Strand consideration and fragment length profile on site

[kevinigfl]

Hi,
Thanks a lot to have developed this usefull tool giving a new dimension to MNase-seq, MNase-ChIP-seq, ..., profiles.
I experienced 2 issues:

• Using the option --sites=SITES and furnishing a bed6 (with the strand in column 6) does not consider the strand. This is a problem when I want to use a subset of TSS genes.

• Still using the option --sites=SITES the fragment length profile is independent of the site chosen

Thanks in advance for your help