From 9f7324355999336590cf6cc7e0e0046bb128f844 Mon Sep 17 00:00:00 2001 From: ulli Date: Thu, 6 Aug 2020 20:55:39 -0400 Subject: [PATCH 1/3] Fix security vulnerability. Our collaborator identified the of sqlalchemy as problematic. Conda says, when building the notebook image, that bayeslite has an indirect dependency to sqlalchemy. However, when I make this dependency explicit, bayeslite complains that CGPM doesn't like. Thus pushing to a branch here to see the conda build on travis. Sosqlalchemy making this dependency explicit and bumping it's version should solve the problem. --- conda/meta.yaml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/conda/meta.yaml b/conda/meta.yaml index ba87077e..d60e849f 100644 --- a/conda/meta.yaml +++ b/conda/meta.yaml @@ -14,6 +14,7 @@ requirements: - matplotlib 1.5.* - numpy 1.11.* - python 2.7.* + - sqlalchemy 1.3.18 run: - nomkl - matplotlib 1.5.* @@ -23,6 +24,7 @@ requirements: - scikit-learn 0.17.* - scipy 0.17.* - statsmodels 0.6.* + - sqlalchemy 1.3.18 test: requires: From a459dbd51e7b2fa493dcc51e26140be76d1e93ee Mon Sep 17 00:00:00 2001 From: ulli Date: Thu, 6 Aug 2020 21:11:08 -0400 Subject: [PATCH 2/3] Undo previous commits as this fails with mysterious python version issues on travis. --- conda/meta.yaml | 2 -- 1 file changed, 2 deletions(-) diff --git a/conda/meta.yaml b/conda/meta.yaml index d60e849f..ba87077e 100644 --- a/conda/meta.yaml +++ b/conda/meta.yaml @@ -14,7 +14,6 @@ requirements: - matplotlib 1.5.* - numpy 1.11.* - python 2.7.* - - sqlalchemy 1.3.18 run: - nomkl - matplotlib 1.5.* @@ -24,7 +23,6 @@ requirements: - scikit-learn 0.17.* - scipy 0.17.* - statsmodels 0.6.* - - sqlalchemy 1.3.18 test: requires: From 01b61c3b2acc997ea25dc05f6b9413d0fce6dc16 Mon Sep 17 00:00:00 2001 From: ulli Date: Thu, 6 Aug 2020 21:31:31 -0400 Subject: [PATCH 3/3] Following up on the previous two commits. Trying a lower version of sqlalchemy. --- conda/meta.yaml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/conda/meta.yaml b/conda/meta.yaml index ba87077e..b7be2134 100644 --- a/conda/meta.yaml +++ b/conda/meta.yaml @@ -14,6 +14,7 @@ requirements: - matplotlib 1.5.* - numpy 1.11.* - python 2.7.* + - sqlalchemy 1.3.1 run: - nomkl - matplotlib 1.5.* @@ -23,6 +24,7 @@ requirements: - scikit-learn 0.17.* - scipy 0.17.* - statsmodels 0.6.* + - sqlalchemy 1.3.1 test: requires: