We need a workflow that uses TrimGalore for quality and adapter trimming of fastq sequences. TrimGalore (https://www.bioinformatics.babraham.ac.uk/projects/trim_galore) is a wrapper around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.