, but the threshold should be pre-specified.\n\n\n\n\n\nProper cross-validation practices should be considered. Refer to https://pubmed.ncbi.nlm.nih.gov/31774490/ for more detail.\n\nIn-sample model fit indices should not be reported as evidence for predictive accuracy\nThe cross-validation procedure should encompass all operations applied to the data\nPrediction analyses should not be performed with samples smaller than several hundred observations\nMultiple measures of prediction accuracy should be examined and reported\nThe coefficient of determination should be computed using the sums of squares formulation and not the squared correlation coefficient\nLeave-one-out cross-validation should be avoided in favor of shuffle-split or K-fold cross-validation.\n\n\n\n\n\n\nMixed effects models should include all possible random effects, subject to the constraint of adequate model convergence.\nConvergence should be checked for all models, and models should be checked for highly influential observations.\nSimplification or random effects structure can be done if the p-value &gt; 0.2 (https://www.google.com/url?q=https://www.sciencedirect.com/science/article/pii/S0749596X17300013&sa=D&source=editors&ust=1623857125982000&usg=AOvVaw2E_twuab7e56Nn_i1yTdmn) assuming convergence.\n\n\n\n\n\nDoes the model properly test the hypothesis of interest?\nDo the data conform to the assumptions of the model?\n\nAll model fits should be criticized to identify violation of any assumptions or presence of outliers.\n\n\n\n\n\nEffect size, parameter estimate, standard error, p-value and confidence interval should all be reported.\nIn cases where null effects are reported, some measure of evidence for the null hypothesis (e.g. Bayes factors, equivalence tests) should be reported.\nResults for all analyses that were preregistered should be reported.",
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-    "text": "All code should be managed using a version control system, preferably git.\n\nThere are many resources online for learning git. A good starting point is Git for beginners: The definitive practical guide.\nGit questions can be addressed to the #git channel on the Poldracklab Slack.\n\nCode should be regularly pushed to a remote server, preferably Github.\n\nOur default is that all repositories for research projects will be public, unless there is a strong reason to keep it private.\n\nAny substantive code copied or adapted from another source (e.g. stackoverflow) should be attributed to the source (including the URL of the source).\nCare must be taken to avoid sharing identifiable data, private passwords, AWS credentials, and other confidential information when using Github.\n\nAny private information should be stored in a separate text file that is read in by the code, and those files should be added to the .gitignore file so that they will not be checked in.\nAny accidental breach should be dealt with and reported to Dr. Poldrack and other relevant parties immediately.\n\n\n\n\n\n\nAll coding projects should be reviewed prior to paper submission.\n\n\n\n\n\nAll code should be made available via Github, upon submission of the preprint at the latest.\nAll shared code should be accompanied by an open source license.\n\nOur general preference is for permissive licenses such as MIT or Apache, but other licenses may be used (e.g. in collaborative projects that use GPL-style licenses).\nIf code is used from other projects, the licensing requirements for that code should be obeyed.\n\nA Github release should be generated for code related to any paper submission, containing the exact code used to implement all of the included analyses for the submitted version.\n\nThe Github repository should be linked to Zenodo in order to generate a DOI for each release, and this DOI should be included in the manuscript (rather than the Github link).",
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-    "text": "All code should be managed using a version control system, preferably git.\n\nThere are many resources online for learning git. A good starting point is Git for beginners: The definitive practical guide.\nGit questions can be addressed to the #git channel on the Poldracklab Slack.\n\nCode should be regularly pushed to a remote server, preferably Github.\n\nOur default is that all repositories for research projects will be public, unless there is a strong reason to keep it private.\n\nAny substantive code copied or adapted from another source (e.g. stackoverflow) should be attributed to the source (including the URL of the source).\nCare must be taken to avoid sharing identifiable data, private passwords, AWS credentials, and other confidential information when using Github.\n\nAny private information should be stored in a separate text file that is read in by the code, and those files should be added to the .gitignore file so that they will not be checked in.\nAny accidental breach should be dealt with and reported to Dr. Poldrack and other relevant parties immediately.",
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-    "text": "All code should be made available via Github, upon submission of the preprint at the latest.\nAll shared code should be accompanied by an open source license.\n\nOur general preference is for permissive licenses such as MIT or Apache, but other licenses may be used (e.g. in collaborative projects that use GPL-style licenses).\nIf code is used from other projects, the licensing requirements for that code should be obeyed.\n\nA Github release should be generated for code related to any paper submission, containing the exact code used to implement all of the included analyses for the submitted version.\n\nThe Github repository should be linked to Zenodo in order to generate a DOI for each release, and this DOI should be included in the manuscript (rather than the Github link).",
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-    "text": "Pre-registration is a mechanism in which one places a detailed description of a planned study into a repository where it is timestamped and will remain immutable.\nFor more background information, see here.\n\nAll empirical projects will be pre-registered, preferably using the Open Science Framework.\n\nPilot studies need not be pre-registered, but should then be subject to a pre-registered replication or extension.\n\nPre-registration should include as much detail as possible. Pre-registration must include at minimum:\n\nSample size (with justification)\nInclusion/exclusion criteria\nCriteria and procedures for outlier exclusion and data transformation\nPrimary hypotheses or outcomes to be tested (or an explicit statement that the study is simply exploratory)\n\nIn cases where you can’t say exactly how you will do something (usually because the choices are data-dependent), outline your procedures for determining how to do the thing, and in particular what aspects of the data will go into making that decision.\n\nIn some cases, multi-stage pre-registration may be appropriate\n\nE.g. when an initial discovery sample is used to determine hypotheses for subsequent testing in a validation sample\nIn this case, the initial pre-registration should lay out the sampling plan and procedures for data splitting, as well as the plan for followup pre-registrations.\n\nFor fMRI studies, pre-registration should specify:\n\nAny anatomical regions of interest to be used (with a specific definition and/or image mask for the region)\nMotion modeling strategies (including trial- or subject-level exclusion criteria)\nConfound modeling strategies at the trial-, subject- and group-level (including the specific design of response time modeling strategies)\n\nDeviations from pre-registration\n\nPre-registration should not be viewed as handcuffs. If a detail of the pre-registration is clearly suboptimal, then the rationale for using a more appropriate method should be noted, and the optimal method should be used.\nPublications should include an explicit “Deviations from pre-registration” section that outlines any deviations and their rationale.\n\n\n\n\nWhenever possible, we support the submission of Registered Reports.\nRegistered reports are a publication mechanism in which one submits a manuscript that contains an Introduction and Methods section that describe a study prior to execution of the research; it is essential a written version of a pre-registration.\nThe manuscript is reviewed on the strength of the rationale and methods, and if deemed sufficient it is given an “in-principle acceptance” such that the journal guarantees to publish the paper regardless of the results, as long as the approved methods were followed.\nThere are currently over 300 journals that accept Registered Report submissions.\nIn addition, Registered Reports can be submitted to PCI-RR, which is a community project that reviews preprint Registered Reports.",
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-    "text": "Pre-registration is a mechanism in which one places a detailed description of a planned study into a repository where it is timestamped and will remain immutable.\nFor more background information, see here.\n\nAll empirical projects will be pre-registered, preferably using the Open Science Framework.\n\nPilot studies need not be pre-registered, but should then be subject to a pre-registered replication or extension.\n\nPre-registration should include as much detail as possible. Pre-registration must include at minimum:\n\nSample size (with justification)\nInclusion/exclusion criteria\nCriteria and procedures for outlier exclusion and data transformation\nPrimary hypotheses or outcomes to be tested (or an explicit statement that the study is simply exploratory)\n\nIn cases where you can’t say exactly how you will do something (usually because the choices are data-dependent), outline your procedures for determining how to do the thing, and in particular what aspects of the data will go into making that decision.\n\nIn some cases, multi-stage pre-registration may be appropriate\n\nE.g. when an initial discovery sample is used to determine hypotheses for subsequent testing in a validation sample\nIn this case, the initial pre-registration should lay out the sampling plan and procedures for data splitting, as well as the plan for followup pre-registrations.\n\nFor fMRI studies, pre-registration should specify:\n\nAny anatomical regions of interest to be used (with a specific definition and/or image mask for the region)\nMotion modeling strategies (including trial- or subject-level exclusion criteria)\nConfound modeling strategies at the trial-, subject- and group-level (including the specific design of response time modeling strategies)\n\nDeviations from pre-registration\n\nPre-registration should not be viewed as handcuffs. If a detail of the pre-registration is clearly suboptimal, then the rationale for using a more appropriate method should be noted, and the optimal method should be used.\nPublications should include an explicit “Deviations from pre-registration” section that outlines any deviations and their rationale.\n\n\n\n\nWhenever possible, we support the submission of Registered Reports.\nRegistered reports are a publication mechanism in which one submits a manuscript that contains an Introduction and Methods section that describe a study prior to execution of the research; it is essential a written version of a pre-registration.\nThe manuscript is reviewed on the strength of the rationale and methods, and if deemed sufficient it is given an “in-principle acceptance” such that the journal guarantees to publish the paper regardless of the results, as long as the approved methods were followed.\nThere are currently over 300 journals that accept Registered Report submissions.\nIn addition, Registered Reports can be submitted to PCI-RR, which is a community project that reviews preprint Registered Reports.",
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-    "text": "Our lab endeavors to make all of our research code openly available. None of this code is guaranteed to work outside of our local environment, and most of it is not built for portability, but if you use it and find any bugs, please let us know. Unless otherwise noted, all code is released under the unrestrictive MIT License\nFor additional information on our organized software development projects, see Informatics projects.",
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-    "text": "Github repositories\nThe Poldrack lab manages several GitHub organizations:\n\nPoldrack Lab at Stanford\nOpenNeuro.org\nThe Experiment Factory\nThe Cognitive Atlas\n\nWe are currently or have been heavily involved in the following organizations:\n\nBrain Imaging Data Structure\nNeuroVault\nNiPreps\nTemplateFlow\n\nWe also contribute to greater and lesser extents to many other projects, including:\n\nThe Nipy community\nNipype\nNilearn\n\nFor individual members’ GitHub profiles, see Lab members.",
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+    "text": "All research-related materials (including data and code) should be stored on a volume that is automatically backed up to a cloud storage server, such as Google Drive (which provides free storage via your Stanford login).\n\nStanford also provides access to Crashplan backups for faculty and staff which automatically backs up laptops and computers.\n\n\nNeuroimaging datasets should be backed up on TACC Corral.\n\nEvery dataset should be organized with the goal that another researcher could take the dataset and immediately understand its content without the need to ask questions of the dataset owner.\nAll imaging data should be organized using the BIDS format.\nFor non-imaging data, files and folders should be named and organized using the Psych-DS format when possible.\nVariable names should be as expressive as possible, with automated parsing in mind. The structure of variable names should follow the key-value schema used in BIDS (with key and value separated by a dash, and key-value pairs separated by underscores). All embedded numbers should be zero-padded.\n\nExamples:\nfor item 5 on the Barratt Impulsiveness Scale, the variable name might be “survey-BIS_item-005”\n\nAll datasets should be accompanied by a data dictionary that specifies the meaning of each variable.\n\nThis should preferably be stored as a JSON file, with variable names as dictionary keys to support automated parsing.\n\n\n\n\n\n\nAll data generated within our lab will be shared upon publication at the latest, and preferably upon preprint submission.\nIn some cases, we may work with datasets that we are not able to share in full, due to data use agreements or legal restrictions. In this case, we will push to share at least the processed data necessary to run the primary statistical analyses.\nData will be shared through platforms that allow snapshotting and generation of a DOI:\n\nOpenNeuro for neuroimaging data\nFor behavioral data, repositories include Zenodo (preferred), OSF, Stanford Digital Repository, or Dryad.\nLarge data files should not be committed to Github repositories. Small data files may be hosted on github, but it should not be the primary sharing platform.\n\n\nA snapshot should be shared that matches exactly the analyses in the publication, and which can be analyzed directly using the shared analysis code.\nAll data will be shared with an explicit data use agreement (aka “license”)\n\nWe prefer the minimally restrictive license possible, preferably CC0\n\nAll data should be shared with an explicit description of how they should be cited.\nWhen using shared data, lab members should ensure that they properly cite the data source in any publications using the language recommended by the data owner.",
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-    "text": "Task software used in Consortium for Neuropsychiatric Phenomics (CNP)\n\n​Users of these tasks should include the following acknowledgment in any resulting publications: Development of this software was supported by the Consortium for Neuropsychiatric Phenomics (NIH Roadmap for Medical Research grants UL1-DE019580, RL1MH083269, RL1DA024853, PL1MH083271.\nBalloon Analog Risk task (demo and scanning script)\nBreath holding task\nPaired Associate Memory\nSpatial working memory capacity\nStop Signal task\nTask switching",
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-    "text": "Data/code/OSF pages for published papers\n\n\n2024\nMumford JA, Bissett PG, Jones HM, Shim S, Rios JAH, Poldrack RA (2024). The response time paradox in functional magnetic resonance imaging analyses. Nature Human Behaviour, 8, 349-360. DOI Data Code\n\n\n2023\nBissett PG, Jones HM, Hagen MP, Bui TT, Li JK, Rios JAH, Mumford JA, Shine JM, Poldrack RA (2023). A dual-task approach to inform the taxonomy of inhibition-related processes. Journal of Experimental Psychology: Human Perception and Performance, 49, 277-289. OA DOI Data Code OSF\nJaffe PI, Poldrack RA, Schafer RJ, Bissett PG (2023). Modelling human behaviour in cognitive tasks with latent dynamical systems. Nature Human Behaviour, 7, 986-1000. DOI Data Code\nThomas AW, Ré C, Poldrack RA (2023). Benchmarking explanation methods for mental state decoding with deep learning models. NeuroImage, 273, 120109. OA DOI Code\n\n\n2021\nBeam E, Potts C, Poldrack RA, Etkin A (2021). A data-driven framework for mapping domains of human neurobiology. Nature Neuroscience, 24, 1733-1744. OA DOI Data Code\nBissett PG, Hagen MP, Jones HM, Poldrack RA (2021). Design issues and solutions for stop-signal data from the Adolescent Brain Cognitive Development (ABCD) study. eLife, 10. OA DOI Code\nBissett PG, Jones HM, Poldrack RA, Logan GD (2021). Severe violations of independence in response inhibition tasks. Science Advances, 7. OA DOI Data Code\nMazza GL, Smyth HL, Bissett PG et al. (2021). Correlation Database of 60 Cross-Disciplinary Surveys and Cognitive Tasks Assessing Self-Regulation. Journal of Personality Assessment, 103, 238-245. OA DOI Data\n\n\n2020\nBielczyk NZ, Ando A, Badhwar A et al. (2020). Effective Self-Management for Early Career Researchers in the Natural and Life Sciences. Neuron, 106, 212-217. OA DOI OSF\nLurie DJ, Kessler D, Bassett DS et al. (2020). Questions and controversies in the study of time-varying functional connectivity in resting fMRI. Network Neuroscience, 4, 30-69. DOI OSF\n\n\n2019\nAridan N, Malecek NJ, Poldrack RA, Schonberg T (2019). Neural correlates of effort-based valuation with prospective choices. NeuroImage, 185, 446-454. OA DOI Data\nBotvinik-Nezer R, Iwanir R, Holzmeister F, Huber J, Johannesson M, Kirchler M, Dreber A, Camerer CF, Poldrack RA, Schonberg T (2019). fMRI data of mixed gambles from the Neuroimaging Analysis Replication and Prediction Study. Scientific Data, 6. OA DOI Data\nEisenberg IW, Bissett PG, Zeynep Enkavi A, Li J, MacKinnon DP, Marsch LA, Poldrack RA (2019). Uncovering the structure of self-regulation through data-driven ontology discovery. Nature Communications, 10. OA DOI Data Code OSF\nEnkavi AZ, Eisenberg IW, Bissett PG, Mazza GL, MacKinnon DP, Marsch LA, Poldrack RA (2019). Large-scale analysis of test–retest reliabilities of self-regulation measures. Proceedings of the National Academy of Sciences, 116, 5472-5477. OA DOI Data OSF\nKing M, Hernandez-Castillo CR, Poldrack RA, Ivry RB, Diedrichsen J (2019). Functional boundaries in the human cerebellum revealed by a multi-domain task battery. Nature Neuroscience, 22, 1371-1378. OA DOI Data\n\n\n2018\nBakkour A, Botvinik-Nezer R, Cohen N, Hover AM, Poldrack RA, Schonberg T (2018). Spacing of cue-approach training leads to better maintenance of behavioral change. PLOS ONE, 13, e0201580. OA DOI OSF\nEisenberg IW, Bissett PG, Canning JR et al. (2018). Applying novel technologies and methods to inform the ontology of self-regulation. Behaviour Research and Therapy, 101, 46-57. OA DOI OSF\nLam M, Trampush JW, Yu J et al. (2018). Multi-Trait Analysis of GWAS and Biological Insights Into Cognition: A Response to Hill (2018). Twin Research and Human Genetics, 21, 394-397. DOI OSF\nPoldrack RA, Monahan J, Imrey PB, Reyna V, Raichle ME, Faigman D, Buckholtz JW (2018). Predicting Violent Behavior: What Can Neuroscience Add?. Trends in Cognitive Sciences, 22, 111-123. OA DOI OSF\nWimmer GE, Li JK, Gorgolewski KJ, Poldrack RA (2018). Reward Learning over Weeks Versus Minutes Increases the Neural Representation of Value in the Human Brain. The Journal of Neuroscience, 38, 7649-7666. OA DOI OSF\n\n\n2017\nEsteban O, Birman D, Schaer M, Koyejo OO, Poldrack RA, Gorgolewski KJ (2017). MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites. PLOS ONE, 12, e0184661. OA DOI OSF\nPoldrack RA, Baker CI, Durnez J, Gorgolewski KJ, Matthews PM, Munafò MR, Nichols TE, Poline J, Vul E, Yarkoni T (2017). Scanning the horizon: towards transparent and reproducible neuroimaging research. Nature Reviews Neuroscience, 18, 115-126. OA DOI OSF\n\n\n2016\nPoldrack R, Congdon E, Triplett W et al. (2016). A phenome-wide examination of neural and cognitive function. Scientific Data, 3. OA DOI Data\n\n\n2015\nLaumann T, Gordon E, Adeyemo B et al. (2015). Functional System and Areal Organization of a Highly Sampled Individual Human Brain. Neuron, 87, 657-670. OA DOI Data\nPoldrack RA (2015). Is “efficiency” a useful concept in cognitive neuroscience?. Developmental Cognitive Neuroscience, 11, 12-17. OA DOI Code\nPoldrack RA, Laumann TO, Koyejo O et al. (2015). Long-term neural and physiological phenotyping of a single human. Nature Communications, 6. OA DOI Data Code\n\n\n2014\nDavis T, LaRocque KF, Mumford JA, Norman KA, Wagner AD, Poldrack RA (2014). What do differences between multi-voxel and univariate analysis mean? How subject-, voxel-, and trial-level variance impact fMRI analysis. NeuroImage, 97, 271-283. OA DOI Code\nHelfinstein SM, Schonberg T, Congdon E, Karlsgodt KH, Mumford JA, Sabb FW, Cannon TD, London ED, Bilder RM, Poldrack RA (2014). Predicting risky choices from brain activity patterns. Proceedings of the National Academy of Sciences, 111, 2470-2475. OA DOI Data\nWhite CN, Congdon E, Mumford JA, Karlsgodt KH, Sabb FW, Freimer NB, London ED, Cannon TD, Bilder RM, Poldrack RA (2014). Decomposing Decision Components in the Stop-signal Task: A Model-based Approach to Individual Differences in Inhibitory Control. Journal of Cognitive Neuroscience, 26, 1601-1614. OA DOI Data\nWhite CN, Poldrack RA (2014). Decomposing bias in different types of simple decisions. Journal of Experimental Psychology: Learning, Memory, and Cognition, 40, 385-398. DOI Data Code\n\n\n2012\nPoldrack RA, Mumford JA, Schonberg T, Kalar D, Barman B, Yarkoni T (2012). Discovering Relations Between Mind, Brain, and Mental Disorders Using Topic Mapping. PLoS Computational Biology, 8, e1002707. OA DOI Code\nSchonberg T, Fox CR, Mumford JA, Congdon E, Trepel C, Poldrack RA (2012). Decreasing Ventromedial Prefrontal Cortex Activity During Sequential Risk-Taking: An fMRI Investigation of the Balloon Analog Risk Task. Frontiers in Neuroscience, 6. DOI Data\n\n\n2008\nXue G, Aron AR, Poldrack RA (2008). Common Neural Substrates for Inhibition of Spoken and Manual Responses. Cerebral Cortex, 18, 1923-1932. DOI Data\n\n\n2007\nTom SM, Fox CR, Trepel C, Poldrack RA (2007). The Neural Basis of Loss Aversion in Decision-Making Under Risk. Science, 315, 515-518. DOI Data\n\n\n2006\nAron AR, Gluck MA, Poldrack RA (2006). Long-term test–retest reliability of functional MRI in a classification learning task. NeuroImage, 29, 1000-1006. OA DOI Data\nFoerde K, Knowlton BJ, Poldrack RA (2006). Modulation of competing memory systems by distraction. Proceedings of the National Academy of Sciences, 103, 11778-11783. OA DOI Data\n\n\n2001\nPoldrack RA, Clark J, Paré-Blagoev EJ, Shohamy D, Creso Moyano J, Myers C, Gluck MA (2001). Interactive memory systems in the human brain. Nature, 414, 546-550. DOI Data",
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+    "text": "All data generated within our lab will be shared upon publication at the latest, and preferably upon preprint submission.\nIn some cases, we may work with datasets that we are not able to share in full, due to data use agreements or legal restrictions. In this case, we will push to share at least the processed data necessary to run the primary statistical analyses.\nData will be shared through platforms that allow snapshotting and generation of a DOI:\n\nOpenNeuro for neuroimaging data\nFor behavioral data, repositories include Zenodo (preferred), OSF, Stanford Digital Repository, or Dryad.\nLarge data files should not be committed to Github repositories. Small data files may be hosted on github, but it should not be the primary sharing platform.\n\n\nA snapshot should be shared that matches exactly the analyses in the publication, and which can be analyzed directly using the shared analysis code.\nAll data will be shared with an explicit data use agreement (aka “license”)\n\nWe prefer the minimally restrictive license possible, preferably CC0\n\nAll data should be shared with an explicit description of how they should be cited.\nWhen using shared data, lab members should ensure that they properly cite the data source in any publications using the language recommended by the data owner.",
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-    "text": "2025\nQuah SKL, Jo B, Geniesse C, Uddin LQ, Mumford JA, Barch DM, Fair DA, Gotlib IH, Poldrack RA, Saggar M (2025). A data-driven latent variable approach to validating the research domain criteria framework. Nat Commun, 16, 830. OA DOI\n\n\n2024\nBissett PG, Eisenberg IW, Shim S et al. (2024). Cognitive tasks, anatomical MRI, and functional MRI data evaluating the construct of self-regulation. Scientific Data, 11. OA DOI\nBrumback AC, Ngiam WXQ, Lapato DM et al. (2024). Catalyzing communities of research rigour champions. Brain Communications, 6. DOI\nCiric R, Xu A, Poldrack RA (2024). hyve, a compositional visualisation engine for brain imaging data. bioRxiv. OA DOI\nDean DC, Tisdall MD, Wisnowski JL et al. (2024). Quantifying brain development in the HEALthy Brain and Child Development (HBCD) Study: The magnetic resonance imaging and spectroscopy protocol. Dev Cogn Neurosci, 70, 101452. OA DOI\nDemidenko MI, Mumford JA, Poldrack RA (2024). Impact of analytic decisions on test-retest reliability of individual and group estimates in functional magnetic resonance imaging: a multiverse analysis using the monetary incentive delay task. bioRxiv. OA DOI\nDemidenko MI, Mumford JA, Ram N, Poldrack RA (2024). A multi-sample evaluation of the measurement structure and function of the modified monetary incentive delay task in adolescents. Developmental Cognitive Neuroscience, 65, 101337. OA DOI\nEkhtiari H, Zare-Bidoky M, Sangchooli A et al. (2024). Reporting checklists in neuroimaging: promoting transparency, replicability, and reproducibility. Neuropsychopharmacology, 50, 67-84. OA DOI\nHagen MP, Provins C, MacNicol E et al. (2024). Quality assessment and control of unprocessed anatomical, functional, and diffusion MRI of the human brain using MRIQC. bioRxiv. OA DOI\nHayashi S, Caron BA, Heinsfeld AS et al. (2024). brainlife.io: a decentralized and open-source cloud platform to support neuroscience research. Nature Methods, 21, 809-813. OA DOI\nHuckins G, Poldrack RA (2024). Generative dynamical models for classification of rsfMRI data. Netw Neurosci, 8, 1613-1633. OA DOI\nKapoor S, Cantrell EM, Peng K et al. (2024). REFORMS: Consensus-based Recommendations for Machine-learning-based Science. Science Advances, 10. OA DOI\nKovacs M, Varga MA, Dianovics D, Poldrack RA, Aczel B (2024). Opening the black box of article retractions: exploring the causes and consequences of data management errors. R Soc Open Sci, 11, 240844. OA DOI\nLi X, Bianchini Esper N, Ai L et al. (2024). Moving beyond processing- and analysis-related variation in resting-state functional brain imaging. Nature Human Behaviour, 8, 2003-2017. DOI\nMadsen SJ, Uddin LQ, Mumford JA, Barch DM, Fair DA, Gotlib IH, Poldrack RA, Kuceyeski A, Saggar M (2024). Predicting Task Activation Maps from Resting-State Functional Connectivity using Deep Learning. bioRxiv. OA DOI\nMumford JA, Bissett PG, Jones HM, Shim S, Rios JAH, Poldrack RA (2024). The response time paradox in functional magnetic resonance imaging analyses. Nature Human Behaviour, 8, 349-360. DOI Data Code\nPoldrack RA, Markiewicz CJ, Appelhoff S et al. (2024). The past, present, and future of the brain imaging data structure (BIDS). Imaging Neurosci (Camb), 2, 1-19. OA DOI\nPoldrack RA, Markiewicz CJ, Appelhoff S et al. (2024). The Past, Present, and Future of the Brain Imaging Data Structure (BIDS). ArXiv. OA\nQuah SKL, Jo B, Geniesse C, Uddin LQ, Mumford JA, Barch DM, Fair DA, Gotlib IH, Poldrack RA, Saggar M (2024). A Data-Driven Latent Variable Approach to Validating the Research Domain Criteria Framework. bioRxiv. OA DOI\nWannan CMJ, Nelson B, Addington J et al. (2024). Accelerating Medicines Partnership® Schizophrenia (AMP® SCZ): Rationale and Study Design of the Largest Global Prospective Cohort Study of Clinical High Risk for Psychosis. Schizophrenia Bulletin, 50, 496-512. OA DOI\n\n\n2023\nBirk JL, Otto MW, Cornelius T, Poldrack RA, Edmondson D (2023). Improving the Rigor of Mechanistic Behavioral Science: The Introduction of the Checklist for Investigating Mechanisms in Behavior-Change Research (CLIMBR). Behavior Therapy, 54, 708-713. OA DOI\nBissett PG, Eisenberg IW, Shim S et al. (2023). Cognitive tasks, anatomical MRI, and functional MRI data evaluating the construct of self-regulation. bioRxiv. OA DOI\nBissett PG, Jones HM, Hagen MP, Bui TT, Li JK, Rios JAH, Mumford JA, Shine JM, Poldrack RA (2023). A dual-task approach to inform the taxonomy of inhibition-related processes. Journal of Experimental Psychology: Human Perception and Performance, 49, 277-289. OA DOI Data Code OSF\nFinn ES, Poldrack RA, Shine JM (2023). Functional neuroimaging as a catalyst for integrated neuroscience. Nature, 623, 263-273. DOI\nGanz M, Poldrack RA (2023). Data sharing in neuroimaging: experiences from the BIDS project. Nature Reviews Neuroscience, 24, 729-730. DOI\nJaffe PI, Poldrack RA, Schafer RJ, Bissett PG (2023). Modelling human behaviour in cognitive tasks with latent dynamical systems. Nature Human Behaviour, 7, 986-1000. DOI Data Code\nKiar G, Clucas J, Feczko E et al. (2023). Align with the NMIND consortium for better neuroimaging. Nature Human Behaviour, 7, 1027-1028. OA DOI\nPernet C, Svarer C, Blair R, Van Horn JD, Poldrack RA (2023). On the Long-term Archiving of Research Data. Neuroinformatics, 21, 243-246. DOI\nPoldrack RA (2023). Statistical Thinking: Analyzing Data in an Uncertain World. Princeton, NJ: Princeton University Press.\nSubash P, Gray A, Boswell M et al. (2023). A comparison of neuroelectrophysiology databases. Scientific Data, 10. OA DOI\nThomas AW, Ré C, Poldrack RA (2023). Benchmarking explanation methods for mental state decoding with deep learning models. NeuroImage, 273, 120109. OA DOI Code\nUddin LQ, Betzel RF, Cohen JR et al. (2023). Controversies and progress on standardization of large-scale brain network nomenclature. Network Neuroscience, 7, 864-905. DOI\n\n\n2022\nAdebimpe A, Bertolero M, Dolui S et al. (2022). ASLPrep: a platform for processing of arterial spin labeled MRI and quantification of regional brain perfusion. Nature Methods, 19, 683-686. OA DOI\nBissett PG, Poldrack RA (2022). Estimating the Time to Do Nothing: Toward Next-Generation Models of Response Inhibition. Current Directions in Psychological Science, 31, 556-563. DOI\nCiric R, Thompson WH, Lorenz R et al. (2022). TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models. Nature Methods, 19, 1568-1571. OA DOI\nCiric R, Thomas AW, Esteban O, Poldrack RA (2022). Differentiable programming for functional connectomics. Proceedings of the 2nd Machine Learning for Health symposium, PMLR , 193.0.\nDelorme A, Truong D, Youn C, Sivagnanam S, Stirm C, Yoshimoto K, Poldrack RA, Majumdar A, Makeig S (2022). NEMAR: an open access data, tools and compute resource operating on neuroelectromagnetic data. Database, 2022. OA DOI\nJwa AS, Poldrack RA (2022). The spectrum of data sharing policies in neuroimaging data repositories. Human Brain Mapping, 43, 2707-2721. OA DOI\nParet C, Unverhau N, Feingold F, Poldrack RA, Stirner M, Schmahl C, Sicorello M (2022). Survey on Open Science Practices in Functional Neuroimaging. NeuroImage, 257, 119306. DOI\nPoline J, Kennedy DN, Sommer FT et al. (2022). Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data. Neuroinformatics, 20, 507-512. OA DOI\nScherer EA, Metcalf SA, Whicker CL et al. (2022). Momentary Influences on Self-Regulation in Two Populations With Health Risk Behaviors: Adults Who Smoke and Adults Who Are Overweight and Have Binge-Eating Disorder. Frontiers in Digital Health, 4. DOI\nScholz C, Chan H, Poldrack RA, de Ridder DTD, Smidts A, van der Laan LN (2022). Can we have a second helping? A preregistered direct replication study on the neurobiological mechanisms underlying self‐control. Human Brain Mapping, 43, 4995-5016. OA DOI\nThomas AW, Ré C, Poldrack RA (2022). Interpreting mental state decoding with deep learning models. Trends in Cognitive Sciences, 26, 972-986. DOI\nThomas AW, Ré C, Poldrack RA (2022). Self-Supervised Learning of Brain Dynamics from Broad Neuroimaging Data. Advances in Neural Information Processing Systems 35 (NeurIPS 2022).\nVaghi MM, Hagen MP, Jones HM, Mumford JA, Bissett PG, Poldrack RA (2022). Relating psychiatric symptoms and self-regulation during the COVID-19 crisis. Translational Psychiatry, 12. OA DOI\nWalters J, King M, Bissett PG, Ivry RB, Diedrichsen J, Poldrack RA (2022). Predicting brain activation maps for arbitrary tasks with cognitive encoding models. NeuroImage, 263, 119610. OA DOI\nWimmer GE, Poldrack RA (2022). Reward learning and working memory: Effects of massed versus spaced training and post-learning delay period. Memory &amp; Cognition, 50, 312-324. OA DOI\nde la Vega A, Rocca R, Blair RW, Markiewicz CJ, Mentch J, Kent JD, Herholz P, Ghosh SS, Poldrack RA, Yarkoni T (2022). Neuroscout, a unified platform for generalizable and reproducible fMRI research. eLife, 11. OA DOI\n\n\n2021\nAczel B, Szaszi B, Nilsonne G et al. (2021). Consensus-based guidance for conducting and reporting multi-analyst studies. eLife, 10. OA DOI\nBeam E, Potts C, Poldrack RA, Etkin A (2021). A data-driven framework for mapping domains of human neurobiology. Nature Neuroscience, 24, 1733-1744. OA DOI Data Code\nBissett PG, Hagen MP, Jones HM, Poldrack RA (2021). Design issues and solutions for stop-signal data from the Adolescent Brain Cognitive Development (ABCD) study. eLife, 10. OA DOI Code\nBissett PG, Jones HM, Poldrack RA, Logan GD (2021). Severe violations of independence in response inhibition tasks. Science Advances, 7. OA DOI Data Code\nDelorme A, Truong D, Martinez-Cancino R, Pernet C, Sivagnanam S, Yoshimoto K, Poldrack R, Majumdar A, Makeig S (2021). Tools for Importing and Evaluating BIDS-EEG Formatted Data. 2021 10th International IEEE/EMBS Conference on Neural Engineering (NER), 210-213. DOI\nEnkavi AZ, Poldrack RA (2021). Implications of the Lacking Relationship Between Cognitive Task and Self-report Measures for Psychiatry. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, 6, 670-672. DOI\nFox AS, Holley D, Klink PC et al. (2021). Sharing voxelwise neuroimaging results from rhesus monkeys and other species with Neurovault. NeuroImage, 225, 117518. OA DOI\nKoenis MMG, Durnez J, Rodrigue AL et al. (2021). Associations of cannabis use disorder with cognition, brain structure, and brain function inAfrican Americans. Human Brain Mapping, 42, 1727-1741. OA DOI\nLam M, Chen C, Ge T et al. (2021). Identifying nootropic drug targets via large-scale cognitive GWAS and transcriptomics. Neuropsychopharmacology, 46, 1788-1801. OA DOI\nLevitis E, van Praag CDG, Gau R et al. (2021). Centering inclusivity in the design of online conferences—An OHBM–Open Science perspective. GigaScience, 10. OA DOI\nMacNicol E, Ciric R, Kim E, Censo DD, Cash D, Poldrack RA, Esteban O (2021). Atlas-Based Brain Extraction Is Robust Across RAT MRI Studies. 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 312-315. DOI\nManapat PD, Edwards MC, MacKinnon DP, Poldrack RA, Marsch LA (2021). A Psychometric Analysis of the Brief Self-Control Scale. Assessment, 28, 395-412. OA DOI\nMarkiewicz CJ, Gorgolewski KJ, Feingold F et al. (2021). The OpenNeuro resource for sharing of neuroscience data. eLife, 10. OA DOI\nMazza GL, Smyth HL, Bissett PG et al. (2021). Correlation Database of 60 Cross-Disciplinary Surveys and Cognitive Tasks Assessing Self-Regulation. Journal of Personality Assessment, 103, 238-245. OA DOI Data\nMcNeish D, Mackinnon DP, Marsch LA, Poldrack RA (2021). Measurement in Intensive Longitudinal Data. Structural Equation Modeling: A Multidisciplinary Journal, 28, 807-822. DOI\nPoldrack RA (2021). The physics of representation. Synthese, 199, 1307-1325. DOI\nPoldrack RA (2021). Diving into the deep end: a personal reflection on the MyConnectome study. Current Opinion in Behavioral Sciences, 40, 1-4. DOI\nPoldrack RA (2021). Hard To Break: Why Our Brains Make Habits Stick. Princeton, NJ: Princeton University Press.\nRodrigue AL, Mastrovito D, Esteban O et al. (2021). Searching for Imaging Biomarkers of Psychotic Dysconnectivity. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, 6, 1135-1144. OA DOI\nZmigrod L, Eisenberg IW, Bissett PG, Robbins TW, Poldrack RA (2021). The cognitive and perceptual correlates of ideological attitudes: a data-driven approach. Philosophical Transactions of the Royal Society B: Biological Sciences, 376, 20200424. OA DOI\n\n\n2020\nAron AR, Ivry RB, Jeffery KJ, Poldrack RA, Schmidt R, Summerfield C, Urai AE (2020). How Can Neuroscientists Respond to the Climate Emergency?. Neuron, 106, 17-20. DOI\nBassett DS, Cullen KE, Eickhoff SB et al. (2020). Reflections on the past two decades of neuroscience. Nature Reviews Neuroscience, 21, 524-534. DOI\nBielczyk NZ, Ando A, Badhwar A et al. (2020). Effective Self-Management for Early Career Researchers in the Natural and Life Sciences. Neuron, 106, 212-217. OA DOI OSF\nBotvinik-Nezer R, Holzmeister F, Camerer CF et al. (2020). Variability in the analysis of a single neuroimaging dataset by many teams. Nature, 582, 84-88. OA DOI\nColenbier N, Van de Steen F, Uddin LQ, Poldrack RA, Calhoun VD, Marinazzo D (2020). Disambiguating the role of blood flow and global signal with partial information decomposition. NeuroImage, 213, 116699. DOI\nDockès J, Poldrack RA, Primet R, Gözükan H, Yarkoni T, Suchanek F, Thirion B, Varoquaux G (2020). NeuroQuery, comprehensive meta-analysis of human brain mapping. eLife, 9. OA DOI\nEsteban O, Ciric R, Finc K et al. (2020). Analysis of task-based functional MRI data preprocessed with fMRIPrep. Nature Protocols, 15, 2186-2202. OA DOI\nEsteban O, Goncalves M, Markiewicz CJ, Ghosh SS, Poldrack RA (2020). Software Tool to Read, Represent, Manipulate, and Apply N-Dimensional Spatial Transforms. 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), 709-712. DOI\nLurie DJ, Kessler D, Bassett DS et al. (2020). Questions and controversies in the study of time-varying functional connectivity in resting fMRI. Network Neuroscience, 4, 30-69. DOI OSF\nMollon J, Mathias SR, Knowles EEM et al. (2020). Cognitive impairment from early to middle adulthood in patients with affective and nonaffective psychotic disorders. Psychological Medicine, 50, 48-57. OA DOI\nPoldrack RA, Huckins G, Varoquaux G (2020). Establishment of Best Practices for Evidence for Prediction. JAMA Psychiatry, 77, 534. OA DOI\nPoldrack RA, Whitaker K, Kennedy D (2020). Introduction to the special issue on reproducibility in neuroimaging. NeuroImage, 218, 116357. DOI\nThompson WH, Kastrati G, Finc K, Wright J, Shine JM, Poldrack RA (2020). Time‐varying nodal measures with temporal community structure: A cautionary note to avoid misinterpretation. Human Brain Mapping, 41, 2347-2356. OA DOI\nThompson WH, Nair R, Oya H, Esteban O, Shine JM, Petkov CI, Poldrack RA, Howard M, Adolphs R (2020). A data resource from concurrent intracranial stimulation and functional MRI of the human brain. Scientific Data, 7. OA DOI\nThompson WH, Wright J, Bissett PG, Poldrack RA (2020). Dataset decay and the problem of sequential analyses on open datasets. eLife, 9. OA DOI\nTozzi L, Staveland B, Holt-Gosselin B et al. (2020). The human connectome project for disordered emotional states: Protocol and rationale for a research domain criteria study of brain connectivity in young adult anxiety and depression. NeuroImage, 214, 116715. OA DOI\n\n\n2019\nAridan N, Malecek NJ, Poldrack RA, Schonberg T (2019). Neural correlates of effort-based valuation with prospective choices. NeuroImage, 185, 446-454. OA DOI Data\nBotvinik-Nezer R, Iwanir R, Holzmeister F, Huber J, Johannesson M, Kirchler M, Dreber A, Camerer CF, Poldrack RA, Schonberg T (2019). fMRI data of mixed gambles from the Neuroimaging Analysis Replication and Prediction Study. Scientific Data, 6. OA DOI Data\nEisenberg IW, Bissett PG, Zeynep Enkavi A, Li J, MacKinnon DP, Marsch LA, Poldrack RA (2019). Uncovering the structure of self-regulation through data-driven ontology discovery. Nature Communications, 10. OA DOI Data Code OSF\nEnkavi AZ, Eisenberg IW, Bissett PG, Mazza GL, MacKinnon DP, Marsch LA, Poldrack RA (2019). Reply to Friedman and Banich: Right measures for the research question. Proceedings of the National Academy of Sciences, 116, 24398-24399. OA DOI\nEnkavi AZ, Eisenberg IW, Bissett PG, Mazza GL, MacKinnon DP, Marsch LA, Poldrack RA (2019). Large-scale analysis of test–retest reliabilities of self-regulation measures. Proceedings of the National Academy of Sciences, 116, 5472-5477. OA DOI Data OSF\nEsteban O, Blair RW, Nielson DM, Varada JC, Marrett S, Thomas AG, Poldrack RA, Gorgolewski KJ (2019). Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines. Scientific Data, 6. OA DOI\nEsteban O, Markiewicz CJ, Blair RW et al. (2019). fMRIPrep: a robust preprocessing pipeline for functional MRI. Nature Methods, 16, 111-116. OA DOI\nKebets V, Holmes AJ, Orban C, Tang S, Li J, Sun N, Kong R, Poldrack RA, Yeo BT (2019). Somatosensory-Motor Dysconnectivity Spans Multiple Transdiagnostic Dimensions of Psychopathology. Biological Psychiatry, 86, 779-791. DOI\nKing M, Hernandez-Castillo CR, Poldrack RA, Ivry RB, Diedrichsen J (2019). Functional boundaries in the human cerebellum revealed by a multi-domain task battery. Nature Neuroscience, 22, 1371-1378. OA DOI Data\nLam M, Hill WD, Trampush JW et al. (2019). Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways. The American Journal of Human Genetics, 105, 334-350. OA DOI\nLi M, Han Y, Aburn MJ, Breakspear M, Poldrack RA, Shine JM, Lizier JT (2019). Transitions in information processing dynamics at the whole-brain network level are driven by alterations in neural gain. PLOS Computational Biology, 15, e1006957. OA DOI\nPoldrack RA (2019). The Costs of Reproducibility. Neuron, 101, 11-14. DOI\nPoldrack RA, Feingold F, Frank MJ et al. (2019). The Importance of Standards for Sharing of Computational Models and Data. Computational Brain &amp; Behavior, 2, 229-232. DOI\nPoldrack RA, Gorgolewski KJ, Varoquaux G (2019). Computational and Informatic Advances for Reproducible Data Analysis in Neuroimaging. Annual Review of Biomedical Data Science, 2.0. DOI\nReid AT, Headley DB, Mill RD et al. (2019). Advancing functional connectivity research from association to causation. Nature Neuroscience, 22, 1751-1760. OA DOI\nShine JM, Bell PT, Matar E, Poldrack RA, Lewis SJG, Halliday GM, O’Callaghan C (2019). Dopamine depletion alters macroscopic network dynamics in Parkinson’s disease. Brain, 142, 1024-1034. OA DOI\nShine JM, Breakspear M, Bell PT, Ehgoetz Martens KA, Shine R, Koyejo O, Sporns O, Poldrack RA (2019). Human cognition involves the dynamic integration of neural activity and neuromodulatory systems. Nature Neuroscience, 22, 289-296. DOI\nShine JM, Hearne LJ, Breakspear M, Hwang K, Müller EJ, Sporns O, Poldrack RA, Mattingley JB, Cocchi L (2019). The Low-Dimensional Neural Architecture of Cognitive Complexity Is Related to Activity in Medial Thalamic Nuclei. Neuron, 104, 849-855.e3. DOI\nSmeets PA, Dagher A, Hare TA, Kullmann S, van der Laan LN, Poldrack RA, Preissl H, Small D, Stice E, Veldhuizen MG (2019). Good practice in food-related neuroimaging. The American Journal of Clinical Nutrition, 109, 491-503. OA DOI\nVaroquaux G, Poldrack RA (2019). Predictive models avoid excessive reductionism in cognitive neuroimaging. Current Opinion in Neurobiology, 55, 1-6. DOI\nVerbruggen F, Aron AR, Band GP et al. (2019). A consensus guide to capturing the ability to inhibit actions and impulsive behaviors in the stop-signal task. eLife, 8. OA DOI\nYarkoni T, Markiewicz CJ, de la Vega A et al. (2019). PyBIDS: Python tools for BIDS datasets. J Open Source Softw, 4. OA DOI\nZuo X, Biswal BB, Poldrack RA (2019). Editorial: Reliability and Reproducibility in Functional Connectomics. Frontiers in Neuroscience, 13. DOI\n\n\n2018\nBakkour A, Botvinik-Nezer R, Cohen N, Hover AM, Poldrack RA, Schonberg T (2018). Spacing of cue-approach training leads to better maintenance of behavioral change. PLOS ONE, 13, e0201580. OA DOI OSF\nDavies G, Lam M, Harris SE et al. (2018). Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function. Nature Communications, 9. OA DOI\nDockès J, Wassermann D, Poldrack R, Suchanek F, Thirion B, Varoquaux G (2018). Text to Brain: Predicting the Spatial Distribution of Neuroimaging Observations from Text Reports. In Lecture Notes in Computer Science (p. 584-592). Springer International Publishing. DOI\nEisenberg IW, Bissett PG, Canning JR et al. (2018). Applying novel technologies and methods to inform the ontology of self-regulation. Behaviour Research and Therapy, 101, 46-57. OA DOI OSF\nEsteban O, Poldrack RA, Gorgolewski KJ (2018). Improving Out-of-Sample Prediction of Quality of MRIQC. In Lecture Notes in Computer Science (p. 190-199). Springer International Publishing. DOI\nGorgolewski KJ, Nichols T, Kennedy DN, Poline J, Poldrack RA (2018). Making replication prestigious. Behavioral and Brain Sciences, 41. DOI\nLam M, Trampush JW, Yu J et al. (2018). Multi-Trait Analysis of GWAS and Biological Insights Into Cognition: A Response to Hill (2018). Twin Research and Human Genetics, 21, 394-397. DOI OSF\nMathias SR, Knowles EE, Barrett J, Beetham T, Leach O, Buccheri S, Aberizk K, Blangero J, Poldrack RA, Glahn DC (2018). Deficits in visual working-memory capacity and general cognition in African Americans with psychosis. Schizophrenia Research, 193, 100-106. OA DOI\nNaselaris T, Bassett DS, Fletcher AK, Kording K, Kriegeskorte N, Nienborg H, Poldrack RA, Shohamy D, Kay K (2018). Cognitive Computational Neuroscience: A New Conference for an Emerging Discipline. Trends in Cognitive Sciences, 22, 365-367. OA DOI\nPoldrack RA (2018). The New Mind Readers: What Neuroimaging Can and Cannot Reveal about our Thoughts. Princeton, NJ: Princeton University Press.\nPoldrack RA, Monahan J, Imrey PB, Reyna V, Raichle ME, Faigman D, Buckholtz JW (2018). Predicting Violent Behavior: What Can Neuroscience Add?. Trends in Cognitive Sciences, 22, 111-123. OA DOI OSF\nPoldrack RA, Sandak R (2018). Introduction to This Special Issue: The Cognitive Neuroscience of Reading. In The Cognitive Neuroscience of Reading (p. 199-202). Routledge. DOI\nSavage JE, Jansen PR, Stringer S et al. (2018). Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence. Nature Genetics, 50, 912-919. OA DOI\nShine JM, Aburn MJ, Breakspear M, Poldrack RA (2018). The modulation of neural gain facilitates a transition between functional segregation and integration in the brain. eLife, 7. OA DOI\nShine JM, Poldrack RA (2018). Principles of dynamic network reconfiguration across diverse brain states. NeuroImage, 180, 396-405. DOI\nShine JM, van den Brink RL, Hernaus D, Nieuwenhuis S, Poldrack RA (2018). Catecholaminergic manipulation alters dynamic network topology across cognitive states. Network Neuroscience, 2, 381-396. DOI\nTansey W, Koyejo O, Poldrack RA, Scott JG (2018). False Discovery Rate Smoothing. Journal of the American Statistical Association, 113, 1156-1171. DOI\nVaroquaux G, Schwartz Y, Poldrack RA, Gauthier B, Bzdok D, Poline J, Thirion B (2018). Atlases of cognition with large-scale human brain mapping. PLOS Computational Biology, 14, e1006565. OA DOI\nWhite C, Poldrack RA (2018). Methods for fMRI analysis. In The Stevens’ Handbook of Experimental Psychology and Cognitive Neuroscience, Fourth Edition (Volume 5) (EJ Wagenmakers, Ed.) Wiley. DOI\nWimmer GE, Li JK, Gorgolewski KJ, Poldrack RA (2018). Reward Learning over Weeks Versus Minutes Increases the Neural Representation of Value in the Human Brain. The Journal of Neuroscience, 38, 7649-7666. OA DOI OSF\n\n\n2017\nAcikalin MY, Gorgolewski KJ, Poldrack RA (2017). A Coordinate-Based Meta-Analysis of Overlaps in Regional Specialization and Functional Connectivity across Subjective Value and Default Mode Networks. Frontiers in Neuroscience, 11. DOI\nBakkour A, Lewis-Peacock JA, Poldrack RA, Schonberg T (2017). Neural mechanisms of cue-approach training. NeuroImage, 151, 92-104. OA DOI\nEckert MA, Vaden KI, Maxwell AB et al. (2017). Common Brain Structure Findings Across Children with Varied Reading Disability Profiles. Scientific Reports, 7. OA DOI\nEsteban O, Birman D, Schaer M, Koyejo OO, Poldrack RA, Gorgolewski KJ (2017). MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites. PLOS ONE, 12, e0184661. OA DOI OSF\nGilron R, Rosenblatt J, Koyejo O, Poldrack RA, Mukamel R (2017). What’s in a pattern? Examining the type of signal multivariate analysis uncovers at the group level. NeuroImage, 146, 113-120. DOI\nGorgolewski KJ, Alfaro-Almagro F, Auer T et al. (2017). BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLOS Computational Biology, 13, e1005209. OA DOI\nGorgolewski KJ, Durnez J, Poldrack RA (2017). Preprocessed Consortium for Neuropsychiatric Phenomics dataset. F1000Research, 6, 1262. DOI\nKhanna R, Ghosh J, Poldrack RA, Koyejo O (2017). A Deflation Method for Structured Probabilistic PCA. Proceedings of the 2017 SIAM International Conference on Data Mining. DOI\nKiar G, Gorgolewski KJ, Kleissas D et al. (2017). Science in the cloud (SIC): A use case in MRI connectomics. Giga Science, 6. OA DOI\nLam M, Trampush JW, Yu J et al. (2017). Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets. Cell Reports, 21, 2597-2613. OA DOI\nLenartowicz A, Poldrack R (2017). Brain Imaging. In Encyclopedia of Behavioral Neuroscience, 2nd edition (p. 77-83). Elsevier. DOI\nMathias SR, Knowles EEM, Barrett J, Leach O, Buccheri S, Beetham T, Blangero J, Poldrack RA, Glahn DC (2017). The Processing-Speed Impairment in Psychosis Is More Than Just Accelerated Aging. Schizophrenia Bulletin, sbw168. OA DOI\nNichols TE, Das S, Eickhoff SB et al. (2017). Best practices in data analysis and sharing in neuroimaging using MRI. Nature Neuroscience, 20, 299-303. OA DOI\nPoldrack R (2017). Neuroscience: The risks of reading the brain. Nature, 541, 156-156. DOI\nPoldrack RA (2017). Precision Neuroscience: Dense Sampling of Individual Brains. Neuron, 95, 727-729. DOI\nPoldrack RA, Baker CI, Durnez J, Gorgolewski KJ, Matthews PM, Munafò MR, Nichols TE, Poline J, Vul E, Yarkoni T (2017). Scanning the horizon: towards transparent and reproducible neuroimaging research. Nature Reviews Neuroscience, 18, 115-126. OA DOI OSF\nPoldrack RA, Gorgolewski KJ (2017). OpenfMRI: Open sharing of task fMRI data. NeuroImage, 144, 259-261. OA DOI\nRubin TN, Koyejo O, Gorgolewski KJ, Jones MN, Poldrack RA, Yarkoni T (2017). Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition. PLOS Computational Biology, 13, e1005649. OA DOI\nShine JM, Kucyi A, Foster BL, Bickel S, Wang D, Liu H, Poldrack RA, Hsieh L, Hsiang JC, Parvizi J (2017). Distinct Patterns of Temporal and Directional Connectivity among Intrinsic Networks in the Human Brain. The Journal of Neuroscience, 37, 9667-9674. OA DOI\nTrampush JW, Yang MLZ, Yu J et al. (2017). GWAS meta-analysis reveals novel loci and genetic correlates for general cognitive function: a report from the COGENT consortium. Molecular Psychiatry, 22, 336-345. OA DOI\nXiao X, Dong Q, Gao J, Men W, Poldrack RA, Xue G (2017). Transformed Neural Pattern Reinstatement during Episodic Memory Retrieval. The Journal of Neuroscience, 37, 2986-2998. OA DOI\n\n\n2016\nBakkour A, Leuker C, Hover AM, Giles N, Poldrack RA, Schonberg T (2016). Mechanisms of Choice Behavior Shift Using Cue-approach Training. Frontiers in Psychology, 7. DOI\nEckert MA, Berninger VW, Hoeft F, Vaden KI (2016). A case of Bilateral Perisylvian Syndrome with reading disability. Cortex, 76, 121-124. OA DOI\nEisenberg I, Poldrack RA (2016). Task-set Selection in Probabilistic Environments: a Model of Task-set Inference. Proceedings of Cognitive Science Society.\nGorgolewski KJ, Auer T, Calhoun VD et al. (2016). The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Scientific Data, 3. OA DOI\nGorgolewski KJ, Poldrack RA (2016). A Practical Guide for Improving Transparency and Reproducibility in Neuroimaging Research. PLOS Biology, 14, e1002506. OA DOI\nGorgolewski KJ, Varoquaux G, Rivera G et al. (2016). NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain. NeuroImage, 124, 1242-1244. OA DOI\nHastings J, Frishkoff G, Smith B et al. (2016). Interdyscyplinarne perspektywy rozwoju, integracji i zastosowań ontologii poznawczych. AVANT. The Journal of the Philosophical-Interdisciplinary Vanguard, VII, 101-117. DOI\nHodgson K, Poldrack RA, Curran JE et al. (2016). Shared Genetic Factors Influence Head Motion During MRI and Body Mass Index. Cerebral Cortex. OA DOI\nPatterson TK, Lenartowicz A, Berkman ET, Ji D, Poldrack RA, Knowlton BJ (2016). Putting the brakes on the brakes: negative emotion disrupts cognitive control network functioning and alters subsequent stopping ability. Experimental Brain Research, 234, 3107-3118. OA DOI\nPoldrack R, Congdon E, Triplett W et al. (2016). A phenome-wide examination of neural and cognitive function. Scientific Data, 3. OA DOI Data\nPoldrack RA, Yarkoni T (2016). From Brain Maps to Cognitive Ontologies: Informatics and the Search for Mental Structure. Annual Review of Psychology, 67, 587-612. OA DOI\nShine J, Bissett P, Bell P, Koyejo O, Balsters J, Gorgolewski K, Moodie C, Poldrack R (2016). The Dynamics of Functional Brain Networks: Integrated Network States during Cognitive Task Performance. Neuron, 92, 544-554. OA DOI\nShine JM, Eisenberg I, Poldrack RA (2016). Computational specificity in the human brain. Behavioral and Brain Sciences, 39. DOI\nShine JM, Koyejo O, Poldrack RA (2016). Temporal metastates are associated with differential patterns of time-resolved connectivity, network topology, and attention. Proceedings of the National Academy of Sciences, 113, 9888-9891. OA DOI\nSochat VV, Eisenberg IW, Enkavi AZ, Li J, Bissett PG, Poldrack RA (2016). The Experiment Factory: Standardizing Behavioral Experiments. Frontiers in Psychology, 7. DOI\nWager TD, Atlas LY, Botvinick MM, Chang LJ, Coghill RC, Davis KD, Iannetti GD, Poldrack RA, Shackman AJ, Yarkoni T (2016). Pain in the ACC?. Proceedings of the National Academy of Sciences, 113. OA DOI\nWiener M, Sommer F, Ives Z, Poldrack R, Litt B (2016). Enabling an Open Data Ecosystem for the Neurosciences. Neuron, 92, 617-621. DOI\nWorthy DA, Davis T, Gorlick MA, Cooper JA, Bakkour A, Mumford JA, Poldrack RA, Todd Maddox W (2016). Neural correlates of state-based decision-making in younger and older adults. NeuroImage, 130, 13-23. OA DOI\n\n\n2015\nChen M, Jimura K, White CN, Maddox WT, Poldrack RA (2015). Multiple brain networks contribute to the acquisition of bias in perceptual decision-making. Frontiers in Neuroscience, 9. DOI\nGorgolewski KJ, Varoquaux G, Rivera G et al. (2015). NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain. Frontiers in Neuroinformatics, 9. DOI\nHelfinstein SM, Mumford JA, Poldrack RA (2015). If all your friends jumped off a bridge: The effect of others’ actions on engagement in and recommendation of risky behaviors. Journal of Experimental Psychology: General, 144, 12-17. DOI\nKhanna R, Ghosh J, Poldrack RA, Koyejo O (2015). Sparse submodular probabilistic PCA. Proceedings of the 18th International conference on Artificial Intelligence and Statistics (AISTATS) .\nLaumann T, Gordon E, Adeyemo B et al. (2015). Functional System and Areal Organization of a Highly Sampled Individual Human Brain. Neuron, 87, 657-670. OA DOI Data\nMumford JA, Poline J, Poldrack RA (2015). Orthogonalization of Regressors in fMRI Models. PLOS ONE, 10, e0126255. OA DOI\nPoldrack R (2015). Reverse Inference. In Brain Mapping (p. 647-650). Elsevier. DOI\nPoldrack R (2015). Introduction to Cognitive Neuroscience. In Brain Mapping (p. 259-260). Elsevier. DOI\nPoldrack RA (2015). Is “efficiency” a useful concept in cognitive neuroscience?. Developmental Cognitive Neuroscience, 11, 12-17. OA DOI Code\nPoldrack RA, Farah MJ (2015). Progress and challenges in probing the human brain. Nature, 526, 371-379. DOI\nPoldrack RA, Laumann TO, Koyejo O et al. (2015). Long-term neural and physiological phenotyping of a single human. Nature Communications, 6. OA DOI Data Code\nPoldrack RA, Poline J (2015). The publication and reproducibility challenges of shared data. Trends in Cognitive Sciences, 19, 59-61. DOI\nShine JM, Koyejo O, Bell PT, Gorgolewski KJ, Gilat M, Poldrack RA (2015). Estimation of dynamic functional connectivity using Multiplication of Temporal Derivatives. NeuroImage, 122, 399-407. DOI\nSochat VV, Gorgolewski KJ, Koyejo O, Durnez J, Poldrack RA (2015). Effects of thresholding on correlation-based image similarity metrics. Frontiers in Neuroscience, 9. DOI\n\n\n2014\nAron AR, Robbins TW, Poldrack RA (2014). Right inferior frontal cortex: addressing the rebuttals. Frontiers in Human Neuroscience, 8. DOI\nAron AR, Robbins TW, Poldrack RA (2014). Inhibition and the right inferior frontal cortex: one decade on. Trends in Cognitive Sciences, 18, 177-185. DOI\nCongdon E, Altshuler LL, Mumford JA et al. (2014). Neural activation during response inhibition in adult attention-deficit/hyperactivity disorder: Preliminary findings on the effects of medication and symptom severity. Psychiatry Research: Neuroimaging, 222, 17-28. OA DOI\nDavis T, LaRocque KF, Mumford JA, Norman KA, Wagner AD, Poldrack RA (2014). What do differences between multi-voxel and univariate analysis mean? How subject-, voxel-, and trial-level variance impact fMRI analysis. NeuroImage, 97, 271-283. OA DOI Code\nDavis T, Poldrack RA (2014). Quantifying the Internal Structure of Categories Using a Neural Typicality Measure. Cerebral Cortex, 24, 1720-1737. DOI\nDavis T, Xue G, Love BC, Preston AR, Poldrack RA (2014). Global Neural Pattern Similarity as a Common Basis for Categorization and Recognition Memory. The Journal of Neuroscience, 34, 7472-7484. OA DOI\nHastings J, Frishkoff GA, Smith B, Jensen M, Poldrack RA, Lomax J, Bandrowski A, Imam F, Turner JA, Martone ME (2014). Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies. Frontiers in Neuroinformatics, 8. DOI\nHelfinstein SM, Schonberg T, Congdon E, Karlsgodt KH, Mumford JA, Sabb FW, Cannon TD, London ED, Bilder RM, Poldrack RA (2014). Predicting risky choices from brain activity patterns. Proceedings of the National Academy of Sciences, 111, 2470-2475. OA DOI Data\nJimura K, Cazalis F, Stover ERS, Poldrack RA (2014). The neural basis of task switching changes with skill acquisition. Frontiers in Human Neuroscience, 8. DOI\nKoyejo O, Khanna R, Ghosh J, Poldrack RA (2014). On Prior Distributions and Approximate Inference for Structured Variables. Advances in Neural Information Processing Systems, 27.0.\nMumford JA, Davis T, Poldrack RA (2014). The impact of study design on pattern estimation for single-trial multivariate pattern analysis. NeuroImage, 103, 130-138. DOI\nPoldrack RA, Gorgolewski KJ (2014). Making big data open: data sharing in neuroimaging. Nature Neuroscience, 17, 1510-1517. DOI\nSchonberg T, Bakkour A, Hover AM, Mumford JA, Nagar L, Perez J, Poldrack RA (2014). Changing value through cued approach: an automatic mechanism of behavior change. Nature Neuroscience, 17, 625-630. OA DOI\nSchonberg T, Bakkour A, Hover AM, Mumford JA, Poldrack RA (2014). Influencing Food Choices by Training: Evidence for Modulation of Frontoparietal Control Signals. Journal of Cognitive Neuroscience, 26, 247-268. OA DOI\nThakkar KN, Congdon E, Poldrack RA, Sabb FW, London ED, Cannon TD, Bilder RM (2014). Women are more sensitive than men to prior trial events on the Stop‐signal task. British Journal of Psychology, 105, 254-272. OA DOI\nWagshal D, Knowlton BJ, Cohen JR, Poldrack RA, Bookheimer SY, Bilder RM, Asarnow RF (2014). Impaired automatization of a cognitive skill in first-degree relatives of patients with schizophrenia. Psychiatry Research, 215, 294-299. OA DOI\nWagshal D, Knowlton BJ, Suthana NA, Cohen JR, Poldrack RA, Bookheimer SY, Bilder RM, Asarnow RF (2014). Evidence for Corticostriatal Dysfunction During Cognitive Skill Learning in Adolescent Siblings of Patients With Childhood-Onset Schizophrenia. Schizophrenia Bulletin, 40, 1030-1039. OA DOI\nWhite CN, Congdon E, Mumford JA, Karlsgodt KH, Sabb FW, Freimer NB, London ED, Cannon TD, Bilder RM, Poldrack RA (2014). Decomposing Decision Components in the Stop-signal Task: A Model-based Approach to Individual Differences in Inhibitory Control. Journal of Cognitive Neuroscience, 26, 1601-1614. OA DOI Data\nWhite CN, Poldrack RA (2014). Decomposing bias in different types of simple decisions. Journal of Experimental Psychology: Learning, Memory, and Cognition, 40, 385-398. DOI Data Code\n\n\n2013\nBarch DM, Burgess GC, Harms MP et al. (2013). Function in the human connectome: Task-fMRI and individual differences in behavior. NeuroImage, 80, 169-189. OA DOI\nBrakewood B, Poldrack RA (2013). The ethics of secondary data analysis: Considering the application of Belmont principles to the sharing of neuroimaging data. NeuroImage, 82, 671-676. DOI\nCongdon E, Bato AA, Schonberg T, Mumford JA, Karlsgodt KH, Sabb FW, London ED, Cannon TD, Bilder RM, Poldrack RA (2013). Differences in neural activation as a function of risk-taking task parameters. Frontiers in Neuroscience, 7. DOI\nDavis T, Poldrack RA (2013). Measuring neural representations with fMRI: practices and pitfalls. Annals of the New York Academy of Sciences, 1296, 108-134. DOI\nFox CR, Poldrack RA (2013). Prospect theory and the brain. In Neuroeconomics: Decision Making and the Brain (2nd Edition) (P Glimcher et al. , Ed.) Elsevier.\nGalván A, Schonberg T, Mumford J, Kohno M, Poldrack RA, London ED (2013). Greater risk sensitivity of dorsolateral prefrontal cortex in young smokers than in nonsmokers. Psychopharmacology, 229, 345-355. OA DOI\nHsieh CJ, Sustik MA, Dhillon IS, Ravikumar R, Poldrack RA (2013). BIG & QUIC: Sparse Inverse Covariance Estimation for a Million Variables. Advances in Neural Information Processing Systems .\nKoyejo O, Patel P, Ghosh J, Poldrack RA (2013). Learning Predictive Cognitive Structure from fMRI Using Supervised Topic Models. 2013 International Workshop on Pattern Recognition in Neuroimaging, 9-12. DOI\nMalecek NJ, Poldrack RA (2013). Beyond dopamine: The noradrenergic system and mental effort. Behavioral and Brain Sciences, 36, 698-699. DOI\nPark M, Koyejo O, Ghosh J, Poldrack RA, Pillow JW (2013). Bayesian structure learning for functional neuroimaging. Sixteenth International Conference on Artificial Intelligence and Statistics (AIST ATS). .\nPoldrack RA, Barch DM, Mitchell JP, Wager TD, Wagner AD, Devlin JT, Cumba C, Koyejo O, Milham MP (2013). Toward open sharing of task-based fMRI data: the OpenfMRI project. Frontiers in Neuroinformatics, 7. DOI\nPoline J, Poldrack R (2013). Introduction to the special issue: Toward a new era of databasing and data sharing for neuroimaging. NeuroImage, 82, 645-646. DOI\nVan Essen DC, Smith SM, Barch DM, Behrens TE, Yacoub E, Ugurbil K (2013). The WU-Minn Human Connectome Project: An overview. NeuroImage, 80, 62-79. OA DOI\nWhite CN, Poldrack RA (2013). Using fMRI to Constrain Theories of Cognition. Perspectives on Psychological Science, 8, 79-83. DOI\nXue G, Dong Q, Chen C, Lu Z, Mumford JA, Poldrack RA (2013). Complementary Role of Frontoparietal Activity and Cortical Pattern Similarity in Successful Episodic Memory Encoding. Cerebral Cortex, 23, 1562-1571. OA DOI\n\n\n2012\nCongdon E, Mumford JA, Cohen JR, Galvan A, Canli T, Poldrack RA (2012). Measurement and Reliability of Response Inhibition. Frontiers in Psychology, 3. DOI\nCourtney KE, Arellano R, Barkley‐Levenson E, Gálvan A, Poldrack RA, MacKillop J, David Jentsch J, Ray LA (2012). The Relationship Between Measures of Impulsivity and Alcohol Misuse: An Integrative Structural Equation Modeling Approach. Alcoholism: Clinical and Experimental Research, 36, 923-931. OA DOI\nGhahremani DG, Lee B, Robertson CL et al. (2012). Striatal Dopamine D2/D3Receptors Mediate Response Inhibition and Related Activity in Frontostriatal Neural Circuitry in Humans. The Journal of Neuroscience, 32, 7316-7324. OA DOI\nHelfinstein SM, Poldrack RA (2012). The young and the reckless. Nature Neuroscience, 15, 803-805. DOI\nJimura K, Poldrack RA (2012). Analyses of regional-average activation and multivoxel pattern information tell complementary stories. Neuropsychologia, 50, 544-552. DOI\nMumford JA, Turner BO, Ashby FG, Poldrack RA (2012). Deconvolving BOLD activation in event-related designs for multivoxel pattern classification analyses. NeuroImage, 59, 2636-2643. OA DOI\nPoldrack RA (2012). The future of fMRI in cognitive neuroscience. NeuroImage, 62, 1216-1220. OA DOI\nPoldrack RA, Mumford JA, Schonberg T, Kalar D, Barman B, Yarkoni T (2012). Discovering Relations Between Mind, Brain, and Mental Disorders Using Topic Mapping. PLoS Computational Biology, 8, e1002707. OA DOI Code\nPoline J, Breeze JL, Ghosh S et al. (2012). Data sharing in neuroimaging research. Frontiers in Neuroinformatics, 6. DOI\nPoline J, Poldrack RA (2012). Frontiers in Brain Imaging Methods Grand Challenge. Frontiers in Neuroscience, 6. DOI\nSatpute AB, Mumford JA, Naliboff BD, Poldrack RA (2012). Human anterior and posterior hippocampus respond distinctly to state and trait anxiety. Emotion, 12, 58-68. DOI\nSchonberg T, Fox CR, Mumford JA, Congdon E, Trepel C, Poldrack RA (2012). Decreasing Ventromedial Prefrontal Cortex Activity During Sequential Risk-Taking: An fMRI Investigation of the Balloon Analog Risk Task. Frontiers in Neuroscience, 6. DOI Data\nTurner BO, Mumford JA, Poldrack RA, Ashby FG (2012). Spatiotemporal activity estimation for multivoxel pattern analysis with rapid event-related designs. NeuroImage, 62, 1429-1438. OA DOI\nWagshal D, Knowlton BJ, Cohen JR, Poldrack RA, Bookheimer SY, Bilder RM, Fernandez VG, Asarnow RF (2012). Deficits in probabilistic classification learning and liability for schizophrenia. Psychiatry Research, 200, 167-172. OA DOI\nWhite CN, Mumford JA, Poldrack RA (2012). Perceptual Criteria in the Human Brain. The Journal of Neuroscience, 32, 16716-16724. OA DOI\n\n\n2011\nCohen JR, Asarnow RF, Sabb FW, Bilder RM, Bookheimer SY, Knowlton BJ, Poldrack RA (2011). Decoding Continuous Variables from Neuroimaging Data: Basic and Clinical Applications. Frontiers in Neuroscience, 5. DOI\nGalván A, Poldrack RA, Baker CM, McGlennen KM, London ED (2011). Neural Correlates of Response Inhibition and Cigarette Smoking in Late Adolescence. Neuropsychopharmacology, 36, 970-978. OA DOI\nGhahremani DG, Tabibnia G, Monterosso J, Hellemann G, Poldrack RA, London ED (2011). Effect of Modafinil on Learning and Task-Related Brain Activity in Methamphetamine-Dependent and Healthy Individuals. Neuropsychopharmacology, 36, 950-959. OA DOI\nHübner NO, Assadian O, Poldrack R et al. (2011). Endowashers: an overlooked risk for possible post-endoscopic infections. GMS Krankenhhyg Interdiszip, 6, Doc13. OA DOI\nLenartowicz A, Verbruggen F, Logan GD, Poldrack RA (2011). Inhibition-related Activation in the Right Inferior Frontal Gyrus in the Absence of Inhibitory Cues. Journal of Cognitive Neuroscience, 23, 3388-3399. DOI\nPoldrack R (2011). Inferring Mental States from Neuroimaging Data: From Reverse Inference to Large-Scale Decoding. Neuron, 72, 692-697. OA DOI\nPoldrack RA, Kittur A, Kalar D, Miller E, Seppa C, Gil Y, Parker DS, Sabb FW, Bilder RM (2011). The Cognitive Atlas: Toward a Knowledge Foundation for Cognitive Neuroscience. Frontiers in Neuroinformatics, 5. DOI\nPoldrack RA, Mumford JA, Nichols TE (2011). Handbook of Functional MRI Data Analysis. Cambridge: Cambridge University Press.\nRizk-Jackson A, Stoffers D, Sheldon S, Kuperman J, Dale A, Goldstein J, Corey-Bloom J, Poldrack RA, Aron AR (2011). Evaluating imaging biomarkers for neurodegeneration in pre-symptomatic Huntington’s disease using machine learning techniques. NeuroImage, 56, 788-796. DOI\nSchonberg T, Fox CR, Poldrack RA (2011). Mind the gap: bridging economic and naturalistic risk-taking with cognitive neuroscience. Trends in Cognitive Sciences, 15, 11-19. OA DOI\nStern JM, Caporro M, Haneef Z, Yeh HJ, Buttinelli C, Lenartowicz A, Mumford JA, Parvizi J, Poldrack RA (2011). Functional imaging of sleep vertex sharp transients. Clinical Neurophysiology, 122, 1382-1386. OA DOI\nTabibnia G, Monterosso JR, Baicy K, Aron AR, Poldrack RA, Chakrapani S, Lee B, London ED (2011). Different Forms of Self-Control Share a Neurocognitive Substrate. The Journal of Neuroscience, 31, 4805-4810. OA DOI\nXue G, Mei L, Chen C, Lu Z, Poldrack R, Dong Q (2011). Spaced Learning Enhances Subsequent Recognition Memory by Reducing Neural Repetition Suppression. Journal of Cognitive Neuroscience, 23, 1624-1633. OA DOI\nYarkoni T, Poldrack RA, Nichols TE, Van Essen DC, Wager TD (2011). Large-scale automated synthesis of human functional neuroimaging data. Nature Methods, 8, 665-670. OA DOI\n\n\n2010\nCho S, Moody TD, Fernandino L, Mumford JA, Poldrack RA, Cannon TD, Knowlton BJ, Holyoak KJ (2010). Common and Dissociable Prefrontal Loci Associated with Component Mechanisms of Analogical Reasoning. Cerebral Cortex, 20, 524-533. DOI\nCohen J (2010). Decoding developmental differences and individual variability in response inhibition through predictive analyses across individuals. Frontiers in Human Neuroscience. DOI\nCohen JR, Asarnow RF, Sabb FW, Bilder RM, Bookheimer SY, Knowlton BJ, Poldrack RA (2010). A unique adolescent response to reward prediction errors. Nature Neuroscience, 13, 669-671. OA DOI\nCongdon E, Mumford JA, Cohen JR, Galvan A, Aron AR, Xue G, Miller E, Poldrack RA (2010). Engagement of large-scale networks is related to individual differences in inhibitory control. NeuroImage, 53, 653-663. OA DOI\nCongdon E, Poldrack RA, Freimer NB (2010). Neurocognitive Phenotypes and Genetic Dissection of Disorders of Brain and Behavior. Neuron, 68, 218-230. OA DOI\nCrone EA, Poldrack RA, Durston S (2010). Challenges and methods in developmental neuroimaging. Human Brain Mapping, 31, 835-837. OA DOI\nGhahremani DG, Monterosso J, Jentsch JD, Bilder RM, Poldrack RA (2010). Neural Components Underlying Behavioral Flexibility in Human Reversal Learning. Cerebral Cortex, 20, 1843-1852. OA DOI\nKenner NM, Mumford JA, Hommer RE, Skup M, Leibenluft E, Poldrack RA (2010). Inhibitory Motor Control in Response Stopping and Response Switching. Journal of Neuroscience, 30, 8512-8518. OA DOI\nKriegeskorte N, Lindquist MA, Nichols TE, Poldrack RA, Vul E (2010). Everything You Never Wanted to Know about Circular Analysis, but Were Afraid to Ask. Journal of Cerebral Blood Flow &amp; Metabolism, 30, 1551-1557. OA DOI\nLenartowicz A, Kalar DJ, Congdon E, Poldrack RA (2010). Towards an Ontology of Cognitive Control. Topics in Cognitive Science, 2, 678-692. DOI\nLenartowicz A, Poldrack R (2010). Brain Imaging. In Encyclopedia of Behavioral Neuroscience (p. 187-193). Elsevier. DOI\nMumford JA, Horvath S, Oldham MC, Langfelder P, Geschwind DH, Poldrack RA (2010). Detecting network modules in fMRI time series: A weighted network analysis approach. NeuroImage, 52, 1465-1476. OA DOI\nPoldrack RA (2010). Mapping Mental Function to Brain Structure: How Can Cognitive Neuroimaging Succeed?. Perspectives on Psychological Science, 5, 753-761. DOI\nPoldrack RA (2010). Interpreting developmental changes in neuroimaging signals. Human Brain Mapping, 31, 872-878. OA DOI\nPoldrack RA, Carr V, Foerde K (2010). Flexibility and generalization in memory systems. In Generalization of Knowledge: Multidisciplinary perspectives  (M Banich, D Caccamise , Ed.) New York, NY: Psychology Press..\nPoldrack RA, Mumford JA (2010). On the proper role of non-independent ROI analysis: A commentary on Vul and Kanwisher. In Foundational Issues in Human Brain Mapping (SJ Hanson, M Bunzl, Ed.) Cambridge, MA: MIT Press. DOI\nRamsey J, Hanson S, Hanson C, Halchenko Y, Poldrack R, Glymour C (2010). Six problems for causal inference from fMRI. NeuroImage, 49, 1545-1558. DOI\nScott-Van Zeeland AA, Abrahams BS, Alvarez-Retuerto AI et al. (2010). Altered Functional Connectivity in Frontal Lobe Circuits Is Associated with Variation in the Autism Risk Gene CNTNAP2. Science Translational Medicine, 2. OA DOI\nScott‐Van Zeeland AA, Dapretto M, Ghahremani DG, Poldrack RA, Bookheimer SY (2010). Reward processing in autism. Autism Research, 3, 53-67. OA DOI\nXue G, Dong Q, Chen C, Lu Z, Mumford JA, Poldrack RA (2010). Greater Neural Pattern Similarity Across Repetitions Is Associated with Better Memory. Science, 330, 97-101. OA DOI\nXue G, Mei L, Chen C, Lu Z, Poldrack RA, Dong Q (2010). Facilitating Memory for Novel Characters by Reducing Neural Repetition Suppression in the Left Fusiform Cortex. PLoS ONE, 5, e13204. OA DOI\nYarkoni T, Poldrack RA, Van Essen DC, Wager TD (2010). Cognitive neuroscience 2.0: building a cumulative science of human brain function. Trends in Cognitive Sciences, 14, 489-496. OA DOI\n\n\n2009\nAron A, Poldrack R, Wise S (2009). Cognition: Basal Ganglia Role. In Encyclopedia of Neuroscience (p. 1069-1077). Elsevier. DOI\nAron AR, Wise SP, Poldrack RA (2009). Role of the basal ganglia in cognition. In The New Encyclopedia of Neuroscience (Volume 2) (LR Squire, Ed.) Oxford, UK: Academic Press.\nBarch DM, Braver TS, Carter CS, Poldrack RA, Robbins TW (2009). CNTRICS Final Task Selection: Executive Control. Schizophrenia Bulletin, 35, 115-135. OA DOI\nBilder R, Sabb F, Cannon T, London E, Jentsch J, Parker DS, Poldrack R, Evans C, Freimer N (2009). Phenomics: the systematic study of phenotypes on a genome-wide scale. Neuroscience, 164, 30-42. OA DOI\nBilder RM, Poldrack RA, Parker DS, Reise SP, Jentsch JD, Cannon T, London E, Sabb FW, Foland L, Rizk-Jackson A, Kalar D, Brown N, Carstensen A, Freimer N (2009). Cognitive phenomics. In Handbook of Neuropsychology of Mental Disorders  (S Wood, N Allen, C Pantelis , Ed.) Cambridge: Cambridge University Press.\nBilder RM, Poldrack RA, Parker DS, Reise SP, Jentsch JD, Cannon T, London E, Sabb FW, Foland-Ross L, Rizk-Jackson A, Kalar D, Brown N, Carstensen A, Freimer N (2009). Cognitive phenomics. In The Neuropsychology of Mental Illness (p. 271-282). Cambridge University Press. DOI\nBilder RM, Sabb FW, Parker DS, Kalar D, Chu WW, Fox J, Freimer NB, Poldrack RA (2009). Cognitive ontologies for neuropsychiatric phenomics research. Cognitive Neuropsychiatry, 14, 419-450. OA DOI\nFoerde K, Poldrack R (2009). Procedural Learning in Humans. In Encyclopedia of Neuroscience (p. 1083-1091). Elsevier. DOI\nFox CR, Poldrack RA (2009). Prospect Theory and the Brain. In Neuroeconomics (p. 145-173). Elsevier. DOI\nGhahremani DG, Poldrack RA (2009). Neuroimaging and interactive memory systems. In Neuroimaging of Human MemoryLinking cognitive processes to neural systems (p. 77-88). Oxford University Press. DOI\nGlimcher P, Fehr E, Camerer C, Poldrack RA (Eds.) (2009). Neuroeconomics. San Diego: Academic Press. DOI\nGlimcher PW, Camerer CF, Fehr E, Poldrack RA (2009). Introduction. In Neuroeconomics (p. 1-12). Elsevier. DOI\nLee B, London ED, Poldrack RA et al. (2009). Striatal Dopamine D2/D3Receptor Availability Is Reduced in Methamphetamine Dependence and Is Linked to Impulsivity. The Journal of Neuroscience, 29, 14734-14740. OA DOI\nPoldrack RA, Halchenko YO, Hanson SJ (2009). Decoding the Large-Scale Structure of Brain Function by Classifying Mental States Across Individuals. Psychological Science, 20, 1364-1372. OA DOI\nPoldrack RA, Mumford JA (2009). Independence in ROI analysis: where is the voodoo?. Social Cognitive and Affective Neuroscience, 4, 208-213. OA DOI\nSabb F, Burggren A, Higier R et al. (2009). Challenges in phenotype definition in the whole-genome era: multivariate models of memory and intelligence. Neuroscience, 164, 88-107. OA DOI\nThompson PM, Miller MI, Poldrack RA, Nichols TE, Taylor JE, Worsley KJ, Ratnanather JT (2009). Special Issue on Mathematics in Brain Imaging. NeuroImage, 45, S1-S2. DOI\nVANHORN J (2009). Functional MRI at the crossroads. International Journal of Psychophysiology, 73, 3-9. OA DOI\n\n\n2008\nCOHEN JR, POLDRACK RA (2008). Automaticity in motor sequence learning does not impair response inhibition. Psychonomic Bulletin &amp; Review, 15, 108-115. DOI\nFoerde K, Poldrack RA, Knowlton BJ et al. (2008). Selective corticostriatal dysfunction in schizophrenia: Examination of motor and cognitive skill learning. Neuropsychology, 22, 100-109. DOI\nGluck MA, Poldrack RA, Kéri S (2008). The cognitive neuroscience of category learning. Neuroscience &amp; Biobehavioral Reviews, 32, 193-196. DOI\nKarlsgodt KH, van Erp TG, Poldrack RA, Bearden CE, Nuechterlein KH, Cannon TD (2008). Diffusion Tensor Imaging of the Superior Longitudinal Fasciculus and Working Memory in Recent-Onset Schizophrenia. Biological Psychiatry, 63, 512-518. DOI\nPoldrack RA (2008). The role of fMRI in Cognitive Neuroscience: where do we stand?. Current Opinion in Neurobiology, 18, 223-227. DOI\nPoldrack RA, Fletcher PC, Henson RN, Worsley KJ, Brett M, Nichols TE (2008). Guidelines for reporting an fMRI study. NeuroImage, 40, 409-414. OA DOI\nPoldrack RA, Foerde K (2008). Category learning and the memory systems debate. Neuroscience &amp; Biobehavioral Reviews, 32, 197-205. DOI\nPoldrack RA, Wagner AD (2008). The Interface Between Neuroscience and Psychological Science. Current Directions in Psychological Science, 17, 61-61. DOI\nRaizada RDS (2008). Challenge-driven attention: Interacting frontal and brainstem systems. Frontiers in Human Neuroscience, 1. DOI\nShattuck DW, Mirza M, Adisetiyo V, Hojatkashani C, Salamon G, Narr KL, Poldrack RA, Bilder RM, Toga AW (2008). Construction of a 3D probabilistic atlas of human cortical structures. NeuroImage, 39, 1064-1080. OA DOI\nTohka J, Foerde K, Aron AR, Tom SM, Toga AW, Poldrack RA (2008). Automatic independent component labeling for artifact removal in fMRI. NeuroImage, 39, 1227-1245. OA DOI\nXue G, Aron AR, Poldrack RA (2008). Common Neural Substrates for Inhibition of Spoken and Manual Responses. Cerebral Cortex, 18, 1923-1932. DOI Data\nXue G, Ghahremani DG, Poldrack RA (2008). Neural Substrates for Reversing Stimulus–Outcome and Stimulus–Response Associations. The Journal of Neuroscience, 28, 11196-11204. OA DOI\n\n\n2007\nAron AR, Behrens TE, Smith S, Frank MJ, Poldrack RA (2007). Triangulating a Cognitive Control Network Using Diffusion-Weighted Magnetic Resonance Imaging (MRI) and Functional MRI. The Journal of Neuroscience, 27, 3743-3752. OA DOI\nDevlin JT, Poldrack RA (2007). In praise of tedious anatomy. NeuroImage, 37, 1033-1041. OA DOI\nFoerde K, Poldrack RA, Knowlton BJ (2007). Secondary-task effects on classification learning. Memory &amp; Cognition, 35, 864-874. DOI\nMumford JA, Poldrack RA (2007). Modeling group fMRI data. Social Cognitive and Affective Neuroscience, 2, 251-257. OA DOI\nPoldrack RA (2007). Region of interest analysis for fMRI. Social Cognitive and Affective Neuroscience, 2, 67-70. OA DOI\nPoldrack RA, Devlin JT (2007). On the fundamental role of anatomy in functional imaging: Reply to commentaries on “In praise of tedious anatomy”. NeuroImage, 37, 1066-1068. DOI\nRaizada RD, Poldrack RA (2007). Selective Amplification of Stimulus Differences during Categorical Processing of Speech. Neuron, 56, 726-740. DOI\nThermenos HW, Seidman LJ, Poldrack RA, Peace NK, Koch JK, Faraone SV, Tsuang MT (2007). Elaborative Verbal Encoding and Altered Anterior Parahippocampal Activation in Adolescents and Young Adults at Genetic Risk for Schizophrenia Using fMRI. Biological Psychiatry, 61, 564-574. DOI\nTom SM, Fox CR, Trepel C, Poldrack RA (2007). The Neural Basis of Loss Aversion in Decision-Making Under Risk. Science, 315, 515-518. DOI Data\nXue G, Poldrack RA (2007). The Neural Substrates of Visual Perceptual Learning of Words: Implications for the Visual Word Form Area Hypothesis. Journal of Cognitive Neuroscience, 19, 1643-1655. DOI\n\n\n2006\nAron AR, Gluck MA, Poldrack RA (2006). Long-term test–retest reliability of functional MRI in a classification learning task. NeuroImage, 29, 1000-1006. OA DOI Data\nAron AR, Poldrack RA (2006). Cortical and Subcortical Contributions to Stop Signal Response Inhibition: Role of the Subthalamic Nucleus. The Journal of Neuroscience, 26, 2424-2433. OA DOI\nFoerde K, Knowlton BJ, Poldrack RA (2006). Modulation of competing memory systems by distraction. Proceedings of the National Academy of Sciences, 103, 11778-11783. OA DOI Data\nPOLDRACK R (2006). Can cognitive processes be inferred from neuroimaging data?. Trends in Cognitive Sciences, 10, 59-63. DOI\nPoldrack RA, Willingham DB (2006). Functional neuroimaging of skill learning. In Handbook of Neuroimaging of Cognition, 2nd Edition  (R Cabeza, A Kingstone, Ed.) Cambridge, MA: MIT Press.\nRodriguez PF, Aron A, Poldrack R (2006). Ventral–striatal/nucleus–accumbens sensitivity to prediction errors during classification learning. Human Brain Mapping, 27, 306-313. OA DOI\nSEIDMAN L, THERMENOS H, POLDRACK R, PEACE N, KOCH J, FARAONE S, TSUANG M (2006). Altered brain activation in dorsolateral prefrontal cortex in adolescents and young adults at genetic risk for schizophrenia: An fMRI study of working memory. Schizophrenia Research, 85, 58-72. DOI\nSegonne F, Liu A, Poldrack R, Golland P, Fischl B (2006). Shape-based Discrimination and Classification of Cortical Surfaces. 18th International Conference on Pattern Recognition (ICPR’06), 445-448. DOI\nThermenos HW, Seidman LJ, Poldrack RA, Peace NK, Koch JK, Faraone SV, Tsuang MT (2006). RETRACTED: Elaborative Verbal Encoding and Altered Anterior Parahippocampal Activation in Adolescents and Young Adults at Genetic Risk for Schizophrenia Using fMRI. Biol Psychiatry. DOI\n\n\n2005\nAron AR, Poldrack RA (2005). The Cognitive Neuroscience of Response Inhibition: Relevance for Genetic Research in Attention-Deficit/Hyperactivity Disorder. Biological Psychiatry, 57, 1285-1292. DOI\nBadre D, Poldrack RA, Paré-Blagoev EJ, Insler RZ, Wagner AD (2005). Dissociable Controlled Retrieval and Generalized Selection Mechanisms in Ventrolateral Prefrontal Cortex. Neuron, 47, 907-918. DOI\nGoldstein JM, Jerram M, Poldrack R, Ahern T, Kennedy DN, Seidman LJ, Makris N (2005). Hormonal Cycle Modulates Arousal Circuitry in Women Using Functional Magnetic Resonance Imaging. The Journal of Neuroscience, 25, 9309-9316. OA DOI\nGoldstein JM, Jerram M, Poldrack R, Anagnoson R, Breiter HC, Makris N, Goodman JM, Tsuang MT, Seidman LJ (2005). Sex differences in prefrontal cortical brain activity during fMRI of auditory verbal working memory. Neuropsychology, 19, 509-519. DOI\nKatzir T, Misra M, Poldrack RA (2005). Imaging phonology without print: Assessing the neural correlates of phonemic awareness using fMRI. NeuroImage, 27, 106-115. DOI\nPoldrack RA, Sabb FW, Foerde K, Tom SM, Asarnow RF, Bookheimer SY, Knowlton BJ (2005). The Neural Correlates of Motor Skill Automaticity. The Journal of Neuroscience, 25, 5356-5364. OA DOI\nStone WS, Thermenos HW, Tarbox SI, Poldrack RA, Seidman LJ (2005). Medial temporal and prefrontal lobe activation during verbal encoding following glucose ingestion in schizophrenia: A pilot fMRI study. Neurobiology of Learning and Memory, 83, 54-64. DOI\nThermenos HW, Goldstein JM, Buka SL, Poldrack RA, Koch JK, Tsuang MT, Seidman LJ (2005). The effect of working memory performance on functional MRI in schizophrenia. Schizophrenia Research, 74, 179-194. DOI\nTrepel C, Fox CR, Poldrack RA (2005). Prospect theory on the brain? Toward a cognitive neuroscience of decision under risk. Cognitive Brain Research, 23, 34-50. DOI\nValera EM, Faraone SV, Biederman J, Poldrack RA, Seidman LJ (2005). Functional neuroanatomy of working memory in adults with attention-deficit/hyperactivity disorder. Biological Psychiatry, 57, 439-447. DOI\n\n\n2004\nAron AR, Robbins TW, Poldrack RA (2004). Inhibition and the right inferior frontal cortex. Trends in Cognitive Sciences, 8, 170-177. DOI\nAron AR, Shohamy D, Clark J, Myers C, Gluck MA, Poldrack RA (2004). Human Midbrain Sensitivity to Cognitive Feedback and Uncertainty During Classification Learning. Journal of Neurophysiology, 92, 1144-1152. DOI\nMisra M, Katzir T, Wolf M, Poldrack RA (2004). Neural Systems for Rapid Automatized Naming in Skilled Readers: Unraveling the RAN-Reading Relationship. Scientific Studies of Reading, 8, 241-256. DOI\nPoldrack RA, Rodriguez P (2004). How do memory systems interact? Evidence from human classification learning. Neurobiology of Learning and Memory, 82, 324-332. DOI\nPoldrack RA, Sandak R (2004). Introduction to This Special Issue: The Cognitive Neuroscience of Reading. Scientific Studies of Reading, 8, 199-202. DOI\nPoldrack RA, Wagner AD (2004). What Can Neuroimaging Tell Us About the Mind?. Current Directions in Psychological Science, 13, 177-181. DOI\nShohamy D (2004). Cortico-striatal contributions to feedback-based learning: converging data from neuroimaging and neuropsychology. Brain, 127, 851-859. DOI\nThermenos HW, Seidman LJ, Breiter H, Goldstein JM, Goodman JM, Poldrack R, Faraone SV, Tsuang MT (2004). Functional magnetic resonance imaging during auditory verbal working memory in nonpsychotic relatives of persons with schizophrenia: a pilot study. Biological Psychiatry, 55, 490-500. DOI\nThompson PM, Miller MI, Ratnanather JT, Poldrack RA, Nichols TE (2004). Preface to the special issue. NeuroImage, 23, S1. DOI\n\n\n2003\nBoas DA, Strangman G, Culver JP, Hoge RD, Jasdzewski G, Poldrack RA, Rosen BR, Mandeville JB (2003). Can the cerebral metabolic rate of oxygen be estimated with near-infrared spectroscopy?. Physics in Medicine and Biology, 48, 2405-2418. DOI\nJasdzewski G, Strangman G, Wagner J, Kwong K, Poldrack R, Boas D (2003). Differences in the hemodynamic response to event-related motor and visual paradigms as measured by near-infrared spectroscopy. NeuroImage, 20, 479-488. DOI\nMisra M, Katzir T, Wolf M, Poldrack RA (2003). Neural systems for rapid automatized naming identified using fMRI. Scientific Studies of Reading, 8.0.\nPoldrack RA, Packard MG (2003). Competition among multiple memory systems: converging evidence from animal and human brain studies. Neuropsychologia, 41, 245-251. DOI\nPoldrack RA, Rodriguez P (2003). Sequence Learning. Neuron, 37, 891-893. DOI\nPoldrack RA, Sandak R (2003). Introduction to special issue: The cognitive neuroscience of reading. Scientific Studies of Reading, 8.0.\nSperling R, Chua E, Cocchiarella A, Rand-Giovannetti E, Poldrack R, Schacter DL, Albert M (2003). Putting names to faces:. NeuroImage, 20, 1400-1410. OA DOI\nTemple E, Deutsch GK, Poldrack RA, Miller SL, Tallal P, Merzenich MM, Gabrieli JDE (2003). Neural deficits in children with dyslexia ameliorated by behavioral remediation: Evidence from functional MRI. Proceedings of the National Academy of Sciences, 100, 2860-2865. OA DOI\n\n\n2002\nGolby A, Poldrack R, Illes J, Chen D, Desmond J, Gabrieli J (2002). Memory Lateralization in Medial Temporal Lobe Epilepsy Assessed by Functional MRI. Epilepsia, 43, 855-863. DOI\nPoldrack RA (2002). Neural Systems for Perceptual Skill Learning. Behavioral and Cognitive Neuroscience Reviews, 1, 76-83. DOI\nPoldrack RA, Paré-Blagoev EJ, Grant PE (2002). Pediatric Functional Magnetic Resonance Imaging: Progress and Challenges. Topics in Magnetic Resonance Imaging, 13, 61-70. DOI\n\n\n2001\nGolby AJ (2001). Material-specific lateralization in the medial temporal lobe and prefrontal cortex during memory encoding. Brain, 124, 1841-1854. DOI\nPoldrack RA (2001). A Structural Basis for Developmental Dyslexia:Evidence from Diffusion Tensor Imaging. In Dyslexia, Fluency and the Brain (M Wolf, Ed.) York Press: Timonium, MD.\nPoldrack RA, Clark J, Paré-Blagoev EJ, Shohamy D, Creso Moyano J, Myers C, Gluck MA (2001). Interactive memory systems in the human brain. Nature, 414, 546-550. DOI Data\nPoldrack RA, Gabrieli JDE (2001). Characterizing the neural mechanisms of skill learning and repetition priming. Brain, 124, 67-82. DOI\nPoldrack RA, Temple E, Protopapas A, Nagarajan S, Tallal P, Merzenich M, Gabrieli JDE (2001). Relations between the Neural Bases of Dynamic Auditory Processing and Phonological Processing: Evidence from fMRI. Journal of Cognitive Neuroscience, 13, 687-697. DOI\nTemple E, Poldrack RA, Salidis J, Deutsch GK, Tallal P, Merzenich MM, Gabrieli JDE (2001). Disrupted neural responses to phonological and orthographic processing in dyslexic children: an fMRI study. Neuroreport, 12, 299-307. DOI\nVuilleumier P, Sagiv N, Hazeltine E, Poldrack RA, Swick D, Rafal RD, Gabrieli JDE (2001). Neural fate of seen and unseen faces in visuospatial neglect: A combined event-related functional MRI and event-related potential study. Proceedings of the National Academy of Sciences, 98, 3495-3500. OA DOI\nWagner AD, Paré-Blagoev E, Clark J, Poldrack RA (2001). Recovering Meaning. Neuron, 31, 329-338. DOI\n\n\n2000\nHazeltine E, Poldrack R, Gabrieli JDE (2000). Neural Activation During Response Competition. Journal of Cognitive Neuroscience, 12, 118-129. DOI\nKlingberg T, Hedehus M, Temple E, Salz T, Gabrieli JD, Moseley ME, Poldrack RA (2000). Microstructure of Temporo-Parietal White Matter as a Basis for Reading Ability. Neuron, 25, 493-500. DOI\nPoldrack RA (2000). Imaging Brain Plasticity: Conceptual and Methodological Issues— A Theoretical Review. NeuroImage, 12, 1-13. DOI\nSeger CA, Poldrack RA, Prabhakaran V, Zhao M, Glover GH, Gabrieli JD (2000). Hemispheric asymmetries and individual differences in visual concept learning as measured by functional MRI. Neuropsychologia, 38, 1316-1324. DOI\nSeger CA, Prabhakaran V, Poldrack RA, Gabrieli JDE (2000). Neural activity differs between explicit and implicit learning of artificial grammar strings: An fMRI study. Psychobiology, 28, 283-292. DOI\nTemple E, Poldrack RA, Protopapas A, Nagarajan S, Salz T, Tallal P, Merzenich MM, Gabrieli JDE (2000). Disruption of the neural response to rapid acoustic stimuli in dyslexia: Evidence from functional MRI. Proceedings of the National Academy of Sciences, 97, 13907-13912. OA DOI\n\n\n1999\nDemb JB, Poldrack RA, Gabrieli JDE (1999). Functional neuroimaging of word processing in normal and dyslexic readers. In Converging Methods for Understanding Reading and Dyslexia  (R Klein, P. McMullen, Ed.) Cambridge, MA: MIT Press.\nIlles J, Francis WS, Desmond JE, Gabrieli JD, Glover GH, Poldrack R, Lee CJ, Wagner AD (1999). Convergent Cortical Representation of Semantic Processing in Bilinguals. Brain and Language, 70, 347-363. DOI\nPoldrack RA, Prabhakaran V, Seger CA, Gabrieli JD (1999). Striatal activation during acquisition of a cognitive skill. Neuropsychology, 13, 564-74. DOI\nPoldrack RA, Prabhakaran V, Seger CA, Gabrieli JDE (1999). Striatal activation during acquisition of a cognitive skill. Neuropsychology, 13, 564-574. DOI\nPoldrack RA, Selco SL, Field JE, Cohen NJ (1999). The relationship between skill learning and repetition priming: Experimental and computational analyses. Journal of Experimental Psychology: Learning, Memory, and Cognition, 25, 208-235. DOI\nPoldrack RA, Selco SL, Field JE, Cohen NJ (1999). The relationship between skill learning and repetition priming: experimental and computational analyses. J Exp Psychol Learn Mem Cogn, 25, 208-35. DOI\nPoldrack RA, Wagner AD, Prull MW, Desmond JE, Glover GH, Gabrieli JD (1999). Functional Specialization for Semantic and Phonological Processing in the Left Inferior Prefrontal Cortex. NeuroImage, 10, 15-35. DOI\n\n\n1998\nGabrieli JD, Brewer JB, Poldrack RA (1998). Images of Medial Temporal Lobe Functions in Human Learning and Memory. Neurobiology of Learning and Memory, 70, 275-283. DOI\nGabrieli JDE, Poldrack RA, Desmond JE (1998). The role of left prefrontal cortex in language and memory. Proceedings of the National Academy of Sciences, 95, 906-913. OA DOI\nPoldrack R (1998). The neural basis of visual skill learning: an fMRI study of mirror reading. Cerebral Cortex, 8, 1-10. DOI\nPoldrack RA, Gabrieli JD (1998). Memory and the Brain: What’s Right and What’s Left?. Cell, 93, 1091-1093. DOI\nPoldrack RA, Logan GD (1998). What is the mechanism for fluency in successive recognition?. Acta Psychologica, 98, 167-181. DOI\nWagner AD, Poldrack RA, Eldridge LL, Desmond JE, Glover GH, E. Gabrieli JD (1998). Material-specific lateralization of prefrontal activation during episodic encoding and retrieval. NeuroReport, 9, 3711-3717. DOI\n\n\n1997\nCohen NJ, Poldrack RA, Eichenbaum H (1997). Memory for Items and Memory for Relations in the Procedural/Declarative Memory Framework. Memory, 5, 131-178. DOI\nGabrieli JD, Keane MM, Zarella MM, Poldrack RA (1997). Preservation of Implicit Memory for New Associations in Global Amnesia. Psychological Science, 8, 326-329. DOI\nPoldrack RA, Cohen NJ (1997). Priming of new associations in reading time: What is learned?. Psychonomic Bulletin &amp; Review, 4, 398-402. DOI\nPoldrack RA, Gabrieli JDE (1997). Functional Anatomy of Long-Term Memory. Journal of Clinical Neurophysiology, 14, 294-310. DOI\nPoldrack RA, Logan GD (1997). Fluency and response speed in recognition judgments. Memory &amp; Cognition, 25, 1-10. DOI\n\n\n1996\nPoldrack RA (1996). On testing for stochastic dissociations. Psychonomic Bulletin &amp; Review, 3, 434-448. DOI\n\n\n1994\nPoldrack RA, Cohen NJ (1994). On the representational/computational properties of multiple memory systems. Behavioral and Brain Sciences, 17, 416-417. DOI\n   \nUpdated: 2025-01-24 - Publication list created using autocv",
+    "text": "Coding standards\n\nCode should be readable\nAll lab members should be familiar with principles of readable coding:\n\nArt of Readable Code\nClean Code\n\nCode should be modular\n\nFunctions should do a single thing that is clearly expressed in the name of the function\nFunctions should include a docstring that clearly specifies input and output\n\nCode should be portable\n\nAny absolute paths should be specified as a variable in a single location, or preferably as a command line argument\nAny required environment variables should be clearly described\nAny non-standard requirements (e.g. Python libraries not available through PYPI) should be described with instructions on how to install\n\nImportant functions should be tested",
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-    "title": "The Poldrack Lab \\@Stanford",
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-    "text": "Our lab is focused on understanding how the brain gives rise to adaptive human behaviors. We use a combination of functional neuroimaging, cognitive psychology, and computational modeling to address this question. We also develop tools and infrastructure to make neuroscience more transparent and reproducible.\nIn the Poldrack Lab, we want all of our lab members to feel valued, appreciated, safe, and free to be who they are. We embrace diversity and are committed to preventing discrimination against people based on gender identity or expression, sexual orientation, race, ethnicity, religion, age, neurodiversity, disability status, citizenship, or any other feature that makes them unique.\nWe have an online Lab Guide that outlines our lab’s values, principles, and practices.\nLearn more about our lab’s work:\n\nProjects\nPublications\nPresentations\nSoftware\n\nInterested in participating in a research subject? See our listing of current studies.\nInterested in joining the lab? See our listing of open positions.\n\nThis work is licensed under a Creative Commons Attribution 4.0 International License.",
+    "text": "The Poldrack lab is always looking for talented graduate students and postdoctoral researchers interested in our core research topics. See our current list of research projects to learn more about the lab’s ongoing work, and the lab mentoring policies to learn more about the graduate programs that the laboratory is affiliated with and Dr. Poldrack’s mentoring philosophy.",
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-    "text": "PI\n\n  \n  Russ Poldrack  \n  \n\n\nResearch Scientists\n\n  \n  Patrick Bissett \n  \n  Joshua Buckholtz \n  \n  Michael Demidenko  \n  \n  Chris Markiewicz  \n  \n  Jeanette Mumford  \n  \n\n\nPostdoctoral Scholars\n\n  \n  Eric Bridgeford \n  \n  Anita Jwa \n  \n\n\nGraduate Students\n\n  \n  Lynde Folsom \n  \n  Nastasia Klevak \n  \n  Jocelyn Ricard\n  \n  Gustavo Santiago-Reyes \n  \n  Anna Xu \n  \n\n\nResearch Staff\n\n  \n  Kriti Achyutuni\n  \n  Logan Bennett\n  \n  Margot Mitchell\n  \n  Joe Wexler\n  \n\n\nSoftware Developers\n\n  \n  Ross Blair\n  \n  Mathias Goncalves  \n  \n  Nell Hardcastle  \n  \n  Greg Noack\n  \n\n\nLab Alumni\n\n  \n  Adam Aron\n  \n  Akram Bakkour\n  \n  Austin Brotman\n  \n  Mei-Yen Chen\n  \n  Naomi Cherne\n  \n  Rastko Ciric\n  \n  Jessica Cohen\n  \n  Eliza Congdon\n  \n  Tyler Davis\n  \n  Elizabeth DuPre\n  \n  Joke Durnez\n  \n  Ian Eisenberg\n  \n  Ayse Zeynep Enkavi\n  \n  Oscar Esteban\n  \n  Karin Foerde\n  \n  Adriana Galvan\n  \n  Marta Garrido\n  \n  Dara Ghahremani\n  \n  Chris Gorgolewski\n  \n  Grace Huckins\n  \n  Paul Jaffe\n  \n  Koji Jimura\n  \n  Don Kalar\n  \n  Sanmi Koyejo\n  \n  Agatha Lenartowicz\n  \n  Romy Lorenz\n  \n  Nick Malecek\n  \n  Dana Mastrovito\n  \n  Craig Moodie\n  \n  Martin Norgaard  \n  \n  Rajeev Raizada\n  \n  Jaime Rios\n  \n  Angela Rizk-Jackson\n  \n  Ajay Satpute\n  \n  Tom Schonberg\n  \n  Sunjae Shim\n  \n  Mac Shine\n  \n  Vanessa Sochat\n  \n  Elena Stover\n  \n  Armin Thomas\n  \n  William Thompson\n  \n  Christopher Trepel\n  \n  Matilde Vaghi\n  \n  Jonathan Walters\n  \n  Corey White\n  \n  Eliott Wimmer\n  \n  Alara Wright\n  \n  Gui Xue\n  \n\n\n\nNo matching items",
+    "text": "Please note, these project are active as of August 2023. If you take our screener, we’ll be sure to contact you as soon as possible if you’re eligible.\n\n\nWe currently have the following opportunities available for research participants:\n\n\nJoin us as a participant!\n\nThe Poldrack Lab is recruiting volunteers for studies of how learning works in the brain. These studies involve 1-10 sessions, lasting up to 2-3 hours each. During each session, you will be scanned using functional magnetic resonance imaging and/or perform computerized or paper and pencil behavioral tests.\nEligible participants must be between 18 and 40 years old, native speakers of English, have uncorrected vision (or corrected vision with contacts), free of neurological illness, and have no metallic implants in or on their body.\nEligible participants will be compensated $20/hour for participation, and a $250 completion bonus for completing all 10 scanning and behavioral task sessions.\nFor general information about participants rights, contact 1-866-680-2906.\nIf you are interested, please fill out the recruitment form here: https://redcap.link/fiveweekscanstudy.\n\nJoin us as a participant!\n\n\nThe Poldrack Lab is recruiting volunteers for studies of how learning, decision making, and executive function work in the brain.  These studies involve 12 sessions lasting from 1.5 - 2 hours each. During each session, you will be scanned using functional magnetic resonance imaging and/or perform computerized or paper and pencil behavioral tests.\n\n\nEligible participants must be between 18 and 50 years old, speak English fluently, be right-handed, free of psychiatric and neurological illness, have no metallic implants in or on their body, have no history of eating disorder, and have no food allergies.\n\n\nYou may receive a total of $820 as payment for your participation, which is $20/hr for all sessions, and a $250 completion bonus for completing all 12 scanning sessions and post-scan tasks, and $200 for completing the behavioral tasks.\n\n\nFor general information about participants rights, contact 1-866-680-2906.\n\n\nIf you are interested, please fill out the recruitment form here https://redcap.stanford.edu/surveys/?s=WYFLTRCFA8.",
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-    "text": "Please note, these project are active as of June 2023. If you take our screener, we’ll be sure to contact you as soon as possible if you’re eligible.\n\n\nWe currently have the following opportunities available for research participants:\n\n\nJoin us as a participant!\n\n\nThe Poldrack Lab is recruiting volunteers for studies of how learning, decision making, and executive function work in the brain.  These studies involve 12 sessions lasting from 1.5 - 2 hours each. During each session, you will be scanned using functional magnetic resonance imaging and/or perform computerized or paper and pencil behavioral tests.\n\n\nEligible participants must be between 18 and 50 years old, speak English fluently, be right-handed, free of psychiatric and neurological illness, have no metallic implants in or on their body, have no history of eating disorder, and have no food allergies.\n\n\nYou may receive a total of $630 as payment for your participation, which is $15/hr for all sessions, and a $210 completion bonus for completing all 12 scanning sessions and post-scan tasks, and $150 for completing the behavioral tasks.\n\n\nFor general information about participants rights, contact 1-866-680-2906.\n\n\nIf you are interested, please fill out the recruitment form here https://redcap.stanford.edu/surveys/?s=WYFLTRCFA8.\n\n\n\nIf you are a Stanford undergraduate interested in volunteering as a research assistant in the Poldrack Lab, you can sign up here.  Please note that we do not accept minors as volunteers in the laboratory."
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-    "text": "Please note, these project are active as of August 2023. If you take our screener, we’ll be sure to contact you as soon as possible if you’re eligible.\n\n\nWe currently have the following opportunities available for research participants:\n\n\nJoin us as a participant!\n\nThe Poldrack Lab is recruiting volunteers for studies of how learning works in the brain. These studies involve 1-10 sessions, lasting up to 2-3 hours each. During each session, you will be scanned using functional magnetic resonance imaging and/or perform computerized or paper and pencil behavioral tests.\nEligible participants must be between 18 and 40 years old, native speakers of English, have uncorrected vision (or corrected vision with contacts), free of neurological illness, and have no metallic implants in or on their body.\nEligible participants will be compensated $20/hour for participation, and a $250 completion bonus for completing all 10 scanning and behavioral task sessions.\nFor general information about participants rights, contact 1-866-680-2906.\nIf you are interested, please fill out the recruitment form here: https://redcap.link/fiveweekscanstudy.\n\nJoin us as a participant!\n\n\nThe Poldrack Lab is recruiting volunteers for studies of how learning, decision making, and executive function work in the brain.  These studies involve 12 sessions lasting from 1.5 - 2 hours each. During each session, you will be scanned using functional magnetic resonance imaging and/or perform computerized or paper and pencil behavioral tests.\n\n\nEligible participants must be between 18 and 50 years old, speak English fluently, be right-handed, free of psychiatric and neurological illness, have no metallic implants in or on their body, have no history of eating disorder, and have no food allergies.\n\n\nYou may receive a total of $820 as payment for your participation, which is $20/hr for all sessions, and a $250 completion bonus for completing all 12 scanning sessions and post-scan tasks, and $200 for completing the behavioral tasks.\n\n\nFor general information about participants rights, contact 1-866-680-2906.\n\n\nIf you are interested, please fill out the recruitment form here https://redcap.stanford.edu/surveys/?s=WYFLTRCFA8.",
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+    "text": "Please note, these project are active as of June 2023. If you take our screener, we’ll be sure to contact you as soon as possible if you’re eligible.\n\n\nWe currently have the following opportunities available for research participants:\n\n\nJoin us as a participant!\n\n\nThe Poldrack Lab is recruiting volunteers for studies of how learning, decision making, and executive function work in the brain.  These studies involve 12 sessions lasting from 1.5 - 2 hours each. During each session, you will be scanned using functional magnetic resonance imaging and/or perform computerized or paper and pencil behavioral tests.\n\n\nEligible participants must be between 18 and 50 years old, speak English fluently, be right-handed, free of psychiatric and neurological illness, have no metallic implants in or on their body, have no history of eating disorder, and have no food allergies.\n\n\nYou may receive a total of $630 as payment for your participation, which is $15/hr for all sessions, and a $210 completion bonus for completing all 12 scanning sessions and post-scan tasks, and $150 for completing the behavioral tasks.\n\n\nFor general information about participants rights, contact 1-866-680-2906.\n\n\nIf you are interested, please fill out the recruitment form here https://redcap.stanford.edu/surveys/?s=WYFLTRCFA8.\n\n\n\nIf you are a Stanford undergraduate interested in volunteering as a research assistant in the Poldrack Lab, you can sign up here.  Please note that we do not accept minors as volunteers in the laboratory."
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+    "text": "PI\n\n  \n  Russ Poldrack  \n  \n\n\nResearch Scientists\n\n  \n  Patrick Bissett \n  \n  Joshua Buckholtz \n  \n  Michael Demidenko  \n  \n  Chris Markiewicz  \n  \n  Jeanette Mumford  \n  \n\n\nPostdoctoral Scholars\n\n  \n  Eric Bridgeford \n  \n  Anita Jwa \n  \n\n\nGraduate Students\n\n  \n  Lynde Folsom \n  \n  Nastasia Klevak \n  \n  Jocelyn Ricard \n  \n  Gustavo Santiago-Reyes \n  \n  Anna Xu \n  \n\n\nResearch Staff\n\n  \n  Kriti Achyutuni\n  \n  Logan Bennett\n  \n  Margot Mitchell\n  \n  Joe Wexler\n  \n\n\nSoftware Developers\n\n  \n  Ross Blair\n  \n  Mathias Goncalves  \n  \n  Nell Hardcastle  \n  \n  Greg Noack\n  \n\n\nLab Alumni\n\n  \n  Adam Aron\n  \n  Akram Bakkour\n  \n  Austin Brotman\n  \n  Mei-Yen Chen\n  \n  Naomi Cherne\n  \n  Rastko Ciric\n  \n  Jessica Cohen\n  \n  Eliza Congdon\n  \n  Tyler Davis\n  \n  Elizabeth DuPre\n  \n  Joke Durnez\n  \n  Ian Eisenberg\n  \n  Ayse Zeynep Enkavi\n  \n  Oscar Esteban\n  \n  Karin Foerde\n  \n  Adriana Galvan\n  \n  Marta Garrido\n  \n  Dara Ghahremani\n  \n  Chris Gorgolewski\n  \n  Grace Huckins\n  \n  Paul Jaffe\n  \n  Koji Jimura\n  \n  Don Kalar\n  \n  Sanmi Koyejo\n  \n  Agatha Lenartowicz\n  \n  Romy Lorenz\n  \n  Nick Malecek\n  \n  Dana Mastrovito\n  \n  Craig Moodie\n  \n  Martin Norgaard  \n  \n  Rajeev Raizada\n  \n  Jaime Rios\n  \n  Angela Rizk-Jackson\n  \n  Ajay Satpute\n  \n  Tom Schonberg\n  \n  Sunjae Shim\n  \n  Mac Shine\n  \n  Vanessa Sochat\n  \n  Elena Stover\n  \n  Armin Thomas\n  \n  William Thompson\n  \n  Christopher Trepel\n  \n  Matilde Vaghi\n  \n  Jonathan Walters\n  \n  Corey White\n  \n  Eliott Wimmer\n  \n  Alara Wright\n  \n  Gui Xue\n  \n\n\n\nNo matching items",
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-    "text": "The Poldrack lab is always looking for talented graduate students and postdoctoral researchers interested in our core research topics. See our current list of research projects to learn more about the lab’s ongoing work, and the lab mentoring policies to learn more about the graduate programs that the laboratory is affiliated with and Dr. Poldrack’s mentoring philosophy.",
+    "text": "Our lab is focused on understanding how the brain gives rise to adaptive human behaviors. We use a combination of functional neuroimaging, cognitive psychology, and computational modeling to address this question. We also develop tools and infrastructure to make neuroscience more transparent and reproducible.\nIn the Poldrack Lab, we want all of our lab members to feel valued, appreciated, safe, and free to be who they are. We embrace diversity and are committed to preventing discrimination against people based on gender identity or expression, sexual orientation, race, ethnicity, religion, age, neurodiversity, disability status, citizenship, or any other feature that makes them unique.\nWe have an online Lab Guide that outlines our lab’s values, principles, and practices.\nLearn more about our lab’s work:\n\nProjects\nPublications\nPresentations\nSoftware\n\nInterested in participating in a research subject? See our listing of current studies.\nInterested in joining the lab? See our listing of open positions.\n\nThis work is licensed under a Creative Commons Attribution 4.0 International License.",
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-    "text": "Coding standards\n\nCode should be readable\nAll lab members should be familiar with principles of readable coding:\n\nArt of Readable Code\nClean Code\n\nCode should be modular\n\nFunctions should do a single thing that is clearly expressed in the name of the function\nFunctions should include a docstring that clearly specifies input and output\n\nCode should be portable\n\nAny absolute paths should be specified as a variable in a single location, or preferably as a command line argument\nAny required environment variables should be clearly described\nAny non-standard requirements (e.g. Python libraries not available through PYPI) should be described with instructions on how to install\n\nImportant functions should be tested",
+    "text": "2025\nQuah SKL, Jo B, Geniesse C, Uddin LQ, Mumford JA, Barch DM, Fair DA, Gotlib IH, Poldrack RA, Saggar M (2025). A data-driven latent variable approach to validating the research domain criteria framework. Nat Commun, 16, 830. OA DOI\n\n\n2024\nBissett PG, Eisenberg IW, Shim S et al. (2024). Cognitive tasks, anatomical MRI, and functional MRI data evaluating the construct of self-regulation. Scientific Data, 11. OA DOI\nBrumback AC, Ngiam WXQ, Lapato DM et al. (2024). Catalyzing communities of research rigour champions. Brain Communications, 6. DOI\nCiric R, Xu A, Poldrack RA (2024). hyve, a compositional visualisation engine for brain imaging data. bioRxiv. OA DOI\nDean DC, Tisdall MD, Wisnowski JL et al. (2024). Quantifying brain development in the HEALthy Brain and Child Development (HBCD) Study: The magnetic resonance imaging and spectroscopy protocol. Dev Cogn Neurosci, 70, 101452. OA DOI\nDemidenko MI, Mumford JA, Poldrack RA (2024). Impact of analytic decisions on test-retest reliability of individual and group estimates in functional magnetic resonance imaging: a multiverse analysis using the monetary incentive delay task. bioRxiv. OA DOI\nDemidenko MI, Mumford JA, Ram N, Poldrack RA (2024). A multi-sample evaluation of the measurement structure and function of the modified monetary incentive delay task in adolescents. Developmental Cognitive Neuroscience, 65, 101337. OA DOI\nEkhtiari H, Zare-Bidoky M, Sangchooli A et al. (2024). Reporting checklists in neuroimaging: promoting transparency, replicability, and reproducibility. Neuropsychopharmacology, 50, 67-84. OA DOI\nHagen MP, Provins C, MacNicol E et al. (2024). Quality assessment and control of unprocessed anatomical, functional, and diffusion MRI of the human brain using MRIQC. bioRxiv. OA DOI\nHayashi S, Caron BA, Heinsfeld AS et al. (2024). brainlife.io: a decentralized and open-source cloud platform to support neuroscience research. Nature Methods, 21, 809-813. OA DOI\nHuckins G, Poldrack RA (2024). Generative dynamical models for classification of rsfMRI data. Netw Neurosci, 8, 1613-1633. OA DOI\nKapoor S, Cantrell EM, Peng K et al. (2024). REFORMS: Consensus-based Recommendations for Machine-learning-based Science. Science Advances, 10. OA DOI\nKovacs M, Varga MA, Dianovics D, Poldrack RA, Aczel B (2024). Opening the black box of article retractions: exploring the causes and consequences of data management errors. R Soc Open Sci, 11, 240844. OA DOI\nLi X, Bianchini Esper N, Ai L et al. (2024). Moving beyond processing- and analysis-related variation in resting-state functional brain imaging. Nature Human Behaviour, 8, 2003-2017. DOI\nMadsen SJ, Uddin LQ, Mumford JA, Barch DM, Fair DA, Gotlib IH, Poldrack RA, Kuceyeski A, Saggar M (2024). Predicting Task Activation Maps from Resting-State Functional Connectivity using Deep Learning. bioRxiv. OA DOI\nMumford JA, Bissett PG, Jones HM, Shim S, Rios JAH, Poldrack RA (2024). The response time paradox in functional magnetic resonance imaging analyses. Nature Human Behaviour, 8, 349-360. DOI Data Code\nPoldrack RA, Markiewicz CJ, Appelhoff S et al. (2024). The past, present, and future of the brain imaging data structure (BIDS). Imaging Neurosci (Camb), 2, 1-19. OA DOI\nPoldrack RA, Markiewicz CJ, Appelhoff S et al. (2024). The Past, Present, and Future of the Brain Imaging Data Structure (BIDS). ArXiv. OA\nQuah SKL, Jo B, Geniesse C, Uddin LQ, Mumford JA, Barch DM, Fair DA, Gotlib IH, Poldrack RA, Saggar M (2024). A Data-Driven Latent Variable Approach to Validating the Research Domain Criteria Framework. bioRxiv. OA DOI\nWannan CMJ, Nelson B, Addington J et al. (2024). Accelerating Medicines Partnership® Schizophrenia (AMP® SCZ): Rationale and Study Design of the Largest Global Prospective Cohort Study of Clinical High Risk for Psychosis. Schizophrenia Bulletin, 50, 496-512. OA DOI\n\n\n2023\nBirk JL, Otto MW, Cornelius T, Poldrack RA, Edmondson D (2023). Improving the Rigor of Mechanistic Behavioral Science: The Introduction of the Checklist for Investigating Mechanisms in Behavior-Change Research (CLIMBR). Behavior Therapy, 54, 708-713. OA DOI\nBissett PG, Eisenberg IW, Shim S et al. (2023). Cognitive tasks, anatomical MRI, and functional MRI data evaluating the construct of self-regulation. bioRxiv. OA DOI\nBissett PG, Jones HM, Hagen MP, Bui TT, Li JK, Rios JAH, Mumford JA, Shine JM, Poldrack RA (2023). A dual-task approach to inform the taxonomy of inhibition-related processes. Journal of Experimental Psychology: Human Perception and Performance, 49, 277-289. OA DOI Data Code OSF\nFinn ES, Poldrack RA, Shine JM (2023). Functional neuroimaging as a catalyst for integrated neuroscience. Nature, 623, 263-273. DOI\nGanz M, Poldrack RA (2023). Data sharing in neuroimaging: experiences from the BIDS project. Nature Reviews Neuroscience, 24, 729-730. DOI\nJaffe PI, Poldrack RA, Schafer RJ, Bissett PG (2023). Modelling human behaviour in cognitive tasks with latent dynamical systems. Nature Human Behaviour, 7, 986-1000. DOI Data Code\nKiar G, Clucas J, Feczko E et al. (2023). Align with the NMIND consortium for better neuroimaging. Nature Human Behaviour, 7, 1027-1028. OA DOI\nPernet C, Svarer C, Blair R, Van Horn JD, Poldrack RA (2023). On the Long-term Archiving of Research Data. Neuroinformatics, 21, 243-246. DOI\nPoldrack RA (2023). Statistical Thinking: Analyzing Data in an Uncertain World. Princeton, NJ: Princeton University Press.\nSubash P, Gray A, Boswell M et al. (2023). A comparison of neuroelectrophysiology databases. Scientific Data, 10. OA DOI\nThomas AW, Ré C, Poldrack RA (2023). Benchmarking explanation methods for mental state decoding with deep learning models. NeuroImage, 273, 120109. OA DOI Code\nUddin LQ, Betzel RF, Cohen JR et al. (2023). Controversies and progress on standardization of large-scale brain network nomenclature. Network Neuroscience, 7, 864-905. DOI\n\n\n2022\nAdebimpe A, Bertolero M, Dolui S et al. (2022). ASLPrep: a platform for processing of arterial spin labeled MRI and quantification of regional brain perfusion. Nature Methods, 19, 683-686. OA DOI\nBissett PG, Poldrack RA (2022). Estimating the Time to Do Nothing: Toward Next-Generation Models of Response Inhibition. Current Directions in Psychological Science, 31, 556-563. DOI\nCiric R, Thompson WH, Lorenz R et al. (2022). TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models. Nature Methods, 19, 1568-1571. OA DOI\nCiric R, Thomas AW, Esteban O, Poldrack RA (2022). Differentiable programming for functional connectomics. Proceedings of the 2nd Machine Learning for Health symposium, PMLR , 193.0.\nDelorme A, Truong D, Youn C, Sivagnanam S, Stirm C, Yoshimoto K, Poldrack RA, Majumdar A, Makeig S (2022). NEMAR: an open access data, tools and compute resource operating on neuroelectromagnetic data. Database, 2022. OA DOI\nJwa AS, Poldrack RA (2022). The spectrum of data sharing policies in neuroimaging data repositories. Human Brain Mapping, 43, 2707-2721. OA DOI\nParet C, Unverhau N, Feingold F, Poldrack RA, Stirner M, Schmahl C, Sicorello M (2022). Survey on Open Science Practices in Functional Neuroimaging. NeuroImage, 257, 119306. DOI\nPoline J, Kennedy DN, Sommer FT et al. (2022). Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data. Neuroinformatics, 20, 507-512. OA DOI\nScherer EA, Metcalf SA, Whicker CL et al. (2022). Momentary Influences on Self-Regulation in Two Populations With Health Risk Behaviors: Adults Who Smoke and Adults Who Are Overweight and Have Binge-Eating Disorder. Frontiers in Digital Health, 4. DOI\nScholz C, Chan H, Poldrack RA, de Ridder DTD, Smidts A, van der Laan LN (2022). Can we have a second helping? A preregistered direct replication study on the neurobiological mechanisms underlying self‐control. Human Brain Mapping, 43, 4995-5016. OA DOI\nThomas AW, Ré C, Poldrack RA (2022). Interpreting mental state decoding with deep learning models. Trends in Cognitive Sciences, 26, 972-986. DOI\nThomas AW, Ré C, Poldrack RA (2022). Self-Supervised Learning of Brain Dynamics from Broad Neuroimaging Data. Advances in Neural Information Processing Systems 35 (NeurIPS 2022).\nVaghi MM, Hagen MP, Jones HM, Mumford JA, Bissett PG, Poldrack RA (2022). Relating psychiatric symptoms and self-regulation during the COVID-19 crisis. Translational Psychiatry, 12. OA DOI\nWalters J, King M, Bissett PG, Ivry RB, Diedrichsen J, Poldrack RA (2022). Predicting brain activation maps for arbitrary tasks with cognitive encoding models. NeuroImage, 263, 119610. OA DOI\nWimmer GE, Poldrack RA (2022). Reward learning and working memory: Effects of massed versus spaced training and post-learning delay period. Memory &amp; Cognition, 50, 312-324. OA DOI\nde la Vega A, Rocca R, Blair RW, Markiewicz CJ, Mentch J, Kent JD, Herholz P, Ghosh SS, Poldrack RA, Yarkoni T (2022). Neuroscout, a unified platform for generalizable and reproducible fMRI research. eLife, 11. OA DOI\n\n\n2021\nAczel B, Szaszi B, Nilsonne G et al. (2021). Consensus-based guidance for conducting and reporting multi-analyst studies. eLife, 10. OA DOI\nBeam E, Potts C, Poldrack RA, Etkin A (2021). A data-driven framework for mapping domains of human neurobiology. Nature Neuroscience, 24, 1733-1744. OA DOI Data Code\nBissett PG, Hagen MP, Jones HM, Poldrack RA (2021). Design issues and solutions for stop-signal data from the Adolescent Brain Cognitive Development (ABCD) study. eLife, 10. OA DOI Code\nBissett PG, Jones HM, Poldrack RA, Logan GD (2021). Severe violations of independence in response inhibition tasks. Science Advances, 7. OA DOI Data Code\nDelorme A, Truong D, Martinez-Cancino R, Pernet C, Sivagnanam S, Yoshimoto K, Poldrack R, Majumdar A, Makeig S (2021). Tools for Importing and Evaluating BIDS-EEG Formatted Data. 2021 10th International IEEE/EMBS Conference on Neural Engineering (NER), 210-213. DOI\nEnkavi AZ, Poldrack RA (2021). Implications of the Lacking Relationship Between Cognitive Task and Self-report Measures for Psychiatry. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, 6, 670-672. DOI\nFox AS, Holley D, Klink PC et al. (2021). Sharing voxelwise neuroimaging results from rhesus monkeys and other species with Neurovault. NeuroImage, 225, 117518. OA DOI\nKoenis MMG, Durnez J, Rodrigue AL et al. (2021). Associations of cannabis use disorder with cognition, brain structure, and brain function inAfrican Americans. Human Brain Mapping, 42, 1727-1741. OA DOI\nLam M, Chen C, Ge T et al. (2021). Identifying nootropic drug targets via large-scale cognitive GWAS and transcriptomics. Neuropsychopharmacology, 46, 1788-1801. OA DOI\nLevitis E, van Praag CDG, Gau R et al. (2021). Centering inclusivity in the design of online conferences—An OHBM–Open Science perspective. GigaScience, 10. OA DOI\nMacNicol E, Ciric R, Kim E, Censo DD, Cash D, Poldrack RA, Esteban O (2021). Atlas-Based Brain Extraction Is Robust Across RAT MRI Studies. 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 312-315. DOI\nManapat PD, Edwards MC, MacKinnon DP, Poldrack RA, Marsch LA (2021). A Psychometric Analysis of the Brief Self-Control Scale. Assessment, 28, 395-412. OA DOI\nMarkiewicz CJ, Gorgolewski KJ, Feingold F et al. (2021). The OpenNeuro resource for sharing of neuroscience data. eLife, 10. OA DOI\nMazza GL, Smyth HL, Bissett PG et al. (2021). Correlation Database of 60 Cross-Disciplinary Surveys and Cognitive Tasks Assessing Self-Regulation. Journal of Personality Assessment, 103, 238-245. OA DOI Data\nMcNeish D, Mackinnon DP, Marsch LA, Poldrack RA (2021). Measurement in Intensive Longitudinal Data. Structural Equation Modeling: A Multidisciplinary Journal, 28, 807-822. DOI\nPoldrack RA (2021). The physics of representation. Synthese, 199, 1307-1325. DOI\nPoldrack RA (2021). Diving into the deep end: a personal reflection on the MyConnectome study. Current Opinion in Behavioral Sciences, 40, 1-4. DOI\nPoldrack RA (2021). Hard To Break: Why Our Brains Make Habits Stick. Princeton, NJ: Princeton University Press.\nRodrigue AL, Mastrovito D, Esteban O et al. (2021). Searching for Imaging Biomarkers of Psychotic Dysconnectivity. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, 6, 1135-1144. OA DOI\nZmigrod L, Eisenberg IW, Bissett PG, Robbins TW, Poldrack RA (2021). The cognitive and perceptual correlates of ideological attitudes: a data-driven approach. Philosophical Transactions of the Royal Society B: Biological Sciences, 376, 20200424. OA DOI\n\n\n2020\nAron AR, Ivry RB, Jeffery KJ, Poldrack RA, Schmidt R, Summerfield C, Urai AE (2020). How Can Neuroscientists Respond to the Climate Emergency?. Neuron, 106, 17-20. DOI\nBassett DS, Cullen KE, Eickhoff SB et al. (2020). Reflections on the past two decades of neuroscience. Nature Reviews Neuroscience, 21, 524-534. DOI\nBielczyk NZ, Ando A, Badhwar A et al. (2020). Effective Self-Management for Early Career Researchers in the Natural and Life Sciences. Neuron, 106, 212-217. OA DOI OSF\nBotvinik-Nezer R, Holzmeister F, Camerer CF et al. (2020). Variability in the analysis of a single neuroimaging dataset by many teams. Nature, 582, 84-88. OA DOI\nColenbier N, Van de Steen F, Uddin LQ, Poldrack RA, Calhoun VD, Marinazzo D (2020). Disambiguating the role of blood flow and global signal with partial information decomposition. NeuroImage, 213, 116699. DOI\nDockès J, Poldrack RA, Primet R, Gözükan H, Yarkoni T, Suchanek F, Thirion B, Varoquaux G (2020). NeuroQuery, comprehensive meta-analysis of human brain mapping. eLife, 9. OA DOI\nEsteban O, Ciric R, Finc K et al. (2020). Analysis of task-based functional MRI data preprocessed with fMRIPrep. Nature Protocols, 15, 2186-2202. OA DOI\nEsteban O, Goncalves M, Markiewicz CJ, Ghosh SS, Poldrack RA (2020). Software Tool to Read, Represent, Manipulate, and Apply N-Dimensional Spatial Transforms. 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), 709-712. DOI\nLurie DJ, Kessler D, Bassett DS et al. (2020). Questions and controversies in the study of time-varying functional connectivity in resting fMRI. Network Neuroscience, 4, 30-69. DOI OSF\nMollon J, Mathias SR, Knowles EEM et al. (2020). Cognitive impairment from early to middle adulthood in patients with affective and nonaffective psychotic disorders. Psychological Medicine, 50, 48-57. OA DOI\nPoldrack RA, Huckins G, Varoquaux G (2020). Establishment of Best Practices for Evidence for Prediction. JAMA Psychiatry, 77, 534. OA DOI\nPoldrack RA, Whitaker K, Kennedy D (2020). Introduction to the special issue on reproducibility in neuroimaging. NeuroImage, 218, 116357. DOI\nThompson WH, Kastrati G, Finc K, Wright J, Shine JM, Poldrack RA (2020). Time‐varying nodal measures with temporal community structure: A cautionary note to avoid misinterpretation. Human Brain Mapping, 41, 2347-2356. OA DOI\nThompson WH, Nair R, Oya H, Esteban O, Shine JM, Petkov CI, Poldrack RA, Howard M, Adolphs R (2020). A data resource from concurrent intracranial stimulation and functional MRI of the human brain. Scientific Data, 7. OA DOI\nThompson WH, Wright J, Bissett PG, Poldrack RA (2020). Dataset decay and the problem of sequential analyses on open datasets. eLife, 9. OA DOI\nTozzi L, Staveland B, Holt-Gosselin B et al. (2020). The human connectome project for disordered emotional states: Protocol and rationale for a research domain criteria study of brain connectivity in young adult anxiety and depression. NeuroImage, 214, 116715. OA DOI\n\n\n2019\nAridan N, Malecek NJ, Poldrack RA, Schonberg T (2019). Neural correlates of effort-based valuation with prospective choices. NeuroImage, 185, 446-454. OA DOI Data\nBotvinik-Nezer R, Iwanir R, Holzmeister F, Huber J, Johannesson M, Kirchler M, Dreber A, Camerer CF, Poldrack RA, Schonberg T (2019). fMRI data of mixed gambles from the Neuroimaging Analysis Replication and Prediction Study. Scientific Data, 6. OA DOI Data\nEisenberg IW, Bissett PG, Zeynep Enkavi A, Li J, MacKinnon DP, Marsch LA, Poldrack RA (2019). Uncovering the structure of self-regulation through data-driven ontology discovery. Nature Communications, 10. OA DOI Data Code OSF\nEnkavi AZ, Eisenberg IW, Bissett PG, Mazza GL, MacKinnon DP, Marsch LA, Poldrack RA (2019). Reply to Friedman and Banich: Right measures for the research question. Proceedings of the National Academy of Sciences, 116, 24398-24399. OA DOI\nEnkavi AZ, Eisenberg IW, Bissett PG, Mazza GL, MacKinnon DP, Marsch LA, Poldrack RA (2019). Large-scale analysis of test–retest reliabilities of self-regulation measures. Proceedings of the National Academy of Sciences, 116, 5472-5477. OA DOI Data OSF\nEsteban O, Blair RW, Nielson DM, Varada JC, Marrett S, Thomas AG, Poldrack RA, Gorgolewski KJ (2019). Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines. Scientific Data, 6. OA DOI\nEsteban O, Markiewicz CJ, Blair RW et al. (2019). fMRIPrep: a robust preprocessing pipeline for functional MRI. Nature Methods, 16, 111-116. OA DOI\nKebets V, Holmes AJ, Orban C, Tang S, Li J, Sun N, Kong R, Poldrack RA, Yeo BT (2019). Somatosensory-Motor Dysconnectivity Spans Multiple Transdiagnostic Dimensions of Psychopathology. Biological Psychiatry, 86, 779-791. DOI\nKing M, Hernandez-Castillo CR, Poldrack RA, Ivry RB, Diedrichsen J (2019). Functional boundaries in the human cerebellum revealed by a multi-domain task battery. Nature Neuroscience, 22, 1371-1378. OA DOI Data\nLam M, Hill WD, Trampush JW et al. (2019). Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways. The American Journal of Human Genetics, 105, 334-350. OA DOI\nLi M, Han Y, Aburn MJ, Breakspear M, Poldrack RA, Shine JM, Lizier JT (2019). Transitions in information processing dynamics at the whole-brain network level are driven by alterations in neural gain. PLOS Computational Biology, 15, e1006957. OA DOI\nPoldrack RA (2019). The Costs of Reproducibility. Neuron, 101, 11-14. DOI\nPoldrack RA, Feingold F, Frank MJ et al. (2019). The Importance of Standards for Sharing of Computational Models and Data. Computational Brain &amp; Behavior, 2, 229-232. DOI\nPoldrack RA, Gorgolewski KJ, Varoquaux G (2019). Computational and Informatic Advances for Reproducible Data Analysis in Neuroimaging. Annual Review of Biomedical Data Science, 2.0. DOI\nReid AT, Headley DB, Mill RD et al. (2019). Advancing functional connectivity research from association to causation. Nature Neuroscience, 22, 1751-1760. OA DOI\nShine JM, Bell PT, Matar E, Poldrack RA, Lewis SJG, Halliday GM, O’Callaghan C (2019). Dopamine depletion alters macroscopic network dynamics in Parkinson’s disease. Brain, 142, 1024-1034. OA DOI\nShine JM, Breakspear M, Bell PT, Ehgoetz Martens KA, Shine R, Koyejo O, Sporns O, Poldrack RA (2019). Human cognition involves the dynamic integration of neural activity and neuromodulatory systems. Nature Neuroscience, 22, 289-296. DOI\nShine JM, Hearne LJ, Breakspear M, Hwang K, Müller EJ, Sporns O, Poldrack RA, Mattingley JB, Cocchi L (2019). The Low-Dimensional Neural Architecture of Cognitive Complexity Is Related to Activity in Medial Thalamic Nuclei. Neuron, 104, 849-855.e3. DOI\nSmeets PA, Dagher A, Hare TA, Kullmann S, van der Laan LN, Poldrack RA, Preissl H, Small D, Stice E, Veldhuizen MG (2019). Good practice in food-related neuroimaging. The American Journal of Clinical Nutrition, 109, 491-503. OA DOI\nVaroquaux G, Poldrack RA (2019). Predictive models avoid excessive reductionism in cognitive neuroimaging. Current Opinion in Neurobiology, 55, 1-6. DOI\nVerbruggen F, Aron AR, Band GP et al. (2019). A consensus guide to capturing the ability to inhibit actions and impulsive behaviors in the stop-signal task. eLife, 8. OA DOI\nYarkoni T, Markiewicz CJ, de la Vega A et al. (2019). PyBIDS: Python tools for BIDS datasets. J Open Source Softw, 4. OA DOI\nZuo X, Biswal BB, Poldrack RA (2019). Editorial: Reliability and Reproducibility in Functional Connectomics. Frontiers in Neuroscience, 13. DOI\n\n\n2018\nBakkour A, Botvinik-Nezer R, Cohen N, Hover AM, Poldrack RA, Schonberg T (2018). Spacing of cue-approach training leads to better maintenance of behavioral change. PLOS ONE, 13, e0201580. OA DOI OSF\nDavies G, Lam M, Harris SE et al. (2018). Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function. Nature Communications, 9. OA DOI\nDockès J, Wassermann D, Poldrack R, Suchanek F, Thirion B, Varoquaux G (2018). Text to Brain: Predicting the Spatial Distribution of Neuroimaging Observations from Text Reports. In Lecture Notes in Computer Science (p. 584-592). Springer International Publishing. DOI\nEisenberg IW, Bissett PG, Canning JR et al. (2018). Applying novel technologies and methods to inform the ontology of self-regulation. Behaviour Research and Therapy, 101, 46-57. OA DOI OSF\nEsteban O, Poldrack RA, Gorgolewski KJ (2018). Improving Out-of-Sample Prediction of Quality of MRIQC. In Lecture Notes in Computer Science (p. 190-199). Springer International Publishing. DOI\nGorgolewski KJ, Nichols T, Kennedy DN, Poline J, Poldrack RA (2018). Making replication prestigious. Behavioral and Brain Sciences, 41. DOI\nLam M, Trampush JW, Yu J et al. (2018). Multi-Trait Analysis of GWAS and Biological Insights Into Cognition: A Response to Hill (2018). Twin Research and Human Genetics, 21, 394-397. DOI OSF\nMathias SR, Knowles EE, Barrett J, Beetham T, Leach O, Buccheri S, Aberizk K, Blangero J, Poldrack RA, Glahn DC (2018). Deficits in visual working-memory capacity and general cognition in African Americans with psychosis. Schizophrenia Research, 193, 100-106. OA DOI\nNaselaris T, Bassett DS, Fletcher AK, Kording K, Kriegeskorte N, Nienborg H, Poldrack RA, Shohamy D, Kay K (2018). Cognitive Computational Neuroscience: A New Conference for an Emerging Discipline. Trends in Cognitive Sciences, 22, 365-367. OA DOI\nPoldrack RA (2018). The New Mind Readers: What Neuroimaging Can and Cannot Reveal about our Thoughts. Princeton, NJ: Princeton University Press.\nPoldrack RA, Monahan J, Imrey PB, Reyna V, Raichle ME, Faigman D, Buckholtz JW (2018). Predicting Violent Behavior: What Can Neuroscience Add?. Trends in Cognitive Sciences, 22, 111-123. OA DOI OSF\nPoldrack RA, Sandak R (2018). Introduction to This Special Issue: The Cognitive Neuroscience of Reading. In The Cognitive Neuroscience of Reading (p. 199-202). Routledge. DOI\nSavage JE, Jansen PR, Stringer S et al. (2018). Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence. Nature Genetics, 50, 912-919. OA DOI\nShine JM, Aburn MJ, Breakspear M, Poldrack RA (2018). The modulation of neural gain facilitates a transition between functional segregation and integration in the brain. eLife, 7. OA DOI\nShine JM, Poldrack RA (2018). Principles of dynamic network reconfiguration across diverse brain states. NeuroImage, 180, 396-405. DOI\nShine JM, van den Brink RL, Hernaus D, Nieuwenhuis S, Poldrack RA (2018). Catecholaminergic manipulation alters dynamic network topology across cognitive states. Network Neuroscience, 2, 381-396. DOI\nTansey W, Koyejo O, Poldrack RA, Scott JG (2018). False Discovery Rate Smoothing. Journal of the American Statistical Association, 113, 1156-1171. DOI\nVaroquaux G, Schwartz Y, Poldrack RA, Gauthier B, Bzdok D, Poline J, Thirion B (2018). Atlases of cognition with large-scale human brain mapping. PLOS Computational Biology, 14, e1006565. OA DOI\nWhite C, Poldrack RA (2018). Methods for fMRI analysis. In The Stevens’ Handbook of Experimental Psychology and Cognitive Neuroscience, Fourth Edition (Volume 5) (EJ Wagenmakers, Ed.) Wiley. DOI\nWimmer GE, Li JK, Gorgolewski KJ, Poldrack RA (2018). Reward Learning over Weeks Versus Minutes Increases the Neural Representation of Value in the Human Brain. The Journal of Neuroscience, 38, 7649-7666. OA DOI OSF\n\n\n2017\nAcikalin MY, Gorgolewski KJ, Poldrack RA (2017). A Coordinate-Based Meta-Analysis of Overlaps in Regional Specialization and Functional Connectivity across Subjective Value and Default Mode Networks. Frontiers in Neuroscience, 11. DOI\nBakkour A, Lewis-Peacock JA, Poldrack RA, Schonberg T (2017). Neural mechanisms of cue-approach training. NeuroImage, 151, 92-104. OA DOI\nEckert MA, Vaden KI, Maxwell AB et al. (2017). Common Brain Structure Findings Across Children with Varied Reading Disability Profiles. Scientific Reports, 7. OA DOI\nEsteban O, Birman D, Schaer M, Koyejo OO, Poldrack RA, Gorgolewski KJ (2017). MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites. PLOS ONE, 12, e0184661. OA DOI OSF\nGilron R, Rosenblatt J, Koyejo O, Poldrack RA, Mukamel R (2017). What’s in a pattern? Examining the type of signal multivariate analysis uncovers at the group level. NeuroImage, 146, 113-120. DOI\nGorgolewski KJ, Alfaro-Almagro F, Auer T et al. (2017). BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLOS Computational Biology, 13, e1005209. OA DOI\nGorgolewski KJ, Durnez J, Poldrack RA (2017). Preprocessed Consortium for Neuropsychiatric Phenomics dataset. F1000Research, 6, 1262. DOI\nKhanna R, Ghosh J, Poldrack RA, Koyejo O (2017). A Deflation Method for Structured Probabilistic PCA. Proceedings of the 2017 SIAM International Conference on Data Mining. DOI\nKiar G, Gorgolewski KJ, Kleissas D et al. (2017). Science in the cloud (SIC): A use case in MRI connectomics. Giga Science, 6. OA DOI\nLam M, Trampush JW, Yu J et al. (2017). Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets. Cell Reports, 21, 2597-2613. OA DOI\nLenartowicz A, Poldrack R (2017). Brain Imaging. In Encyclopedia of Behavioral Neuroscience, 2nd edition (p. 77-83). Elsevier. DOI\nMathias SR, Knowles EEM, Barrett J, Leach O, Buccheri S, Beetham T, Blangero J, Poldrack RA, Glahn DC (2017). The Processing-Speed Impairment in Psychosis Is More Than Just Accelerated Aging. Schizophrenia Bulletin, sbw168. OA DOI\nNichols TE, Das S, Eickhoff SB et al. (2017). Best practices in data analysis and sharing in neuroimaging using MRI. Nature Neuroscience, 20, 299-303. OA DOI\nPoldrack R (2017). Neuroscience: The risks of reading the brain. Nature, 541, 156-156. DOI\nPoldrack RA (2017). Precision Neuroscience: Dense Sampling of Individual Brains. Neuron, 95, 727-729. DOI\nPoldrack RA, Baker CI, Durnez J, Gorgolewski KJ, Matthews PM, Munafò MR, Nichols TE, Poline J, Vul E, Yarkoni T (2017). Scanning the horizon: towards transparent and reproducible neuroimaging research. Nature Reviews Neuroscience, 18, 115-126. OA DOI OSF\nPoldrack RA, Gorgolewski KJ (2017). OpenfMRI: Open sharing of task fMRI data. NeuroImage, 144, 259-261. OA DOI\nRubin TN, Koyejo O, Gorgolewski KJ, Jones MN, Poldrack RA, Yarkoni T (2017). Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition. PLOS Computational Biology, 13, e1005649. OA DOI\nShine JM, Kucyi A, Foster BL, Bickel S, Wang D, Liu H, Poldrack RA, Hsieh L, Hsiang JC, Parvizi J (2017). Distinct Patterns of Temporal and Directional Connectivity among Intrinsic Networks in the Human Brain. The Journal of Neuroscience, 37, 9667-9674. OA DOI\nTrampush JW, Yang MLZ, Yu J et al. (2017). GWAS meta-analysis reveals novel loci and genetic correlates for general cognitive function: a report from the COGENT consortium. Molecular Psychiatry, 22, 336-345. OA DOI\nXiao X, Dong Q, Gao J, Men W, Poldrack RA, Xue G (2017). Transformed Neural Pattern Reinstatement during Episodic Memory Retrieval. The Journal of Neuroscience, 37, 2986-2998. OA DOI\n\n\n2016\nBakkour A, Leuker C, Hover AM, Giles N, Poldrack RA, Schonberg T (2016). Mechanisms of Choice Behavior Shift Using Cue-approach Training. Frontiers in Psychology, 7. DOI\nEckert MA, Berninger VW, Hoeft F, Vaden KI (2016). A case of Bilateral Perisylvian Syndrome with reading disability. Cortex, 76, 121-124. OA DOI\nEisenberg I, Poldrack RA (2016). Task-set Selection in Probabilistic Environments: a Model of Task-set Inference. Proceedings of Cognitive Science Society.\nGorgolewski KJ, Auer T, Calhoun VD et al. (2016). The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Scientific Data, 3. OA DOI\nGorgolewski KJ, Poldrack RA (2016). A Practical Guide for Improving Transparency and Reproducibility in Neuroimaging Research. PLOS Biology, 14, e1002506. OA DOI\nGorgolewski KJ, Varoquaux G, Rivera G et al. (2016). NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain. NeuroImage, 124, 1242-1244. OA DOI\nHastings J, Frishkoff G, Smith B et al. (2016). Interdyscyplinarne perspektywy rozwoju, integracji i zastosowań ontologii poznawczych. AVANT. The Journal of the Philosophical-Interdisciplinary Vanguard, VII, 101-117. DOI\nHodgson K, Poldrack RA, Curran JE et al. (2016). Shared Genetic Factors Influence Head Motion During MRI and Body Mass Index. Cerebral Cortex. OA DOI\nPatterson TK, Lenartowicz A, Berkman ET, Ji D, Poldrack RA, Knowlton BJ (2016). Putting the brakes on the brakes: negative emotion disrupts cognitive control network functioning and alters subsequent stopping ability. Experimental Brain Research, 234, 3107-3118. OA DOI\nPoldrack R, Congdon E, Triplett W et al. (2016). A phenome-wide examination of neural and cognitive function. Scientific Data, 3. OA DOI Data\nPoldrack RA, Yarkoni T (2016). From Brain Maps to Cognitive Ontologies: Informatics and the Search for Mental Structure. Annual Review of Psychology, 67, 587-612. OA DOI\nShine J, Bissett P, Bell P, Koyejo O, Balsters J, Gorgolewski K, Moodie C, Poldrack R (2016). The Dynamics of Functional Brain Networks: Integrated Network States during Cognitive Task Performance. Neuron, 92, 544-554. OA DOI\nShine JM, Eisenberg I, Poldrack RA (2016). Computational specificity in the human brain. Behavioral and Brain Sciences, 39. DOI\nShine JM, Koyejo O, Poldrack RA (2016). Temporal metastates are associated with differential patterns of time-resolved connectivity, network topology, and attention. Proceedings of the National Academy of Sciences, 113, 9888-9891. OA DOI\nSochat VV, Eisenberg IW, Enkavi AZ, Li J, Bissett PG, Poldrack RA (2016). The Experiment Factory: Standardizing Behavioral Experiments. Frontiers in Psychology, 7. DOI\nWager TD, Atlas LY, Botvinick MM, Chang LJ, Coghill RC, Davis KD, Iannetti GD, Poldrack RA, Shackman AJ, Yarkoni T (2016). Pain in the ACC?. Proceedings of the National Academy of Sciences, 113. OA DOI\nWiener M, Sommer F, Ives Z, Poldrack R, Litt B (2016). Enabling an Open Data Ecosystem for the Neurosciences. Neuron, 92, 617-621. DOI\nWorthy DA, Davis T, Gorlick MA, Cooper JA, Bakkour A, Mumford JA, Poldrack RA, Todd Maddox W (2016). Neural correlates of state-based decision-making in younger and older adults. NeuroImage, 130, 13-23. OA DOI\n\n\n2015\nChen M, Jimura K, White CN, Maddox WT, Poldrack RA (2015). Multiple brain networks contribute to the acquisition of bias in perceptual decision-making. Frontiers in Neuroscience, 9. DOI\nGorgolewski KJ, Varoquaux G, Rivera G et al. (2015). NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain. Frontiers in Neuroinformatics, 9. DOI\nHelfinstein SM, Mumford JA, Poldrack RA (2015). If all your friends jumped off a bridge: The effect of others’ actions on engagement in and recommendation of risky behaviors. Journal of Experimental Psychology: General, 144, 12-17. DOI\nKhanna R, Ghosh J, Poldrack RA, Koyejo O (2015). Sparse submodular probabilistic PCA. Proceedings of the 18th International conference on Artificial Intelligence and Statistics (AISTATS) .\nLaumann T, Gordon E, Adeyemo B et al. (2015). Functional System and Areal Organization of a Highly Sampled Individual Human Brain. Neuron, 87, 657-670. OA DOI Data\nMumford JA, Poline J, Poldrack RA (2015). Orthogonalization of Regressors in fMRI Models. PLOS ONE, 10, e0126255. OA DOI\nPoldrack R (2015). Reverse Inference. In Brain Mapping (p. 647-650). Elsevier. DOI\nPoldrack R (2015). Introduction to Cognitive Neuroscience. In Brain Mapping (p. 259-260). Elsevier. DOI\nPoldrack RA (2015). Is “efficiency” a useful concept in cognitive neuroscience?. Developmental Cognitive Neuroscience, 11, 12-17. OA DOI Code\nPoldrack RA, Farah MJ (2015). Progress and challenges in probing the human brain. Nature, 526, 371-379. DOI\nPoldrack RA, Laumann TO, Koyejo O et al. (2015). Long-term neural and physiological phenotyping of a single human. Nature Communications, 6. OA DOI Data Code\nPoldrack RA, Poline J (2015). The publication and reproducibility challenges of shared data. Trends in Cognitive Sciences, 19, 59-61. DOI\nShine JM, Koyejo O, Bell PT, Gorgolewski KJ, Gilat M, Poldrack RA (2015). Estimation of dynamic functional connectivity using Multiplication of Temporal Derivatives. NeuroImage, 122, 399-407. DOI\nSochat VV, Gorgolewski KJ, Koyejo O, Durnez J, Poldrack RA (2015). Effects of thresholding on correlation-based image similarity metrics. Frontiers in Neuroscience, 9. DOI\n\n\n2014\nAron AR, Robbins TW, Poldrack RA (2014). Right inferior frontal cortex: addressing the rebuttals. Frontiers in Human Neuroscience, 8. DOI\nAron AR, Robbins TW, Poldrack RA (2014). Inhibition and the right inferior frontal cortex: one decade on. Trends in Cognitive Sciences, 18, 177-185. DOI\nCongdon E, Altshuler LL, Mumford JA et al. (2014). Neural activation during response inhibition in adult attention-deficit/hyperactivity disorder: Preliminary findings on the effects of medication and symptom severity. Psychiatry Research: Neuroimaging, 222, 17-28. OA DOI\nDavis T, LaRocque KF, Mumford JA, Norman KA, Wagner AD, Poldrack RA (2014). What do differences between multi-voxel and univariate analysis mean? How subject-, voxel-, and trial-level variance impact fMRI analysis. NeuroImage, 97, 271-283. OA DOI Code\nDavis T, Poldrack RA (2014). Quantifying the Internal Structure of Categories Using a Neural Typicality Measure. Cerebral Cortex, 24, 1720-1737. DOI\nDavis T, Xue G, Love BC, Preston AR, Poldrack RA (2014). Global Neural Pattern Similarity as a Common Basis for Categorization and Recognition Memory. The Journal of Neuroscience, 34, 7472-7484. OA DOI\nHastings J, Frishkoff GA, Smith B, Jensen M, Poldrack RA, Lomax J, Bandrowski A, Imam F, Turner JA, Martone ME (2014). Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies. Frontiers in Neuroinformatics, 8. DOI\nHelfinstein SM, Schonberg T, Congdon E, Karlsgodt KH, Mumford JA, Sabb FW, Cannon TD, London ED, Bilder RM, Poldrack RA (2014). Predicting risky choices from brain activity patterns. Proceedings of the National Academy of Sciences, 111, 2470-2475. OA DOI Data\nJimura K, Cazalis F, Stover ERS, Poldrack RA (2014). The neural basis of task switching changes with skill acquisition. Frontiers in Human Neuroscience, 8. DOI\nKoyejo O, Khanna R, Ghosh J, Poldrack RA (2014). On Prior Distributions and Approximate Inference for Structured Variables. Advances in Neural Information Processing Systems, 27.0.\nMumford JA, Davis T, Poldrack RA (2014). The impact of study design on pattern estimation for single-trial multivariate pattern analysis. NeuroImage, 103, 130-138. DOI\nPoldrack RA, Gorgolewski KJ (2014). Making big data open: data sharing in neuroimaging. Nature Neuroscience, 17, 1510-1517. DOI\nSchonberg T, Bakkour A, Hover AM, Mumford JA, Nagar L, Perez J, Poldrack RA (2014). Changing value through cued approach: an automatic mechanism of behavior change. Nature Neuroscience, 17, 625-630. OA DOI\nSchonberg T, Bakkour A, Hover AM, Mumford JA, Poldrack RA (2014). Influencing Food Choices by Training: Evidence for Modulation of Frontoparietal Control Signals. Journal of Cognitive Neuroscience, 26, 247-268. OA DOI\nThakkar KN, Congdon E, Poldrack RA, Sabb FW, London ED, Cannon TD, Bilder RM (2014). Women are more sensitive than men to prior trial events on the Stop‐signal task. British Journal of Psychology, 105, 254-272. OA DOI\nWagshal D, Knowlton BJ, Cohen JR, Poldrack RA, Bookheimer SY, Bilder RM, Asarnow RF (2014). Impaired automatization of a cognitive skill in first-degree relatives of patients with schizophrenia. Psychiatry Research, 215, 294-299. OA DOI\nWagshal D, Knowlton BJ, Suthana NA, Cohen JR, Poldrack RA, Bookheimer SY, Bilder RM, Asarnow RF (2014). Evidence for Corticostriatal Dysfunction During Cognitive Skill Learning in Adolescent Siblings of Patients With Childhood-Onset Schizophrenia. Schizophrenia Bulletin, 40, 1030-1039. OA DOI\nWhite CN, Congdon E, Mumford JA, Karlsgodt KH, Sabb FW, Freimer NB, London ED, Cannon TD, Bilder RM, Poldrack RA (2014). Decomposing Decision Components in the Stop-signal Task: A Model-based Approach to Individual Differences in Inhibitory Control. Journal of Cognitive Neuroscience, 26, 1601-1614. OA DOI Data\nWhite CN, Poldrack RA (2014). Decomposing bias in different types of simple decisions. Journal of Experimental Psychology: Learning, Memory, and Cognition, 40, 385-398. DOI Data Code\n\n\n2013\nBarch DM, Burgess GC, Harms MP et al. (2013). Function in the human connectome: Task-fMRI and individual differences in behavior. NeuroImage, 80, 169-189. OA DOI\nBrakewood B, Poldrack RA (2013). The ethics of secondary data analysis: Considering the application of Belmont principles to the sharing of neuroimaging data. NeuroImage, 82, 671-676. DOI\nCongdon E, Bato AA, Schonberg T, Mumford JA, Karlsgodt KH, Sabb FW, London ED, Cannon TD, Bilder RM, Poldrack RA (2013). Differences in neural activation as a function of risk-taking task parameters. Frontiers in Neuroscience, 7. DOI\nDavis T, Poldrack RA (2013). Measuring neural representations with fMRI: practices and pitfalls. Annals of the New York Academy of Sciences, 1296, 108-134. DOI\nFox CR, Poldrack RA (2013). Prospect theory and the brain. In Neuroeconomics: Decision Making and the Brain (2nd Edition) (P Glimcher et al. , Ed.) Elsevier.\nGalván A, Schonberg T, Mumford J, Kohno M, Poldrack RA, London ED (2013). Greater risk sensitivity of dorsolateral prefrontal cortex in young smokers than in nonsmokers. Psychopharmacology, 229, 345-355. OA DOI\nHsieh CJ, Sustik MA, Dhillon IS, Ravikumar R, Poldrack RA (2013). BIG & QUIC: Sparse Inverse Covariance Estimation for a Million Variables. Advances in Neural Information Processing Systems .\nKoyejo O, Patel P, Ghosh J, Poldrack RA (2013). Learning Predictive Cognitive Structure from fMRI Using Supervised Topic Models. 2013 International Workshop on Pattern Recognition in Neuroimaging, 9-12. DOI\nMalecek NJ, Poldrack RA (2013). Beyond dopamine: The noradrenergic system and mental effort. Behavioral and Brain Sciences, 36, 698-699. DOI\nPark M, Koyejo O, Ghosh J, Poldrack RA, Pillow JW (2013). Bayesian structure learning for functional neuroimaging. Sixteenth International Conference on Artificial Intelligence and Statistics (AIST ATS). .\nPoldrack RA, Barch DM, Mitchell JP, Wager TD, Wagner AD, Devlin JT, Cumba C, Koyejo O, Milham MP (2013). Toward open sharing of task-based fMRI data: the OpenfMRI project. Frontiers in Neuroinformatics, 7. DOI\nPoline J, Poldrack R (2013). Introduction to the special issue: Toward a new era of databasing and data sharing for neuroimaging. NeuroImage, 82, 645-646. DOI\nVan Essen DC, Smith SM, Barch DM, Behrens TE, Yacoub E, Ugurbil K (2013). The WU-Minn Human Connectome Project: An overview. NeuroImage, 80, 62-79. OA DOI\nWhite CN, Poldrack RA (2013). Using fMRI to Constrain Theories of Cognition. Perspectives on Psychological Science, 8, 79-83. DOI\nXue G, Dong Q, Chen C, Lu Z, Mumford JA, Poldrack RA (2013). Complementary Role of Frontoparietal Activity and Cortical Pattern Similarity in Successful Episodic Memory Encoding. Cerebral Cortex, 23, 1562-1571. OA DOI\n\n\n2012\nCongdon E, Mumford JA, Cohen JR, Galvan A, Canli T, Poldrack RA (2012). Measurement and Reliability of Response Inhibition. Frontiers in Psychology, 3. DOI\nCourtney KE, Arellano R, Barkley‐Levenson E, Gálvan A, Poldrack RA, MacKillop J, David Jentsch J, Ray LA (2012). The Relationship Between Measures of Impulsivity and Alcohol Misuse: An Integrative Structural Equation Modeling Approach. Alcoholism: Clinical and Experimental Research, 36, 923-931. OA DOI\nGhahremani DG, Lee B, Robertson CL et al. (2012). Striatal Dopamine D2/D3Receptors Mediate Response Inhibition and Related Activity in Frontostriatal Neural Circuitry in Humans. The Journal of Neuroscience, 32, 7316-7324. OA DOI\nHelfinstein SM, Poldrack RA (2012). The young and the reckless. Nature Neuroscience, 15, 803-805. DOI\nJimura K, Poldrack RA (2012). Analyses of regional-average activation and multivoxel pattern information tell complementary stories. Neuropsychologia, 50, 544-552. DOI\nMumford JA, Turner BO, Ashby FG, Poldrack RA (2012). Deconvolving BOLD activation in event-related designs for multivoxel pattern classification analyses. NeuroImage, 59, 2636-2643. OA DOI\nPoldrack RA (2012). The future of fMRI in cognitive neuroscience. NeuroImage, 62, 1216-1220. OA DOI\nPoldrack RA, Mumford JA, Schonberg T, Kalar D, Barman B, Yarkoni T (2012). Discovering Relations Between Mind, Brain, and Mental Disorders Using Topic Mapping. PLoS Computational Biology, 8, e1002707. OA DOI Code\nPoline J, Breeze JL, Ghosh S et al. (2012). Data sharing in neuroimaging research. Frontiers in Neuroinformatics, 6. DOI\nPoline J, Poldrack RA (2012). Frontiers in Brain Imaging Methods Grand Challenge. Frontiers in Neuroscience, 6. DOI\nSatpute AB, Mumford JA, Naliboff BD, Poldrack RA (2012). Human anterior and posterior hippocampus respond distinctly to state and trait anxiety. Emotion, 12, 58-68. DOI\nSchonberg T, Fox CR, Mumford JA, Congdon E, Trepel C, Poldrack RA (2012). Decreasing Ventromedial Prefrontal Cortex Activity During Sequential Risk-Taking: An fMRI Investigation of the Balloon Analog Risk Task. Frontiers in Neuroscience, 6. DOI Data\nTurner BO, Mumford JA, Poldrack RA, Ashby FG (2012). Spatiotemporal activity estimation for multivoxel pattern analysis with rapid event-related designs. NeuroImage, 62, 1429-1438. OA DOI\nWagshal D, Knowlton BJ, Cohen JR, Poldrack RA, Bookheimer SY, Bilder RM, Fernandez VG, Asarnow RF (2012). Deficits in probabilistic classification learning and liability for schizophrenia. Psychiatry Research, 200, 167-172. OA DOI\nWhite CN, Mumford JA, Poldrack RA (2012). Perceptual Criteria in the Human Brain. The Journal of Neuroscience, 32, 16716-16724. OA DOI\n\n\n2011\nCohen JR, Asarnow RF, Sabb FW, Bilder RM, Bookheimer SY, Knowlton BJ, Poldrack RA (2011). Decoding Continuous Variables from Neuroimaging Data: Basic and Clinical Applications. Frontiers in Neuroscience, 5. DOI\nGalván A, Poldrack RA, Baker CM, McGlennen KM, London ED (2011). Neural Correlates of Response Inhibition and Cigarette Smoking in Late Adolescence. Neuropsychopharmacology, 36, 970-978. OA DOI\nGhahremani DG, Tabibnia G, Monterosso J, Hellemann G, Poldrack RA, London ED (2011). Effect of Modafinil on Learning and Task-Related Brain Activity in Methamphetamine-Dependent and Healthy Individuals. Neuropsychopharmacology, 36, 950-959. OA DOI\nHübner NO, Assadian O, Poldrack R et al. (2011). Endowashers: an overlooked risk for possible post-endoscopic infections. GMS Krankenhhyg Interdiszip, 6, Doc13. OA DOI\nLenartowicz A, Verbruggen F, Logan GD, Poldrack RA (2011). Inhibition-related Activation in the Right Inferior Frontal Gyrus in the Absence of Inhibitory Cues. Journal of Cognitive Neuroscience, 23, 3388-3399. DOI\nPoldrack R (2011). Inferring Mental States from Neuroimaging Data: From Reverse Inference to Large-Scale Decoding. Neuron, 72, 692-697. OA DOI\nPoldrack RA, Kittur A, Kalar D, Miller E, Seppa C, Gil Y, Parker DS, Sabb FW, Bilder RM (2011). The Cognitive Atlas: Toward a Knowledge Foundation for Cognitive Neuroscience. Frontiers in Neuroinformatics, 5. DOI\nPoldrack RA, Mumford JA, Nichols TE (2011). Handbook of Functional MRI Data Analysis. Cambridge: Cambridge University Press.\nRizk-Jackson A, Stoffers D, Sheldon S, Kuperman J, Dale A, Goldstein J, Corey-Bloom J, Poldrack RA, Aron AR (2011). Evaluating imaging biomarkers for neurodegeneration in pre-symptomatic Huntington’s disease using machine learning techniques. NeuroImage, 56, 788-796. DOI\nSchonberg T, Fox CR, Poldrack RA (2011). Mind the gap: bridging economic and naturalistic risk-taking with cognitive neuroscience. Trends in Cognitive Sciences, 15, 11-19. OA DOI\nStern JM, Caporro M, Haneef Z, Yeh HJ, Buttinelli C, Lenartowicz A, Mumford JA, Parvizi J, Poldrack RA (2011). Functional imaging of sleep vertex sharp transients. Clinical Neurophysiology, 122, 1382-1386. OA DOI\nTabibnia G, Monterosso JR, Baicy K, Aron AR, Poldrack RA, Chakrapani S, Lee B, London ED (2011). Different Forms of Self-Control Share a Neurocognitive Substrate. The Journal of Neuroscience, 31, 4805-4810. OA DOI\nXue G, Mei L, Chen C, Lu Z, Poldrack R, Dong Q (2011). Spaced Learning Enhances Subsequent Recognition Memory by Reducing Neural Repetition Suppression. Journal of Cognitive Neuroscience, 23, 1624-1633. OA DOI\nYarkoni T, Poldrack RA, Nichols TE, Van Essen DC, Wager TD (2011). Large-scale automated synthesis of human functional neuroimaging data. Nature Methods, 8, 665-670. OA DOI\n\n\n2010\nCho S, Moody TD, Fernandino L, Mumford JA, Poldrack RA, Cannon TD, Knowlton BJ, Holyoak KJ (2010). Common and Dissociable Prefrontal Loci Associated with Component Mechanisms of Analogical Reasoning. Cerebral Cortex, 20, 524-533. DOI\nCohen J (2010). Decoding developmental differences and individual variability in response inhibition through predictive analyses across individuals. Frontiers in Human Neuroscience. DOI\nCohen JR, Asarnow RF, Sabb FW, Bilder RM, Bookheimer SY, Knowlton BJ, Poldrack RA (2010). A unique adolescent response to reward prediction errors. Nature Neuroscience, 13, 669-671. OA DOI\nCongdon E, Mumford JA, Cohen JR, Galvan A, Aron AR, Xue G, Miller E, Poldrack RA (2010). Engagement of large-scale networks is related to individual differences in inhibitory control. NeuroImage, 53, 653-663. OA DOI\nCongdon E, Poldrack RA, Freimer NB (2010). Neurocognitive Phenotypes and Genetic Dissection of Disorders of Brain and Behavior. Neuron, 68, 218-230. OA DOI\nCrone EA, Poldrack RA, Durston S (2010). Challenges and methods in developmental neuroimaging. Human Brain Mapping, 31, 835-837. OA DOI\nGhahremani DG, Monterosso J, Jentsch JD, Bilder RM, Poldrack RA (2010). Neural Components Underlying Behavioral Flexibility in Human Reversal Learning. Cerebral Cortex, 20, 1843-1852. OA DOI\nKenner NM, Mumford JA, Hommer RE, Skup M, Leibenluft E, Poldrack RA (2010). Inhibitory Motor Control in Response Stopping and Response Switching. Journal of Neuroscience, 30, 8512-8518. OA DOI\nKriegeskorte N, Lindquist MA, Nichols TE, Poldrack RA, Vul E (2010). Everything You Never Wanted to Know about Circular Analysis, but Were Afraid to Ask. Journal of Cerebral Blood Flow &amp; Metabolism, 30, 1551-1557. OA DOI\nLenartowicz A, Kalar DJ, Congdon E, Poldrack RA (2010). Towards an Ontology of Cognitive Control. Topics in Cognitive Science, 2, 678-692. DOI\nLenartowicz A, Poldrack R (2010). Brain Imaging. In Encyclopedia of Behavioral Neuroscience (p. 187-193). Elsevier. DOI\nMumford JA, Horvath S, Oldham MC, Langfelder P, Geschwind DH, Poldrack RA (2010). Detecting network modules in fMRI time series: A weighted network analysis approach. NeuroImage, 52, 1465-1476. OA DOI\nPoldrack RA (2010). Mapping Mental Function to Brain Structure: How Can Cognitive Neuroimaging Succeed?. Perspectives on Psychological Science, 5, 753-761. DOI\nPoldrack RA (2010). Interpreting developmental changes in neuroimaging signals. Human Brain Mapping, 31, 872-878. OA DOI\nPoldrack RA, Carr V, Foerde K (2010). Flexibility and generalization in memory systems. In Generalization of Knowledge: Multidisciplinary perspectives  (M Banich, D Caccamise , Ed.) New York, NY: Psychology Press..\nPoldrack RA, Mumford JA (2010). On the proper role of non-independent ROI analysis: A commentary on Vul and Kanwisher. In Foundational Issues in Human Brain Mapping (SJ Hanson, M Bunzl, Ed.) Cambridge, MA: MIT Press. DOI\nRamsey J, Hanson S, Hanson C, Halchenko Y, Poldrack R, Glymour C (2010). Six problems for causal inference from fMRI. NeuroImage, 49, 1545-1558. DOI\nScott-Van Zeeland AA, Abrahams BS, Alvarez-Retuerto AI et al. (2010). Altered Functional Connectivity in Frontal Lobe Circuits Is Associated with Variation in the Autism Risk Gene CNTNAP2. Science Translational Medicine, 2. OA DOI\nScott‐Van Zeeland AA, Dapretto M, Ghahremani DG, Poldrack RA, Bookheimer SY (2010). Reward processing in autism. Autism Research, 3, 53-67. OA DOI\nXue G, Dong Q, Chen C, Lu Z, Mumford JA, Poldrack RA (2010). Greater Neural Pattern Similarity Across Repetitions Is Associated with Better Memory. Science, 330, 97-101. OA DOI\nXue G, Mei L, Chen C, Lu Z, Poldrack RA, Dong Q (2010). Facilitating Memory for Novel Characters by Reducing Neural Repetition Suppression in the Left Fusiform Cortex. PLoS ONE, 5, e13204. OA DOI\nYarkoni T, Poldrack RA, Van Essen DC, Wager TD (2010). Cognitive neuroscience 2.0: building a cumulative science of human brain function. Trends in Cognitive Sciences, 14, 489-496. OA DOI\n\n\n2009\nAron A, Poldrack R, Wise S (2009). Cognition: Basal Ganglia Role. In Encyclopedia of Neuroscience (p. 1069-1077). Elsevier. DOI\nAron AR, Wise SP, Poldrack RA (2009). Role of the basal ganglia in cognition. In The New Encyclopedia of Neuroscience (Volume 2) (LR Squire, Ed.) Oxford, UK: Academic Press.\nBarch DM, Braver TS, Carter CS, Poldrack RA, Robbins TW (2009). CNTRICS Final Task Selection: Executive Control. Schizophrenia Bulletin, 35, 115-135. OA DOI\nBilder R, Sabb F, Cannon T, London E, Jentsch J, Parker DS, Poldrack R, Evans C, Freimer N (2009). Phenomics: the systematic study of phenotypes on a genome-wide scale. Neuroscience, 164, 30-42. OA DOI\nBilder RM, Poldrack RA, Parker DS, Reise SP, Jentsch JD, Cannon T, London E, Sabb FW, Foland L, Rizk-Jackson A, Kalar D, Brown N, Carstensen A, Freimer N (2009). Cognitive phenomics. In Handbook of Neuropsychology of Mental Disorders  (S Wood, N Allen, C Pantelis , Ed.) Cambridge: Cambridge University Press.\nBilder RM, Poldrack RA, Parker DS, Reise SP, Jentsch JD, Cannon T, London E, Sabb FW, Foland-Ross L, Rizk-Jackson A, Kalar D, Brown N, Carstensen A, Freimer N (2009). Cognitive phenomics. In The Neuropsychology of Mental Illness (p. 271-282). Cambridge University Press. DOI\nBilder RM, Sabb FW, Parker DS, Kalar D, Chu WW, Fox J, Freimer NB, Poldrack RA (2009). Cognitive ontologies for neuropsychiatric phenomics research. Cognitive Neuropsychiatry, 14, 419-450. OA DOI\nFoerde K, Poldrack R (2009). Procedural Learning in Humans. In Encyclopedia of Neuroscience (p. 1083-1091). Elsevier. DOI\nFox CR, Poldrack RA (2009). Prospect Theory and the Brain. In Neuroeconomics (p. 145-173). Elsevier. DOI\nGhahremani DG, Poldrack RA (2009). Neuroimaging and interactive memory systems. In Neuroimaging of Human MemoryLinking cognitive processes to neural systems (p. 77-88). Oxford University Press. DOI\nGlimcher P, Fehr E, Camerer C, Poldrack RA (Eds.) (2009). Neuroeconomics. San Diego: Academic Press. DOI\nGlimcher PW, Camerer CF, Fehr E, Poldrack RA (2009). Introduction. In Neuroeconomics (p. 1-12). Elsevier. DOI\nLee B, London ED, Poldrack RA et al. (2009). Striatal Dopamine D2/D3Receptor Availability Is Reduced in Methamphetamine Dependence and Is Linked to Impulsivity. The Journal of Neuroscience, 29, 14734-14740. OA DOI\nPoldrack RA, Halchenko YO, Hanson SJ (2009). Decoding the Large-Scale Structure of Brain Function by Classifying Mental States Across Individuals. Psychological Science, 20, 1364-1372. OA DOI\nPoldrack RA, Mumford JA (2009). Independence in ROI analysis: where is the voodoo?. Social Cognitive and Affective Neuroscience, 4, 208-213. OA DOI\nSabb F, Burggren A, Higier R et al. (2009). Challenges in phenotype definition in the whole-genome era: multivariate models of memory and intelligence. Neuroscience, 164, 88-107. OA DOI\nThompson PM, Miller MI, Poldrack RA, Nichols TE, Taylor JE, Worsley KJ, Ratnanather JT (2009). Special Issue on Mathematics in Brain Imaging. NeuroImage, 45, S1-S2. DOI\nVANHORN J (2009). Functional MRI at the crossroads. International Journal of Psychophysiology, 73, 3-9. OA DOI\n\n\n2008\nCOHEN JR, POLDRACK RA (2008). Automaticity in motor sequence learning does not impair response inhibition. Psychonomic Bulletin &amp; Review, 15, 108-115. DOI\nFoerde K, Poldrack RA, Knowlton BJ et al. (2008). Selective corticostriatal dysfunction in schizophrenia: Examination of motor and cognitive skill learning. Neuropsychology, 22, 100-109. DOI\nGluck MA, Poldrack RA, Kéri S (2008). The cognitive neuroscience of category learning. Neuroscience &amp; Biobehavioral Reviews, 32, 193-196. DOI\nKarlsgodt KH, van Erp TG, Poldrack RA, Bearden CE, Nuechterlein KH, Cannon TD (2008). Diffusion Tensor Imaging of the Superior Longitudinal Fasciculus and Working Memory in Recent-Onset Schizophrenia. Biological Psychiatry, 63, 512-518. DOI\nPoldrack RA (2008). The role of fMRI in Cognitive Neuroscience: where do we stand?. Current Opinion in Neurobiology, 18, 223-227. DOI\nPoldrack RA, Fletcher PC, Henson RN, Worsley KJ, Brett M, Nichols TE (2008). Guidelines for reporting an fMRI study. NeuroImage, 40, 409-414. OA DOI\nPoldrack RA, Foerde K (2008). Category learning and the memory systems debate. Neuroscience &amp; Biobehavioral Reviews, 32, 197-205. DOI\nPoldrack RA, Wagner AD (2008). The Interface Between Neuroscience and Psychological Science. Current Directions in Psychological Science, 17, 61-61. DOI\nRaizada RDS (2008). Challenge-driven attention: Interacting frontal and brainstem systems. Frontiers in Human Neuroscience, 1. DOI\nShattuck DW, Mirza M, Adisetiyo V, Hojatkashani C, Salamon G, Narr KL, Poldrack RA, Bilder RM, Toga AW (2008). Construction of a 3D probabilistic atlas of human cortical structures. NeuroImage, 39, 1064-1080. OA DOI\nTohka J, Foerde K, Aron AR, Tom SM, Toga AW, Poldrack RA (2008). Automatic independent component labeling for artifact removal in fMRI. NeuroImage, 39, 1227-1245. OA DOI\nXue G, Aron AR, Poldrack RA (2008). Common Neural Substrates for Inhibition of Spoken and Manual Responses. Cerebral Cortex, 18, 1923-1932. DOI Data\nXue G, Ghahremani DG, Poldrack RA (2008). Neural Substrates for Reversing Stimulus–Outcome and Stimulus–Response Associations. The Journal of Neuroscience, 28, 11196-11204. OA DOI\n\n\n2007\nAron AR, Behrens TE, Smith S, Frank MJ, Poldrack RA (2007). Triangulating a Cognitive Control Network Using Diffusion-Weighted Magnetic Resonance Imaging (MRI) and Functional MRI. The Journal of Neuroscience, 27, 3743-3752. OA DOI\nDevlin JT, Poldrack RA (2007). In praise of tedious anatomy. NeuroImage, 37, 1033-1041. OA DOI\nFoerde K, Poldrack RA, Knowlton BJ (2007). Secondary-task effects on classification learning. Memory &amp; Cognition, 35, 864-874. DOI\nMumford JA, Poldrack RA (2007). Modeling group fMRI data. Social Cognitive and Affective Neuroscience, 2, 251-257. OA DOI\nPoldrack RA (2007). Region of interest analysis for fMRI. Social Cognitive and Affective Neuroscience, 2, 67-70. OA DOI\nPoldrack RA, Devlin JT (2007). On the fundamental role of anatomy in functional imaging: Reply to commentaries on “In praise of tedious anatomy”. NeuroImage, 37, 1066-1068. DOI\nRaizada RD, Poldrack RA (2007). Selective Amplification of Stimulus Differences during Categorical Processing of Speech. Neuron, 56, 726-740. DOI\nThermenos HW, Seidman LJ, Poldrack RA, Peace NK, Koch JK, Faraone SV, Tsuang MT (2007). Elaborative Verbal Encoding and Altered Anterior Parahippocampal Activation in Adolescents and Young Adults at Genetic Risk for Schizophrenia Using fMRI. Biological Psychiatry, 61, 564-574. DOI\nTom SM, Fox CR, Trepel C, Poldrack RA (2007). The Neural Basis of Loss Aversion in Decision-Making Under Risk. Science, 315, 515-518. DOI Data\nXue G, Poldrack RA (2007). The Neural Substrates of Visual Perceptual Learning of Words: Implications for the Visual Word Form Area Hypothesis. Journal of Cognitive Neuroscience, 19, 1643-1655. DOI\n\n\n2006\nAron AR, Gluck MA, Poldrack RA (2006). Long-term test–retest reliability of functional MRI in a classification learning task. NeuroImage, 29, 1000-1006. OA DOI Data\nAron AR, Poldrack RA (2006). Cortical and Subcortical Contributions to Stop Signal Response Inhibition: Role of the Subthalamic Nucleus. The Journal of Neuroscience, 26, 2424-2433. OA DOI\nFoerde K, Knowlton BJ, Poldrack RA (2006). Modulation of competing memory systems by distraction. Proceedings of the National Academy of Sciences, 103, 11778-11783. OA DOI Data\nPOLDRACK R (2006). Can cognitive processes be inferred from neuroimaging data?. Trends in Cognitive Sciences, 10, 59-63. DOI\nPoldrack RA, Willingham DB (2006). Functional neuroimaging of skill learning. In Handbook of Neuroimaging of Cognition, 2nd Edition  (R Cabeza, A Kingstone, Ed.) Cambridge, MA: MIT Press.\nRodriguez PF, Aron A, Poldrack R (2006). Ventral–striatal/nucleus–accumbens sensitivity to prediction errors during classification learning. Human Brain Mapping, 27, 306-313. OA DOI\nSEIDMAN L, THERMENOS H, POLDRACK R, PEACE N, KOCH J, FARAONE S, TSUANG M (2006). Altered brain activation in dorsolateral prefrontal cortex in adolescents and young adults at genetic risk for schizophrenia: An fMRI study of working memory. Schizophrenia Research, 85, 58-72. DOI\nSegonne F, Liu A, Poldrack R, Golland P, Fischl B (2006). Shape-based Discrimination and Classification of Cortical Surfaces. 18th International Conference on Pattern Recognition (ICPR’06), 445-448. DOI\nThermenos HW, Seidman LJ, Poldrack RA, Peace NK, Koch JK, Faraone SV, Tsuang MT (2006). RETRACTED: Elaborative Verbal Encoding and Altered Anterior Parahippocampal Activation in Adolescents and Young Adults at Genetic Risk for Schizophrenia Using fMRI. Biol Psychiatry. DOI\n\n\n2005\nAron AR, Poldrack RA (2005). The Cognitive Neuroscience of Response Inhibition: Relevance for Genetic Research in Attention-Deficit/Hyperactivity Disorder. Biological Psychiatry, 57, 1285-1292. DOI\nBadre D, Poldrack RA, Paré-Blagoev EJ, Insler RZ, Wagner AD (2005). Dissociable Controlled Retrieval and Generalized Selection Mechanisms in Ventrolateral Prefrontal Cortex. Neuron, 47, 907-918. DOI\nGoldstein JM, Jerram M, Poldrack R, Ahern T, Kennedy DN, Seidman LJ, Makris N (2005). Hormonal Cycle Modulates Arousal Circuitry in Women Using Functional Magnetic Resonance Imaging. The Journal of Neuroscience, 25, 9309-9316. OA DOI\nGoldstein JM, Jerram M, Poldrack R, Anagnoson R, Breiter HC, Makris N, Goodman JM, Tsuang MT, Seidman LJ (2005). Sex differences in prefrontal cortical brain activity during fMRI of auditory verbal working memory. Neuropsychology, 19, 509-519. DOI\nKatzir T, Misra M, Poldrack RA (2005). Imaging phonology without print: Assessing the neural correlates of phonemic awareness using fMRI. NeuroImage, 27, 106-115. DOI\nPoldrack RA, Sabb FW, Foerde K, Tom SM, Asarnow RF, Bookheimer SY, Knowlton BJ (2005). The Neural Correlates of Motor Skill Automaticity. The Journal of Neuroscience, 25, 5356-5364. OA DOI\nStone WS, Thermenos HW, Tarbox SI, Poldrack RA, Seidman LJ (2005). Medial temporal and prefrontal lobe activation during verbal encoding following glucose ingestion in schizophrenia: A pilot fMRI study. Neurobiology of Learning and Memory, 83, 54-64. DOI\nThermenos HW, Goldstein JM, Buka SL, Poldrack RA, Koch JK, Tsuang MT, Seidman LJ (2005). The effect of working memory performance on functional MRI in schizophrenia. Schizophrenia Research, 74, 179-194. DOI\nTrepel C, Fox CR, Poldrack RA (2005). Prospect theory on the brain? Toward a cognitive neuroscience of decision under risk. Cognitive Brain Research, 23, 34-50. DOI\nValera EM, Faraone SV, Biederman J, Poldrack RA, Seidman LJ (2005). Functional neuroanatomy of working memory in adults with attention-deficit/hyperactivity disorder. Biological Psychiatry, 57, 439-447. DOI\n\n\n2004\nAron AR, Robbins TW, Poldrack RA (2004). Inhibition and the right inferior frontal cortex. Trends in Cognitive Sciences, 8, 170-177. DOI\nAron AR, Shohamy D, Clark J, Myers C, Gluck MA, Poldrack RA (2004). Human Midbrain Sensitivity to Cognitive Feedback and Uncertainty During Classification Learning. Journal of Neurophysiology, 92, 1144-1152. DOI\nMisra M, Katzir T, Wolf M, Poldrack RA (2004). Neural Systems for Rapid Automatized Naming in Skilled Readers: Unraveling the RAN-Reading Relationship. Scientific Studies of Reading, 8, 241-256. DOI\nPoldrack RA, Rodriguez P (2004). How do memory systems interact? Evidence from human classification learning. Neurobiology of Learning and Memory, 82, 324-332. DOI\nPoldrack RA, Sandak R (2004). Introduction to This Special Issue: The Cognitive Neuroscience of Reading. Scientific Studies of Reading, 8, 199-202. DOI\nPoldrack RA, Wagner AD (2004). What Can Neuroimaging Tell Us About the Mind?. Current Directions in Psychological Science, 13, 177-181. DOI\nShohamy D (2004). Cortico-striatal contributions to feedback-based learning: converging data from neuroimaging and neuropsychology. Brain, 127, 851-859. DOI\nThermenos HW, Seidman LJ, Breiter H, Goldstein JM, Goodman JM, Poldrack R, Faraone SV, Tsuang MT (2004). Functional magnetic resonance imaging during auditory verbal working memory in nonpsychotic relatives of persons with schizophrenia: a pilot study. Biological Psychiatry, 55, 490-500. DOI\nThompson PM, Miller MI, Ratnanather JT, Poldrack RA, Nichols TE (2004). Preface to the special issue. NeuroImage, 23, S1. DOI\n\n\n2003\nBoas DA, Strangman G, Culver JP, Hoge RD, Jasdzewski G, Poldrack RA, Rosen BR, Mandeville JB (2003). Can the cerebral metabolic rate of oxygen be estimated with near-infrared spectroscopy?. Physics in Medicine and Biology, 48, 2405-2418. DOI\nJasdzewski G, Strangman G, Wagner J, Kwong K, Poldrack R, Boas D (2003). Differences in the hemodynamic response to event-related motor and visual paradigms as measured by near-infrared spectroscopy. NeuroImage, 20, 479-488. DOI\nMisra M, Katzir T, Wolf M, Poldrack RA (2003). Neural systems for rapid automatized naming identified using fMRI. Scientific Studies of Reading, 8.0.\nPoldrack RA, Packard MG (2003). Competition among multiple memory systems: converging evidence from animal and human brain studies. Neuropsychologia, 41, 245-251. DOI\nPoldrack RA, Rodriguez P (2003). Sequence Learning. Neuron, 37, 891-893. DOI\nPoldrack RA, Sandak R (2003). Introduction to special issue: The cognitive neuroscience of reading. Scientific Studies of Reading, 8.0.\nSperling R, Chua E, Cocchiarella A, Rand-Giovannetti E, Poldrack R, Schacter DL, Albert M (2003). Putting names to faces:. NeuroImage, 20, 1400-1410. OA DOI\nTemple E, Deutsch GK, Poldrack RA, Miller SL, Tallal P, Merzenich MM, Gabrieli JDE (2003). Neural deficits in children with dyslexia ameliorated by behavioral remediation: Evidence from functional MRI. Proceedings of the National Academy of Sciences, 100, 2860-2865. OA DOI\n\n\n2002\nGolby A, Poldrack R, Illes J, Chen D, Desmond J, Gabrieli J (2002). Memory Lateralization in Medial Temporal Lobe Epilepsy Assessed by Functional MRI. Epilepsia, 43, 855-863. DOI\nPoldrack RA (2002). Neural Systems for Perceptual Skill Learning. Behavioral and Cognitive Neuroscience Reviews, 1, 76-83. DOI\nPoldrack RA, Paré-Blagoev EJ, Grant PE (2002). Pediatric Functional Magnetic Resonance Imaging: Progress and Challenges. Topics in Magnetic Resonance Imaging, 13, 61-70. DOI\n\n\n2001\nGolby AJ (2001). Material-specific lateralization in the medial temporal lobe and prefrontal cortex during memory encoding. Brain, 124, 1841-1854. DOI\nPoldrack RA (2001). A Structural Basis for Developmental Dyslexia:Evidence from Diffusion Tensor Imaging. In Dyslexia, Fluency and the Brain (M Wolf, Ed.) York Press: Timonium, MD.\nPoldrack RA, Clark J, Paré-Blagoev EJ, Shohamy D, Creso Moyano J, Myers C, Gluck MA (2001). Interactive memory systems in the human brain. Nature, 414, 546-550. DOI Data\nPoldrack RA, Gabrieli JDE (2001). Characterizing the neural mechanisms of skill learning and repetition priming. Brain, 124, 67-82. DOI\nPoldrack RA, Temple E, Protopapas A, Nagarajan S, Tallal P, Merzenich M, Gabrieli JDE (2001). Relations between the Neural Bases of Dynamic Auditory Processing and Phonological Processing: Evidence from fMRI. Journal of Cognitive Neuroscience, 13, 687-697. DOI\nTemple E, Poldrack RA, Salidis J, Deutsch GK, Tallal P, Merzenich MM, Gabrieli JDE (2001). Disrupted neural responses to phonological and orthographic processing in dyslexic children: an fMRI study. Neuroreport, 12, 299-307. DOI\nVuilleumier P, Sagiv N, Hazeltine E, Poldrack RA, Swick D, Rafal RD, Gabrieli JDE (2001). Neural fate of seen and unseen faces in visuospatial neglect: A combined event-related functional MRI and event-related potential study. Proceedings of the National Academy of Sciences, 98, 3495-3500. OA DOI\nWagner AD, Paré-Blagoev E, Clark J, Poldrack RA (2001). Recovering Meaning. Neuron, 31, 329-338. DOI\n\n\n2000\nHazeltine E, Poldrack R, Gabrieli JDE (2000). Neural Activation During Response Competition. Journal of Cognitive Neuroscience, 12, 118-129. DOI\nKlingberg T, Hedehus M, Temple E, Salz T, Gabrieli JD, Moseley ME, Poldrack RA (2000). Microstructure of Temporo-Parietal White Matter as a Basis for Reading Ability. Neuron, 25, 493-500. DOI\nPoldrack RA (2000). Imaging Brain Plasticity: Conceptual and Methodological Issues— A Theoretical Review. NeuroImage, 12, 1-13. DOI\nSeger CA, Poldrack RA, Prabhakaran V, Zhao M, Glover GH, Gabrieli JD (2000). Hemispheric asymmetries and individual differences in visual concept learning as measured by functional MRI. Neuropsychologia, 38, 1316-1324. DOI\nSeger CA, Prabhakaran V, Poldrack RA, Gabrieli JDE (2000). Neural activity differs between explicit and implicit learning of artificial grammar strings: An fMRI study. Psychobiology, 28, 283-292. DOI\nTemple E, Poldrack RA, Protopapas A, Nagarajan S, Salz T, Tallal P, Merzenich MM, Gabrieli JDE (2000). Disruption of the neural response to rapid acoustic stimuli in dyslexia: Evidence from functional MRI. Proceedings of the National Academy of Sciences, 97, 13907-13912. OA DOI\n\n\n1999\nDemb JB, Poldrack RA, Gabrieli JDE (1999). Functional neuroimaging of word processing in normal and dyslexic readers. In Converging Methods for Understanding Reading and Dyslexia  (R Klein, P. McMullen, Ed.) Cambridge, MA: MIT Press.\nIlles J, Francis WS, Desmond JE, Gabrieli JD, Glover GH, Poldrack R, Lee CJ, Wagner AD (1999). Convergent Cortical Representation of Semantic Processing in Bilinguals. Brain and Language, 70, 347-363. DOI\nPoldrack RA, Prabhakaran V, Seger CA, Gabrieli JD (1999). Striatal activation during acquisition of a cognitive skill. Neuropsychology, 13, 564-74. DOI\nPoldrack RA, Prabhakaran V, Seger CA, Gabrieli JDE (1999). Striatal activation during acquisition of a cognitive skill. Neuropsychology, 13, 564-574. DOI\nPoldrack RA, Selco SL, Field JE, Cohen NJ (1999). The relationship between skill learning and repetition priming: Experimental and computational analyses. Journal of Experimental Psychology: Learning, Memory, and Cognition, 25, 208-235. DOI\nPoldrack RA, Selco SL, Field JE, Cohen NJ (1999). The relationship between skill learning and repetition priming: experimental and computational analyses. J Exp Psychol Learn Mem Cogn, 25, 208-35. DOI\nPoldrack RA, Wagner AD, Prull MW, Desmond JE, Glover GH, Gabrieli JD (1999). Functional Specialization for Semantic and Phonological Processing in the Left Inferior Prefrontal Cortex. NeuroImage, 10, 15-35. DOI\n\n\n1998\nGabrieli JD, Brewer JB, Poldrack RA (1998). Images of Medial Temporal Lobe Functions in Human Learning and Memory. Neurobiology of Learning and Memory, 70, 275-283. DOI\nGabrieli JDE, Poldrack RA, Desmond JE (1998). The role of left prefrontal cortex in language and memory. Proceedings of the National Academy of Sciences, 95, 906-913. OA DOI\nPoldrack R (1998). The neural basis of visual skill learning: an fMRI study of mirror reading. Cerebral Cortex, 8, 1-10. DOI\nPoldrack RA, Gabrieli JD (1998). Memory and the Brain: What’s Right and What’s Left?. Cell, 93, 1091-1093. DOI\nPoldrack RA, Logan GD (1998). What is the mechanism for fluency in successive recognition?. Acta Psychologica, 98, 167-181. DOI\nWagner AD, Poldrack RA, Eldridge LL, Desmond JE, Glover GH, E. Gabrieli JD (1998). Material-specific lateralization of prefrontal activation during episodic encoding and retrieval. NeuroReport, 9, 3711-3717. DOI\n\n\n1997\nCohen NJ, Poldrack RA, Eichenbaum H (1997). Memory for Items and Memory for Relations in the Procedural/Declarative Memory Framework. Memory, 5, 131-178. DOI\nGabrieli JD, Keane MM, Zarella MM, Poldrack RA (1997). Preservation of Implicit Memory for New Associations in Global Amnesia. Psychological Science, 8, 326-329. DOI\nPoldrack RA, Cohen NJ (1997). Priming of new associations in reading time: What is learned?. Psychonomic Bulletin &amp; Review, 4, 398-402. DOI\nPoldrack RA, Gabrieli JDE (1997). Functional Anatomy of Long-Term Memory. Journal of Clinical Neurophysiology, 14, 294-310. DOI\nPoldrack RA, Logan GD (1997). Fluency and response speed in recognition judgments. Memory &amp; Cognition, 25, 1-10. DOI\n\n\n1996\nPoldrack RA (1996). On testing for stochastic dissociations. Psychonomic Bulletin &amp; Review, 3, 434-448. DOI\n\n\n1994\nPoldrack RA, Cohen NJ (1994). On the representational/computational properties of multiple memory systems. Behavioral and Brain Sciences, 17, 416-417. DOI\n   \nUpdated: 2025-01-24 - Publication list created using autocv",
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+    "text": "Our lab endeavors to make all of our research code openly available. None of this code is guaranteed to work outside of our local environment, and most of it is not built for portability, but if you use it and find any bugs, please let us know. Unless otherwise noted, all code is released under the unrestrictive MIT License\nFor additional information on our organized software development projects, see Informatics projects.",
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+    "text": "Github repositories\nThe Poldrack lab manages several GitHub organizations:\n\nPoldrack Lab at Stanford\nOpenNeuro.org\nThe Experiment Factory\nThe Cognitive Atlas\n\nWe are currently or have been heavily involved in the following organizations:\n\nBrain Imaging Data Structure\nNeuroVault\nNiPreps\nTemplateFlow\n\nWe also contribute to greater and lesser extents to many other projects, including:\n\nThe Nipy community\nNipype\nNilearn\n\nFor individual members’ GitHub profiles, see Lab members.",
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+    "text": "Software for tasks used in lab publications\n\nMany of our recent tasks are housed in the Experiment Factory\nmixed gambles task (demo and scanning script from task used in Tom et al., 2007)",
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+    "text": "Task software used in Consortium for Neuropsychiatric Phenomics (CNP)\n\n​Users of these tasks should include the following acknowledgment in any resulting publications: Development of this software was supported by the Consortium for Neuropsychiatric Phenomics (NIH Roadmap for Medical Research grants UL1-DE019580, RL1MH083269, RL1DA024853, PL1MH083271.\nBalloon Analog Risk task (demo and scanning script)\nBreath holding task\nPaired Associate Memory\nSpatial working memory capacity\nStop Signal task\nTask switching",
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+    "text": "Data/code/OSF pages for published papers\n\n\n2024\nMumford JA, Bissett PG, Jones HM, Shim S, Rios JAH, Poldrack RA (2024). The response time paradox in functional magnetic resonance imaging analyses. Nature Human Behaviour, 8, 349-360. DOI Data Code\n\n\n2023\nBissett PG, Jones HM, Hagen MP, Bui TT, Li JK, Rios JAH, Mumford JA, Shine JM, Poldrack RA (2023). A dual-task approach to inform the taxonomy of inhibition-related processes. Journal of Experimental Psychology: Human Perception and Performance, 49, 277-289. OA DOI Data Code OSF\nJaffe PI, Poldrack RA, Schafer RJ, Bissett PG (2023). Modelling human behaviour in cognitive tasks with latent dynamical systems. Nature Human Behaviour, 7, 986-1000. DOI Data Code\nThomas AW, Ré C, Poldrack RA (2023). Benchmarking explanation methods for mental state decoding with deep learning models. NeuroImage, 273, 120109. OA DOI Code\n\n\n2021\nBeam E, Potts C, Poldrack RA, Etkin A (2021). A data-driven framework for mapping domains of human neurobiology. Nature Neuroscience, 24, 1733-1744. OA DOI Data Code\nBissett PG, Hagen MP, Jones HM, Poldrack RA (2021). Design issues and solutions for stop-signal data from the Adolescent Brain Cognitive Development (ABCD) study. eLife, 10. OA DOI Code\nBissett PG, Jones HM, Poldrack RA, Logan GD (2021). Severe violations of independence in response inhibition tasks. Science Advances, 7. OA DOI Data Code\nMazza GL, Smyth HL, Bissett PG et al. (2021). Correlation Database of 60 Cross-Disciplinary Surveys and Cognitive Tasks Assessing Self-Regulation. Journal of Personality Assessment, 103, 238-245. OA DOI Data\n\n\n2020\nBielczyk NZ, Ando A, Badhwar A et al. (2020). Effective Self-Management for Early Career Researchers in the Natural and Life Sciences. Neuron, 106, 212-217. OA DOI OSF\nLurie DJ, Kessler D, Bassett DS et al. (2020). Questions and controversies in the study of time-varying functional connectivity in resting fMRI. Network Neuroscience, 4, 30-69. DOI OSF\n\n\n2019\nAridan N, Malecek NJ, Poldrack RA, Schonberg T (2019). Neural correlates of effort-based valuation with prospective choices. NeuroImage, 185, 446-454. OA DOI Data\nBotvinik-Nezer R, Iwanir R, Holzmeister F, Huber J, Johannesson M, Kirchler M, Dreber A, Camerer CF, Poldrack RA, Schonberg T (2019). fMRI data of mixed gambles from the Neuroimaging Analysis Replication and Prediction Study. Scientific Data, 6. OA DOI Data\nEisenberg IW, Bissett PG, Zeynep Enkavi A, Li J, MacKinnon DP, Marsch LA, Poldrack RA (2019). Uncovering the structure of self-regulation through data-driven ontology discovery. Nature Communications, 10. OA DOI Data Code OSF\nEnkavi AZ, Eisenberg IW, Bissett PG, Mazza GL, MacKinnon DP, Marsch LA, Poldrack RA (2019). Large-scale analysis of test–retest reliabilities of self-regulation measures. Proceedings of the National Academy of Sciences, 116, 5472-5477. OA DOI Data OSF\nKing M, Hernandez-Castillo CR, Poldrack RA, Ivry RB, Diedrichsen J (2019). Functional boundaries in the human cerebellum revealed by a multi-domain task battery. Nature Neuroscience, 22, 1371-1378. OA DOI Data\n\n\n2018\nBakkour A, Botvinik-Nezer R, Cohen N, Hover AM, Poldrack RA, Schonberg T (2018). Spacing of cue-approach training leads to better maintenance of behavioral change. PLOS ONE, 13, e0201580. OA DOI OSF\nEisenberg IW, Bissett PG, Canning JR et al. (2018). Applying novel technologies and methods to inform the ontology of self-regulation. Behaviour Research and Therapy, 101, 46-57. OA DOI OSF\nLam M, Trampush JW, Yu J et al. (2018). Multi-Trait Analysis of GWAS and Biological Insights Into Cognition: A Response to Hill (2018). Twin Research and Human Genetics, 21, 394-397. DOI OSF\nPoldrack RA, Monahan J, Imrey PB, Reyna V, Raichle ME, Faigman D, Buckholtz JW (2018). Predicting Violent Behavior: What Can Neuroscience Add?. Trends in Cognitive Sciences, 22, 111-123. OA DOI OSF\nWimmer GE, Li JK, Gorgolewski KJ, Poldrack RA (2018). Reward Learning over Weeks Versus Minutes Increases the Neural Representation of Value in the Human Brain. The Journal of Neuroscience, 38, 7649-7666. OA DOI OSF\n\n\n2017\nEsteban O, Birman D, Schaer M, Koyejo OO, Poldrack RA, Gorgolewski KJ (2017). MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites. PLOS ONE, 12, e0184661. OA DOI OSF\nPoldrack RA, Baker CI, Durnez J, Gorgolewski KJ, Matthews PM, Munafò MR, Nichols TE, Poline J, Vul E, Yarkoni T (2017). Scanning the horizon: towards transparent and reproducible neuroimaging research. Nature Reviews Neuroscience, 18, 115-126. OA DOI OSF\n\n\n2016\nPoldrack R, Congdon E, Triplett W et al. (2016). A phenome-wide examination of neural and cognitive function. Scientific Data, 3. OA DOI Data\n\n\n2015\nLaumann T, Gordon E, Adeyemo B et al. (2015). Functional System and Areal Organization of a Highly Sampled Individual Human Brain. Neuron, 87, 657-670. OA DOI Data\nPoldrack RA (2015). Is “efficiency” a useful concept in cognitive neuroscience?. Developmental Cognitive Neuroscience, 11, 12-17. OA DOI Code\nPoldrack RA, Laumann TO, Koyejo O et al. (2015). Long-term neural and physiological phenotyping of a single human. Nature Communications, 6. OA DOI Data Code\n\n\n2014\nDavis T, LaRocque KF, Mumford JA, Norman KA, Wagner AD, Poldrack RA (2014). What do differences between multi-voxel and univariate analysis mean? How subject-, voxel-, and trial-level variance impact fMRI analysis. NeuroImage, 97, 271-283. OA DOI Code\nHelfinstein SM, Schonberg T, Congdon E, Karlsgodt KH, Mumford JA, Sabb FW, Cannon TD, London ED, Bilder RM, Poldrack RA (2014). Predicting risky choices from brain activity patterns. Proceedings of the National Academy of Sciences, 111, 2470-2475. OA DOI Data\nWhite CN, Congdon E, Mumford JA, Karlsgodt KH, Sabb FW, Freimer NB, London ED, Cannon TD, Bilder RM, Poldrack RA (2014). Decomposing Decision Components in the Stop-signal Task: A Model-based Approach to Individual Differences in Inhibitory Control. Journal of Cognitive Neuroscience, 26, 1601-1614. OA DOI Data\nWhite CN, Poldrack RA (2014). Decomposing bias in different types of simple decisions. Journal of Experimental Psychology: Learning, Memory, and Cognition, 40, 385-398. DOI Data Code\n\n\n2012\nPoldrack RA, Mumford JA, Schonberg T, Kalar D, Barman B, Yarkoni T (2012). Discovering Relations Between Mind, Brain, and Mental Disorders Using Topic Mapping. PLoS Computational Biology, 8, e1002707. OA DOI Code\nSchonberg T, Fox CR, Mumford JA, Congdon E, Trepel C, Poldrack RA (2012). Decreasing Ventromedial Prefrontal Cortex Activity During Sequential Risk-Taking: An fMRI Investigation of the Balloon Analog Risk Task. Frontiers in Neuroscience, 6. DOI Data\n\n\n2008\nXue G, Aron AR, Poldrack RA (2008). Common Neural Substrates for Inhibition of Spoken and Manual Responses. Cerebral Cortex, 18, 1923-1932. DOI Data\n\n\n2007\nTom SM, Fox CR, Trepel C, Poldrack RA (2007). The Neural Basis of Loss Aversion in Decision-Making Under Risk. Science, 315, 515-518. DOI Data\n\n\n2006\nAron AR, Gluck MA, Poldrack RA (2006). Long-term test–retest reliability of functional MRI in a classification learning task. NeuroImage, 29, 1000-1006. OA DOI Data\nFoerde K, Knowlton BJ, Poldrack RA (2006). Modulation of competing memory systems by distraction. Proceedings of the National Academy of Sciences, 103, 11778-11783. OA DOI Data\n\n\n2001\nPoldrack RA, Clark J, Paré-Blagoev EJ, Shohamy D, Creso Moyano J, Myers C, Gluck MA (2001). Interactive memory systems in the human brain. Nature, 414, 546-550. DOI Data",
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+    "text": "Pre-registration is a mechanism in which one places a detailed description of a planned study into a repository where it is timestamped and will remain immutable.\nFor more background information, see here.\n\nAll empirical projects will be pre-registered, preferably using the Open Science Framework.\n\nPilot studies need not be pre-registered, but should then be subject to a pre-registered replication or extension.\n\nPre-registration should include as much detail as possible. Pre-registration must include at minimum:\n\nSample size (with justification)\nInclusion/exclusion criteria\nCriteria and procedures for outlier exclusion and data transformation\nPrimary hypotheses or outcomes to be tested (or an explicit statement that the study is simply exploratory)\n\nIn cases where you can’t say exactly how you will do something (usually because the choices are data-dependent), outline your procedures for determining how to do the thing, and in particular what aspects of the data will go into making that decision.\n\nIn some cases, multi-stage pre-registration may be appropriate\n\nE.g. when an initial discovery sample is used to determine hypotheses for subsequent testing in a validation sample\nIn this case, the initial pre-registration should lay out the sampling plan and procedures for data splitting, as well as the plan for followup pre-registrations.\n\nFor fMRI studies, pre-registration should specify:\n\nAny anatomical regions of interest to be used (with a specific definition and/or image mask for the region)\nMotion modeling strategies (including trial- or subject-level exclusion criteria)\nConfound modeling strategies at the trial-, subject- and group-level (including the specific design of response time modeling strategies)\n\nDeviations from pre-registration\n\nPre-registration should not be viewed as handcuffs. If a detail of the pre-registration is clearly suboptimal, then the rationale for using a more appropriate method should be noted, and the optimal method should be used.\nPublications should include an explicit “Deviations from pre-registration” section that outlines any deviations and their rationale.\n\n\n\n\nWhenever possible, we support the submission of Registered Reports.\nRegistered reports are a publication mechanism in which one submits a manuscript that contains an Introduction and Methods section that describe a study prior to execution of the research; it is essential a written version of a pre-registration.\nThe manuscript is reviewed on the strength of the rationale and methods, and if deemed sufficient it is given an “in-principle acceptance” such that the journal guarantees to publish the paper regardless of the results, as long as the approved methods were followed.\nThere are currently over 300 journals that accept Registered Report submissions.\nIn addition, Registered Reports can be submitted to PCI-RR, which is a community project that reviews preprint Registered Reports.",
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-    "text": "All research-related materials (including data and code) should be stored on a volume that is automatically backed up to a cloud storage server, such as Google Drive (which provides free storage via your Stanford login).\n\nStanford also provides access to Crashplan backups for faculty and staff which automatically backs up laptops and computers.\n\n\nNeuroimaging datasets should be backed up on TACC Corral.\n\nEvery dataset should be organized with the goal that another researcher could take the dataset and immediately understand its content without the need to ask questions of the dataset owner.\nAll imaging data should be organized using the BIDS format.\nFor non-imaging data, files and folders should be named and organized using the Psych-DS format when possible.\nVariable names should be as expressive as possible, with automated parsing in mind. The structure of variable names should follow the key-value schema used in BIDS (with key and value separated by a dash, and key-value pairs separated by underscores). All embedded numbers should be zero-padded.\n\nExamples:\nfor item 5 on the Barratt Impulsiveness Scale, the variable name might be “survey-BIS_item-005”\n\nAll datasets should be accompanied by a data dictionary that specifies the meaning of each variable.\n\nThis should preferably be stored as a JSON file, with variable names as dictionary keys to support automated parsing.\n\n\n\n\n\n\nAll data generated within our lab will be shared upon publication at the latest, and preferably upon preprint submission.\nIn some cases, we may work with datasets that we are not able to share in full, due to data use agreements or legal restrictions. In this case, we will push to share at least the processed data necessary to run the primary statistical analyses.\nData will be shared through platforms that allow snapshotting and generation of a DOI:\n\nOpenNeuro for neuroimaging data\nFor behavioral data, repositories include Zenodo (preferred), OSF, Stanford Digital Repository, or Dryad.\nLarge data files should not be committed to Github repositories. Small data files may be hosted on github, but it should not be the primary sharing platform.\n\n\nA snapshot should be shared that matches exactly the analyses in the publication, and which can be analyzed directly using the shared analysis code.\nAll data will be shared with an explicit data use agreement (aka “license”)\n\nWe prefer the minimally restrictive license possible, preferably CC0\n\nAll data should be shared with an explicit description of how they should be cited.\nWhen using shared data, lab members should ensure that they properly cite the data source in any publications using the language recommended by the data owner.",
+    "text": "Pre-registration is a mechanism in which one places a detailed description of a planned study into a repository where it is timestamped and will remain immutable.\nFor more background information, see here.\n\nAll empirical projects will be pre-registered, preferably using the Open Science Framework.\n\nPilot studies need not be pre-registered, but should then be subject to a pre-registered replication or extension.\n\nPre-registration should include as much detail as possible. Pre-registration must include at minimum:\n\nSample size (with justification)\nInclusion/exclusion criteria\nCriteria and procedures for outlier exclusion and data transformation\nPrimary hypotheses or outcomes to be tested (or an explicit statement that the study is simply exploratory)\n\nIn cases where you can’t say exactly how you will do something (usually because the choices are data-dependent), outline your procedures for determining how to do the thing, and in particular what aspects of the data will go into making that decision.\n\nIn some cases, multi-stage pre-registration may be appropriate\n\nE.g. when an initial discovery sample is used to determine hypotheses for subsequent testing in a validation sample\nIn this case, the initial pre-registration should lay out the sampling plan and procedures for data splitting, as well as the plan for followup pre-registrations.\n\nFor fMRI studies, pre-registration should specify:\n\nAny anatomical regions of interest to be used (with a specific definition and/or image mask for the region)\nMotion modeling strategies (including trial- or subject-level exclusion criteria)\nConfound modeling strategies at the trial-, subject- and group-level (including the specific design of response time modeling strategies)\n\nDeviations from pre-registration\n\nPre-registration should not be viewed as handcuffs. If a detail of the pre-registration is clearly suboptimal, then the rationale for using a more appropriate method should be noted, and the optimal method should be used.\nPublications should include an explicit “Deviations from pre-registration” section that outlines any deviations and their rationale.\n\n\n\n\nWhenever possible, we support the submission of Registered Reports.\nRegistered reports are a publication mechanism in which one submits a manuscript that contains an Introduction and Methods section that describe a study prior to execution of the research; it is essential a written version of a pre-registration.\nThe manuscript is reviewed on the strength of the rationale and methods, and if deemed sufficient it is given an “in-principle acceptance” such that the journal guarantees to publish the paper regardless of the results, as long as the approved methods were followed.\nThere are currently over 300 journals that accept Registered Report submissions.\nIn addition, Registered Reports can be submitted to PCI-RR, which is a community project that reviews preprint Registered Reports.",
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-    "text": "All research-related materials (including data and code) should be stored on a volume that is automatically backed up to a cloud storage server, such as Google Drive (which provides free storage via your Stanford login).\n\nStanford also provides access to Crashplan backups for faculty and staff which automatically backs up laptops and computers.\n\n\nNeuroimaging datasets should be backed up on TACC Corral.\n\nEvery dataset should be organized with the goal that another researcher could take the dataset and immediately understand its content without the need to ask questions of the dataset owner.\nAll imaging data should be organized using the BIDS format.\nFor non-imaging data, files and folders should be named and organized using the Psych-DS format when possible.\nVariable names should be as expressive as possible, with automated parsing in mind. The structure of variable names should follow the key-value schema used in BIDS (with key and value separated by a dash, and key-value pairs separated by underscores). All embedded numbers should be zero-padded.\n\nExamples:\nfor item 5 on the Barratt Impulsiveness Scale, the variable name might be “survey-BIS_item-005”\n\nAll datasets should be accompanied by a data dictionary that specifies the meaning of each variable.\n\nThis should preferably be stored as a JSON file, with variable names as dictionary keys to support automated parsing.",
+    "text": "All code should be managed using a version control system, preferably git.\n\nThere are many resources online for learning git. A good starting point is Git for beginners: The definitive practical guide.\nGit questions can be addressed to the #git channel on the Poldracklab Slack.\n\nCode should be regularly pushed to a remote server, preferably Github.\n\nOur default is that all repositories for research projects will be public, unless there is a strong reason to keep it private.\n\nAny substantive code copied or adapted from another source (e.g. stackoverflow) should be attributed to the source (including the URL of the source).\n\nReferences to the copied or adapted sources should be added to the script files where they are written (preferably on the line before the source).\nCreate a notices.md following this template to reference larger portions of code that were copied or adapted to your project.\n\nCare must be taken to avoid sharing identifiable data, private passwords, AWS credentials, and other confidential information when using Github.\n\nAny private information should be stored in a separate text file that is read in by the code, and those files should be added to the .gitignore file so that they will not be checked in.\nAny accidental breach should be dealt with and reported to Dr. Poldrack and other relevant parties immediately.\n\n\n\n\n\n\nAll coding projects should be reviewed prior to paper submission.\n\n\n\n\n\nAll code should be made available via Github, upon submission of the preprint at the latest.\nAll shared code should be accompanied by an open source license.\n\nOur general preference is for permissive licenses such as MIT or Apache, but other licenses may be used (e.g. in collaborative projects that use GPL-style licenses).\nIf code is used from other projects, the licensing requirements for that code should be obeyed.\n\nA Github release should be generated for code related to any paper submission, containing the exact code used to implement all of the included analyses for the submitted version.\n\nThe Github repository should be linked to Zenodo in order to generate a DOI for each release, and this DOI should be included in the manuscript (rather than the Github link).",
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-    "text": "All data generated within our lab will be shared upon publication at the latest, and preferably upon preprint submission.\nIn some cases, we may work with datasets that we are not able to share in full, due to data use agreements or legal restrictions. In this case, we will push to share at least the processed data necessary to run the primary statistical analyses.\nData will be shared through platforms that allow snapshotting and generation of a DOI:\n\nOpenNeuro for neuroimaging data\nFor behavioral data, repositories include Zenodo (preferred), OSF, Stanford Digital Repository, or Dryad.\nLarge data files should not be committed to Github repositories. Small data files may be hosted on github, but it should not be the primary sharing platform.\n\n\nA snapshot should be shared that matches exactly the analyses in the publication, and which can be analyzed directly using the shared analysis code.\nAll data will be shared with an explicit data use agreement (aka “license”)\n\nWe prefer the minimally restrictive license possible, preferably CC0\n\nAll data should be shared with an explicit description of how they should be cited.\nWhen using shared data, lab members should ensure that they properly cite the data source in any publications using the language recommended by the data owner.",
+    "text": "All code should be managed using a version control system, preferably git.\n\nThere are many resources online for learning git. A good starting point is Git for beginners: The definitive practical guide.\nGit questions can be addressed to the #git channel on the Poldracklab Slack.\n\nCode should be regularly pushed to a remote server, preferably Github.\n\nOur default is that all repositories for research projects will be public, unless there is a strong reason to keep it private.\n\nAny substantive code copied or adapted from another source (e.g. stackoverflow) should be attributed to the source (including the URL of the source).\n\nReferences to the copied or adapted sources should be added to the script files where they are written (preferably on the line before the source).\nCreate a notices.md following this template to reference larger portions of code that were copied or adapted to your project.\n\nCare must be taken to avoid sharing identifiable data, private passwords, AWS credentials, and other confidential information when using Github.\n\nAny private information should be stored in a separate text file that is read in by the code, and those files should be added to the .gitignore file so that they will not be checked in.\nAny accidental breach should be dealt with and reported to Dr. Poldrack and other relevant parties immediately.",
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-    "text": "Do not hesitate to ask Jeanette Mumford for help with any statistical analyses.\n\n\n\n\n\nMethods for multiple testing correction should be chosen prior to data analysis and reported in the preregistration document.\nThe nature of grouping for multiple testing corrections (e.g., parameter within single models, sets of models, etc) should be pre-specified.\nFor fMRI data, if using cluster-based thresholding the cluster forming threshold must be Z ≥ 3.1 if using parametric thresholding. There are no restrictions on threshold when using nonparametric thresholding, but the threshold should be pre-specified.\n\n\n\n\n\nProper cross-validation practices should be considered. Refer to https://pubmed.ncbi.nlm.nih.gov/31774490/ for more detail.\n\nIn-sample model fit indices should not be reported as evidence for predictive accuracy\nThe cross-validation procedure should encompass all operations applied to the data\nPrediction analyses should not be performed with samples smaller than several hundred observations\nMultiple measures of prediction accuracy should be examined and reported\nThe coefficient of determination should be computed using the sums of squares formulation and not the squared correlation coefficient\nLeave-one-out cross-validation should be avoided in favor of shuffle-split or K-fold cross-validation.\n\n\n\n\n\n\nMixed effects models should include all possible random effects, subject to the constraint of adequate model convergence.\nConvergence should be checked for all models, and models should be checked for highly influential observations.\nSimplification or random effects structure can be done if the p-value &gt; 0.2 (https://www.google.com/url?q=https://www.sciencedirect.com/science/article/pii/S0749596X17300013&sa=D&source=editors&ust=1623857125982000&usg=AOvVaw2E_twuab7e56Nn_i1yTdmn) assuming convergence.\n\n\n\n\n\nDoes the model properly test the hypothesis of interest?\nDo the data conform to the assumptions of the model?\n\nAll model fits should be criticized to identify violation of any assumptions or presence of outliers.\n\n\n\n\n\nEffect size, parameter estimate, standard error, p-value and confidence interval should all be reported.\nIn cases where null effects are reported, some measure of evidence for the null hypothesis (e.g. Bayes factors, equivalence tests) should be reported.\nResults for all analyses that were preregistered should be reported.",
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-    "text": "Do not hesitate to ask Jeanette Mumford for help with any statistical analyses.",
+    "text": "All code should be made available via Github, upon submission of the preprint at the latest.\nAll shared code should be accompanied by an open source license.\n\nOur general preference is for permissive licenses such as MIT or Apache, but other licenses may be used (e.g. in collaborative projects that use GPL-style licenses).\nIf code is used from other projects, the licensing requirements for that code should be obeyed.\n\nA Github release should be generated for code related to any paper submission, containing the exact code used to implement all of the included analyses for the submitted version.\n\nThe Github repository should be linked to Zenodo in order to generate a DOI for each release, and this DOI should be included in the manuscript (rather than the Github link).",
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-    "text": "Methods for multiple testing correction should be chosen prior to data analysis and reported in the preregistration document.\nThe nature of grouping for multiple testing corrections (e.g., parameter within single models, sets of models, etc) should be pre-specified.\nFor fMRI data, if using cluster-based thresholding the cluster forming threshold must be Z ≥ 3.1 if using parametric thresholding. There are no restrictions on threshold when using nonparametric thresholding, but the threshold should be pre-specified.",
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+    "text": "All products of research at Stanford (including data and code) are the property of the University. However, faculty have wide latitude to release software as open source under the University’s open source policy, as long as it doesn’t conflict with any other obligations. Students are allowed to release code under an open source license at Stanford with faculty permission; students in the Poldracklab have blanket permission to do so, as all of our code is intended to be made open available, as discussed in the section on code sharing. After leaving the lab, trainees can continue to reuse any code or other research materials (e.g. stimuli) developed as part of their work in the lab as long as the code has been released under an open source license and they continue to abide by the terms of the license.\nAs discussed in the section on data management and sharing, all data collected within our laboratory is meant to be shared upon submission of the related paper. In cases where these data can be deidentified they will be shared under a public domain dedication (CC0), which places no restrictions on their use by other researchers. Thus, any researcher can continue to use those data once they leave the lab. In other cases it may be necessary to restrict data sharing (e.g. when the data cannot be deidentified), in which case researchers will need to obtain a data use agreement from Stanford in order to access those data at their new institution. Dr. Poldrack commits to supporting any such requests, unless they violate other obligations of his or the University.\nIn many cases we use data within the lab under Data Use Agreements (such as the ABCD or HCP datasets), and any researcher wishing to use such datasets must be explicitly listed on the DUA. Once a researcher is no longer included in the Stanford DUA for a particular dataset, they must no longer access the dataset via Stanford computer systems.\n\n\nWhen a trainee leaves the lab, there is often uncertainty about which ideas are theirs to pursue independently and which must be pursued in collaboration with their former mentor. It is difficult to specify a blanket policy on this issue, as it will depend on many different circumstances. Trainees are encouraged to discuss this issue openly with Dr. Poldrack prior to departing the lab, to prevent any misunderstandings. In many cases Dr. Poldrack will be happy for the trainee to take the ideas and pursue them independently in their new position; this has happened on a number of occasions. In other cases, particularly when the ideas were developed in close collaboration with Dr. Poldrack, there may be an expectation that further development of the ideas will occur through collaborative efforts.",
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-    "text": "Proper cross-validation practices should be considered. Refer to https://pubmed.ncbi.nlm.nih.gov/31774490/ for more detail.\n\nIn-sample model fit indices should not be reported as evidence for predictive accuracy\nThe cross-validation procedure should encompass all operations applied to the data\nPrediction analyses should not be performed with samples smaller than several hundred observations\nMultiple measures of prediction accuracy should be examined and reported\nThe coefficient of determination should be computed using the sums of squares formulation and not the squared correlation coefficient\nLeave-one-out cross-validation should be avoided in favor of shuffle-split or K-fold cross-validation.",
+    "text": "When a trainee leaves the lab, there is often uncertainty about which ideas are theirs to pursue independently and which must be pursued in collaboration with their former mentor. It is difficult to specify a blanket policy on this issue, as it will depend on many different circumstances. Trainees are encouraged to discuss this issue openly with Dr. Poldrack prior to departing the lab, to prevent any misunderstandings. In many cases Dr. Poldrack will be happy for the trainee to take the ideas and pursue them independently in their new position; this has happened on a number of occasions. In other cases, particularly when the ideas were developed in close collaboration with Dr. Poldrack, there may be an expectation that further development of the ideas will occur through collaborative efforts.",
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-    "text": "Mixed effects models should include all possible random effects, subject to the constraint of adequate model convergence.\nConvergence should be checked for all models, and models should be checked for highly influential observations.\nSimplification or random effects structure can be done if the p-value &gt; 0.2 (https://www.google.com/url?q=https://www.sciencedirect.com/science/article/pii/S0749596X17300013&sa=D&source=editors&ust=1623857125982000&usg=AOvVaw2E_twuab7e56Nn_i1yTdmn) assuming convergence.",
+    "text": "We affirm the scientific utility and importance of both exploratory and hypothesis-driven (confirmatory) research, but it is essential that they be clearly distinguished.\nAll research will be considered exploratory unless the hypotheses and analysis methods were pre-registered.\n\n\n\n\n\nFor datasets where it is feasible, the data should be visually examined for outliers or aberrant patterns (e.g. zero-inflation) using pair plots or other appropriate methods.\nAnalysis procedures should be tested on the first subject (for fMRI) or first few subjects (for behavioral studies) before collecting any additional data, to ensure that the data are appropriately recorded.\nFor MRI data being acquired by the lab, research coordinators should run MRIQC and view the reports within one week of acquisition.\n\n\n\n\n\nWhen possible, all analysis code should be tested on simulated data to ensure positive and negative control prior to any analysis of the real data.\nPositive controls should ensure that effects of interest are detected when present\n\nThese can also be extended to perform power analysis.\n\nNegative controls should ensure that no effects are detected when the null is true\nIn some cases, it is necessary to understand the nature of the data (e.g. distributions of variables) in order to develop appropriate analysis and simulation code. In these cases, the researcher will ask Dr. Poldrack or another lab member to generate a simulated dataset based on their actual data (e.g. by randomly shuffling the observations of each variable to create a knockoff dataset that maintains each variable’s marginal distribution), prior to any analyses.\n\n\n\n\n\nWhen possible, all data analyses should be replicated by an independent analyst who is blind to the results of the initial analysis.\nIf discordant results are observed, then the analysts will work together to determine their source, and whether they reflect error versus true analytic variability.\n\n\n\n\n\nAll analysis procedures should be implemented in code and runnable with a single command.\nWe aim to avoid any analyses that involve manual intervention. If such analyses are necessary (e.g. for identifying anatomical brain regions), the specific protocol should be described, and if possible the manual operation should be recorded using screen capture.\nThe entire software environment should be at best reproducible, or at minimum recordable.\n\nThe best practice is to implement all analyses within a Docker image that can be shared with the code.\nIf possible, the versions of all software libraries should be pinned.\nAt minimum, the entire software environment (including library versions) should be recorded and included with the shared results.",
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-    "text": "Does the model properly test the hypothesis of interest?\nDo the data conform to the assumptions of the model?\n\nAll model fits should be criticized to identify violation of any assumptions or presence of outliers.",
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-    "text": "Effect size, parameter estimate, standard error, p-value and confidence interval should all be reported.\nIn cases where null effects are reported, some measure of evidence for the null hypothesis (e.g. Bayes factors, equivalence tests) should be reported.\nResults for all analyses that were preregistered should be reported.",
+    "text": "For datasets where it is feasible, the data should be visually examined for outliers or aberrant patterns (e.g. zero-inflation) using pair plots or other appropriate methods.\nAnalysis procedures should be tested on the first subject (for fMRI) or first few subjects (for behavioral studies) before collecting any additional data, to ensure that the data are appropriately recorded.\nFor MRI data being acquired by the lab, research coordinators should run MRIQC and view the reports within one week of acquisition.",
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-    "text": "Documenting research activities\n\nDetailed procedures should be documented throughout any ongoing research activities, including subject recruitment procedures, subject running procedures, analysis plans, and readme’s for any code base. Documentation should be sufficient to allow a new researcher or research coordinator to be able to understand any ongoing research procedures with minimal (ideally no) additional guidance from other research staff.\nThis documentation should be ready to be made available to Dr. Poldrack or other lab members at any time, preferably via an online platform such as Google Docs.",
+    "text": "When possible, all analysis code should be tested on simulated data to ensure positive and negative control prior to any analysis of the real data.\nPositive controls should ensure that effects of interest are detected when present\n\nThese can also be extended to perform power analysis.\n\nNegative controls should ensure that no effects are detected when the null is true\nIn some cases, it is necessary to understand the nature of the data (e.g. distributions of variables) in order to develop appropriate analysis and simulation code. In these cases, the researcher will ask Dr. Poldrack or another lab member to generate a simulated dataset based on their actual data (e.g. by randomly shuffling the observations of each variable to create a knockoff dataset that maintains each variable’s marginal distribution), prior to any analyses.",
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-    "text": "Human subjects research\n\nAll lab members engaged in research must complete the relevant human subjects training through CITI. A detailed list of relevant training courses is provided to new members as part of the lab’s internal onboarding materials.\n\nNo personal identifiers should ever be associated with data recorded in the laboratory. This includes the 18 identifiers specified by HIPAA, as well as any other identifiers that could potentially be used to re-identify an individual.\nAll brain imaging data should be defaced prior to analysis and sharing. Behavioural data should not contain personal identifiers (such as for example Amazon Turk ID for data collected online).\n\nDemographic data must be obtained for all subjects, in order to fulfill NIH inclusion reporting requirements and IRB documentation.\nRedcap should be used for recruitment and screening, as well as e-consents.\n\nIRB maintenance is done by the research coordinators or the person leading the project.\n\nAll projects considered a clinical trial should be posted on ClinicalTrials.gov",
+    "text": "When possible, all data analyses should be replicated by an independent analyst who is blind to the results of the initial analysis.\nIf discordant results are observed, then the analysts will work together to determine their source, and whether they reflect error versus true analytic variability.",
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-    "text": "If we identify an error in a published paper from the lab, all authors should convene promptly to discuss what if any conclusions are affected by the error. Most journals have a mechanism for either publishing a correction to the article when the primary conclusions of the paper are not substantially affected, or retracting the article if they are. All authors should agree on whether a correction or retraction is warranted, and promptly notify the journal of their recommendation and the nature of the error. If applicable, a notification and corrected version of the article should also be submitted to the preprint server (e.g. bioRxiv), and internal copies of the paper should be corrected and versioned accordingly.",
+    "text": "All analysis procedures should be implemented in code and runnable with a single command.\nWe aim to avoid any analyses that involve manual intervention. If such analyses are necessary (e.g. for identifying anatomical brain regions), the specific protocol should be described, and if possible the manual operation should be recorded using screen capture.\nThe entire software environment should be at best reproducible, or at minimum recordable.\n\nThe best practice is to implement all analyses within a Docker image that can be shared with the code.\nIf possible, the versions of all software libraries should be pinned.\nAt minimum, the entire software environment (including library versions) should be recorded and included with the shared results.",
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-    "text": "The lab’s policy follows the IJCME recommendations on Defining the Role of Authors and Contributors, which state that authorship should be based on four criteria:\n\nSubstantial contributions to the conception or design of the work; or the acquisition, analysis, or interpretation of data for the work; AND\nDrafting the work or revising it critically for important intellectual content; AND\nFinal approval of the version to be published; AND\nAgreement to be accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved.\n\nImportantly, we view substantial contributions to data acquisition or analysis alone to be sufficient for authorship on the primary project manuscript, as long criteria 2-4 are met. For this reason, research assistants in our lab often end up being coauthors on our publications.\nCriterion #1 also implies that Dr. Poldrack will not accept authorship on any work that he has not played a substantial role in either designing, analyzing, or interpreting. Please do not send completed manuscripts with a request for him to be a coauthor.\nThe sharing of data is not considered to be sufficient on its own to warrant authorship; instead, credit should be given through citation of a data descriptor and/or dataset DOI. However, authorship is appropriate in cases where the dataset owner provides substantial input into the research, or when required by the data use agreement.",
+    "text": "When we select journals for publication, we will prioritize publishing in journals that offer an Open Access option. However, we realize that sometimes the most appropriate journal for a particular paper will be one that does not offer this option.\nWhen project funding is not available for open access publication fees, Dr. Poldrack will cover these fees using unrestricted funds.",
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-    "text": "The lab’s policy follows the IJCME recommendations on Defining the Role of Authors and Contributors, which state that authorship should be based on four criteria:\n\nSubstantial contributions to the conception or design of the work; or the acquisition, analysis, or interpretation of data for the work; AND\nDrafting the work or revising it critically for important intellectual content; AND\nFinal approval of the version to be published; AND\nAgreement to be accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved.\n\nImportantly, we view substantial contributions to data acquisition or analysis alone to be sufficient for authorship on the primary project manuscript, as long criteria 2-4 are met. For this reason, research assistants in our lab often end up being coauthors on our publications.\nCriterion #1 also implies that Dr. Poldrack will not accept authorship on any work that he has not played a substantial role in either designing, analyzing, or interpreting. Please do not send completed manuscripts with a request for him to be a coauthor.\nThe sharing of data is not considered to be sufficient on its own to warrant authorship; instead, credit should be given through citation of a data descriptor and/or dataset DOI. However, authorship is appropriate in cases where the dataset owner provides substantial input into the research, or when required by the data use agreement.",
+    "text": "When we select journals for publication, we will prioritize publishing in journals that offer an Open Access option. However, we realize that sometimes the most appropriate journal for a particular paper will be one that does not offer this option.\nWhen project funding is not available for open access publication fees, Dr. Poldrack will cover these fees using unrestricted funds.",
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-    "text": "Affiliation\nThe listed affiliation for a publication should include any institutions where one was affiliated while completing the work.\n- Any work completed at Stanford should include the Stanford affiliation, even if the individual has left Stanford. - Work completed prior to joining Stanford but published after joining the lab does not need to include the Stanford affiliation, but it may be included (along with the institution where the work was completed) if work was done on the paper after joining the lab.",
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+    "text": "Preprints\n\nAll papers should be uploaded to a relevant preprint archive prior to or upon submission, unless the target journal does not allow preprint publication.\nOur general policy is to avoid publishing in journals that do not allow preprint posting, unless there is a very strong reason to do so.",
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-    "text": "The fundamental mission of our lab is to understand how human brain computations give rise to decisions and actions, with a particular focus on how humans exert control over their behavior. We use a broad set of methods, including neuroimaging, behavior, and computation. We are committed to doing our work in as transparent and reproducible way as possible, and in building tools and resources to help other researchers achieve these aims as well. We aim to sustain a laboratory community in which everyone feels welcomed, respected, and intellectually stimulated.",
+    "text": "The laboratory will generally fund the attendance of members to at least one conference per year, pending funding availability.\n\nWhile funding is usually tied to presenting at the meeting, in some cases the lab will fund members to attend who are not presenting, depending on the meeting location and funding availability.\nWe regularly fund the attendance of research assistants to conferences as we think this is an essential aspect of their training experience.\n\nConference abstract submissions must be completed at least one week before the final deadline, to allow coauthors sufficient time to review the submission.\nLab members are encouraged to find satellite opportunities (such as hackathons or workshops) to maximize the benefit of their conference travel.\nConferences we attend (roughly in order of frequency):\n\nOrganization for Human Brain Mapping (our primary meeting)\nCognitive Computational Neuroscience\nSociety for Neuroscience\nPsychonomic Society\nNeuroeconomics\nFLUX\nCognitive Neuroscience Society (CNS)",
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-    "text": "All lab members and guests are expected to adhere to the following code of conduct. In addition, all Stanford University affiliates are required to adhere to the University Code of Conduct. For definitions of an act of intolerance & hate crime escalation policy please see this page on University AOI. If you wish to speak with someone outside of the lab regarding an incident that occurred in or outside of the lab, the university has this list of resources.",
+    "text": "We affirm the importance and value of engaging with non-expert audiences, and support the efforts of lab members in service of science communication. We encourage lab members to work to develop their science communication skills and to seek out opportunities to engage with the public about science.\nIn some cases, laboratory findings may be of sufficient public interest to warrant a University press release. In these cases we will work with the University’s public relations team to develop a press release. In our interactions with the public relations team, we will express our intent to not exaggerate or oversimplify the findings.\nIf we are contacted by members of the press about our research, we will try to make ourselves available for comment to the extent possible. We will work to use accessible language while also communicating the nuances of our work. We may ask journalists to send us paraphrased versions of our quotes to check them for accuracy before the publication of any article, though we recognize that some journalists might not be willing to do so.",
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-    "text": "Statement of intent\nOur lab is dedicated to providing a safe and welcoming environment for everyone. We do not tolerate harassment for any form of identity such as but not limited to: sex, gender identity, age, sexual orientation, disability including mental illness, physical appearance, body size, race, ethnicity, religion (including the lack thereof), or socioeconomic status. We do not tolerate harassment of lab members or guests in any form. Sexual language and imagery is not appropriate for any lab event or venue, including talks, workshops, parties, Twitter and other online media.",
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+    "text": "This guide provides details about the mission, values, and practices of the Poldrack Lab at Stanford. This guide is intended for:\n\nIndividuals who are joining the lab, to describe the standards and practices that they are expected to adhere to\nIndividuals who are considering joining the lab, to provide a picture of the lab environment and practices.\n\nAdditional contributions to this guide are welcome!\n\nIf you wish to comment on the content or make suggestions, please use the issues page.\nIf you wish to edit the content directly, please start by discussing your proposed change on the issues page. Once you have made sure that your proposed change doesn’t overlap with other ongoing work, you can fork the repository and submit a pull request with your proposed change. See this guide from the Turing Way for details on how to contribute via pull request.\n\nThis work is licensed under a Creative Commons Attribution 4.0 International License."
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+    "text": "All researchers in the lab are expected to attend the weekly lab meeting, except in cases of unavoidable conflict (such as course scheduling). It generally lasts 1-2 hours and all the members are invited to share the main activities of the last week. Additional activities at the lab meeting include: presentations of research projects or data; talks by external speakers; discussions of specific research papers; code reviews in which a lab member’s code is reviewed online with a focus on refactoring.\n\nAll members of the information technology team are expected to attend the weekly IT meeting.\nDr. Poldrack relies primarily upon email for communication, and generally responds quickly to emails unless traveling or away from work. He expects lab members to respond to emails within one business day unless they are away from work (even if the response is simply to acknowledge receipt of the message).",
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-    "text": "Details of Lab Code of Conduct\n\nHarassment includes offensive verbal comments related to a person’s identity or presentation of their identity. This can include denigrating comments, microaggressions, or consistent interruption during talks or presentations\nSexual harassment includes: displays of sexual images in public lab spaces, deliberate intimidation, stalking/ following, coerced photography or recording, inappropriate physical contact, and unwelcome sexual attention.",
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+    "text": "We aim to promote sustainable creativity and productivity for all of our members, which can’t be achieved without a healthy balance between work and personal life.\nNo lab member is expected to work in ways that interfere with a healthy life. Work should not be so excessive as to interfere with sleep, exercise, or family/personal time.\nLab members are expected to be proactive regarding deadlines, to avoid last-minute scrambles. Dr. Poldrack and other lab members may decline to support submissions that are prepared with insufficient lead time.\nWe aim to promote an environment that is understanding and supportive of individuals with child care and adult care responsibilities. This includes but is not limited to offering flexible work hours to help individuals with familial responsibilities.\n\nThe lab is committed to fully supporting individuals with chronic physical and/or mental illnesses, as well as individuals with accessibility needs. No lab member will be discriminated against because of their chronic diagnosis or health-related limitations of their ability to work. Lab members are encouraged to prioritize their physical and mental health as much as possible, and the lab is prepared to support them in doing so.\nLab members who are seeking time off for health (including mental health) reasons are strongly encouraged, though absolutely not required, to speak with Dr. Poldrack about their concerns. Dr. Poldrack commits to approaching these conversations in a nonjudgmental and empathetic manner, and to working with all lab members to find a solution that works best for them.",
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-    "text": "Responding to incidents\n\nLab members asked to stop any misconduct are expected to comply immediately. Justification for the request does not need to be provided, nor does the reporting party of the incident need to be identified.\nIf you are being harassed, notice that someone else is being harassed, or have any other concerns, please contact Dr. Poldrack as soon as possible. Anonymous comments may also be made to Dr. Poldrack using this form. If you are not comfortable contacting him directly, you may report your concerns to one of the relevant Stanford University offices that are prepared to respond to harassment complaints.\nWe expect lab members to follow this code of conduct at conferences and workshops and related social events, and whenever they are representing the lab in a professional context.\nWhen lab members are invited to participate in a professional event, they are expected to inquire regarding the steps that the organizers are taking to ensure diversity prior to accepting any invitation. This includes declining participation in exclusionary events such as panels or talks. For example, men in the lab should avoid participating in all-men panels whenever possible, keeping in mind that this may be more achievable for senior versus junior lab members.\n\nAdapted from https://en-us.confcodeofconduct.com/.",
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+    "text": "The Poldracklab has a long history of remote members, and we support the needs of lab members who must work remotely.\n\nAny remote work must be discussed with and approved by Dr. Poldrack and arranged in accordance with Stanford University Policies on Staff Telecommuting and Remote Working.",
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-    "text": "Lab environment\nIn the Poldrack Lab, we want all of our lab members to feel valued, appreciated, safe, and free to be who they are. We embrace diversity and are committed to preventing discrimination against people based on gender identity or expression, sexual orientation, race, ethnicity, religion, age, neurodiversity, disability status, citizenship, or any other feature that makes them unique."
+    "text": "This section describes how the lab manages datasets on Sherlock, including setting permissions (i.e., who else in the lab can access the dataset).\nDatasets that are considered to be common lab assets (which includes any new studies within the lab and any openly shared datasets) should be placed into the primary data directory on the relevant filesystem. Datasets that are in process of acquisition should go into the “inprocess” directory. Once the dataset is finalized, it should be moved into the “data” directory.\nOnce a dataset has been installed in the data directory, it should be changed to be read-only for owner and group, using the following commands:\nfind &lt;directory name&gt; -type d -exec chmod 550\nfind &lt;directory name&gt; -type f -exec chmod 440\nDatasets that are temporary, or files generated for analyses that are not intended to be reused or shared, should be placed within the user directory.\n\n\nSome data resources cannot be shared across the lab and instead need to be restricted to lab members with Data Usage Agreement (DUA) access. This can be done via access control lists (ACLs), which allow a resource to be owned by a particular owner/group, but applies an additional more specific set of permissions. The following can be adapted to restrict ACLs to an appropriate subset of lab members:\n\n\nprotect_access.sh\n\n#!/bin/bash\n\necho \"Using ACLs to restrict folder access on oak for russpold folders\"\necho -e \"\\t https://www.sherlock.stanford.edu/docs/storage/data-sharing/#posix-acls \"\nsleep 1\necho\n# get user input for directory + user\nread -p \"Enter the folder path: \" dir_name\nif [ ! -d \"$dir_name\" ]; then\n    echo \"Error: ${dir_name} doesn't exist\"\n    exit 1\nfi\n\nread -p \"Enter the username: \" user_name\n\n# set restrictions, repeating once for each desired user\necho -e \"Setting restrictions for ${user_name} as rxw for folder: /n ${dir_name}\"\nsetfacl -R -m u:$user_name:rwx $dir_name\nsetfacl -R -d -m u:$user_name:rwx $dir_name\n# repeat the above commands, replacing $user_name with the usernames\n# for additional members\n\n# rm default permissions for the group -- oak_russpold\nsetfacl -m d::group:oak_russpold:--- $dir_name",
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-    "text": "In order to ensure that the environment remains welcoming and productive for everyone, we will conduct a yearly survey of lab members regarding the lab environment (link to example). This survey will be completed at the end of the Spring Quarter (in June).",
+    "text": "This section describes how the lab manages datasets on Sherlock, including setting permissions (i.e., who else in the lab can access the dataset).\nDatasets that are considered to be common lab assets (which includes any new studies within the lab and any openly shared datasets) should be placed into the primary data directory on the relevant filesystem. Datasets that are in process of acquisition should go into the “inprocess” directory. Once the dataset is finalized, it should be moved into the “data” directory.\nOnce a dataset has been installed in the data directory, it should be changed to be read-only for owner and group, using the following commands:\nfind &lt;directory name&gt; -type d -exec chmod 550\nfind &lt;directory name&gt; -type f -exec chmod 440\nDatasets that are temporary, or files generated for analyses that are not intended to be reused or shared, should be placed within the user directory.\n\n\nSome data resources cannot be shared across the lab and instead need to be restricted to lab members with Data Usage Agreement (DUA) access. This can be done via access control lists (ACLs), which allow a resource to be owned by a particular owner/group, but applies an additional more specific set of permissions. The following can be adapted to restrict ACLs to an appropriate subset of lab members:\n\n\nprotect_access.sh\n\n#!/bin/bash\n\necho \"Using ACLs to restrict folder access on oak for russpold folders\"\necho -e \"\\t https://www.sherlock.stanford.edu/docs/storage/data-sharing/#posix-acls \"\nsleep 1\necho\n# get user input for directory + user\nread -p \"Enter the folder path: \" dir_name\nif [ ! -d \"$dir_name\" ]; then\n    echo \"Error: ${dir_name} doesn't exist\"\n    exit 1\nfi\n\nread -p \"Enter the username: \" user_name\n\n# set restrictions, repeating once for each desired user\necho -e \"Setting restrictions for ${user_name} as rxw for folder: /n ${dir_name}\"\nsetfacl -R -m u:$user_name:rwx $dir_name\nsetfacl -R -d -m u:$user_name:rwx $dir_name\n# repeat the above commands, replacing $user_name with the usernames\n# for additional members\n\n# rm default permissions for the group -- oak_russpold\nsetfacl -m d::group:oak_russpold:--- $dir_name",
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     "text": "Any servers managed by lab members for research purposes must meet the Stanford Minimum Security Standards.",
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     "text": "Any servers managed by lab members for research purposes must meet the Stanford Minimum Security Standards.",
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-    "text": "Shared computing platforms\nWe use two primary shared computing platforms:\n\nStanford Research Computing Center\nTexas Advanced Computing Center\n\nThe decision regarding which platform to use will depend upon the specific needs of the project, and can be discussed with Dr. Poldrack or other experienced researchers in the lab.\n\nShared computing etiquette\nLab members should follow good shared computing etiquette:\n\nNever run a computing job on the login node\n\nFor testing purposes, you can access a development node.\n\nKeep in mind that our allocation on these systems is limited.\nRun a small test job before starting a large job\nEnsure that your jobs are efficiently using the system resources - if you aren’t sure, then ask for help!\nOn systems where the lab has a specific allocation of cores (e.g. Sherlock), don’t use all of the cores at once unless having first discussed your needs at the lab meeting or via the lab mailing list or Slack.\nBe sure to set up your environment properly:\n\nAlways set your umask to allow group read/write; otherwise you may create files that can’t be modified by others in the group.\n\nShare your wisdom\n\nIf you encounter a problem that is not documented in the lab’s internal documentation, then add it to the documentation once you have solved it\nIf you encounter an error in the documentation, then flag it and/or fix it\nYou can refer to this website for more information on Sherlock, and if you have any further questions you can contact the Sherlock admis via email/Slack or meet during specific Office Hours as specifiedhere.\n\nEach TACC system has its own dedicated user guide that provides substantial information about how to use the system.\nUsers of shared systems should clean up directories as projects are completed, removing intermediate files that are not necessary to keep. The storage of redundant data should be avoided, except where required for backups.",
+    "section": "2 Shared computing platforms",
+    "text": "2 Shared computing platforms\nWe use two primary shared computing platforms:\n\nStanford Research Computing Center\nTexas Advanced Computing Center\n\nThe decision regarding which platform to use will depend upon the specific needs of the project, and can be discussed with Dr. Poldrack or other experienced researchers in the lab.\n\n2.1 Shared computing etiquette\nLab members should follow good shared computing etiquette:\n\nNever run a computing job on the login node\n\nFor testing purposes, you can access a development node.\n\nKeep in mind that our allocation on these systems is limited.\nRun a small test job before starting a large job\nEnsure that your jobs are efficiently using the system resources - if you aren’t sure, then ask for help!\nOn systems where the lab has a specific allocation of cores (e.g. Sherlock), don’t use all of the cores at once unless having first discussed your needs at the lab meeting or via the lab mailing list or Slack.\nBe sure to set up your environment properly:\n\nAlways set your umask to allow group read/write; otherwise you may create files that can’t be modified by others in the group.\n\nShare your wisdom\n\nIf you encounter a problem that is not documented in the lab’s internal documentation, then add it to the documentation once you have solved it\nIf you encounter an error in the documentation, then flag it and/or fix it\nYou can refer to this website for more information on Sherlock, and if you have any further questions you can contact the Sherlock admins via email/Slack or meet during specific Office Hours as specifiedhere.\n\nEach TACC system has its own dedicated user guide that provides substantial information about how to use the system.\nUsers of shared systems should clean up directories as projects are completed, removing intermediate files that are not necessary to keep. The storage of redundant data should be avoided, except where required for backups.",
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+          <li class="sidebar-item sidebar-item-section">
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+ <span class="menu-text">Computing</span></a>
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+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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+  <a href="./labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
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+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
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           </a> 
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   <div class="sidebar-item-container"> 
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@@ -302,13 +342,13 @@
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       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
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+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
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@@ -441,7 +481,7 @@ <h2 class="anchored" data-anchor-id="task-software-used-in-consortium-for-neurop
 </section>
 <section id="datacodeosf-pages-for-published-papers" class="level2">
 <h2 class="anchored" data-anchor-id="datacodeosf-pages-for-published-papers">Data/code/OSF pages for published papers</h2>
-<div id="25e6fcfc" class="cell" data-message="false" data-execution_count="1">
+<div id="9fef5ffd" class="cell" data-message="false" data-execution_count="1">
 <section id="section" class="level3">
 <h3 class="anchored" data-anchor-id="section">2024</h3>
 <p>Mumford JA, Bissett PG, Jones HM, Shim S, Rios JAH, Poldrack RA (2024). The response time paradox in functional magnetic resonance imaging analyses. <em>Nature Human Behaviour, 8</em>, 349-360. <a href="https://doi.org/10.1038/s41562-023-01760-0">DOI</a> <a href="https://neurovault.org/collections/13656/">Data</a> <a href="https://doi.org/10.5281/zenodo.8083510">Code</a></p>
diff --git a/docs/talks.html b/docs/talks.html
index eb82f63..cb2715b 100644
--- a/docs/talks.html
+++ b/docs/talks.html
@@ -231,21 +231,61 @@
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 </li>
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
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+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
-  <a href="./labguide/computing/computing.html" class="sidebar-item-text sidebar-link">
+  <a href="./labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
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+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
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+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
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+</li>
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+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
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-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
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-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
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diff --git a/docs/volunteer.html b/docs/volunteer.html
index 5f6f4be..217ad06 100644
--- a/docs/volunteer.html
+++ b/docs/volunteer.html
@@ -229,21 +229,61 @@
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false">
+ <span class="menu-text">Computing</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
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+          </a> 
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+      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
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+  <a href="./labguide/computing/etiquette.html" class="sidebar-item-text sidebar-link">
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+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+ <span class="menu-text">Sherlock</span></a>
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth3 ">  
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+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/access-and-resources.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Access and resources</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/job-submission.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Job submission on Sherlock</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./labguide/computing/sherlock/data-management.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Data management on Sherlock</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
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+  </li>
+          <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false">
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-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-4" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-6" role="navigation" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-4" class="collapse list-unstyled sidebar-section depth2 ">  
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   <div class="sidebar-item-container"> 
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-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false">
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-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-5" role="navigation" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" role="navigation" aria-expanded="false" aria-label="Toggle section">
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           </a> 
       </div>
-      <ul id="quarto-sidebar-section-5" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
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diff --git a/people.yml b/people.yml
index dfa379d..5a1e27c 100644
--- a/people.yml
+++ b/people.yml
@@ -42,6 +42,8 @@
   - name: Nastasia Klevak
     orcid: 0009-0004-1000-9532
   - name: Jocelyn Ricard
+    website: http://ricardjocelyn.github.io
+    orcid: 0000-0001-9605-9389
   - name: Gustavo Santiago-Reyes
     orcid: 0009-0005-3764-3215
   - name: Anna Xu